7P48 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7P48_001 | 1/5/13:23 | No text annotation Not in a motif group | homologous HL_3WFS_001 NA | |
| HL_7P48_002 | 1/5/32:40 | No text annotation Not in a motif group | homologous HL_6CFJ_107 NA | |
| HL_7P48_003 | 1/5/54:62 | No text annotation Not in a motif group | homologous HL_6UGG_006 NA | |
| HL_7P48_004 | 1/A/67:74 | No text annotation Not in a motif group | homologous HL_4WF9_001 HL_86769.3 | |
| HL_7P48_005 | 1/A/87:95 | No text annotation Not in a motif group | homologous HL_4WF9_002 HL_96598.1 | |
| HL_7P48_006 | 1/A/122:127 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_7P48_007 | 1/A/136:143 | No text annotation Not in a motif group | homologous HL_4WF9_004 HL_84085.2 | |
| HL_7P48_008 | 1/A/159:169 | No text annotation Not in a motif group | ||
| HL_7P48_009 | 1/A/197:204 | No text annotation Not in a motif group | geometric HL_7RQB_006 HL_06192.2 | |
| HL_7P48_010 | 1/A/228:233 | No text annotation Not in a motif group | homologous HL_4WF9_007 HL_02862.2 | |
| HL_7P48_011 | 1/A/249:255 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_7P48_012 | 1/A/283:288 | No text annotation Not in a motif group | ||
| HL_7P48_013 | 1/A/348:355 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_7P48_014 | 1/A/362:366 | No text annotation Not in a motif group | homologous HL_4WF9_011 HL_75407.1 | |
| HL_7P48_015 | 1/A/370:378 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_7P48_016 | 1/A/427:439 | No text annotation Not in a motif group | ||
| HL_7P48_017 | 1/A/456:463 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.1 | |
| HL_7P48_018 | 1/A/508:513 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_7P48_019 | 1/A/533:538 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_7P48_020 | 1/A/587:594 | No text annotation Not in a motif group | homologous HL_4WF9_017 HL_50318.1 | |
| HL_7P48_021 | 1/A/609:618 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_018 HL_89380.2 | |
| HL_7P48_022 | 1/A/655:661 | GNRA Not in a motif group | geometric HL_1U6B_001 HL_42097.1 | |
| HL_7P48_023 | 1/A/674:679 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_7P48_024 | 1/A/686:692 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.1 | |
| HL_7P48_025 | 1/A/757:764 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_7P48_026 | 1/A/789:798 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_7P48_027 | 1/A/824:830 | No text annotation Not in a motif group | homologous HL_4WF9_024 HL_74322.1 | |
| HL_7P48_028 | 1/A/871:876 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_7P48_029 | 1/A/999:1006 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_7P48_030 | 1/A/1022:1029 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
| HL_7P48_032 | 1/A/1260:1265 | No text annotation Not in a motif group | homologous HL_7A0S_031 HL_87030.2 | |
| HL_7P48_033 | 1/A/1318:1326 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_032 HL_89380.2 | |
| HL_7P48_034 | 1/A/1361:1367 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_7P48_035 | 1/A/1400:1405 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_7P48_036 | 1/A/1426:1435 | No text annotation Not in a motif group | homologous HL_4WF9_035 HL_69023.2 | |
| HL_7P48_037 | 1/A/1495:1505 | No text annotation Not in a motif group | ||
| HL_7P48_038 | 1/A/1535:1541 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_7P48_040 | 1/A/1612:1615 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_7P48_041 | 1/A/1656:1663 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_7P48_042 | 1/A/1673:1681 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
| HL_7P48_043 | 1/A/1735:1740 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_03562.2 | |
| HL_7P48_044 | 1/A/1762:1767 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_7P48_045 | 1/A/1779:1783 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_7P48_046 | 1/A/1803:1815 | No text annotation Not in a motif group | ||
| HL_7P48_047 | 1/A/1833:1838 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_7P48_048 | 1/A/1937:1947 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_7P48_049 | 1/A/1976:1984 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_7P48_050 | 1/A/2054:2063 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_7P48_051 | 1/A/2236:2242 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_7P48_052 | 1/A/2275:2283 | No text annotation Not in a motif group | homologous HL_5J7L_186 NA | |
| HL_7P48_053 | 1/A/2291:2303 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_7P48_055 | 1/A/2351:2358 | No text annotation Not in a motif group | homologous HL_4WF9_052 HL_12078.2 | |
| HL_7P48_056 | 1/A/2382:2389 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_7P48_057 | 1/A/2401:2406 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
| HL_7P48_058 | 1/A/2431:2440 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_7P48_059 | 1/A/2498:2506 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_7P48_060 | 1/A/2555:2562 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_7P48_061 | 1/A/2578:2584 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_7P48_062 | 1/A/2621:2626 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_7P48_064 | 1/A/2728:2733 | Ribsomal LSU H95 Not in a motif group | homologous HL_4WF9_061 HL_46680.1 | |
| HL_7P48_065 | 1/A/2772:2786 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_7P48_066 | 1/A/2819:2824 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_7P48_067 | 1/A/2839:2847 | No text annotation Not in a motif group | homologous HL_4WF9_064 HL_27930.1 | |
| HL_7P48_068 | 1/A/2876:2881 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_7P48_069 | 1/B/36:42 | No text annotation Not in a motif group | geometric HL_7RQB_070 HL_87939.1 | |
| HL_7P48_070 | 1/B/83:88 | No text annotation Not in a motif group | geometric HL_7A0S_007 HL_02862.2 | |
| HL_7P48_071 | 1/a/13:23 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_7P48_073 | 1/a/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_7P48_076 | 1/a/267:275 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_7P48_077 | 1/a/304:309 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_7P48_078 | 1/a/328:341 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_7P48_079 | 1/a/350:355 | UNCG Not in a motif group | homologous HL_5J7L_009 HL_03562.2 | |
| HL_7P48_080 | 1/a/386:393 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_7P48_081 | 1/a/427:432 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_7P48_082 | 1/a/470:479 | No text annotation Not in a motif group | ||
| HL_7P48_083 | 1/a/530:535 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_7P48_084 | 1/a/625:631 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
| HL_7P48_085 | 1/a/697:706 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_7P48_086 | 1/a/734:739 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_7P48_087 | 1/a/794:804 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_7P48_089 | 1/a/871:876 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_7P48_090 | 1/a/906:911 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_7P48_091 | 1/a/972:981 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_7P48_092 | 1/a/1020:1027 | No text annotation Not in a motif group | homologous HL_6CZR_093 NA | |
| HL_7P48_093 | 1/a/1087:1092 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_7P48_094 | 1/a/1099:1108 | No text annotation Not in a motif group | ||
| HL_7P48_096 | 1/a/1175:1181 | GNRA Not in a motif group | homologous HL_6CZR_098 HL_42097.1 | |
| HL_7P48_097 | 1/a/1275:1280 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_7P48_098 | 1/a/1324:1333 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_89380.2 | |
| HL_7P48_099 | 1/a/1366:1376 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_7P48_100 | 1/a/1526:1531 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7P48_031 | No text annotation | ||
| HL_7P48_039 | No text annotation | ||
| HL_7P48_054 | No text annotation | ||
| HL_7P48_063 | No text annotation | ||
| HL_7P48_072 | No text annotation | ||
| HL_7P48_074 | No text annotation | ||
| HL_7P48_075 | No text annotation | ||
| HL_7P48_088 | No text annotation | ||
| HL_7P48_095 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7P48_001 | 1/A/23:30, 1/A/555:562 | No text annotation Not in a motif group | ||
| IL_7P48_002 | 1/A/36:37, 1/A/488:490 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_7P48_003 | 1/A/43:45, 1/A/479:482 | Major groove platform with extra cWW Not in a motif group | geometric IL_3PDR_004 IL_18471.2 | |
| IL_7P48_004 | 1/A/81:85, 1/A/97:104 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_7P48_005 | 1/A/152:153, 1/A/175:177 | Single bulged A Not in a motif group | homologous IL_4WF9_006 IL_37497.2 | |
| IL_7P48_006 | 1/A/186:187, 1/A/215:217 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_7P48_007 | 1/A/190:197, 1/A/204:212 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_008 IL_35728.2 | |
| IL_7P48_008 | 1/A/241:248, 1/A/256:262 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_009 IL_04346.7 | |
| IL_7P48_009 | 1/A/319:328, 1/A/398:400 | No text annotation Not in a motif group | ||
| IL_7P48_010 | 1/A/336:338, 1/A/386:390 | No text annotation Not in a motif group | homologous IL_4WF9_014 IL_69440.1 | |
| IL_7P48_011 | 1/A/527:530, 1/A/541:554 | No text annotation Not in a motif group | homologous IL_4WF9_015 IL_60992.6 | |
| IL_7P48_012 | 1/A/581:584, 1/A/597:600 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.9 | |
| IL_7P48_013 | 1/A/607:609, 1/A/618:620 | No text annotation Not in a motif group | geometric IL_4WF9_017 IL_95997.1 | |
| IL_7P48_014 | 1/A/638:640, 1/A/705:707 | No text annotation Not in a motif group | homologous IL_4WF9_018 IL_51629.2 | |
| IL_7P48_015 | 1/A/649:653, 1/A/663:667 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_7P48_016 | 1/A/717:719, 1/A/851:853 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_7P48_017 | 1/A/719:723, 1/A/844:851 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_5J7L_260 IL_17470.6 | |
| IL_7P48_018 | 1/A/742:743, 1/A/808:810 | Single bulged A Not in a motif group | homologous IL_4WF9_022 IL_37497.2 | |
| IL_7P48_019 | 1/A/747:748, 1/A/773:775 | Single bulged G Not in a motif group | geometric IL_5TBW_029 IL_00225.2 | |
| IL_7P48_020 | 1/A/748:752, 1/A/769:773 | Triple sheared Not in a motif group | homologous IL_5J7L_263 IL_56467.8 | |
| IL_7P48_021 | 1/A/783:785, 1/A/802:803 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_7P48_022 | 1/A/820:822, 1/A/832:836 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.6 | |
| IL_7P48_023 | 1/A/881:883, 1/A/984:987 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_7P48_024 | 1/A/889:893, 1/A/975:978 | No text annotation Not in a motif group | homologous IL_4WF9_029 IL_06300.1 | |
| IL_7P48_025 | 1/A/896:897, 1/A/970:972 | Single bulged U Not in a motif group | homologous IL_4WF9_030 IL_83039.13 | |
| IL_7P48_026 | 1/A/901:907, 1/A/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_4WF9_031 IL_93830.3 | |
| IL_7P48_027 | 1/A/907:908, 1/A/958:960 | Minor groove platform Not in a motif group | geometric IL_7RQB_028 IL_42622.2 | |
| IL_7P48_028 | 1/A/909:914, 1/A/953:957 | No text annotation Not in a motif group | ||
| IL_7P48_029 | 1/A/915:917, 1/A/950:952 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_034 IL_52767.2 | |
| IL_7P48_030 | 1/A/1038:1040, 1/A/1203:1204 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_7P48_031 | 1/A/1042:1046, 1/A/1197:1201 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_89002.2 | |
| IL_7P48_032 | 1/A/1047:1055, 1/A/1194:1196 | No text annotation Not in a motif group | ||
| IL_7P48_033 | 1/A/1055:1057, 1/A/1193:1194 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.13 | |
| IL_7P48_034 | 1/A/1062:1068, 1/A/1184:1188 | No text annotation Not in a motif group | geometric IL_5J7L_280 IL_57188.3 | |
| IL_7P48_035 | 1/A/1068:1074, 1/A/1168:1184 | No text annotation Not in a motif group | geometric IL_4WF9_040 IL_50715.1 | |
| IL_7P48_036 | 1/A/1075:1078, 1/A/1165:1167 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_82068.2 | |
| IL_7P48_037 | 1/A/1235:1237, 1/A/1285:1288 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
| IL_7P48_038 | 1/A/1243:1245, 1/A/1277:1279 | Isolated cWH basepair Not in a motif group | homologous IL_4WF9_045 IL_51629.2 | |
| IL_7P48_039 | 1/A/1246:1253, 1/A/1272:1276 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
| IL_7P48_040 | 1/A/1257:1259, 1/A/1266:1268 | Intercalated cWW Not in a motif group | homologous IL_4WF9_047 IL_82842.2 | |
| IL_7P48_041 | 1/A/1300:1307, 1/A/2038:2044 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_048 IL_04346.7 | |
| IL_7P48_042 | 1/A/1356:1360, 1/A/1368:1370 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_4WF9_050 IL_37712.2 | |
| IL_7P48_043 | 1/A/1388:1392, 1/A/1413:1417 | UAA/GAN Not in a motif group | homologous IL_4WF9_051 IL_89002.2 | |
| IL_7P48_044 | 1/A/1394:1398, 1/A/1407:1411 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_7P48_046 | 1/A/1461:1465, 1/A/1624:1627 | Other IL Not in a motif group | homologous IL_4WF9_054 IL_04059.1 | |
| IL_7P48_047 | 1/A/1476:1479, 1/A/1604:1608 | No text annotation Not in a motif group | ||
| IL_7P48_048 | 1/A/1481:1484, 1/A/1598:1602 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_7P48_049 | 1/A/1512:1515, 1/A/1565:1569 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_7P48_050 | 1/A/1518:1522, 1/A/1558:1562 | Triple sheared Not in a motif group | homologous IL_7A0S_056 IL_41507.1 | |
| IL_7P48_051 | 1/A/1525:1526, 1/A/1549:1555 | No text annotation Not in a motif group | ||
| IL_7P48_052 | 1/A/1532:1534, 1/A/1542:1543 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
| IL_7P48_053 | 1/A/1695:1700, 1/A/2031:2033 | No text annotation Not in a motif group | homologous IL_4WF9_062 IL_12566.2 | |
| IL_7P48_054 | 1/A/1707:1709, 1/A/2022:2024 | Isolated tWW turn Not in a motif group | homologous IL_7A0S_060 IL_54997.7 | |
| IL_7P48_055 | 1/A/1710:1713, 1/A/2020:2021 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_064 IL_50694.2 | |
| IL_7P48_056 | 1/A/1713:1718, 1/A/2017:2020 | Intercalated tWH Not in a motif group | geometric IL_4WF9_065 IL_82842.2 | |
| IL_7P48_057 | 1/A/1730:1735, 1/A/1740:1746 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_5J7L_308 IL_65969.2 | |
| IL_7P48_058 | 1/A/1757:1759, 1/A/1770:1772 | No text annotation Not in a motif group | geometric IL_3R1D_012 IL_51629.2 | |
| IL_7P48_059 | 1/A/1797:1798, 1/A/2007:2009 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
| IL_7P48_060 | 1/A/1825:1831, 1/A/1840:1848 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_7P48_061 | 1/A/1864:1867, 1/A/1929:1930 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_7P48_062 | 1/A/1868:1869, 1/A/1925:1928 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_7P48_063 | 1/A/1873:1876, 1/A/1920:1921 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_7P48_064 | 1/A/1878:1882, 1/A/1914:1918 | UAA/GAN with extra pair Not in a motif group | homologous IL_7A0S_069 IL_90318.1 | |
| IL_7P48_065 | 1/A/1883:1887, 1/A/1909:1913 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_7P48_066 | 1/A/1891:1894, 1/A/1901:1905 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_7P48_067 | 1/A/1961:1972, 1/A/1988:1991 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_7P48_068 | 1/A/2077:2079, 1/A/2644:2645 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_7P48_069 | 1/A/2081:2083, 1/A/2639:2642 | No text annotation Not in a motif group | homologous IL_4WF9_079 IL_54678.5 | |
| IL_7P48_070 | 1/A/2094:2096, 1/A/2469:2470 | Single bulged U Not in a motif group | homologous IL_4WF9_080 IL_83039.13 | |
| IL_7P48_071 | 1/A/2097:2098, 1/A/2465:2468 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_7P48_072 | 1/A/2108:2110, 1/A/2263:2266 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4WF9_082 IL_38958.7 | |
| IL_7P48_073 | 1/A/2123:2125, 1/A/2218:2220 | No text annotation Not in a motif group | geometric IL_4V9F_105 IL_95997.1 | |
| IL_7P48_074 | 1/A/2229:2231, 1/A/2247:2248 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_7P48_075 | 1/A/2324:2326, 1/A/2344:2348 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 IL_38958.7 | |
| IL_7P48_076 | 1/A/2377:2380, 1/A/2391:2394 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_7P48_077 | 1/A/2428:2430, 1/A/2441:2442 | Single bulged U Not in a motif group | homologous IL_4WF9_088 IL_83039.13 | |
| IL_7P48_078 | 1/A/2480:2482, 1/A/2523:2527 | No text annotation Not in a motif group | ||
| IL_7P48_079 | 1/A/2484:2486, 1/A/2520:2521 | Major groove platform Not in a motif group | geometric IL_7A0S_085 IL_27635.1 | |
| IL_7P48_080 | 1/A/2486:2488, 1/A/2516:2520 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_7P48_081 | 1/A/2493:2497, 1/A/2507:2511 | Triple sheared Not in a motif group | homologous IL_4WF9_093 IL_56467.8 | |
| IL_7P48_082 | 1/A/2534:2535, 1/A/2607:2609 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_7P48_083 | 1/A/2537:2539, 1/A/2601:2605 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_095 IL_90933.2 | |
| IL_7P48_084 | 1/A/2539:2540, 1/A/2598:2601 | No text annotation Not in a motif group | geometric IL_4WF9_096 IL_71530.2 | |
| IL_7P48_085 | 1/A/2549:2550, 1/A/2567:2570 | Minor groove platform with intercalation Not in a motif group | homologous IL_4WF9_097 IL_95601.3 | |
| IL_7P48_086 | 1/A/2618:2619, 1/A/2628:2630 | Single bulged A Not in a motif group | homologous IL_4WF9_098 IL_69996.1 | |
| IL_7P48_087 | 1/A/2663:2667, 1/A/2801:2809 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
| IL_7P48_088 | 1/A/2707:2711, 1/A/2752:2754 | C-loop Not in a motif group | homologous IL_4WF9_101 IL_63596.6 | |
| IL_7P48_089 | 1/A/2714:2718, 1/A/2745:2749 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
| IL_7P48_090 | 1/A/2722:2723, 1/A/2738:2741 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_7P48_091 | 1/A/2764:2769, 1/A/2789:2794 | UAA/GAN with extra cWW Not in a motif group | homologous IL_4WF9_104 IL_49767.5 | |
| IL_7P48_092 | 1/A/2858:2859, 1/A/2898:2900 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_16396.2 | |
| IL_7P48_093 | 1/A/2863:2865, 1/A/2891:2894 | No text annotation Not in a motif group | homologous IL_4WF9_107 IL_02284.5 | |
| IL_7P48_094 | 1/A/2867:2872, 1/A/2885:2889 | No text annotation Not in a motif group | homologous IL_4WF9_108 IL_83162.5 | |
| IL_7P48_095 | 1/B/15:16, 1/B/63:65 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_7P48_096 | 1/B/21:27, 1/B/53:58 | No text annotation Not in a motif group | ||
| IL_7P48_097 | 1/B/27:30, 1/B/48:53 | No text annotation Not in a motif group | homologous IL_7A0S_104 IL_05192.1 | |
| IL_7P48_098 | 1/B/32:36, 1/B/42:46 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
| IL_7P48_099 | 1/B/69:77, 1/B/94:102 | Bacterial 5S Loop E Not in a motif group | homologous IL_7A0S_106 IL_56455.3 | |
| IL_7P48_100 | 1/B/78:80, 1/B/91:93 | No text annotation Not in a motif group | homologous IL_7A0S_107 IL_51629.2 | |
| IL_7P48_101 | 1/a/31:33, 1/a/560:561 | Single bulged G Not in a motif group | homologous IL_5J7L_001 IL_00225.2 | |
| IL_7P48_102 | 1/a/45:46, 1/a/404:406 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_7P48_103 | 1/a/48:53, 1/a/367:369 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_7P48_104 | 1/a/55:57, 1/a/364:365 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_7P48_105 | 1/a/64:67, 1/a/102:103 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_7P48_106 | 1/a/68:72, 1/a/97:101 | No text annotation Not in a motif group | ||
| IL_7P48_107 | 1/a/128:131, 1/a/239:240 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_7P48_108 | 1/a/132:136, 1/a/235:238 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_7P48_109 | 1/a/147:153, 1/a/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_7P48_110 | 1/a/187:190, 1/a/200:203 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_003 IL_30621.2 | |
| IL_7P48_111 | 1/a/213:216, 1/a/223:226 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4EYA_008 IL_30621.2 | |
| IL_7P48_112 | 1/a/250:255, 1/a/285:292 | No text annotation Not in a motif group | ||
| IL_7P48_113 | 1/a/257:260, 1/a/282:283 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_7P48_114 | 1/a/300:301, 1/a/312:316 | C-loop Not in a motif group | homologous IL_5J7L_016 IL_37712.2 | |
| IL_7P48_115 | 1/a/379:383, 1/a/397:398 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_7P48_116 | 1/a/383:384, 1/a/395:397 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_7P48_117 | 1/a/417:424, 1/a/435:441 | No text annotation Not in a motif group | ||
| IL_7P48_118 | 1/a/454:458, 1/a/491:496 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_7P48_119 | 1/a/458:464, 1/a/485:491 | No text annotation Not in a motif group | ||
| IL_7P48_120 | 1/a/512:519, 1/a/548:549 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_7P48_121 | 1/a/523:529, 1/a/536:544 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_7P48_122 | 1/a/577:583, 1/a/889:890 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_7P48_123 | 1/a/588:592, 1/a/765:769 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_7P48_124 | 1/a/602:604, 1/a/652:653 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_7P48_125 | 1/a/605:606, 1/a/648:651 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_7P48_126 | 1/a/612:613, 1/a/640:642 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 | |
| IL_7P48_127 | 1/a/613:620, 1/a/636:640 | No text annotation Not in a motif group | ||
| IL_7P48_128 | 1/a/662:663, 1/a/759:762 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5J7L_031 IL_50694.2 | |
| IL_7P48_129 | 1/a/665:666, 1/a/755:757 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_7P48_130 | 1/a/670:674, 1/a/748:751 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_7P48_131 | 1/a/681:686, 1/a/720:725 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_7P48_132 | 1/a/692:696, 1/a/707:714 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_7P48_133 | 1/a/782:787, 1/a/811:813 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_7P48_134 | 1/a/787:791, 1/a/807:811 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_7P48_135 | 1/a/896:903, 1/a/914:919 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_7P48_136 | 1/a/931:932, 1/a/1403:1405 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_7P48_137 | 1/a/934:936, 1/a/1400:1401 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_7P48_138 | 1/a/942:945, 1/a/1389:1394 | No text annotation Not in a motif group | homologous IL_6CZR_149 IL_93211.1 | |
| IL_7P48_139 | 1/a/962:963, 1/a/1236:1238 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_7P48_140 | 1/a/1002:1007, 1/a/1054:1056 | No text annotation Not in a motif group | ||
| IL_7P48_141 | 1/a/1059:1061, 1/a/1218:1219 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.13 | |
| IL_7P48_142 | 1/a/1062:1067, 1/a/1214:1217 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_7P48_143 | 1/a/1068:1069, 1/a/1209:1213 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_7P48_144 | 1/a/1071:1072, 1/a/1205:1207 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.2 | |
| IL_7P48_145 | 1/a/1072:1074, 1/a/1203:1205 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_7P48_146 | 1/a/1135:1138, 1/a/1155:1159 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.6 | |
| IL_7P48_147 | 1/a/1140:1143, 1/a/1152:1153 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_7P48_148 | 1/a/1168:1171, 1/a/1185:1191 | No text annotation Not in a motif group | homologous IL_4LFB_050 IL_42032.1 | |
| IL_7P48_149 | 1/a/1257:1263, 1/a/1294:1300 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_7P48_150 | 1/a/1265:1268, 1/a/1287:1292 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_7P48_151 | 1/a/1269:1274, 1/a/1281:1286 | No text annotation Not in a motif group | ||
| IL_7P48_152 | 1/a/1313:1319, 1/a/1338:1344 | No text annotation Not in a motif group | ||
| IL_7P48_153 | 1/a/1409:1411, 1/a/1512:1515 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_7P48_154 | 1/a/1411:1414, 1/a/1508:1512 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_7P48_155 | 1/a/1415:1417, 1/a/1505:1507 | No text annotation Not in a motif group | geometric IL_5VCI_002 IL_95997.1 | |
| IL_7P48_156 | 1/a/1417:1419, 1/a/1502:1505 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_009 IL_82068.2 | |
| IL_7P48_157 | 1/a/1422:1424, 1/a/1497:1499 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_7P48_158 | 1/a/1426:1429, 1/a/1492:1495 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_7P48_159 | 1/a/1434:1437, 1/a/1484:1487 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_100 IL_30621.2 | |
| IL_7P48_160 | 1/a/1440:1445, 1/a/1477:1481 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_7P48_161 | 1/a/1445:1447, 1/a/1475:1477 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_7P48_162 | 1/a/1450:1453, 1/a/1470:1472 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_5J7L_325 IL_38958.7 | |
| IL_7P48_163 | 1/a/1455:1458, 1/a/1466:1468 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7P48_045 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7P48_001 | 1/A/30:31, 1/A/520:527, 1/A/554:555 | No text annotation Not in a motif group | ||
| J3_7P48_002 | 1/A/56:67, 1/A/74:76, 1/A/109:113 | No text annotation Not in a motif group | ||
| J3_7P48_003 | 1/A/272:276, 1/A/295:302, 1/A/415:416 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
| J3_7P48_004 | 1/A/728:734, 1/A/818:820, 1/A/836:839 | No text annotation Not in a motif group | ||
| J3_7P48_005 | 1/A/743:745, 1/A/777:781, 1/A/805:808 | No text annotation Not in a motif group | ||
| J3_7P48_006 | 1/A/1335:1340, 1/A/1669:1671, 1/A/1683:1686 | No text annotation Not in a motif group | homologous J3_4WF9_004 NA | |
| J3_7P48_007 | 1/A/1342:1346, 1/A/1649:1655, 1/A/1664:1667 | No text annotation Not in a motif group | homologous J3_4WF9_005 NA | |
| J3_7P48_008 | 1/A/2118:2120, 1/A/2223:2228, 1/A/2249:2255 | No text annotation Not in a motif group | homologous J3_4WF9_007 NA | |
| J3_7P48_009 | 1/A/2322:2324, 1/A/2348:2350, 1/A/2359:2364 | No text annotation Not in a motif group | ||
| J3_7P48_010 | 1/A/2544:2547, 1/A/2572:2574, 1/A/2588:2594 | No text annotation Not in a motif group | homologous J3_4WF9_009 NA | |
| J3_7P48_011 | 1/A/2816:2817, 1/A/2826:2831, 1/A/2909:2913 | No text annotation Not in a motif group | homologous J3_7RQB_013 NA | |
| J3_7P48_012 | 1/A/2834:2835, 1/A/2851:2856, 1/A/2902:2906 | No text annotation Not in a motif group | homologous J3_7RQB_014 NA | |
| J3_7P48_013 | 1/B/9:14, 1/B/66:68, 1/B/103:106 | No text annotation Not in a motif group | ||
| J3_7P48_014 | 1/a/47:48, 1/a/369:377, 1/a/400:403 | No text annotation Not in a motif group | ||
| J3_7P48_015 | 1/a/594:596, 1/a/659:662, 1/a/762:763 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA | |
| J3_7P48_016 | 1/a/680:681, 1/a/725:733, 1/a/740:742 | No text annotation Not in a motif group | ||
| J3_7P48_017 | 1/a/834:837, 1/a/866:870, 1/a/877:883 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_7P48_018 | 1/a/952:956, 1/a/1244:1247, 1/a/1347:1350 | No text annotation Not in a motif group | ||
| J3_7P48_019 | 1/a/963:971, 1/a/982:993, 1/a/1231:1236 | No text annotation Not in a motif group | ||
| J3_7P48_020 | 1/a/999:1002, 1/a/1056:1058, 1/a/1220:1225 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_7P48_021 | 1/a/1074:1079, 1/a/1118:1124, 1/a/1197:1203 | No text annotation Not in a motif group | ||
| J3_7P48_022 | 1/a/1084:1085, 1/a/1094:1098, 1/a/1109:1113 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_7P48_023 | 1/a/1126:1129, 1/a/1165:1168, 1/a/1191:1195 | No text annotation Not in a motif group | ||
| J3_7P48_024 | 1/a/1247:1251, 1/a/1306:1313, 1/a/1344:1347 | No text annotation Not in a motif group | homologous J3_5J7L_011 NA |
Problematic loops
No problematic loops
Coloring options: