4V4P Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V4P_001 | 1/AA/59:68 | No text annotation Not in a motif group | homologous HL_7A0S_001 HL_99167.1 | |
| HL_4V4P_002 | 1/AA/87:95 | No text annotation Not in a motif group | homologous HL_4WF9_002 HL_96598.1 | |
| HL_4V4P_003 | 1/AA/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_4V4P_004 | 1/AA/134:145 | No text annotation Not in a motif group | ||
| HL_4V4P_005 | 1/AA/188:208 | No text annotation Not in a motif group | ||
| HL_4V4P_006 | 1/AA/224:231 | No text annotation Not in a motif group | ||
| HL_4V4P_007 | 1/AA/246:252 | No text annotation Not in a motif group | geometric HL_7RQB_011 HL_75407.1 | |
| HL_4V4P_008 | 1/AA/270I:270Q | No text annotation Not in a motif group | ||
| HL_4V4P_009 | 1/AA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_4V4P_010 | 1/AA/319:323 | No text annotation Not in a motif group | homologous HL_7A0S_011 HL_75407.1 | |
| HL_4V4P_011 | 1/AA/327:335 | No text annotation Not in a motif group | homologous HL_4WF9_012 HL_08002.8 | |
| HL_4V4P_012 | 1/AA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_4V4P_013 | 1/AA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_4V4P_014 | 1/AA/461:468 | No text annotation Not in a motif group | ||
| HL_4V4P_015 | 1/AA/487:493 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
| HL_4V4P_016 | 1/AA/543:550 | No text annotation Not in a motif group | ||
| HL_4V4P_017 | 1/AA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_4V4P_018 | 1/AA/712:719 | No text annotation Not in a motif group | ||
| HL_4V4P_019 | 1/AA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_4V4P_020 | 1/AA/778:786 | No text annotation Not in a motif group | geometric HL_6CF2_001 HL_24068.2 | |
| HL_4V4P_021 | 1/AA/826:831 | No text annotation Not in a motif group | homologous HL_7A0S_024 HL_64365.1 | |
| HL_4V4P_022 | 1/AA/884:892 | No text annotation Not in a motif group | ||
| HL_4V4P_023 | 1/AA/955:962 | No text annotation Not in a motif group | homologous HL_7A0S_026 HL_42097.1 | |
| HL_4V4P_024 | 1/AA/978:985 | No text annotation Not in a motif group | homologous HL_7A0S_027 HL_64430.2 | |
| HL_4V4P_025 | 1/AA/1062:1076 | No text annotation Not in a motif group | ||
| HL_4V4P_026 | 1/AA/1092:1099 | No text annotation Not in a motif group | ||
| HL_4V4P_027 | 1/AA/1171:1178 | No text annotation Not in a motif group | geometric HL_5TBW_022 HL_94803.1 | |
| HL_4V4P_028 | 1/AA/1221:1228 | No text annotation Not in a motif group | ||
| HL_4V4P_029 | 1/AA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_4V4P_030 | 1/AA/1324:1330 | No text annotation Not in a motif group | homologous HL_7A0S_033 HL_46680.1 | |
| HL_4V4P_031 | 1/AA/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_4V4P_032 | 1/AA/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_4V4P_033 | 1/AA/1450:1461 | No text annotation Not in a motif group | homologous HL_7A0S_036 HL_83808.1 | |
| HL_4V4P_034 | 1/AA/1492:1498 | No text annotation Not in a motif group | ||
| HL_4V4P_035 | 1/AA/1525:1546 | No text annotation Not in a motif group | ||
| HL_4V4P_036 | 1/AA/1612:1619 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.2 | |
| HL_4V4P_037 | 1/AA/1630:1636 | No text annotation Not in a motif group | geometric HL_5TBW_022 HL_94803.1 | |
| HL_4V4P_038 | 1/AA/1691:1696 | UNCG Not in a motif group | homologous HL_4WF9_040 HL_03562.2 | |
| HL_4V4P_039 | 1/AA/1716:1743 | No text annotation Not in a motif group | ||
| HL_4V4P_040 | 1/AA/1752:1756 | No text annotation Not in a motif group | ||
| HL_4V4P_041 | 1/AA/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_4V4P_042 | 1/AA/1806:1811 | No text annotation Not in a motif group | ||
| HL_4V4P_043 | 1/AA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_4V4P_044 | 1/AA/1910:1920 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_4V4P_045 | 1/AA/1949:1957 | No text annotation Not in a motif group | homologous HL_7A0S_048 HL_51824.1 | |
| HL_4V4P_046 | 1/AA/2027:2036 | No text annotation Not in a motif group | homologous HL_7A0S_049 HL_90642.6 | |
| HL_4V4P_047 | 1/AA/2138:2153 | No text annotation Not in a motif group | ||
| HL_4V4P_048 | 1/AA/2209:2215 | No text annotation Not in a motif group | ||
| HL_4V4P_049 | 1/AA/2248:2256 | No text annotation Not in a motif group | homologous HL_5J7L_186 NA | |
| HL_4V4P_050 | 1/AA/2264:2276 | No text annotation Not in a motif group | homologous HL_7A0S_053 HL_19870.6 | |
| HL_4V4P_051 | 1/AA/2304:2312 | No text annotation Not in a motif group | ||
| HL_4V4P_052 | 1/AA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_4V4P_053 | 1/AA/2355:2362 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_4V4P_054 | 1/AA/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_4V4P_055 | 1/AA/2404:2413 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_30784.2 | |
| HL_4V4P_056 | 1/AA/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_06192.2 | |
| HL_4V4P_057 | 1/AA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_4V4P_058 | 1/AA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_4V4P_059 | 1/AA/2592:2601 | No text annotation Not in a motif group | ||
| HL_4V4P_060 | 1/AA/2652:2668 | No text annotation Not in a motif group | ||
| HL_4V4P_061 | 1/AA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_4V4P_062 | 1/AA/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_4V4P_063 | 1/AA/2793:2803 | No text annotation Not in a motif group | homologous HL_7A0S_066 NA | |
| HL_4V4P_064 | 1/AA/2819:2827 | No text annotation Not in a motif group | homologous HL_7A0S_067 HL_27930.1 | |
| HL_4V4P_065 | 1/AA/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 | |
| HL_4V4P_066 | 1/AB/33:49 | No text annotation Not in a motif group | ||
| HL_4V4P_067 | 1/AB/86:90 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_42097.1 | |
| HL_4V4P_069 | 1/BA/13:21 | No text annotation Not in a motif group | ||
| HL_4V4P_070 | 1/BA/79:90 | No text annotation Not in a motif group | ||
| HL_4V4P_071 | 1/BA/158:163 | GNRA Not in a motif group | homologous HL_6CZR_074 HL_53845.1 | |
| HL_4V4P_072 | 1/BA/190B:190G | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_10278.1 | |
| HL_4V4P_073 | 1/BA/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_56691.2 | |
| HL_4V4P_074 | 1/BA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_4V4P_075 | 1/BA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_4V4P_076 | 1/BA/320:333 | No text annotation Not in a motif group | homologous HL_6CZR_079 HL_81205.2 | |
| HL_4V4P_077 | 1/BA/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_4V4P_078 | 1/BA/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_4V4P_079 | 1/BA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_4V4P_080 | 1/BA/458:474 | No text annotation Not in a motif group | homologous HL_6CZR_083 HL_43656.2 | |
| HL_4V4P_081 | 1/BA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_4V4P_082 | 1/BA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_4V4P_083 | 1/BA/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
| HL_4V4P_084 | 1/BA/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_4V4P_085 | 1/BA/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_4V4P_086 | 1/BA/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_53837.1 | |
| HL_4V4P_087 | 1/BA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_4V4P_088 | 1/BA/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_42097.1 | |
| HL_4V4P_089 | 1/BA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4V4P_090 | 1/BA/1011:1018 | No text annotation Not in a motif group | homologous HL_6CZR_093 NA | |
| HL_4V4P_091 | 1/BA/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_4V4P_092 | 1/BA/1089:1096 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_71554.2 | |
| HL_4V4P_093 | 1/BA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_4V4P_094 | 1/BA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_4V4P_095 | 1/BA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_4V4P_096 | 1/BA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_4V4P_097 | 1/BA/1356:1366 | No text annotation Not in a motif group | ||
| HL_4V4P_098 | 1/BA/1449:1454 | UNCG Not in a motif group | homologous HL_4LFB_031 HL_03562.2 | |
| HL_4V4P_099 | 1/BA/1515:1520 | No text annotation Not in a motif group | ||
| HL_4V4P_101 | 1/BB/30:40 | No text annotation Not in a motif group | homologous HL_2BTE_002 NA | |
| HL_4V4P_103 | 1/BC/13:22 | No text annotation Not in a motif group | homologous HL_3KFU_004 NA | |
| HL_4V4P_104 | 1/BC/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4WT8_216 HL_53597.2 | |
| HL_4V4P_105 | 1/BC/53:61 | No text annotation Not in a motif group | homologous HL_2AKE_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V4P_068 | No text annotation | ||
| HL_4V4P_100 | No text annotation | ||
| HL_4V4P_102 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V4P_001 | 1/AA/24:30, 1/AA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_4V4P_002 | 1/AA/35:36, 1/AA/444:445 | No text annotation Not in a motif group | ||
| IL_4V4P_003 | 1/AA/36:37, 1/AA/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
| IL_4V4P_004 | 1/AA/43:44, 1/AA/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_4V4P_005 | 1/AA/81:86, 1/AA/96:105 | No text annotation Not in a motif group | ||
| IL_4V4P_006 | 1/AA/183:184, 1/AA/212:214 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_4V4P_007 | 1/AA/239:246, 1/AA/252:258 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge Not in a motif group | geometric IL_4V9F_012 IL_59724.1 | |
| IL_4V4P_008 | 1/AA/270F:270G, 1/AA/270R:270T | Single stack bend Not in a motif group | geometric IL_5J7L_249 IL_76488.2 | |
| IL_4V4P_009 | 1/AA/270G:270I, 1/AA/270Q:270R | Not an internal loop Not in a motif group | geometric IL_4UYK_002 IL_76488.2 | |
| IL_4V4P_010 | 1/AA/273:273C, 1/AA/363C:364 | No text annotation Not in a motif group | ||
| IL_4V4P_011 | 1/AA/286:288, 1/AA/352:355 | No text annotation Not in a motif group | ||
| IL_4V4P_012 | 1/AA/288:295, 1/AA/343:352 | No text annotation Not in a motif group | ||
| IL_4V4P_013 | 1/AA/672:678, 1/AA/799:808 | No text annotation Not in a motif group | ||
| IL_4V4P_014 | 1/AA/696:698, 1/AA/763:766 | UU cWW Not in a motif group | geometric IL_3SZX_003 IL_95997.1 | |
| IL_4V4P_015 | 1/AA/702:703, 1/AA/728:730 | Single bulged G Not in a motif group | geometric IL_4WF9_023 IL_00225.2 | |
| IL_4V4P_016 | 1/AA/703:708, 1/AA/723:728 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7A0S_018 IL_86929.2 | |
| IL_4V4P_017 | 1/AA/736:741, 1/AA/756:760 | No text annotation Not in a motif group | ||
| IL_4V4P_018 | 1/AA/844:848, 1/AA/930:934 | No text annotation Not in a motif group | ||
| IL_4V4P_019 | 1/AA/848:850, 1/AA/928:930 | No text annotation Not in a motif group | ||
| IL_4V4P_020 | 1/AA/858:862, 1/AA/915:919 | No text annotation Not in a motif group | ||
| IL_4V4P_021 | 1/AA/862:863, 1/AA/913:915 | Minor groove platform Not in a motif group | homologous IL_7A0S_028 IL_42622.2 | |
| IL_4V4P_022 | 1/AA/864:868, 1/AA/909:912 | C-loop Not in a motif group | homologous IL_7A0S_029 IL_02509.1 | |
| IL_4V4P_023 | 1/AA/875:879, 1/AA/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_4V4P_024 | 1/AA/880:881, 1/AA/895:897 | No text annotation Not in a motif group | ||
| IL_4V4P_025 | 1/AA/952:954, 1/AA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_4V4P_026 | 1/AA/991:996, 1/AA/1159:1163 | No text annotation Not in a motif group | ||
| IL_4V4P_027 | 1/AA/998:1002, 1/AA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_4V4P_028 | 1/AA/1004:1013, 1/AA/1149:1151 | No text annotation Not in a motif group | ||
| IL_4V4P_029 | 1/AA/1018:1030, 1/AA/1124:1144 | No text annotation Not in a motif group | ||
| IL_4V4P_030 | 1/AA/1031:1034, 1/AA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_4V4P_031 | 1/AA/1042:1051, 1/AA/1108:1113 | No text annotation Not in a motif group | ||
| IL_4V4P_032 | 1/AA/1058:1062, 1/AA/1076:1080 | No text annotation Not in a motif group | ||
| IL_4V4P_033 | 1/AA/1196:1198, 1/AA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_52767.2 | |
| IL_4V4P_034 | 1/AA/1201:1208, 1/AA/1238:1244 | No text annotation Not in a motif group | ||
| IL_4V4P_035 | 1/AA/1208:1216, 1/AA/1233:1238 | No text annotation Not in a motif group | ||
| IL_4V4P_036 | 1/AA/1218:1221, 1/AA/1228:1231 | No text annotation Not in a motif group | ||
| IL_4V4P_037 | 1/AA/1319:1323, 1/AA/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_4V4P_038 | 1/AA/1351:1355, 1/AA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_4V4P_039 | 1/AA/1357:1361, 1/AA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7A0S_049 IL_17136.1 | |
| IL_4V4P_040 | 1/AA/1415:1423, 1/AA/1574:1587 | No text annotation Not in a motif group | ||
| IL_4V4P_041 | 1/AA/1432:1435, 1/AA/1557:1561 | No text annotation Not in a motif group | ||
| IL_4V4P_042 | 1/AA/1436:1440, 1/AA/1551:1556 | No text annotation Not in a motif group | ||
| IL_4V4P_043 | 1/AA/1448:1450, 1/AA/1461:1463 | No text annotation Not in a motif group | ||
| IL_4V4P_044 | 1/AA/1488:1492, 1/AA/1498:1501 | No text annotation Not in a motif group | ||
| IL_4V4P_045 | 1/AA/1651:1656, 1/AA/2004:2006 | No text annotation Not in a motif group | ||
| IL_4V4P_046 | 1/AA/1662:1665, 1/AA/1995:1998 | No text annotation Not in a motif group | ||
| IL_4V4P_047 | 1/AA/1684:1691, 1/AA/1696:1704 | No text annotation Not in a motif group | ||
| IL_4V4P_048 | 1/AA/1770:1771, 1/AA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7A0S_064 IL_37497.2 | |
| IL_4V4P_049 | 1/AA/1798:1804, 1/AA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_4WF9_069 IL_17069.3 | |
| IL_4V4P_050 | 1/AA/1837:1840, 1/AA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_4V4P_051 | 1/AA/1841:1842, 1/AA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7A0S_067 IL_16396.2 | |
| IL_4V4P_052 | 1/AA/1846:1849, 1/AA/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_4V4P_053 | 1/AA/1851:1855, 1/AA/1887:1891 | No text annotation Not in a motif group | ||
| IL_4V4P_054 | 1/AA/1856:1860, 1/AA/1882:1886 | No text annotation Not in a motif group | ||
| IL_4V4P_055 | 1/AA/1934:1945, 1/AA/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
| IL_4V4P_056 | 1/AA/2050:2052, 1/AA/2617:2618 | Major groove platform Not in a motif group | homologous IL_7A0S_073 IL_27635.1 | |
| IL_4V4P_057 | 1/AA/2053:2057, 1/AA/2611:2616 | No text annotation Not in a motif group | ||
| IL_4V4P_058 | 1/AA/2067:2069, 1/AA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.13 | |
| IL_4V4P_059 | 1/AA/2070:2071, 1/AA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7A0S_076 IL_42622.2 | |
| IL_4V4P_060 | 1/AA/2081:2083, 1/AA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_4V4P_061 | 1/AA/2085:2087, 1/AA/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_4V4P_062 | 1/AA/2108:2110, 1/AA/2179:2181 | No text annotation Not in a motif group | ||
| IL_4V4P_063 | 1/AA/2110:2120, 1/AA/2178:2179 | No text annotation Not in a motif group | ||
| IL_4V4P_064 | 1/AA/2350:2354, 1/AA/2363:2367 | Triple sheared Not in a motif group | geometric IL_5J7L_274 IL_56467.8 | |
| IL_4V4P_065 | 1/AA/2401:2403, 1/AA/2414:2415 | No text annotation Not in a motif group | ||
| IL_4V4P_066 | 1/AA/2453:2454, 1/AA/2498:2500 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.2 | |
| IL_4V4P_067 | 1/AA/2454:2455, 1/AA/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_4V4P_068 | 1/AA/2457:2461, 1/AA/2489:2494 | No text annotation Not in a motif group | ||
| IL_4V4P_069 | 1/AA/2466:2470, 1/AA/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_4V4P_070 | 1/AA/2509:2512, 1/AA/2574:2579 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_001 IL_30621.2 | |
| IL_4V4P_071 | 1/AA/2512:2513, 1/AA/2571:2574 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_4V4P_072 | 1/AA/2521:2522, 1/AA/2541:2544 | No text annotation Not in a motif group | ||
| IL_4V4P_073 | 1/AA/2591:2592, 1/AA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_4V4P_074 | 1/AA/2636:2640, 1/AA/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_4V4P_075 | 1/AA/2680:2684, 1/AA/2725:2727 | C-loop Not in a motif group | homologous IL_4WF9_101 IL_63596.6 | |
| IL_4V4P_076 | 1/AA/2686:2691, 1/AA/2718:2723 | No text annotation Not in a motif group | ||
| IL_4V4P_077 | 1/AA/2695:2696, 1/AA/2711:2714 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_71530.2 | |
| IL_4V4P_078 | 1/AA/2737:2742, 1/AA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_4V4P_079 | 1/AA/2838:2839, 1/AA/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_4V4P_080 | 1/AA/2843:2846, 1/AA/2870:2874 | No text annotation Not in a motif group | geometric IL_7RQB_109 IL_58764.3 | |
| IL_4V4P_081 | 1/AA/2846:2852, 1/AA/2865:2870 | No text annotation Not in a motif group | ||
| IL_4V4P_082 | 1/AB/23:28, 1/AB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_4V4P_083 | 1/AB/30:31, 1/AB/51:54 | No text annotation Not in a motif group | ||
| IL_4V4P_085 | 1/BA/30:32, 1/BA/552:553 | No text annotation Not in a motif group | ||
| IL_4V4P_086 | 1/BA/44:46, 1/BA/395:398 | No text annotation Not in a motif group | geometric IL_4V88_424 IL_95997.1 | |
| IL_4V4P_087 | 1/BA/47:52, 1/BA/359:361 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_11178.1 | |
| IL_4V4P_088 | 1/BA/54:56, 1/BA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_4V4P_089 | 1/BA/63:66, 1/BA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_4V4P_090 | 1/BA/67:69, 1/BA/99:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_4V4P_091 | 1/BA/129:136, 1/BA/227:232 | No text annotation Not in a motif group | ||
| IL_4V4P_092 | 1/BA/148:153, 1/BA/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_4V4P_093 | 1/BA/186:188, 1/BA/190K:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_4V4P_094 | 1/BA/242:247, 1/BA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_6CZR_123 IL_45067.2 | |
| IL_4V4P_095 | 1/BA/249:252, 1/BA/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_4V4P_096 | 1/BA/292:293, 1/BA/304:308 | C-loop Not in a motif group | homologous IL_6CZR_125 IL_37712.2 | |
| IL_4V4P_097 | 1/BA/367:369, 1/BA/392:393 | Single bulged U Not in a motif group | geometric IL_5J7L_017 IL_83039.13 | |
| IL_4V4P_098 | 1/BA/371:375, 1/BA/389:390 | C-loop Not in a motif group | homologous IL_6CZR_127 IL_75255.1 | |
| IL_4V4P_099 | 1/BA/375:376, 1/BA/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_4V4P_100 | 1/BA/409:416, 1/BA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_4V4P_101 | 1/BA/446:450, 1/BA/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_6CZR_130 IL_88269.3 | |
| IL_4V4P_102 | 1/BA/450:455, 1/BA/477:483 | No text annotation Not in a motif group | ||
| IL_4V4P_103 | 1/BA/504:511, 1/BA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_4V4P_104 | 1/BA/515:521, 1/BA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4V4P_105 | 1/BA/580:584, 1/BA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_4V4P_106 | 1/BA/594:596, 1/BA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_4V4P_107 | 1/BA/597:598, 1/BA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_4V4P_108 | 1/BA/605:612, 1/BA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_4V4P_109 | 1/BA/654:655, 1/BA/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_1G1X_004 IL_50694.2 | |
| IL_4V4P_110 | 1/BA/657:658, 1/BA/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_4V4P_111 | 1/BA/662:666, 1/BA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_4V4P_112 | 1/BA/673:677, 1/BA/713:717 | No text annotation Not in a motif group | ||
| IL_4V4P_113 | 1/BA/683:688, 1/BA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4V4P_114 | 1/BA/774:778, 1/BA/804:805 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
| IL_4V4P_115 | 1/BA/779:783, 1/BA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.1 | |
| IL_4V4P_116 | 1/BA/887:894, 1/BA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_4V4P_117 | 1/BA/922:923, 1/BA/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_4V4P_118 | 1/BA/925:927, 1/BA/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_4V4P_119 | 1/BA/933:935, 1/BA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_4V4P_120 | 1/BA/953:954, 1/BA/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_4V4P_121 | 1/BA/1025:1027, 1/BA/1034:1036 | No text annotation Not in a motif group | geometric IL_3DIL_006 IL_95997.1 | |
| IL_4V4P_122 | 1/BA/1048:1050, 1/BA/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_4V4P_123 | 1/BA/1052:1056, 1/BA/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_4V4P_124 | 1/BA/1057:1058, 1/BA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_4V4P_125 | 1/BA/1060:1061, 1/BA/1195:1197 | Single bulged U Not in a motif group | geometric IL_2PN3_003 IL_83039.13 | |
| IL_4V4P_126 | 1/BA/1061:1063, 1/BA/1193:1195 | No text annotation Not in a motif group | homologous IL_4LFB_047 IL_95997.1 | |
| IL_4V4P_127 | 1/BA/1124:1132, 1/BA/1142:1149 | No text annotation Not in a motif group | ||
| IL_4V4P_128 | 1/BA/1247:1253, 1/BA/1284:1290 | No text annotation Not in a motif group | homologous IL_6CZR_160 IL_09129.1 | |
| IL_4V4P_129 | 1/BA/1255:1258, 1/BA/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_4V4P_130 | 1/BA/1259:1262, 1/BA/1273:1276 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.9 | |
| IL_4V4P_131 | 1/BA/1303:1308, 1/BA/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_4V4P_132 | 1/BA/1401:1404, 1/BA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4V4P_133 | 1/BA/1405:1409, 1/BA/1491:1496 | No text annotation Not in a motif group | ||
| IL_4V4P_134 | 1/BA/1412:1414, 1/BA/1486:1488 | No text annotation Not in a motif group | homologous IL_4LFB_059 IL_95997.1 | |
| IL_4V4P_135 | 1/BA/1416:1420, 1/BA/1480:1484 | No text annotation Not in a motif group | ||
| IL_4V4P_136 | 1/BA/1430:1435, 1/BA/1466:1470 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_4V4P_137 | 1/BA/1435:1437, 1/BA/1464:1466 | No text annotation Not in a motif group | homologous IL_6CZR_171 IL_95997.1 | |
| IL_4V4P_138 | 1/BA/1440:1447, 1/BA/1459:1461 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V4P_084 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V4P_001 | 1/AA/56:57, 1/AA/70:76, 1/AA/110:114 | No text annotation Not in a motif group | homologous J3_7A0S_002 NA | |
| J3_4V4P_002 | 1/AA/683:687, 1/AA/775:778, 1/AA/786:794 | No text annotation Not in a motif group | ||
| J3_4V4P_003 | 1/AA/698:700, 1/AA/732:736, 1/AA/760:763 | No text annotation Not in a motif group | ||
| J3_4V4P_004 | 1/AA/1055:1057, 1/AA/1081:1091, 1/AA/1100:1104 | No text annotation Not in a motif group | ||
| J3_4V4P_005 | 1/AA/1298:1303, 1/AA/1625:1627, 1/AA/1639:1642 | No text annotation Not in a motif group | homologous J3_7A0S_006 NA | |
| J3_4V4P_006 | 1/AA/1306:1310, 1/AA/1604:1611, 1/AA/1620:1622 | No text annotation Not in a motif group | ||
| J3_4V4P_007 | 1/AA/2090:2093, 1/AA/2196:2205, 1/AA/2219:2229 | No text annotation Not in a motif group | ||
| J3_4V4P_008 | 1/AA/2295:2299, 1/AA/2317:2323, 1/AA/2332:2337 | No text annotation Not in a motif group | ||
| J3_4V4P_009 | 1/AA/2517:2520, 1/AA/2545:2547, 1/AA/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_4V4P_010 | 1/AA/2814:2815, 1/AA/2831:2836, 1/AA/2882:2886 | No text annotation Not in a motif group | ||
| J3_4V4P_011 | 1/BA/46:47, 1/BA/361:367, 1/BA/393:395 | No text annotation Not in a motif group | ||
| J3_4V4P_012 | 1/BA/586:588, 1/BA/651:654, 1/BA/754:755 | No text annotation Not in a motif group | ||
| J3_4V4P_013 | 1/BA/672:673, 1/BA/717:725, 1/BA/732:734 | No text annotation Not in a motif group | ||
| J3_4V4P_014 | 1/BA/826:829, 1/BA/857:861, 1/BA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_4V4P_015 | 1/BA/943:946, 1/BA/1235:1237, 1/BA/1337:1340 | No text annotation Not in a motif group | homologous J3_5J7L_005 NA | |
| J3_4V4P_016 | 1/BA/955:962, 1/BA/973:984, 1/BA/1221:1225 | No text annotation Not in a motif group | ||
| J3_4V4P_017 | 1/BA/990:998, 1/BA/1043:1047, 1/BA/1210:1215 | No text annotation Not in a motif group | ||
| J3_4V4P_018 | 1/BA/1003:1006, 1/BA/1023:1025, 1/BA/1036:1038 | No text annotation Not in a motif group | ||
| J3_4V4P_019 | 1/BA/1064:1068, 1/BA/1107:1113, 1/BA/1187:1192 | No text annotation Not in a motif group | ||
| J3_4V4P_020 | 1/BA/1072:1074, 1/BA/1083:1087, 1/BA/1098:1103 | No text annotation Not in a motif group | ||
| J3_4V4P_021 | 1/BA/1116:1118, 1/BA/1155:1162, 1/BA/1174:1184 | No text annotation Not in a motif group | ||
| J3_4V4P_022 | 1/BA/1237:1242, 1/BA/1295:1303, 1/BA/1334:1337 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: