Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5KPS_0011/27/12:22No text annotation
Not in a motif group
homologous
HL_5J7L_001
HL_89881.2
HL_5KPS_0021/27/81:88No text annotation
Not in a motif group
HL_5KPS_0031/27/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_5KPS_0041/27/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.1
HL_5KPS_0051/27/206:213No text annotation
Not in a motif group
geometric
HL_5J7L_151
HL_90617.2
HL_5KPS_0061/27/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_5KPS_0071/27/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_5KPS_0081/27/320:333No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_5KPS_0091/27/342:347No text annotation
Not in a motif group
homologous
HL_6CZR_080
HL_03562.2
HL_5KPS_0101/27/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_42097.1
HL_5KPS_0111/27/419:424UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_5KPS_0121/27/462:470No text annotation
Not in a motif group
homologous
HL_5J7L_012
HL_84085.2
HL_5KPS_0131/27/522:527No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_5KPS_0141/27/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.1
HL_5KPS_0151/27/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_5KPS_0161/27/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_5KPS_0171/27/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_5KPS_0181/27/840:846No text annotation
Not in a motif group
geometric
HL_5TBW_022
HL_94803.1
HL_5KPS_0191/27/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_5KPS_0201/27/897:902GNRA
Not in a motif group
homologous
HL_5J7L_020
HL_42097.1
HL_5KPS_0211/27/963:972No text annotation
Not in a motif group
homologous
HL_5J7L_021
NA
HL_5KPS_0221/27/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_5KPS_0231/27/1027:1034No text annotation
Not in a motif group
HL_5KPS_0241/27/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_5KPS_0251/27/1089:1096No text annotation
Not in a motif group
homologous
HL_5J7L_024
HL_71554.2
HL_5KPS_0261/27/1134:1140No text annotation
Not in a motif group
homologous
HL_4LFB_026
HL_03562.2
HL_5KPS_0271/27/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_5KPS_0281/27/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_5KPS_0291/27/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_5KPS_0301/27/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_5KPS_0311/27/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_5KPS_0321/27/1515:1520No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_5KPS_0331/28/59:68No text annotation
Not in a motif group
homologous
HL_5J7L_134
HL_18177.1
HL_5KPS_0341/28/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_84193.1
HL_5KPS_0351/28/123:128No text annotation
Not in a motif group
homologous
HL_7A0S_003
HL_75407.1
HL_5KPS_0361/28/137:142No text annotation
Not in a motif group
HL_5KPS_0371/28/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_5KPS_0381/28/194:201No text annotation
Not in a motif group
homologous
HL_5J7L_139
HL_06192.2
HL_5KPS_0391/28/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_27930.1
HL_5KPS_0401/28/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_5KPS_0411/28/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_5KPS_0421/28/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_5KPS_0431/28/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_5KPS_0441/28/410:417No text annotation
Not in a motif group
homologous
HL_5J7L_146
HL_96598.1
HL_5KPS_0451/28/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_42097.1
HL_5KPS_0461/28/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_42097.1
HL_5KPS_0471/28/545:548No text annotation
Not in a motif group
homologous
HL_7A0S_017
HL_53837.1
HL_5KPS_0481/28/566:575T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_150
HL_89380.2
HL_5KPS_0491/28/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.2
HL_5KPS_0501/28/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.1
HL_5KPS_0511/28/641:647No text annotation
Not in a motif group
homologous
HL_5J7L_153
HL_77805.2
HL_5KPS_0521/28/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_5KPS_0531/28/744:753No text annotation
Not in a motif group
homologous
HL_4WF9_023
HL_39334.6
HL_5KPS_0541/28/779:785Other HL
Not in a motif group
geometric
HL_2NUE_001
HL_07518.1
HL_5KPS_0551/28/826:831No text annotation
Not in a motif group
homologous
HL_5J7L_157
HL_64365.1
HL_5KPS_0561/28/884:892No text annotation
Not in a motif group
HL_5KPS_0571/28/954:963No text annotation
Not in a motif group
geometric
HL_3RG5_006
HL_49288.1
HL_5KPS_0581/28/978:985No text annotation
Not in a motif group
homologous
HL_5J7L_160
HL_64430.2
HL_5KPS_0591/28/1064:1074No text annotation
Not in a motif group
homologous
HL_5J7L_161
HL_07145.1
HL_5KPS_0601/28/1092:1099No text annotation
Not in a motif group
homologous
HL_6PRV_002
HL_84085.2
HL_5KPS_0611/28/1169:1180No text annotation
Not in a motif group
HL_5KPS_0621/28/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_87030.2
HL_5KPS_0631/28/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_5KPS_0641/28/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_5KPS_0651/28/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_5KPS_0661/28/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_5KPS_0671/28/1451:1459No text annotation
Not in a motif group
HL_5KPS_0681/28/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_5KPS_0691/28/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_03562.2
HL_5KPS_0701/28/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_5KPS_0711/28/1612:1619No text annotation
Not in a motif group
homologous
HL_7A0S_040
HL_64430.2
HL_5KPS_0721/28/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.1
HL_5KPS_0731/28/1691:1696No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_03562.2
HL_5KPS_0741/28/1728:1731No text annotation
Not in a motif group
homologous
HL_5J7L_176
HL_98426.1
HL_5KPS_0751/28/1752:1756No text annotation
Not in a motif group
homologous
HL_5J7L_177
HL_76539.2
HL_5KPS_0761/28/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_5KPS_0771/28/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_42097.1
HL_5KPS_0781/28/1868:1873Other HL
Not in a motif group
homologous
HL_5J7L_180
HL_42097.1
HL_5KPS_0791/28/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_5KPS_0801/28/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_5KPS_0811/28/2027:2036No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_5KPS_0821/28/2142:2149No text annotation
Not in a motif group
HL_5KPS_0831/28/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_5KPS_0841/28/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_5KPS_0851/28/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_5KPS_0861/28/2303:2313No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_5KPS_0871/28/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.2
HL_5KPS_0881/28/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_5KPS_0891/28/2374:2379GNRA
Not in a motif group
homologous
HL_5J7L_191
HL_42097.1
HL_5KPS_0901/28/2404:2413No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_30784.2
HL_5KPS_0911/28/2471:2479No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_5KPS_0921/28/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_88526.2
HL_5KPS_0931/28/2551:2557No text annotation
Not in a motif group
homologous
HL_5J7L_195
NA
HL_5KPS_0941/28/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_5KPS_0951/28/2658:2663GNRA
Not in a motif group
geometric
HL_1MZP_001
HL_42097.1
HL_5KPS_0961/28/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_5KPS_0971/28/2745:2759No text annotation
Not in a motif group
homologous
HL_4WF9_062
HL_56677.7
HL_5KPS_0981/28/2795:2801Other HL
Not in a motif group
homologous
HL_5J7L_200
HL_34168.2
HL_5KPS_0991/28/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_5KPS_1001/28/2856:2861No text annotation
Not in a motif group
homologous
HL_7A0S_068
HL_42097.1
HL_5KPS_1011/29/38:44No text annotation
Not in a motif group
geometric
HL_7RQB_070
HL_87939.1
HL_5KPS_1021/29/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.2
HL_5KPS_1031/31/13:22No text annotation
Not in a motif group
homologous
HL_5B63_003
HL_25462.2
HL_5KPS_1041/31/31:39No text annotation
Not in a motif group
homologous
HL_6CFJ_107
NA
HL_5KPS_1051/31/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4V9Q_215
HL_22280.1
HL_5KPS_1061/32/13:22No text annotation
Not in a motif group
homologous
HL_5E81_211
NA
HL_5KPS_1071/32/31:39No text annotation
Not in a motif group
homologous
HL_5UD5_002
HL_49288.1
HL_5KPS_1081/32/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5X6B_003
HL_22280.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5KPS_0011/27/30:32,
1/27/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.2
IL_5KPS_0021/27/44:45,
1/27/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_5KPS_0031/27/47:52,
1/27/359:361
No text annotation
Not in a motif group
geometric
IL_5J7L_003
IL_11178.1
IL_5KPS_0041/27/54:56,
1/27/356:357
Minor groove platform
Not in a motif group
homologous
IL_5J7L_004
IL_93353.1
IL_5KPS_0051/27/63:66,
1/27/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_5KPS_0061/27/67:69,
1/27/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_5KPS_0071/27/70:73,
1/27/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_5KPS_0081/27/75:76,
1/27/93:95
No text annotation
Not in a motif group
IL_5KPS_0091/27/128:131,
1/27/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_5KPS_0101/27/132:136,
1/27/227:230
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_5KPS_0111/27/144:146,
1/27/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_5KPS_0121/27/147:153,
1/27/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_5KPS_0131/27/203:206,
1/27/213:214
Minor groove platform
Not in a motif group
geometric
IL_3MXH_005
IL_15052.1
IL_5KPS_0141/27/242:247,
1/27/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_5KPS_0151/27/249:252,
1/27/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_5KPS_0161/27/292:293,
1/27/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_5KPS_0171/27/367:369,
1/27/392:393
Single bulged U
Not in a motif group
homologous
IL_5J7L_017
IL_83039.13
IL_5KPS_0181/27/371:375,
1/27/389:390
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_5KPS_0191/27/375:376,
1/27/387:389
Single bulged G
Not in a motif group
homologous
IL_4LFB_016
IL_00225.2
IL_5KPS_0201/27/409:416,
1/27/427:433
No text annotation
Not in a motif group
homologous
IL_5J7L_020
IL_28026.1
IL_5KPS_0211/27/440:442,
1/27/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_5KPS_0221/27/446:450,
1/27/483:488
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_88269.3
IL_5KPS_0231/27/450:455,
1/27/477:483
No text annotation
Not in a motif group
geometric
IL_5J7L_023
IL_70801.1
IL_5KPS_0241/27/504:511,
1/27/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_5KPS_0251/27/515:521,
1/27/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_5KPS_0261/27/569:575,
1/27/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_5KPS_0271/27/580:584,
1/27/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_5KPS_0281/27/594:596,
1/27/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.1
IL_5KPS_0291/27/597:598,
1/27/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_5KPS_0301/27/605:612,
1/27/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_5KPS_0311/27/654:655,
1/27/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_5KPS_0321/27/659:660,
1/27/745:747
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_5KPS_0331/27/662:666,
1/27/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_5KPS_0341/27/673:678,
1/27/712:717
No text annotation
Not in a motif group
homologous
IL_5J7L_034
IL_04668.1
IL_5KPS_0351/27/684:688,
1/27/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_5KPS_0361/27/774:778,
1/27/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_5KPS_0371/27/779:783,
1/27/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_5KPS_0381/27/887:894,
1/27/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_5KPS_0391/27/922:923,
1/27/1393:1395
Single bulged A
Not in a motif group
homologous
IL_6CZR_147
IL_37497.2
IL_5KPS_0401/27/925:927,
1/27/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.2
IL_5KPS_0411/27/933:935,
1/27/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_4LFB_037
IL_47078.1
IL_5KPS_0421/27/953:954,
1/27/1226:1228
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_5KPS_0431/27/993:997,
1/27/1044:1045
Minor groove platform
Not in a motif group
homologous
IL_5J7L_043
IL_47078.1
IL_5KPS_0441/27/998:999,
1/27/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.2
IL_5KPS_0451/27/1048:1050,
1/27/1208:1209
Single bulged U
Not in a motif group
homologous
IL_4LFB_042
IL_83039.13
IL_5KPS_0461/27/1051:1056,
1/27/1204:1207
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_473
IL_30621.2
IL_5KPS_0471/27/1057:1058,
1/27/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_5KPS_0481/27/1060:1061,
1/27/1195:1197
Single bulged A
Not in a motif group
homologous
IL_5J7L_049
IL_37497.2
IL_5KPS_0491/27/1061:1063,
1/27/1193:1195
No text annotation
Not in a motif group
geometric
IL_4LFB_047
IL_95997.1
IL_5KPS_0501/27/1124:1128,
1/27/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_5KPS_0511/27/1129:1132,
1/27/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_5KPS_0521/27/1158:1161,
1/27/1175:1181
No text annotation
Not in a motif group
homologous
IL_5J7L_053
IL_42032.1
IL_5KPS_0531/27/1247:1253,
1/27/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_5KPS_0541/27/1255:1258,
1/27/1277:1282
No text annotation
Not in a motif group
homologous
IL_5J7L_055
IL_75461.4
IL_5KPS_0551/27/1259:1263,
1/27/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_5KPS_0561/27/1303:1308,
1/27/1329:1334
No text annotation
Not in a motif group
homologous
IL_4LFB_055
IL_19954.2
IL_5KPS_0571/27/1399:1401,
1/27/1501:1504
No text annotation
Not in a motif group
homologous
IL_5J7L_058
IL_36143.3
IL_5KPS_0581/27/1401:1404,
1/27/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_5KPS_0591/27/1405:1407,
1/27/1494:1496
No text annotation
Not in a motif group
geometric
IL_5MWI_007
IL_95997.1
IL_5KPS_0601/27/1407:1409,
1/27/1491:1494
Decoding loop related
Not in a motif group
geometric
IL_3C3Z_002
IL_64417.1
IL_5KPS_0611/27/1412:1414,
1/27/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_5KPS_0621/27/1416:1419,
1/27/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_5KPS_0631/27/1430:1435,
1/27/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_5KPS_0641/27/1440:1442,
1/27/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.2
IL_5KPS_0651/27/1445:1448,
1/27/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5
IL_5KPS_0661/28/24:30,
1/28/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_245
IL_66414.6
IL_5KPS_0671/28/36:37,
1/28/442:444
Single bulged A
Not in a motif group
homologous
IL_4WF9_002
IL_37497.2
IL_5KPS_0681/28/43:44,
1/28/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_5KPS_0691/28/81:85,
1/28/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_5KPS_0701/28/183:184,
1/28/212:214
Single stack bend
Not in a motif group
homologous
IL_5J7L_249
IL_76488.2
IL_5KPS_0711/28/188:194,
1/28/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5J7L_250
IL_04346.7
IL_5KPS_0721/28/239:245,
1/28/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_5KPS_0731/28/269:271,
1/28/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_5KPS_0741/28/274:282,
1/28/358:363
No text annotation
Not in a motif group
IL_5KPS_0751/28/293:295,
1/28/343:347
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_5KPS_0761/28/481:484,
1/28/496:509
No text annotation
Not in a motif group
geometric
IL_5J7L_255
IL_60992.6
IL_5KPS_0771/28/536:539,
1/28/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.9
IL_5KPS_0781/28/564:566,
1/28/575:577
No text annotation
Not in a motif group
geometric
IL_5J7L_257
IL_95997.1
IL_5KPS_0791/28/606:610,
1/28/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_5KPS_0801/28/672:674,
1/28/806:808
No text annotation
Not in a motif group
homologous
IL_4WF9_020
IL_95997.1
IL_5KPS_0811/28/674:678,
1/28/799:806
No text annotation
Not in a motif group
geometric
IL_7RQB_018
IL_17470.6
IL_5KPS_0821/28/697:698,
1/28/763:765
Single bulged A
Not in a motif group
homologous
IL_5J7L_261
IL_37497.2
IL_5KPS_0831/28/702:703,
1/28/728:730
Single bulged G
Not in a motif group
homologous
IL_4WF9_023
IL_00225.2
IL_5KPS_0841/28/703:707,
1/28/724:728
Triple sheared
Not in a motif group
geometric
IL_7RQB_021
IL_56467.8
IL_5KPS_0851/28/738:740,
1/28/757:758
Major groove platform
Not in a motif group
homologous
IL_4WF9_026
IL_27635.1
IL_5KPS_0861/28/775:777,
1/28/787:791
Multiple bulged bases
Not in a motif group
homologous
IL_7A0S_021
IL_90991.6
IL_5KPS_0871/28/837:838,
1/28/940:942
Single stack bend
Not in a motif group
homologous
IL_4WF9_028
IL_92001.1
IL_5KPS_0881/28/844:847,
1/28/933:934
Other IL
Not in a motif group
homologous
IL_5J7L_267
IL_92001.1
IL_5KPS_0891/28/847:848,
1/28/930:933
Stack outside cWW
Not in a motif group
geometric
IL_5J7L_268
IL_37629.1
IL_5KPS_0901/28/850:851,
1/28/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.2
IL_5KPS_0911/28/856:862,
1/28/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_5J7L_270
IL_93830.3
IL_5KPS_0921/28/862:863,
1/28/913:915
Single bulged G
Not in a motif group
homologous
IL_5J7L_271
IL_00225.2
IL_5KPS_0931/28/864:868,
1/28/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_5KPS_0941/28/870:872,
1/28/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_95997.1
IL_5KPS_0951/28/875:879,
1/28/898:902
Triple sheared
Not in a motif group
homologous
IL_5J7L_274
IL_56467.8
IL_5KPS_0961/28/880:881,
1/28/895:897
Single bulged A
Not in a motif group
homologous
IL_7RQB_033
IL_37497.2
IL_5KPS_0971/28/994:996,
1/28/1159:1160
Single bulged C
Not in a motif group
homologous
IL_5J7L_276
IL_61258.12
IL_5KPS_0981/28/998:1002,
1/28/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_4WF9_036
IL_89002.2
IL_5KPS_0991/28/1004:1011,
1/28/1150:1151
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_5J7L_278
IL_15861.7
IL_5KPS_1001/28/1011:1013,
1/28/1149:1150
Single bulged U
Not in a motif group
homologous
IL_5J7L_279
IL_83039.13
IL_5KPS_1011/28/1018:1024,
1/28/1140:1144
No text annotation
Not in a motif group
homologous
IL_4WF9_039
IL_57188.3
IL_5KPS_1021/28/1024:1030,
1/28/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_5KPS_1031/28/1031:1034,
1/28/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_041
IL_82068.2
IL_5KPS_1041/28/1038:1041,
1/28/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.2
IL_5KPS_1051/28/1043:1051,
1/28/1108:1112
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_5KPS_1061/28/1059:1062,
1/28/1076:1079
No text annotation
Not in a motif group
homologous
IL_5J7L_285
IL_23544.2
IL_5KPS_1071/28/1087:1090,
1/28/1101:1102
No text annotation
Not in a motif group
homologous
IL_6PRV_002
NA
IL_5KPS_1081/28/1196:1198,
1/28/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_4WF9_044
IL_52767.2
IL_5KPS_1091/28/1202:1206,
1/28/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_5KPS_1101/28/1208:1215,
1/28/1234:1238
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_5KPS_1111/28/1262:1269,
1/28/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_5KPS_1121/28/1310:1313,
1/28/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4WF9_049
IL_50694.2
IL_5KPS_1131/28/1319:1323,
1/28/1331:1333
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_63596.6
IL_5KPS_1141/28/1351:1355,
1/28/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_5KPS_1151/28/1357:1361,
1/28/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_5KPS_1161/28/1415:1416,
1/28/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_5KPS_1171/28/1417:1421,
1/28/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_5KPS_1181/28/1432:1435,
1/28/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_5KPS_1191/28/1437:1440,
1/28/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_5J7L_297
IL_04059.1
IL_5KPS_1201/28/1450:1451,
1/28/1459:1461
No text annotation
Not in a motif group
IL_5KPS_1211/28/1468:1471,
1/28/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_5KPS_1221/28/1474:1478,
1/28/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_5KPS_1231/28/1481:1482,
1/28/1507:1510
No text annotation
Not in a motif group
homologous
IL_5J7L_301
IL_67474.4
IL_5KPS_1241/28/1489:1491,
1/28/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.2
IL_5KPS_1251/28/1526:1529,
1/28/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_5KPS_1261/28/1651:1656,
1/28/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_5KPS_1271/28/1663:1665,
1/28/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_5J7L_305
IL_54997.7
IL_5KPS_1281/28/1666:1669,
1/28/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4V9F_061
IL_50694.2
IL_5KPS_1291/28/1669:1674,
1/28/1990:1993
Intercalated tWH
Not in a motif group
homologous
IL_5J7L_307
IL_82842.2
IL_5KPS_1301/28/1686:1691,
1/28/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_5J7L_308
IL_65969.2
IL_5KPS_1311/28/1712:1718,
1/28/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_5KPS_1321/28/1720:1724,
1/28/1736:1740
Triple sheared
Not in a motif group
homologous
IL_5J7L_310
IL_56467.8
IL_5KPS_1331/28/1727:1728,
1/28/1731:1733
Single bulged C
Not in a motif group
geometric
IL_5J7L_311
IL_61258.12
IL_5KPS_1341/28/1770:1771,
1/28/1980:1982
Single bulged A
Not in a motif group
homologous
IL_7A0S_064
IL_37497.2
IL_5KPS_1351/28/1798:1804,
1/28/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_5J7L_313
IL_17069.3
IL_5KPS_1361/28/1837:1840,
1/28/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_5KPS_1371/28/1841:1842,
1/28/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_5KPS_1381/28/1846:1849,
1/28/1893:1894
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.6
IL_5KPS_1391/28/1864:1867,
1/28/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.1
IL_5KPS_1401/28/1933:1934,
1/28/1964:1967
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_318
IL_59677.2
IL_5KPS_1411/28/1934:1945,
1/28/1961:1964
No text annotation
Not in a motif group
homologous
IL_4WF9_077
IL_81589.2
IL_5KPS_1421/28/2050:2052,
1/28/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.1
IL_5KPS_1431/28/2054:2056,
1/28/2612:2615
No text annotation
Not in a motif group
homologous
IL_5J7L_321
IL_54678.5
IL_5KPS_1441/28/2067:2069,
1/28/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7A0S_075
IL_83039.13
IL_5KPS_1451/28/2070:2071,
1/28/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.2
IL_5KPS_1461/28/2081:2083,
1/28/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.7
IL_5KPS_1471/28/2085:2087,
1/28/2232:2234
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_95997.1
IL_5KPS_1481/28/2103:2105,
1/28/2184:2186
No text annotation
Not in a motif group
geometric
IL_4NGF_002
IL_95997.1
IL_5KPS_1491/28/2105:2121,
1/28/2177:2184
No text annotation
Not in a motif group
IL_5KPS_1501/28/2202:2204,
1/28/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.13
IL_5KPS_1511/28/2350:2353,
1/28/2364:2367
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.9
IL_5KPS_1521/28/2401:2403,
1/28/2414:2415
No text annotation
Not in a motif group
IL_5KPS_1531/28/2453:2454,
1/28/2498:2500
Single stack bend
Not in a motif group
homologous
IL_4WF9_089
IL_76488.2
IL_5KPS_1541/28/2454:2455,
1/28/2496:2498
Major groove platform
Not in a motif group
geometric
IL_4V9F_082
IL_27635.1
IL_5KPS_1551/28/2456:2459,
1/28/2493:2495
Major groove platform with extra pair
Not in a motif group
geometric
IL_7RQB_093
IL_63450.2
IL_5KPS_1561/28/2459:2461,
1/28/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_337
IL_92788.2
IL_5KPS_1571/28/2466:2470,
1/28/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_5KPS_1581/28/2507:2509,
1/28/2579:2582
Major groove platform with extra pair
Not in a motif group
geometric
IL_7RQB_093
IL_63450.2
IL_5KPS_1591/28/2510:2512,
1/28/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_340
IL_90933.2
IL_5KPS_1601/28/2512:2513,
1/28/2571:2574
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_5KPS_1611/28/2522:2523,
1/28/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_7RQB_099
IL_95601.3
IL_5KPS_1621/28/2591:2592,
1/28/2601:2603
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.2
IL_5KPS_1631/28/2636:2640,
1/28/2774:2782
No text annotation
Not in a motif group
homologous
IL_5J7L_345
IL_04638.1
IL_5KPS_1641/28/2652:2658,
1/28/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
homologous
IL_7RQB_103
IL_16458.1
IL_5KPS_1651/28/2680:2684,
1/28/2725:2727
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.6
IL_5KPS_1661/28/2687:2691,
1/28/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_5KPS_1671/28/2695:2696,
1/28/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_4WF9_103
IL_71530.2
IL_5KPS_1681/28/2737:2742,
1/28/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_5KPS_1691/28/2806:2811,
1/28/2889:2892
No text annotation
Not in a motif group
geometric
IL_5J7L_351
IL_49460.2
IL_5KPS_1701/28/2838:2839,
1/28/2878:2880
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_352
IL_16396.2
IL_5KPS_1711/28/2843:2846,
1/28/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_5KPS_1721/28/2847:2852,
1/28/2865:2869
No text annotation
Not in a motif group
homologous
IL_5J7L_354
IL_83162.5
IL_5KPS_1731/29/17:18,
1/29/65:67
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_355
IL_37497.2
IL_5KPS_1741/29/23:28,
1/29/56:60
No text annotation
Not in a motif group
homologous
IL_5J7L_356
IL_18472.2
IL_5KPS_1751/29/30:31,
1/29/51:54
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_357
IL_09061.6
IL_5KPS_1761/29/34:38,
1/29/44:48
Symmetric double minor groove platform
Not in a motif group
homologous
IL_5J7L_358
IL_58103.6
IL_5KPS_1771/29/71:79,
1/29/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_5J7L_359
IL_56455.3

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5KPS_0011/27/46:47,
1/27/361:367,
1/27/393:395
No text annotation
Not in a motif group
J3_5KPS_0021/27/586:588,
1/27/651:654,
1/27/754:755
No text annotation
Not in a motif group
J3_5KPS_0031/27/672:673,
1/27/717:725,
1/27/732:734
No text annotation
Not in a motif group
J3_5KPS_0041/27/826:829,
1/27/857:861,
1/27/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_5KPS_0051/27/936:939,
1/27/1344:1350,
1/27/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_5KPS_0061/27/943:946,
1/27/1235:1237,
1/27/1337:1340
No text annotation
Not in a motif group
J3_5KPS_0071/27/955:962,
1/27/973:984,
1/27/1221:1225
No text annotation
Not in a motif group
J3_5KPS_0081/27/990:993,
1/27/1045:1047,
1/27/1210:1215
No text annotation
Not in a motif group
J3_5KPS_0091/27/1003:1006,
1/27/1023:1027,
1/27/1034:1037
No text annotation
Not in a motif group
J3_5KPS_0101/27/1063:1068,
1/27/1107:1113,
1/27/1187:1193
No text annotation
Not in a motif group
J3_5KPS_0111/27/1073:1074,
1/27/1083:1087,
1/27/1098:1102
No text annotation
Not in a motif group
homologous
J3_6CZR_024
NA
J3_5KPS_0121/27/1116:1118,
1/27/1155:1158,
1/27/1181:1184
No text annotation
Not in a motif group
J3_5KPS_0131/27/1237:1241,
1/27/1296:1303,
1/27/1334:1337
No text annotation
Not in a motif group
J3_5KPS_0141/28/30:31,
1/28/474:481,
1/28/509:510
No text annotation
Not in a motif group
J3_5KPS_0151/28/56:57,
1/28/70:76,
1/28/110:114
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA
J3_5KPS_0161/28/683:689,
1/28/773:775,
1/28/791:794
No text annotation
Not in a motif group
J3_5KPS_0171/28/698:700,
1/28/732:736,
1/28/760:763
No text annotation
Not in a motif group
J3_5KPS_0181/28/1055:1057,
1/28/1081:1087,
1/28/1102:1104
No text annotation
Not in a motif group
J3_5KPS_0191/28/1298:1303,
1/28/1625:1627,
1/28/1639:1642
No text annotation
Not in a motif group
homologous
J3_5J7L_041
NA
J3_5KPS_0201/28/1306:1309,
1/28/1605:1611,
1/28/1620:1622
No text annotation
Not in a motif group
homologous
J3_7A0S_007
NA
J3_5KPS_0211/28/1344:1349,
1/28/1382:1385,
1/28/1402:1403
No text annotation
Not in a motif group
homologous
J3_5J7L_043
NA
J3_5KPS_0221/28/2091:2093,
1/28/2196:2200,
1/28/2223:2228
No text annotation
Not in a motif group
homologous
J3_5J7L_044
NA
J3_5KPS_0231/28/2295:2299,
1/28/2317:2323,
1/28/2332:2337
No text annotation
Not in a motif group
J3_5KPS_0241/28/2517:2520,
1/28/2545:2547,
1/28/2561:2567
No text annotation
Not in a motif group
homologous
J3_5J7L_046
NA
J3_5KPS_0251/28/2789:2791,
1/28/2805:2806,
1/28/2892:2894
No text annotation
Not in a motif group
homologous
J3_5J7L_047
NA
J3_5KPS_0261/28/2812:2815,
1/28/2831:2836,
1/28/2882:2888
No text annotation
Not in a motif group
homologous
J3_5J7L_048
NA
J3_5KPS_0271/29/10:16,
1/29/68:70,
1/29/106:110
No text annotation
Not in a motif group
homologous
J3_5J7L_049
NA

Problematic loops

No problematic loops


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