4V4Z Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V4Z_001 | 1/AA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_4V4Z_003 | 1/AA/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_4V4Z_004 | 1/AA/186F:191A | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_4V4Z_005 | 1/AA/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_56691.2 | |
| HL_4V4Z_006 | 1/AA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_4V4Z_007 | 1/AA/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_4V4Z_008 | 1/AA/320:333 | No text annotation Not in a motif group | homologous HL_6CZR_079 HL_81205.2 | |
| HL_4V4Z_010 | 1/AA/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_4V4Z_011 | 1/AA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_4V4Z_012 | 1/AA/458:474 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_4V4Z_013 | 1/AA/522:527 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_4V4Z_014 | 1/AA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_4V4Z_015 | 1/AA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_4V4Z_016 | 1/AA/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_4V4Z_017 | 1/AA/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_4V4Z_018 | 1/AA/838:848 | No text annotation Not in a motif group | homologous HL_4LFB_018 HL_38927.2 | |
| HL_4V4Z_019 | 1/AA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_4V4Z_020 | 1/AA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_4V4Z_021 | 1/AA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4V4Z_022 | 1/AA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_4V4Z_024 | 1/AA/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_4V4Z_025 | 1/AA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4V4Z_026 | 1/AA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_4V4Z_027 | 1/AA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_4V4Z_028 | 1/AA/1265:1270 | No text annotation Not in a motif group | geometric HL_4KR9_003 HL_08127.1 | |
| HL_4V4Z_029 | 1/AA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_4V4Z_030 | 1/AA/1356:1366 | No text annotation Not in a motif group | homologous HL_6CZR_101 HL_96366.1 | |
| HL_4V4Z_031 | 1/AA/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_4V4Z_032 | 1/AA/1515:1520 | No text annotation Not in a motif group | homologous HL_5J7L_031 NA | |
| HL_4V4Z_033 | 1/AC/13:22 | No text annotation Not in a motif group | ||
| HL_4V4Z_034 | 1/AC/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.2 | |
| HL_4V4Z_035 | 1/AC/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5HR6_003 HL_22280.1 | |
| HL_4V4Z_036 | 1/AD/13:22 | No text annotation Not in a motif group | homologous HL_6GSL_220 NA | |
| HL_4V4Z_037 | 1/AD/31:39 | No text annotation Not in a motif group | homologous HL_5UD5_002 HL_49288.1 | |
| HL_4V4Z_038 | 1/AD/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V90_034 HL_22280.1 | |
| HL_4V4Z_039 | 1/BA/60:67 | No text annotation Not in a motif group | ||
| HL_4V4Z_040 | 1/BA/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_4V4Z_041 | 1/BA/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_4V4Z_042 | 1/BA/137A:141A | No text annotation Not in a motif group | ||
| HL_4V4Z_043 | 1/BA/194:201 | No text annotation Not in a motif group | homologous HL_7A0S_006 HL_06192.2 | |
| HL_4V4Z_044 | 1/BA/225:230 | No text annotation Not in a motif group | homologous HL_4WF9_007 HL_02862.2 | |
| HL_4V4Z_045 | 1/BA/246:252 | No text annotation Not in a motif group | homologous HL_7A0S_008 HL_67216.7 | |
| HL_4V4Z_046 | 1/BA/270J:270P | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_4V4Z_047 | 1/BA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_4V4Z_048 | 1/BA/319:323 | No text annotation Not in a motif group | homologous HL_7A0S_011 HL_75407.1 | |
| HL_4V4Z_049 | 1/BA/327:335 | No text annotation Not in a motif group | homologous HL_4WF9_012 HL_08002.8 | |
| HL_4V4Z_050 | 1/BA/383:391 | No text annotation Not in a motif group | ||
| HL_4V4Z_051 | 1/BA/411:416 | No text annotation Not in a motif group | ||
| HL_4V4Z_052 | 1/BA/461:468 | No text annotation Not in a motif group | ||
| HL_4V4Z_053 | 1/BA/487:493 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
| HL_4V4Z_054 | 1/BA/544:549 | No text annotation Not in a motif group | ||
| HL_4V4Z_055 | 1/BA/564:577 | No text annotation Not in a motif group | ||
| HL_4V4Z_056 | 1/BA/605:623 | No text annotation Not in a motif group | ||
| HL_4V4Z_057 | 1/BA/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_4V4Z_058 | 1/BA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_4V4Z_059 | 1/BA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_4V4Z_060 | 1/BA/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
| HL_4V4Z_061 | 1/BA/826:831 | No text annotation Not in a motif group | homologous HL_7A0S_024 HL_64365.1 | |
| HL_4V4Z_062 | 1/BA/884:892 | No text annotation Not in a motif group | ||
| HL_4V4Z_063 | 1/BA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_4V4Z_064 | 1/BA/977:986 | No text annotation Not in a motif group | ||
| HL_4V4Z_065 | 1/BA/1062:1076 | No text annotation Not in a motif group | ||
| HL_4V4Z_066 | 1/BA/1092:1099 | No text annotation Not in a motif group | ||
| HL_4V4Z_067 | 1/BA/1171:1178 | No text annotation Not in a motif group | ||
| HL_4V4Z_068 | 1/BA/1221:1228 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_52841.1 | |
| HL_4V4Z_069 | 1/BA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_4V4Z_070 | 1/BA/1324:1330 | No text annotation Not in a motif group | homologous HL_4WF9_033 HL_46680.1 | |
| HL_4V4Z_071 | 1/BA/1363:1368 | No text annotation Not in a motif group | ||
| HL_4V4Z_072 | 1/BA/1389:1398 | No text annotation Not in a motif group | ||
| HL_4V4Z_073 | 1/BA/1450:1461 | No text annotation Not in a motif group | geometric HL_4KR9_003 HL_08127.1 | |
| HL_4V4Z_074 | 1/BA/1492:1498 | No text annotation Not in a motif group | ||
| HL_4V4Z_075 | 1/BA/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_03562.2 | |
| HL_4V4Z_076 | 1/BA/1612:1619 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.2 | |
| HL_4V4Z_077 | 1/BA/1630:1636 | No text annotation Not in a motif group | homologous HL_7A0S_041 HL_26881.1 | |
| HL_4V4Z_078 | 1/BA/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_03562.2 | |
| HL_4V4Z_079 | 1/BA/1717:1742 | No text annotation Not in a motif group | ||
| HL_4V4Z_080 | 1/BA/1752:1756 | No text annotation Not in a motif group | homologous HL_7A0S_044 HL_76539.2 | |
| HL_4V4Z_081 | 1/BA/1779:1785 | No text annotation Not in a motif group | ||
| HL_4V4Z_082 | 1/BA/1806:1811 | No text annotation Not in a motif group | ||
| HL_4V4Z_083 | 1/BA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_4V4Z_084 | 1/BA/1911:1919 | No text annotation Not in a motif group | ||
| HL_4V4Z_085 | 1/BA/1950:1956 | No text annotation Not in a motif group | geometric HL_5T16_002 HL_65572.2 | |
| HL_4V4Z_086 | 1/BA/2027:2036 | No text annotation Not in a motif group | homologous HL_7A0S_049 HL_90642.6 | |
| HL_4V4Z_088 | 1/BA/2209:2215 | No text annotation Not in a motif group | ||
| HL_4V4Z_089 | 1/BA/2249:2255 | No text annotation Not in a motif group | ||
| HL_4V4Z_090 | 1/BA/2264:2276 | No text annotation Not in a motif group | homologous HL_7A0S_053 HL_19870.6 | |
| HL_4V4Z_091 | 1/BA/2304:2312 | No text annotation Not in a motif group | ||
| HL_4V4Z_092 | 1/BA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_4V4Z_093 | 1/BA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_4V4Z_094 | 1/BA/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_4V4Z_095 | 1/BA/2404:2413 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_30784.2 | |
| HL_4V4Z_096 | 1/BA/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_4V4Z_097 | 1/BA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_4V4Z_098 | 1/BA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_4V4Z_099 | 1/BA/2594:2599 | No text annotation Not in a motif group | ||
| HL_4V4Z_100 | 1/BA/2652:2668 | No text annotation Not in a motif group | ||
| HL_4V4Z_101 | 1/BA/2701:2706 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_4V4Z_102 | 1/BA/2746:2758 | No text annotation Not in a motif group | ||
| HL_4V4Z_103 | 1/BA/2794:2802 | No text annotation Not in a motif group | ||
| HL_4V4Z_104 | 1/BA/2819:2827 | No text annotation Not in a motif group | homologous HL_7A0S_067 HL_27930.1 | |
| HL_4V4Z_105 | 1/BA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_4V4Z_106 | 1/BB/34:48 | No text annotation Not in a motif group | ||
| HL_4V4Z_107 | 1/BB/86:90 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V4Z_002 | No text annotation | ||
| HL_4V4Z_009 | No text annotation | ||
| HL_4V4Z_023 | No text annotation | ||
| HL_4V4Z_087 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V4Z_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.2 | |
| IL_4V4Z_002 | 1/AA/44:46, 1/AA/395:398 | No text annotation Not in a motif group | geometric IL_4P3U_007 IL_95997.1 | |
| IL_4V4Z_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation Not in a motif group | geometric IL_4LFB_003 IL_11178.1 | |
| IL_4V4Z_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_4V4Z_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_4V4Z_006 | 1/AA/67:69, 1/AA/99:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_4V4Z_007 | 1/AA/129:131, 1/AA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_119 IL_16396.2 | |
| IL_4V4Z_008 | 1/AA/132:136, 1/AA/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_4V4Z_009 | 1/AA/147:153, 1/AA/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_4V4Z_010 | 1/AA/185:186B, 1/AA/191E:192 | No text annotation Not in a motif group | ||
| IL_4V4Z_011 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_4V4Z_012 | 1/AA/249:252, 1/AA/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_4V4Z_013 | 1/AA/292:293, 1/AA/304:308 | C-loop Not in a motif group | homologous IL_6CZR_125 IL_37712.2 | |
| IL_4V4Z_014 | 1/AA/367:369, 1/AA/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.13 | |
| IL_4V4Z_015 | 1/AA/371:375, 1/AA/389:390 | C-loop Not in a motif group | homologous IL_4LFB_015 IL_75255.1 | |
| IL_4V4Z_016 | 1/AA/375:376, 1/AA/387:389 | Single bulged G Not in a motif group | geometric IL_4LFB_016 IL_00225.2 | |
| IL_4V4Z_017 | 1/AA/409:416, 1/AA/427:433 | No text annotation Not in a motif group | ||
| IL_4V4Z_018 | 1/AA/446:450, 1/AA/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_6CZR_130 IL_88269.3 | |
| IL_4V4Z_019 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_4V4Z_020 | 1/AA/515:521, 1/AA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4V4Z_021 | 1/AA/569:575, 1/AA/880:881 | No text annotation Not in a motif group | homologous IL_6CZR_134 IL_69996.1 | |
| IL_4V4Z_022 | 1/AA/579:584, 1/AA/757:762 | No text annotation Not in a motif group | ||
| IL_4V4Z_023 | 1/AA/594:596, 1/AA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_4V4Z_024 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_4V4Z_025 | 1/AA/605:612, 1/AA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_4V4Z_026 | 1/AA/657:658, 1/AA/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_4V4Z_027 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_4V4Z_028 | 1/AA/673:677, 1/AA/713:717 | No text annotation Not in a motif group | ||
| IL_4V4Z_029 | 1/AA/683:688, 1/AA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4V4Z_030 | 1/AA/774:778, 1/AA/804:805 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
| IL_4V4Z_031 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_4V4Z_032 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4V4Z_033 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A Not in a motif group | homologous IL_6CZR_147 IL_37497.2 | |
| IL_4V4Z_034 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_4V4Z_035 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_4V4Z_036 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_4V4Z_038 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_4V4Z_039 | 1/AA/1052:1056, 1/AA/1204:1206 | No text annotation Not in a motif group | homologous IL_6CZR_154 IL_76319.2 | |
| IL_4V4Z_040 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_6CZR_155 IL_93353.1 | |
| IL_4V4Z_041 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged U Not in a motif group | geometric IL_2PN3_003 IL_83039.13 | |
| IL_4V4Z_042 | 1/AA/1061:1063, 1/AA/1193:1195 | No text annotation Not in a motif group | homologous IL_4LFB_047 IL_95997.1 | |
| IL_4V4Z_043 | 1/AA/1124:1127, 1/AA/1145:1149 | No text annotation Not in a motif group | ||
| IL_4V4Z_044 | 1/AA/1127:1132, 1/AA/1142:1145 | No text annotation Not in a motif group | ||
| IL_4V4Z_045 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation Not in a motif group | homologous IL_6CZR_160 IL_09129.1 | |
| IL_4V4Z_046 | 1/AA/1255:1258, 1/AA/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_4V4Z_047 | 1/AA/1259:1262, 1/AA/1273:1276 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_001 IL_30621.2 | |
| IL_4V4Z_048 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_4V4Z_049 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4V4Z_050 | 1/AA/1405:1409, 1/AA/1491:1496 | No text annotation Not in a motif group | ||
| IL_4V4Z_051 | 1/AA/1412:1414, 1/AA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_4V4Z_052 | 1/AA/1416:1420, 1/AA/1480:1484 | No text annotation Not in a motif group | ||
| IL_4V4Z_053 | 1/AA/1431:1435, 1/AA/1466:1469 | UAA/GAN related Not in a motif group | geometric IL_3FTM_002 IL_77691.1 | |
| IL_4V4Z_054 | 1/AA/1435:1437, 1/AA/1464:1466 | No text annotation Not in a motif group | homologous IL_6CZR_171 IL_95997.1 | |
| IL_4V4Z_055 | 1/AA/1440:1447, 1/AA/1459:1461 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.2 | |
| IL_4V4Z_056 | 1/AC/1:2, 1/AC/71:72 | No text annotation Not in a motif group | ||
| IL_4V4Z_057 | 1/BA/25:30, 1/BA/510:515 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_4V4Z_058 | 1/BA/36:37, 1/BA/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
| IL_4V4Z_059 | 1/BA/43:44, 1/BA/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_4V4Z_060 | 1/BA/81:85, 1/BA/97:105 | Kink-turn Not in a motif group | homologous IL_7A0S_004 IL_45067.2 | |
| IL_4V4Z_061 | 1/BA/183:184, 1/BA/212:214 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_4V4Z_062 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_250 IL_04346.7 | |
| IL_4V4Z_063 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_4V4Z_064 | 1/BA/271:272, 1/BA/365:366 | Multiple bulged bases Not in a motif group | geometric IL_1R3E_002 IL_59677.2 | |
| IL_4V4Z_065 | 1/BA/273:273A, 1/BA/363E:364 | No text annotation Not in a motif group | ||
| IL_4V4Z_066 | 1/BA/288:292, 1/BA/348:353 | No text annotation Not in a motif group | ||
| IL_4V4Z_067 | 1/BA/292:295, 1/BA/343:348 | No text annotation Not in a motif group | ||
| IL_4V4Z_068 | 1/BA/672:674, 1/BA/806:808 | No text annotation Not in a motif group | ||
| IL_4V4Z_069 | 1/BA/674:678, 1/BA/799:806 | No text annotation Not in a motif group | ||
| IL_4V4Z_070 | 1/BA/697:698, 1/BA/763:765 | Single bulged A Not in a motif group | homologous IL_7RQB_019 IL_37497.2 | |
| IL_4V4Z_071 | 1/BA/703:707, 1/BA/724:729 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_4V4Z_072 | 1/BA/738:741, 1/BA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_4V4Z_073 | 1/BA/844:846, 1/BA/932:934 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 IL_52767.2 | |
| IL_4V4Z_074 | 1/BA/848:850, 1/BA/928:930 | No text annotation Not in a motif group | ||
| IL_4V4Z_075 | 1/BA/858:862, 1/BA/915:919 | No text annotation Not in a motif group | ||
| IL_4V4Z_076 | 1/BA/862:863, 1/BA/913:915 | Minor groove platform Not in a motif group | homologous IL_7RQB_028 IL_42622.2 | |
| IL_4V4Z_077 | 1/BA/864:868, 1/BA/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_4V4Z_078 | 1/BA/875:879, 1/BA/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_4V4Z_079 | 1/BA/880:881, 1/BA/895:897 | No text annotation Not in a motif group | ||
| IL_4V4Z_080 | 1/BA/952:954, 1/BA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_4V4Z_081 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_4V4Z_082 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_4V4Z_083 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4WF9_037 IL_15861.7 | |
| IL_4V4Z_084 | 1/BA/1011:1013, 1/BA/1149:1150 | No text annotation Not in a motif group | ||
| IL_4V4Z_085 | 1/BA/1019:1030, 1/BA/1124:1143 | No text annotation Not in a motif group | ||
| IL_4V4Z_086 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_4V4Z_087 | 1/BA/1043:1051, 1/BA/1108:1112 | No text annotation Not in a motif group | ||
| IL_4V4Z_088 | 1/BA/1059:1062, 1/BA/1076:1079 | No text annotation Not in a motif group | ||
| IL_4V4Z_089 | 1/BA/1087:1091, 1/BA/1100:1102 | Stack and bulge Not in a motif group | geometric IL_2O3X_001 IL_82842.2 | |
| IL_4V4Z_090 | 1/BA/1196:1198, 1/BA/1247:1250 | No text annotation Not in a motif group | ||
| IL_4V4Z_091 | 1/BA/1202:1207, 1/BA/1239:1243 | No text annotation Not in a motif group | ||
| IL_4V4Z_092 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_4V4Z_093 | 1/BA/1219:1221, 1/BA/1228:1230 | Intercalated cWW Not in a motif group | geometric IL_7A0S_044 IL_82842.2 | |
| IL_4V4Z_094 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_4V4Z_095 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_4V4Z_096 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7A0S_049 IL_17136.1 | |
| IL_4V4Z_097 | 1/BA/1415:1421, 1/BA/1577:1587 | No text annotation Not in a motif group | ||
| IL_4V4Z_098 | 1/BA/1432:1435, 1/BA/1557:1561 | No text annotation Not in a motif group | ||
| IL_4V4Z_099 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_4V4Z_100 | 1/BA/1448:1449A, 1/BA/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
| IL_4V4Z_101 | 1/BA/1489:1491, 1/BA/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
| IL_4V4Z_102 | 1/BA/1525:1527, 1/BA/1544:1546 | No text annotation Not in a motif group | ||
| IL_4V4Z_103 | 1/BA/1527:1531, 1/BA/1540:1544 | No text annotation Not in a motif group | ||
| IL_4V4Z_104 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_4V4Z_105 | 1/BA/1662:1666, 1/BA/1994:1998 | No text annotation Not in a motif group | ||
| IL_4V4Z_106 | 1/BA/1666:1674, 1/BA/1991:1994 | No text annotation Not in a motif group | ||
| IL_4V4Z_107 | 1/BA/1686:1691, 1/BA/1696:1702 | No text annotation Not in a motif group | ||
| IL_4V4Z_108 | 1/BA/1770:1771, 1/BA/1980:1982 | No text annotation Not in a motif group | ||
| IL_4V4Z_109 | 1/BA/1798:1804, 1/BA/1813:1821 | No text annotation Not in a motif group | ||
| IL_4V4Z_110 | 1/BA/1837:1840, 1/BA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_4V4Z_111 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_4WF9_071 IL_69996.1 | |
| IL_4V4Z_112 | 1/BA/1846:1849, 1/BA/1893:1894 | No text annotation Not in a motif group | ||
| IL_4V4Z_113 | 1/BA/1851:1855, 1/BA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7A0S_069 IL_90318.1 | |
| IL_4V4Z_114 | 1/BA/1856:1860, 1/BA/1882:1886 | Triple sheared Not in a motif group | homologous IL_4WF9_074 IL_96141.1 | |
| IL_4V4Z_115 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
| IL_4V4Z_116 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform Not in a motif group | homologous IL_7A0S_073 IL_27635.1 | |
| IL_4V4Z_117 | 1/BA/2054:2056, 1/BA/2612:2615 | No text annotation Not in a motif group | homologous IL_4WF9_079 IL_54678.5 | |
| IL_4V4Z_118 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.13 | |
| IL_4V4Z_119 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_4V4Z_120 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_4V4Z_121 | 1/BA/2085:2087, 1/BA/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_4V4Z_126 | 1/BA/2297:2299, 1/BA/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_082 IL_38958.7 | |
| IL_4V4Z_127 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared Not in a motif group | homologous IL_4WF9_087 IL_09705.9 | |
| IL_4V4Z_128 | 1/BA/2401:2403, 1/BA/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
| IL_4V4Z_129 | 1/BA/2457:2459, 1/BA/2491:2494 | No text annotation Not in a motif group | ||
| IL_4V4Z_130 | 1/BA/2466:2470, 1/BA/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_4V4Z_131 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_4V4Z_132 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7A0S_089 IL_90933.2 | |
| IL_4V4Z_133 | 1/BA/2512:2513, 1/BA/2571:2574 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.2 | |
| IL_4V4Z_134 | 1/BA/2521:2522, 1/BA/2541:2544 | No text annotation Not in a motif group | ||
| IL_4V4Z_135 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_4V4Z_136 | 1/BA/2637:2640, 1/BA/2774:2781 | No text annotation Not in a motif group | ||
| IL_4V4Z_137 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop Not in a motif group | homologous IL_4WF9_101 IL_63596.6 | |
| IL_4V4Z_138 | 1/BA/2686:2691, 1/BA/2718:2723 | No text annotation Not in a motif group | ||
| IL_4V4Z_139 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
| IL_4V4Z_140 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_4V4Z_141 | 1/BA/2838:2839, 1/BA/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_4V4Z_142 | 1/BA/2843:2845, 1/BA/2871:2874 | No text annotation Not in a motif group | homologous IL_4WF9_107 IL_02284.5 | |
| IL_4V4Z_143 | 1/BA/2846:2852, 1/BA/2865:2870 | No text annotation Not in a motif group | ||
| IL_4V4Z_144 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_37497.2 | |
| IL_4V4Z_145 | 1/BB/23:28, 1/BB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_4V4Z_146 | 1/BB/30:31, 1/BB/51:54 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1U9S_005 IL_88739.1 | |
| IL_4V4Z_147 | 1/BB/71:79, 1/BB/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7A0S_106 IL_56455.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V4Z_037 | Intercalated cWW | ||
| IL_4V4Z_122 | No text annotation | ||
| IL_4V4Z_123 | No text annotation | ||
| IL_4V4Z_124 | No text annotation | ||
| IL_4V4Z_125 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V4Z_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation Not in a motif group | ||
| J3_4V4Z_002 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation Not in a motif group | ||
| J3_4V4Z_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation Not in a motif group | homologous J3_6CZR_017 NA | |
| J3_4V4Z_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_4V4Z_005 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_4V4Z_006 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_4V4Z_007 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation Not in a motif group | ||
| J3_4V4Z_008 | 1/AA/990:997, 1/AA/1044:1047, 1/AA/1210:1215 | No text annotation Not in a motif group | ||
| J3_4V4Z_010 | 1/AA/1064:1068, 1/AA/1107:1113, 1/AA/1187:1192 | No text annotation Not in a motif group | ||
| J3_4V4Z_011 | 1/AA/1072:1074, 1/AA/1083:1088, 1/AA/1097:1103 | No text annotation Not in a motif group | ||
| J3_4V4Z_012 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation Not in a motif group | ||
| J3_4V4Z_013 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation Not in a motif group | ||
| J3_4V4Z_014 | 1/BA/32:35, 1/BA/445:461, 1/BA/468:473 | No text annotation Not in a motif group | ||
| J3_4V4Z_015 | 1/BA/56:57, 1/BA/70:76, 1/BA/110:114 | No text annotation Not in a motif group | homologous J3_7A0S_002 NA | |
| J3_4V4Z_016 | 1/BA/683:687, 1/BA/775:777, 1/BA/787:794 | No text annotation Not in a motif group | ||
| J3_4V4Z_017 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation Not in a motif group | ||
| J3_4V4Z_018 | 1/BA/1055:1057, 1/BA/1081:1087, 1/BA/1102:1104 | No text annotation Not in a motif group | ||
| J3_4V4Z_019 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation Not in a motif group | homologous J3_7A0S_006 NA | |
| J3_4V4Z_020 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_4V4Z_021 | 1/BA/1344:1350, 1/BA/1381:1385, 1/BA/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_4V4Z_022 | 1/BA/2090:2093, 1/BA/2196:2205, 1/BA/2219:2229 | No text annotation Not in a motif group | ||
| J3_4V4Z_023 | 1/BA/2295:2297, 1/BA/2321:2323, 1/BA/2332:2337 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
| J3_4V4Z_024 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_4V4Z_025 | 1/BA/2814:2815, 1/BA/2831:2836, 1/BA/2882:2886 | No text annotation Not in a motif group | homologous J3_7RQB_014 NA | |
| J3_4V4Z_026 | 1/BB/11:16, 1/BB/68:70, 1/BB/106:109 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V4Z_009 | No text annotation |
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