5KPS Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/27/12:22 | NA | NA | ||
| 1/27/81:88 | NA | NA | ||
| 1/27/158:163 | NA | NA | ||
| 1/27/186:191 | NA | NA | ||
| 1/27/206:213 | NA | NA | ||
| 1/27/259:267 | NA | NA | ||
| 1/27/296:301 | NA | NA | ||
| 1/27/320:333 | NA | NA | ||
| 1/27/342:347 | NA | NA | ||
| 1/27/379:384 | NA | NA | ||
| 1/27/419:424 | NA | NA | ||
| 1/27/462:470 | NA | NA | ||
| 1/27/522:527 | NA | NA | ||
| 1/27/617:623 | NA | NA | ||
| 1/27/689:698 | NA | NA | ||
| 1/27/726:731 | NA | NA | ||
| 1/27/786:796 | NA | NA | ||
| 1/27/840:846 | NA | NA | ||
| 1/27/862:867 | NA | NA | ||
| 1/27/897:902 | NA | NA | ||
| 1/27/963:972 | NA | NA | ||
| 1/27/1012:1017 | NA | NA | ||
| 1/27/1027:1034 | NA | NA | ||
| 1/27/1076:1081 | NA | NA | ||
| 1/27/1089:1096 | NA | NA | ||
| 1/27/1134:1140 | NA | NA | ||
| 1/27/1165:1171 | NA | NA | ||
| 1/27/1265:1270 | NA | NA | ||
| 1/27/1314:1323 | NA | NA | ||
| 1/27/1356:1366 | NA | NA | ||
| 1/27/1449:1454 | NA | NA | ||
| 1/27/1515:1520 | NA | NA | ||
| 1/28/59:68 | geometric HL_4GXY_003 | NA HL_67719.1* | ||
| 1/28/87:95 | geometric HL_5J7L_135 | NA HL_17926.5* | ||
| 1/28/123:128 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
| 1/28/137:142 | NA | NA | ||
| 1/28/158:168 | geometric HL_5J7L_138 | NA HL_81820.1* | ||
| 1/28/194:201 | homologous HL_7RQB_006 | NA HL_23481.5* | ||
| 1/28/225:230 | geometric HL_5J7L_140 | NA HL_35894.3* | ||
| 1/28/246:252 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
| 1/28/305:312 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
| 1/28/327:335 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
| 1/28/382:392 | homologous HL_7RQB_013 | NA HL_91503.3* | ||
| 1/28/410:417 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
| 1/28/462:467 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
| 1/28/487:493 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
| 1/28/545:548 | homologous HL_7RQB_017 | NA | ||
| 1/28/566:575 | homologous HL_7RQB_018 | NA HL_33239.17* | ||
| 1/28/611:617 | geometric HL_361D_002 | NA HL_18218.2* | ||
| 1/28/629:634 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
| 1/28/641:647 | homologous HL_7RQB_021 | NA HL_02361.6* | ||
| 1/28/712:719 | homologous HL_7RQB_022 | NA HL_93727.5* | ||
| 1/28/744:753 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
| 1/28/779:785 | Other HL geometric HL_2NUE_001 | NA HL_79299.11* | ||
| 1/28/826:831 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
| 1/28/884:892 | NA | NA | ||
| 1/28/954:963 | geometric HL_3RG5_006 | NA HL_83315.1* | ||
| 1/28/978:985 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
| 1/28/1064:1074 | geometric HL_5J7L_161 | NA HL_92304.3* | ||
| 1/28/1092:1099 | homologous HL_7RQB_030 | NA | ||
| 1/28/1169:1180 | NA | NA | ||
| 1/28/1222:1227 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
| 1/28/1281:1289 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
| 1/28/1324:1330 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
| 1/28/1363:1368 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
| 1/28/1389:1398 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
| 1/28/1451:1459 | NA | NA | ||
| 1/28/1492:1498 | homologous HL_7RQB_038 | NA HL_86880.5* | ||
| 1/28/1533:1538 | NA | NA | ||
| 1/28/1565:1568 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
| 1/28/1612:1619 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
| 1/28/1630:1636 | GNRA with one bulged base geometric HL_5J7L_174 | NA HL_02361.6* | ||
| 1/28/1691:1696 | homologous HL_7RQB_042 | NA HL_79299.11* | ||
| 1/28/1728:1731 | geometric HL_5J7L_176 | NA HL_46546.1* | ||
| 1/28/1752:1756 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
| 1/28/1777:1787 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
| 1/28/1806:1811 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
| 1/28/1868:1873 | Other HL geometric HL_2CZJ_007 | NA HL_79299.11* | ||
| 1/28/1910:1920 | geometric HL_5TBW_049 | NA HL_98248.1* | ||
| 1/28/1949:1957 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
| 1/28/2027:2036 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
| 1/28/2142:2149 | NA | NA | ||
| 1/28/2209:2215 | geometric HL_5J7L_185 | NA HL_16845.5* | ||
| 1/28/2248:2256 | homologous HL_7RQB_053 | NA | ||
| 1/28/2264:2276 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
| 1/28/2303:2313 | homologous HL_7RQB_055 | NA HL_11805.3* | ||
| 1/28/2324:2331 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
| 1/28/2356:2361 | Other HL geometric HL_5J7L_190 | NA HL_43074.18* | ||
| 1/28/2374:2379 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
| 1/28/2404:2413 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
| 1/28/2471:2479 | homologous HL_7RQB_060 | NA HL_36421.5* | ||
| 1/28/2528:2535 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
| 1/28/2551:2557 | homologous HL_7RQB_062 | NA | ||
| 1/28/2594:2599 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
| 1/28/2658:2663 | GNRA geometric HL_1MZP_001 | NA HL_43074.18* | ||
| 1/28/2701:2706 | Ribsomal LSU H95 geometric HL_5J7L_198 | NA HL_67719.1* | ||
| 1/28/2745:2759 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
| 1/28/2795:2801 | geometric HL_2Y8W_001 | NA HL_69459.1* | ||
| 1/28/2819:2827 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
| 1/28/2856:2861 | homologous HL_7RQB_069 | NA HL_43074.18* | ||
| 1/29/38:44 | NA | NA | ||
| 1/29/86:90 | NA | NA | ||
| 1/31/13:22 | NA | NA | ||
| 1/31/31:39 | NA | NA | ||
| 1/31/53:61 | NA | NA | ||
| 1/32/13:22 | NA | NA | ||
| 1/32/31:39 | NA | NA | ||
| 1/32/53:61 | NA | NA |
Problematic loops
No problematic loops
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/27/30:32, 1/27/552:553 | NA | NA | ||
| 1/27/44:45, 1/27/396:398 | NA | NA | ||
| 1/27/47:52, 1/27/359:361 | NA | NA | ||
| 1/27/54:56, 1/27/356:357 | NA | NA | ||
| 1/27/63:66, 1/27/103:104 | NA | NA | ||
| 1/27/67:69, 1/27/99:102 | NA | NA | ||
| 1/27/70:73, 1/27/97:98 | NA | NA | ||
| 1/27/75:76, 1/27/93:95 | NA | NA | ||
| 1/27/128:131, 1/27/231:233 | NA | NA | ||
| 1/27/132:136, 1/27/227:230 | NA | NA | ||
| 1/27/144:146, 1/27/176:178 | NA | NA | ||
| 1/27/147:153, 1/27/168:175 | NA | NA | ||
| 1/27/203:206, 1/27/213:214 | NA | NA | ||
| 1/27/242:247, 1/27/277:284 | NA | NA | ||
| 1/27/249:252, 1/27/274:275 | NA | NA | ||
| 1/27/292:293, 1/27/304:308 | NA | NA | ||
| 1/27/367:369, 1/27/392:393 | NA | NA | ||
| 1/27/371:375, 1/27/389:390 | NA | NA | ||
| 1/27/375:376, 1/27/387:389 | NA | NA | ||
| 1/27/409:416, 1/27/427:433 | NA | NA | ||
| 1/27/440:442, 1/27/492:497 | NA | NA | ||
| 1/27/446:450, 1/27/483:488 | NA | NA | ||
| 1/27/450:455, 1/27/477:483 | NA | NA | ||
| 1/27/504:511, 1/27/540:541 | NA | NA | ||
| 1/27/515:521, 1/27/528:536 | NA | NA | ||
| 1/27/569:575, 1/27/880:881 | NA | NA | ||
| 1/27/580:584, 1/27/757:761 | NA | NA | ||
| 1/27/594:596, 1/27/644:645 | NA | NA | ||
| 1/27/597:598, 1/27/640:643 | NA | NA | ||
| 1/27/605:612, 1/27/628:633 | NA | NA | ||
| 1/27/654:655, 1/27/751:754 | NA | NA | ||
| 1/27/659:660, 1/27/745:747 | NA | NA | ||
| 1/27/662:666, 1/27/740:743 | NA | NA | ||
| 1/27/673:678, 1/27/712:717 | NA | NA | ||
| 1/27/684:688, 1/27/699:706 | NA | NA | ||
| 1/27/774:778, 1/27/804:805 | NA | NA | ||
| 1/27/779:783, 1/27/799:803 | NA | NA | ||
| 1/27/887:894, 1/27/905:910 | NA | NA | ||
| 1/27/922:923, 1/27/1393:1395 | NA | NA | ||
| 1/27/925:927, 1/27/1390:1391 | NA | NA | ||
| 1/27/933:935, 1/27/1380:1384 | NA | NA | ||
| 1/27/953:954, 1/27/1226:1228 | NA | NA | ||
| 1/27/993:997, 1/27/1044:1045 | NA | NA | ||
| 1/27/998:999, 1/27/1041:1043 | NA | NA | ||
| 1/27/1048:1050, 1/27/1208:1209 | NA | NA | ||
| 1/27/1051:1056, 1/27/1204:1207 | NA | NA | ||
| 1/27/1057:1058, 1/27/1199:1203 | NA | NA | ||
| 1/27/1060:1061, 1/27/1195:1197 | NA | NA | ||
| 1/27/1061:1063, 1/27/1193:1195 | NA | NA | ||
| 1/27/1124:1128, 1/27/1144:1149 | NA | NA | ||
| 1/27/1129:1132, 1/27/1142:1143 | NA | NA | ||
| 1/27/1158:1161, 1/27/1175:1181 | NA | NA | ||
| 1/27/1247:1253, 1/27/1284:1290 | NA | NA | ||
| 1/27/1255:1258, 1/27/1277:1282 | NA | NA | ||
| 1/27/1259:1263, 1/27/1272:1276 | NA | NA | ||
| 1/27/1303:1308, 1/27/1329:1334 | NA | NA | ||
| 1/27/1399:1401, 1/27/1501:1504 | NA | NA | ||
| 1/27/1401:1404, 1/27/1497:1501 | NA | NA | ||
| 1/27/1405:1407, 1/27/1494:1496 | NA | NA | ||
| 1/27/1407:1409, 1/27/1491:1494 | NA | NA | ||
| 1/27/1412:1414, 1/27/1486:1488 | NA | NA | ||
| 1/27/1416:1419, 1/27/1481:1484 | NA | NA | ||
| 1/27/1430:1435, 1/27/1466:1470 | NA | NA | ||
| 1/27/1440:1442, 1/27/1460:1461 | NA | NA | ||
| 1/27/1445:1448, 1/27/1455:1457 | NA | NA | ||
| 1/28/24:30, 1/28/510:516 | Triple sheared with non-canonical cWW homologous IL_7RQB_001 | NA IL_66414.5* | ||
| 1/28/36:37, 1/28/442:444 | Single bulged A homologous IL_7RQB_002 | NA IL_80007.16* | ||
| 1/28/43:44, 1/28/434:436 | Minor groove platform homologous IL_7RQB_003 | NA IL_06437.11* | ||
| 1/28/81:85, 1/28/97:105 | Kink-turn homologous IL_7RQB_004 | NA IL_29549.9* | ||
| 1/28/183:184, 1/28/212:214 | Single stack bend homologous IL_7RQB_005 | NA IL_04038.4* | ||
| 1/28/188:194, 1/28/201:208 | 8x7 Sarcin-Ricin; G-bulge geometric IL_5J7L_250 | NA IL_04346.5* | ||
| 1/28/239:245, 1/28/253:258 | 7x6 Sarcin-Ricin; G-bulge homologous IL_7RQB_007 | NA IL_35110.5* | ||
| 1/28/269:271, 1/28/366:370 | geometric IL_5J7L_252 | NA IL_47972.1* | ||
| 1/28/274:282, 1/28/358:363 | NA | NA | ||
| 1/28/293:295, 1/28/343:347 | homologous IL_7RQB_013 | NA IL_69440.1* | ||
| 1/28/481:484, 1/28/496:509 | geometric IL_5J7L_255 | NA IL_60992.5* | ||
| 1/28/536:539, 1/28/554:557 | Double sheared geometric IL_5J7L_256 | NA IL_09705.7* | ||
| 1/28/564:566, 1/28/575:577 | geometric IL_5J7L_257 | NA IL_01312.13* | ||
| 1/28/606:610, 1/28/618:622 | AAA cross-strand stack homologous IL_7RQB_016 | NA IL_56467.6* | ||
| 1/28/672:674, 1/28/806:808 | homologous IL_7RQB_017 | NA IL_01312.13* | ||
| 1/28/674:678, 1/28/799:806 | geometric IL_7RQB_018 | NA IL_17470.5* | ||
| 1/28/697:698, 1/28/763:765 | Single bulged A homologous IL_7RQB_019 | NA IL_80007.16* | ||
| 1/28/702:703, 1/28/728:730 | Single bulged G homologous IL_7RQB_020 | NA IL_59137.10* | ||
| 1/28/703:707, 1/28/724:728 | Triple sheared geometric IL_7RQB_021 | NA IL_56467.6* | ||
| 1/28/738:740, 1/28/757:758 | Major groove platform geometric IL_4WF9_026 | NA IL_80663.10* | ||
| 1/28/775:777, 1/28/787:791 | Multiple bulged bases homologous IL_7RQB_023 | NA IL_90991.5* | ||
| 1/28/837:838, 1/28/940:942 | Single stack bend homologous IL_7RQB_024 | NA IL_04038.4* | ||
| 1/28/844:847, 1/28/933:934 | Other IL geometric IL_5J7L_267 | NA IL_31836.1* | ||
| 1/28/847:848, 1/28/930:933 | Stack outside cWW geometric IL_5J7L_268 | NA IL_37629.1* | ||
| 1/28/850:851, 1/28/926:928 | Single stack bend geometric IL_5J7L_269 | NA IL_04038.4* | ||
| 1/28/856:862, 1/28/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge geometric IL_5J7L_270 | NA IL_93830.2* | ||
| 1/28/862:863, 1/28/913:915 | Minor groove platform homologous IL_7RQB_028 | NA IL_06437.11* | ||
| 1/28/864:868, 1/28/909:912 | C-loop homologous IL_7RQB_029 | NA IL_63596.4* | ||
| 1/28/870:872, 1/28/905:907 | geometric IL_5J7L_273 | NA IL_01312.13* | ||
| 1/28/875:879, 1/28/898:902 | Triple sheared geometric IL_4WFL_001 | NA IL_56467.6* | ||
| 1/28/880:881, 1/28/895:897 | Single bulged A homologous IL_7RQB_033 | NA IL_80007.16* | ||
| 1/28/994:996, 1/28/1159:1160 | Single bulged C homologous IL_7RQB_035 | NA IL_61258.10* | ||
| 1/28/998:1002, 1/28/1153:1157 | UAA/GAN homologous IL_7RQB_036 | NA IL_53523.5* | ||
| 1/28/1004:1011, 1/28/1150:1151 | SSU/LSU pseudoknot geometric IL_5J7L_278 | NA IL_15861.6* | ||
| 1/28/1011:1013, 1/28/1149:1150 | Single bulged U homologous IL_7RQB_038 | NA IL_83039.11* | ||
| 1/28/1018:1024, 1/28/1140:1144 | homologous IL_7RQB_039 | NA IL_57188.3* | ||
| 1/28/1024:1030, 1/28/1124:1140 | geometric IL_5J7L_281 | NA IL_22615.1* | ||
| 1/28/1031:1034, 1/28/1121:1123 | Isolated non-canonical cWW with bulges homologous IL_7RQB_041 | NA IL_55456.1* | ||
| 1/28/1038:1041, 1/28/1114:1117 | Tandem non-canonical cWW pairs geometric IL_5J7L_283 | NA IL_85877.10* | ||
| 1/28/1043:1051, 1/28/1108:1112 | Kink-turn homologous IL_7RQB_042 | NA IL_90538.3* | ||
| 1/28/1059:1062, 1/28/1076:1079 | geometric IL_5J7L_285 | NA IL_23544.2* | ||
| 1/28/1087:1090, 1/28/1101:1102 | Major groove platform geometric IL_3OXE_003 | NA IL_80663.10* | ||
| 1/28/1196:1198, 1/28/1247:1250 | Isolated cWS basepair homologous IL_7RQB_045 | NA IL_67621.5* | ||
| 1/28/1202:1206, 1/28/1240:1243 | geometric IL_5J7L_287 | NA IL_91920.1* | ||
| 1/28/1208:1215, 1/28/1234:1238 | Kink-turn homologous IL_7RQB_047 | NA IL_29549.9* | ||
| 1/28/1262:1269, 1/28/2011:2017 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_049 | NA IL_04346.5* | ||
| 1/28/1310:1313, 1/28/1603:1604 | Major groove platform; stack outside cWW homologous IL_7RQB_050 | NA IL_70995.6* | ||
| 1/28/1319:1323, 1/28/1331:1333 | C-loop homologous IL_7RQB_051 | NA IL_63596.4* | ||
| 1/28/1351:1355, 1/28/1376:1380 | UAA/GAN homologous IL_7RQB_052 | NA IL_53523.5* | ||
| 1/28/1357:1361, 1/28/1370:1374 | tSH-tHW-tHS homologous IL_7RQB_053 | NA IL_39521.5* | ||
| 1/28/1415:1416, 1/28/1582:1587 | geometric IL_5J7L_294 | NA IL_90348.1* | ||
| 1/28/1417:1421, 1/28/1577:1581 | UAA/GAN homologous IL_7RQB_055 | NA IL_53523.5* | ||
| 1/28/1432:1435, 1/28/1557:1561 | Tandem non-canonical cWW pairs geometric IL_5J7L_296 | NA IL_85877.10* | ||
| 1/28/1437:1440, 1/28/1551:1555 | tSH-tHW homologous IL_7RQB_057 | NA IL_08757.3* | ||
| 1/28/1450:1451, 1/28/1459:1461 | NA | NA | ||
| 1/28/1468:1471, 1/28/1520:1524 | geometric IL_5J7L_299 | NA IL_68574.2* | ||
| 1/28/1474:1478, 1/28/1513:1517 | tSH-tHW-tHS geometric IL_5J7L_300 | NA IL_39521.5* | ||
| 1/28/1481:1482, 1/28/1507:1510 | geometric IL_5J7L_301 | NA IL_67474.3* | ||
| 1/28/1489:1491, 1/28/1499:1500 | Single bulged A homologous IL_7RQB_062 | NA IL_40508.4* | ||
| 1/28/1526:1529, 1/28/1542:1546 | UAA/GAN variation geometric IL_5J7L_303 | NA IL_81389.2* | ||
| 1/28/1651:1656, 1/28/2004:2006 | homologous IL_7RQB_064 | NA IL_12566.2* | ||
| 1/28/1663:1665, 1/28/1995:1997 | Isolated tWW turn homologous IL_7RQB_065 | NA IL_54997.5* | ||
| 1/28/1666:1669, 1/28/1993:1994 | Major groove platform; stack outside cWW geometric IL_4V9F_061 | NA IL_70995.6* | ||
| 1/28/1669:1674, 1/28/1990:1993 | Intercalated tWH homologous IL_7RQB_067 | NA IL_01312.13* | ||
| 1/28/1686:1691, 1/28/1696:1702 | tSH-tSH-tHH-tHS geometric IL_5J7L_308 | NA IL_66584.5* | ||
| 1/28/1712:1718, 1/28/1742:1746 | 6x5 Sarcin-Ricin; G-bulge geometric IL_5J7L_309 | NA IL_88269.2* | ||
| 1/28/1720:1724, 1/28/1736:1740 | Triple sheared geometric IL_5J7L_310 | NA IL_56467.6* | ||
| 1/28/1727:1728, 1/28/1731:1733 | Single bulged C geometric IL_5J7L_311 | NA IL_61258.10* | ||
| 1/28/1770:1771, 1/28/1980:1982 | Single bulged A homologous IL_7RQB_069 | NA IL_80007.16* | ||
| 1/28/1798:1804, 1/28/1813:1821 | Kink-turn related homologous IL_7RQB_070 | NA IL_17069.3* | ||
| 1/28/1837:1840, 1/28/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_071 | NA IL_31836.1* | ||
| 1/28/1841:1842, 1/28/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket geometric IL_5J7L_315 | NA IL_13730.12* | ||
| 1/28/1846:1849, 1/28/1893:1894 | Major groove minor groove platform; mini C-loop geometric IL_5J7L_316 | NA IL_09061.4* | ||
| 1/28/1864:1867, 1/28/1874:1878 | UAA/GAN related geometric IL_5J7L_317 | NA IL_81389.2* | ||
| 1/28/1933:1934, 1/28/1964:1967 | Multiple bulged bases geometric IL_5J7L_318 | NA IL_69632.1* | ||
| 1/28/1934:1945, 1/28/1961:1964 | geometric IL_4WF9_077 | NA IL_70285.1* | ||
| 1/28/2050:2052, 1/28/2617:2618 | Major groove platform homologous IL_7RQB_078 | NA IL_80663.10* | ||
| 1/28/2054:2056, 1/28/2612:2615 | geometric IL_5J7L_321 | NA IL_54678.3* | ||
| 1/28/2067:2069, 1/28/2442:2443 | Single bulged U homologous IL_7RQB_080 | NA IL_83039.11* | ||
| 1/28/2070:2071, 1/28/2438:2441 | Minor groove platform homologous IL_7RQB_081 | NA IL_06437.11* | ||
| 1/28/2081:2083, 1/28/2236:2239 | Isolated tHS basepair with bulges homologous IL_7RQB_082 | NA IL_38958.6* | ||
| 1/28/2085:2087, 1/28/2232:2234 | homologous IL_7RQB_083 | NA IL_01312.13* | ||
| 1/28/2103:2105, 1/28/2184:2186 | geometric IL_4NGF_002 | NA IL_01312.13* | ||
| 1/28/2105:2121, 1/28/2177:2184 | NA | NA | ||
| 1/28/2202:2204, 1/28/2220:2221 | Single bulged U geometric IL_5J7L_331 | NA IL_21340.1* | ||
| 1/28/2350:2353, 1/28/2364:2367 | Double sheared homologous IL_7RQB_089 | NA IL_09705.7* | ||
| 1/28/2401:2403, 1/28/2414:2415 | NA | NA | ||
| 1/28/2453:2454, 1/28/2498:2500 | Single stack bend homologous IL_7RQB_091 | NA IL_04038.4* | ||
| 1/28/2454:2455, 1/28/2496:2498 | Major groove platform geometric IL_4V9F_082 | NA IL_80663.10* | ||
| 1/28/2456:2459, 1/28/2493:2495 | Major groove platform with extra pair geometric IL_7RQB_093 | NA IL_87630.5* | ||
| 1/28/2459:2461, 1/28/2489:2493 | Major groove minor groove platform with extra cWW homologous IL_7RQB_094 | NA IL_96042.4* | ||
| 1/28/2466:2470, 1/28/2480:2484 | Triple sheared homologous IL_7RQB_095 | NA IL_56467.6* | ||
| 1/28/2507:2509, 1/28/2579:2582 | Major groove platform with extra pair geometric IL_7RQB_093 | NA IL_87630.5* | ||
| 1/28/2510:2512, 1/28/2574:2578 | Isolated non-canonical cWW with bulges homologous IL_7RQB_097 | NA IL_01312.13* | ||
| 1/28/2512:2513, 1/28/2571:2574 | geometric IL_5J7L_341 | NA IL_44093.1* | ||
| 1/28/2522:2523, 1/28/2540:2543 | Minor groove platform with intercalation homologous IL_7RQB_099 | NA IL_95601.1* | ||
| 1/28/2591:2592, 1/28/2601:2603 | Single bulged A homologous IL_7RQB_101 | NA IL_80007.16* | ||
| 1/28/2636:2640, 1/28/2774:2782 | tSH-tHS-tHW homologous IL_7RQB_102 | NA IL_34907.2* | ||
| 1/28/2652:2658, 1/28/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge homologous IL_7RQB_103 | NA IL_35110.5* | ||
| 1/28/2680:2684, 1/28/2725:2727 | C-loop homologous IL_7RQB_104 | NA IL_63596.4* | ||
| 1/28/2687:2691, 1/28/2718:2722 | homologous IL_7RQB_105 | NA IL_08296.3* | ||
| 1/28/2695:2696, 1/28/2711:2714 | Multiple bulged bases homologous IL_7RQB_106 | NA IL_77034.1* | ||
| 1/28/2737:2742, 1/28/2762:2767 | UAA/GAN with extra cWW homologous IL_7RQB_107 | NA IL_49767.4* | ||
| 1/28/2806:2811, 1/28/2889:2892 | geometric IL_5J7L_351 | NA IL_82988.1* | ||
| 1/28/2838:2839, 1/28/2878:2880 | Single bulged C homologous IL_7RQB_108 | NA IL_61258.10* | ||
| 1/28/2843:2846, 1/28/2870:2874 | homologous IL_7RQB_109 | NA IL_58764.1* | ||
| 1/28/2847:2852, 1/28/2865:2869 | homologous IL_7RQB_110 | NA IL_83162.3* | ||
| 1/29/17:18, 1/29/65:67 | NA | NA | ||
| 1/29/23:28, 1/29/56:60 | NA | NA | ||
| 1/29/30:31, 1/29/51:54 | NA | NA | ||
| 1/29/34:38, 1/29/44:48 | NA | NA | ||
| 1/29/71:79, 1/29/97:105 | NA | NA |
Problematic loops
No problematic loops
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/27/46:47, 1/27/361:367, 1/27/393:395 | NA | NA | ||
| 1/27/586:588, 1/27/651:654, 1/27/754:755 | NA | NA | ||
| 1/27/672:673, 1/27/717:725, 1/27/732:734 | NA | NA | ||
| 1/27/826:829, 1/27/857:861, 1/27/868:874 | NA | NA | ||
| 1/27/936:939, 1/27/1344:1350, 1/27/1372:1379 | NA | NA | ||
| 1/27/943:946, 1/27/1235:1237, 1/27/1337:1340 | NA | NA | ||
| 1/27/955:962, 1/27/973:984, 1/27/1221:1225 | NA | NA | ||
| 1/27/990:993, 1/27/1045:1047, 1/27/1210:1215 | NA | NA | ||
| 1/27/1003:1006, 1/27/1023:1027, 1/27/1034:1037 | NA | NA | ||
| 1/27/1063:1068, 1/27/1107:1113, 1/27/1187:1193 | NA | NA | ||
| 1/27/1073:1074, 1/27/1083:1087, 1/27/1098:1102 | NA | NA | ||
| 1/27/1116:1118, 1/27/1155:1158, 1/27/1181:1184 | NA | NA | ||
| 1/27/1237:1241, 1/27/1296:1303, 1/27/1334:1337 | NA | NA | ||
| 1/28/30:31, 1/28/474:481, 1/28/509:510 | NA | NA | ||
| 1/28/56:57, 1/28/70:76, 1/28/110:114 | homologous J3_7RQB_002 | NA | ||
| 1/28/683:689, 1/28/773:775, 1/28/791:794 | NA | NA | ||
| 1/28/698:700, 1/28/732:736, 1/28/760:763 | NA | NA | ||
| 1/28/1055:1057, 1/28/1081:1087, 1/28/1102:1104 | NA | NA | ||
| 1/28/1298:1303, 1/28/1625:1627, 1/28/1639:1642 | homologous J3_7RQB_007 | NA | ||
| 1/28/1306:1309, 1/28/1605:1611, 1/28/1620:1622 | homologous J3_7RQB_008 | NA | ||
| 1/28/1344:1349, 1/28/1382:1385, 1/28/1402:1403 | NA | NA | ||
| 1/28/2091:2093, 1/28/2196:2200, 1/28/2223:2228 | homologous J3_7RQB_010 | NA | ||
| 1/28/2295:2299, 1/28/2317:2323, 1/28/2332:2337 | NA | NA | ||
| 1/28/2517:2520, 1/28/2545:2547, 1/28/2561:2567 | homologous J3_7RQB_012 | NA | ||
| 1/28/2789:2791, 1/28/2805:2806, 1/28/2892:2894 | NA | NA | ||
| 1/28/2812:2815, 1/28/2831:2836, 1/28/2882:2888 | NA | NA | ||
| 1/29/10:16, 1/29/68:70, 1/29/106:110 | NA | NA |
Problematic loops
No problematic loops
Coloring options: