4UJC Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4UJC_001 | 1/A2/37:44 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_06192.2 | |
| HL_4UJC_002 | 1/A2/68:73 | No text annotation Not in a motif group | geometric HL_4O26_001 HL_56691.2 | |
| HL_4UJC_003 | 1/A2/89:95 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.7 | |
| HL_4UJC_004 | 1/A2/126:142 | No text annotation Not in a motif group | ||
| HL_4UJC_005 | 1/A2/200:209 | No text annotation Not in a motif group | ||
| HL_4UJC_006 | 1/A2/219:223 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_4UJC_007 | 1/A2/227:235 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.8 | |
| HL_4UJC_008 | 1/A2/279:290 | No text annotation Not in a motif group | ||
| HL_4UJC_009 | 1/A2/305:314 | No text annotation Not in a motif group | homologous HL_5TBW_009 HL_12078.2 | |
| HL_4UJC_010 | 1/A2/359:364 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_42097.1 | |
| HL_4UJC_011 | 1/A2/384:389 | No text annotation Not in a motif group | geometric HL_4O26_001 HL_56691.2 | |
| HL_4UJC_013 | 1/A2/1158:1163 | No text annotation Not in a motif group | ||
| HL_4UJC_014 | 1/A2/1297:1306 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_89380.2 | |
| HL_4UJC_015 | 1/A2/1343:1354 | No text annotation Not in a motif group | ||
| HL_4UJC_016 | 1/A2/1369:1374 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_42097.1 | |
| HL_4UJC_017 | 1/A2/1386:1391 | No text annotation Not in a motif group | ||
| HL_4UJC_018 | 1/A2/1416:1428 | No text annotation Not in a motif group | ||
| HL_4UJC_019 | 1/A2/1457:1466 | No text annotation Not in a motif group | ||
| HL_4UJC_020 | 1/A2/1540:1545 | No text annotation Not in a motif group | geometric HL_7RQB_011 HL_75407.1 | |
| HL_4UJC_021 | 1/A2/1572:1581 | No text annotation Not in a motif group | ||
| HL_4UJC_022 | 1/A2/1606:1614 | No text annotation Not in a motif group | homologous HL_8C3A_021 HL_33817.1 | |
| HL_4UJC_023 | 1/A2/1654:1659 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_4UJC_024 | 1/A2/1742:1748 | No text annotation Not in a motif group | ||
| HL_4UJC_025 | 1/A2/1795:1802 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_4UJC_026 | 1/A2/1842:1848 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.1 | |
| HL_4UJC_027 | 1/A2/1864:1871 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_4UJC_030 | 1/A2/2293:2298 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_42097.1 | |
| HL_4UJC_031 | 1/A2/2353:2361 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_89380.2 | |
| HL_4UJC_032 | 1/A2/2396:2404 | No text annotation Not in a motif group | geometric HL_7A0S_041 HL_26881.1 | |
| HL_4UJC_033 | 1/A2/2435:2440 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_76539.2 | |
| HL_4UJC_034 | 1/A2/2463:2469 | No text annotation Not in a motif group | ||
| HL_4UJC_035 | 1/A2/2500:2509 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.2 | |
| HL_4UJC_036 | 1/A2/2537:2544 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_4UJC_037 | 1/A2/2555:2560 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_42097.1 | |
| HL_4UJC_038 | 1/A2/2601:2609 | No text annotation Not in a motif group | homologous HL_5TBW_037 HL_60812.1 | |
| HL_4UJC_039 | 1/A2/2641:2647 | No text annotation Not in a motif group | homologous HL_8C3A_038 HL_86373.2 | |
| HL_4UJC_040 | 1/A2/2681:2689 | No text annotation Not in a motif group | ||
| HL_4UJC_041 | 1/A2/2715:2719 | No text annotation Not in a motif group | homologous HL_8C3A_040 HL_49678.1 | |
| HL_4UJC_042 | 1/A2/2769:2776 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_64430.2 | |
| HL_4UJC_043 | 1/A2/2787:2793 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.1 | |
| HL_4UJC_044 | 1/A2/2849:2854 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_4UJC_046 | 1/A2/3583:3587 | No text annotation Not in a motif group | homologous HL_5TBW_045 HL_20062.1 | |
| HL_4UJC_047 | 1/A2/3608:3618 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.5 | |
| HL_4UJC_048 | 1/A2/3637:3643 | GNRA Not in a motif group | homologous HL_5TBW_047 HL_42097.1 | |
| HL_4UJC_049 | 1/A2/3693:3698 | No text annotation Not in a motif group | homologous HL_8C3A_048 HL_42097.1 | |
| HL_4UJC_050 | 1/A2/3726:3736 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_71924.2 | |
| HL_4UJC_051 | 1/A2/3765:3773 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_51824.1 | |
| HL_4UJC_052 | 1/A2/3842:3851 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.6 | |
| HL_4UJC_053 | 1/A2/4069:4075 | No text annotation Not in a motif group | ||
| HL_4UJC_054 | 1/A2/4102:4109 | No text annotation Not in a motif group | ||
| HL_4UJC_055 | 1/A2/4153:4161 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.2 | |
| HL_4UJC_056 | 1/A2/4170:4182 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.6 | |
| HL_4UJC_057 | 1/A2/4210:4218 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_76406.4 | |
| HL_4UJC_058 | 1/A2/4230:4237 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_12078.2 | |
| HL_4UJC_059 | 1/A2/4261:4269 | No text annotation Not in a motif group | ||
| HL_4UJC_060 | 1/A2/4280:4287 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_4UJC_061 | 1/A2/4312:4322 | No text annotation Not in a motif group | geometric HL_4V83_139 HL_53597.2 | |
| HL_4UJC_062 | 1/A2/4377:4385 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_4UJC_063 | 1/A2/4433:4442 | No text annotation Not in a motif group | ||
| HL_4UJC_064 | 1/A2/4457:4463 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_43656.2 | |
| HL_4UJC_065 | 1/A2/4500:4505 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_42097.1 | |
| HL_4UJC_066 | 1/A2/4563:4568 | GNRA Not in a motif group | homologous HL_5TBW_065 HL_42097.1 | |
| HL_4UJC_067 | 1/A2/4606:4611 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_46680.1 | |
| HL_4UJC_068 | 1/A2/4648:4662 | No text annotation Not in a motif group | homologous HL_5TBW_067 HL_56677.7 | |
| HL_4UJC_069 | 1/A2/4862:4869 | No text annotation Not in a motif group | ||
| HL_4UJC_070 | 1/A2/4930:4938 | No text annotation Not in a motif group | homologous HL_5TBW_070 HL_27930.1 | |
| HL_4UJC_071 | 1/A2/4975:4984 | No text annotation Not in a motif group | ||
| HL_4UJC_072 | 1/A3/47:56 | No text annotation Not in a motif group | geometric HL_7A0S_001 HL_99167.1 | |
| HL_4UJC_073 | 1/A3/69:88 | No text annotation Not in a motif group | ||
| HL_4UJC_074 | 1/A3/108:111 | No text annotation Not in a motif group | ||
| HL_4UJC_075 | 1/A3/122:128 | No text annotation Not in a motif group | ||
| HL_4UJC_076 | 1/A4/28:51 | No text annotation Not in a motif group | ||
| HL_4UJC_077 | 1/A4/86:91 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_4UJC_078 | 1/AA/13:22 | No text annotation Not in a motif group | homologous HL_3TUP_001 HL_25462.2 | |
| HL_4UJC_079 | 1/AA/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_6UFG_007 HL_53597.2 | |
| HL_4UJC_080 | 1/AA/53:61 | No text annotation Not in a motif group | homologous HL_6UGG_006 NA | |
| HL_4UJC_081 | 1/AC/79:87 | No text annotation Not in a motif group | ||
| HL_4UJC_082 | 1/AC/161:166 | No text annotation Not in a motif group | ||
| HL_4UJC_084 | 1/AC/231:236 | No text annotation Not in a motif group | ||
| HL_4UJC_085 | 1/AC/263:270 | No text annotation Not in a motif group | ||
| HL_4UJC_086 | 1/AC/293:300 | No text annotation Not in a motif group | ||
| HL_4UJC_087 | 1/AC/304:313 | No text annotation Not in a motif group | ||
| HL_4UJC_088 | 1/C1/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_4UJC_089 | 1/C1/63:85 | No text annotation Not in a motif group | ||
| HL_4UJC_090 | 1/C1/156:162 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_4UJC_091 | 1/C1/196:203 | No text annotation Not in a motif group | ||
| HL_4UJC_093 | 1/C1/322:329 | T-loop with 1 bulged base Not in a motif group | geometric HL_5TBW_005 HL_89380.2 | |
| HL_4UJC_094 | 1/C1/377:387 | No text annotation Not in a motif group | geometric HL_4WSM_226 HL_22031.1 | |
| HL_4UJC_095 | 1/C1/416:421 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_4UJC_096 | 1/C1/441:452 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_4UJC_097 | 1/C1/462:467 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_4UJC_098 | 1/C1/498:504 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_4UJC_099 | 1/C1/539:544 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_4UJC_100 | 1/C1/569:581 | No text annotation Not in a motif group | ||
| HL_4UJC_101 | 1/C1/618:623 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_4UJC_102 | 1/C1/820:828 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_4UJC_103 | 1/C1/833:841 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_4UJC_104 | 1/C1/884:902 | No text annotation Not in a motif group | ||
| HL_4UJC_105 | 1/C1/957:966 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_4UJC_106 | 1/C1/994:999 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_4UJC_107 | 1/C1/1054:1064 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_4UJC_108 | 1/C1/1112:1121 | No text annotation Not in a motif group | ||
| HL_4UJC_109 | 1/C1/1141:1146 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_4UJC_110 | 1/C1/1178:1183 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_4UJC_111 | 1/C1/1245:1254 | No text annotation Not in a motif group | geometric HL_4V88_212 HL_73530.2 | |
| HL_4UJC_112 | 1/C1/1294:1305 | No text annotation Not in a motif group | ||
| HL_4UJC_113 | 1/C1/1353:1358 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_4UJC_114 | 1/C1/1366:1373 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_4UJC_115 | 1/C1/1420:1427 | No text annotation Not in a motif group | ||
| HL_4UJC_116 | 1/C1/1459:1467 | No text annotation Not in a motif group | geometric HL_3RG5_006 HL_49288.1 | |
| HL_4UJC_117 | 1/C1/1565:1570 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_4UJC_118 | 1/C1/1614:1625 | No text annotation Not in a motif group | ||
| HL_4UJC_119 | 1/C1/1658:1666 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_4UJC_120 | 1/C1/1763:1769 | GNRA Not in a motif group | geometric HL_3SUX_002 HL_42097.1 | |
| HL_4UJC_121 | 1/C1/1847:1852 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4UJC_012 | No text annotation | ||
| HL_4UJC_028 | No text annotation | ||
| HL_4UJC_029 | No text annotation | ||
| HL_4UJC_045 | No text annotation | ||
| HL_4UJC_083 | No text annotation | ||
| HL_4UJC_092 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4UJC_001 | 1/A2/2:11, 1/A3/145:155 | No text annotation Not in a motif group | ||
| IL_4UJC_002 | 1/A2/11:16, 1/A3/141:145 | Other IL Not in a motif group | geometric IL_4WF9_084 IL_05145.2 | |
| IL_4UJC_003 | 1/A2/16:19, 1/A3/138:141 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_168 IL_67743.1 | |
| IL_4UJC_004 | 1/A2/30:37, 1/A2/44:52 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4WF9_008 IL_35728.2 | |
| IL_4UJC_005 | 1/A2/81:88, 1/A2/96:102 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_4UJC_006 | 1/A2/177:179, 1/A2/249:250 | Minor groove platform Not in a motif group | geometric IL_7A0S_028 IL_42622.2 | |
| IL_4UJC_007 | 1/A2/180:189, 1/A2/246:248 | No text annotation Not in a motif group | geometric IL_7A0S_042 IL_51629.2 | |
| IL_4UJC_008 | 1/A2/339:341, 1/A3/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_4UJC_009 | 1/A2/378:382, 1/A2/390:405 | No text annotation Not in a motif group | ||
| IL_4UJC_010 | 1/A2/382:384, 1/A2/389:390 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_4UJC_011 | 1/A2/406:412, 1/A3/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.6 | |
| IL_4UJC_012 | 1/A2/433:437, 1/A2/1280:1285 | No text annotation Not in a motif group | ||
| IL_4UJC_013 | 1/A2/450:452, 1/A2/683:685 | No text annotation Not in a motif group | geometric IL_4YHW_001 IL_95997.1 | |
| IL_4UJC_014 | 1/A2/454:465, 1/A2/672:681 | No text annotation Not in a motif group | ||
| IL_4UJC_015 | 1/A2/471:479, 1/A2/664:666 | No text annotation Not in a motif group | geometric IL_4V8Q_188 IL_95997.1 | |
| IL_4UJC_016 | 1/A2/482:484, 1/A2/660:661 | No text annotation Not in a motif group | ||
| IL_4UJC_017 | 1/A2/487:490, 1/A2/654:657 | No text annotation Not in a motif group | ||
| IL_4UJC_018 | 1/A2/491:493, 1/A2/651:653 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_4UJC_019 | 1/A2/496:498, 1/A2/646:648 | No text annotation Not in a motif group | geometric IL_4YHW_001 IL_95997.1 | |
| IL_4UJC_020 | 1/A2/500:503, 1/A2/640:644 | No text annotation Not in a motif group | ||
| IL_4UJC_021 | 1/A2/710:712, 1/A2/926:930 | No text annotation Not in a motif group | ||
| IL_4UJC_022 | 1/A2/714:717, 1/A2/921:924 | No text annotation Not in a motif group | ||
| IL_4UJC_023 | 1/A2/718:725, 1/A2/911:920 | No text annotation Not in a motif group | ||
| IL_4UJC_024 | 1/A2/728:730, 1/A2/906:908 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_4UJC_025 | 1/A2/733:737, 1/A2/900:903 | No text annotation Not in a motif group | ||
| IL_4UJC_026 | 1/A2/738:741, 1/A2/894:899 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_30621.2 | |
| IL_4UJC_027 | 1/A2/955:956, 1/A2/1257:1259 | No text annotation Not in a motif group | ||
| IL_4UJC_028 | 1/A2/958:962, 1/A2/1252:1255 | No text annotation Not in a motif group | ||
| IL_4UJC_029 | 1/A2/1057:1062, 1/A2/1198:1203 | No text annotation Not in a motif group | ||
| IL_4UJC_030 | 1/A2/1063:1064, 1/A2/1193:1197 | No text annotation Not in a motif group | ||
| IL_4UJC_031 | 1/A2/1064:1067, 1/A2/1189:1193 | No text annotation Not in a motif group | ||
| IL_4UJC_032 | 1/A2/1077:1078, 1/A2/1177:1179 | No text annotation Not in a motif group | ||
| IL_4UJC_033 | 1/A2/1092:1095, 1/A2/1138:1141 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1L9A_005 IL_30621.2 | |
| IL_4UJC_034 | 1/A2/1153:1155, 1/A2/1166:1168 | No text annotation Not in a motif group | geometric IL_5TBW_127 IL_95997.1 | |
| IL_4UJC_035 | 1/A2/1223:1225, 1/A2/1245:1246 | No text annotation Not in a motif group | ||
| IL_4UJC_036 | 1/A2/1337:1341, 1/A2/1356:1362 | No text annotation Not in a motif group | ||
| IL_4UJC_037 | 1/A2/1405:1409, 1/A2/1435:1439 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_4UJC_038 | 1/A2/1411:1414, 1/A2/1430:1433 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.2 | |
| IL_4UJC_039 | 1/A2/1446:1447, 1/A2/1475:1477 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.2 | |
| IL_4UJC_040 | 1/A2/1453:1455, 1/A2/1468:1469 | No text annotation Not in a motif group | ||
| IL_4UJC_041 | 1/A2/1499:1501, 1/A2/1634:1636 | No text annotation Not in a motif group | geometric IL_5J7L_259 IL_95997.1 | |
| IL_4UJC_042 | 1/A2/1501:1505, 1/A2/1627:1634 | No text annotation Not in a motif group | homologous IL_8C3A_030 IL_17470.6 | |
| IL_4UJC_043 | 1/A2/1529:1534, 1/A2/1551:1557 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_4UJC_044 | 1/A2/1565:1568, 1/A2/1584:1586 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.2 | |
| IL_4UJC_045 | 1/A2/1569:1571, 1/A2/1582:1583 | Single bulged U Not in a motif group | homologous IL_5TBW_032 IL_83039.13 | |
| IL_4UJC_046 | 1/A2/1603:1605, 1/A2/1615:1619 | No text annotation Not in a motif group | homologous IL_8C3A_036 IL_90991.6 | |
| IL_4UJC_047 | 1/A2/1650:1652, 1/A2/1661:1663 | No text annotation Not in a motif group | homologous IL_5TBW_034 IL_95997.1 | |
| IL_4UJC_048 | 1/A2/1665:1667, 1/A2/1826:1829 | No text annotation Not in a motif group | ||
| IL_4UJC_050 | 1/A2/1702:1704, 1/A2/1816:1817 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_4UJC_051 | 1/A2/1710:1716, 1/A2/1771:1777 | No text annotation Not in a motif group | homologous IL_8C3A_041 IL_93830.3 | |
| IL_4UJC_052 | 1/A2/1716:1717, 1/A2/1769:1771 | Minor groove platform Not in a motif group | homologous IL_5TBW_039 IL_42622.2 | |
| IL_4UJC_053 | 1/A2/1718:1724, 1/A2/1764:1768 | No text annotation Not in a motif group | geometric IL_4V9F_035 IL_21121.1 | |
| IL_4UJC_054 | 1/A2/1725:1728, 1/A2/1760:1763 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_041 IL_30621.2 | |
| IL_4UJC_055 | 1/A2/1728:1731, 1/A2/1757:1760 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_168 IL_67743.1 | |
| IL_4UJC_056 | 1/A2/1732:1736, 1/A2/1754:1756 | No text annotation Not in a motif group | geometric IL_4V84_070 IL_23164.1 | |
| IL_4UJC_057 | 1/A2/1738:1742, 1/A2/1748:1752 | No text annotation Not in a motif group | ||
| IL_4UJC_058 | 1/A2/1793:1795, 1/A2/1802:1803 | Single bulged A Not in a motif group | homologous IL_5TBW_045 IL_37497.2 | |
| IL_4UJC_059 | 1/A2/1835:1838, 1/A2/1852:1855 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_001 IL_30621.2 | |
| IL_4UJC_060 | 1/A2/1883:1887, 1/A2/2045:2049 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_4UJC_061 | 1/A2/1889:1898, 1/A2/2041:2043 | No text annotation Not in a motif group | geometric IL_5Y85_006 IL_95997.1 | |
| IL_4UJC_062 | 1/A2/1898:1900, 1/A2/2040:2041 | No text annotation Not in a motif group | ||
| IL_4UJC_063 | 1/A2/1904:1911, 1/A2/2031:2036 | No text annotation Not in a motif group | homologous IL_5TBW_051 IL_27086.1 | |
| IL_4UJC_064 | 1/A2/1911:1922, 1/A2/2016:2031 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_4UJC_065 | 1/A2/1924:1926, 1/A2/2013:2014 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.13 | |
| IL_4UJC_066 | 1/A2/2060:2063, 1/A2/2247:2250 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1MFQ_004 IL_30621.2 | |
| IL_4UJC_067 | 1/A2/2266:2268, 1/A2/2319:2322 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_52767.2 | |
| IL_4UJC_068 | 1/A2/2274:2277, 1/A2/2311:2313 | No text annotation Not in a motif group | geometric IL_5UNE_004 IL_95997.1 | |
| IL_4UJC_069 | 1/A2/2277:2286, 1/A2/2304:2311 | No text annotation Not in a motif group | ||
| IL_4UJC_070 | 1/A2/2288:2290, 1/A2/2301:2302 | Single bulged A Not in a motif group | geometric IL_4R4V_004 IL_37497.2 | |
| IL_4UJC_071 | 1/A2/2335:2342, 1/A2/3826:3832 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge Not in a motif group | geometric IL_4V9F_012 IL_59724.1 | |
| IL_4UJC_072 | 1/A2/2383:2386, 1/A2/2760:2761 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V9F_050 IL_50694.2 | |
| IL_4UJC_073 | 1/A2/2392:2396, 1/A2/2404:2406 | C-loop Not in a motif group | geometric IL_7RQB_051 IL_63596.6 | |
| IL_4UJC_074 | 1/A2/2423:2427, 1/A2/2486:2491 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_4UJC_075 | 1/A2/2454:2456, 1/A2/2476:2477 | No text annotation Not in a motif group | ||
| IL_4UJC_076 | 1/A2/2519:2521, 1/A2/2749:2751 | Isolated cWH basepair Not in a motif group | geometric IL_3SJ2_003 IL_51629.2 | |
| IL_4UJC_077 | 1/A2/2523:2526, 1/A2/2745:2747 | No text annotation Not in a motif group | geometric IL_7A0S_107 IL_51629.2 | |
| IL_4UJC_078 | 1/A2/2566:2570, 1/A2/2729:2733 | Triple sheared Not in a motif group | homologous IL_5TBW_067 IL_56467.8 | |
| IL_4UJC_079 | 1/A2/2590:2591, 1/A2/2701:2703 | No text annotation Not in a motif group | ||
| IL_4UJC_080 | 1/A2/2591:2592, 1/A2/2699:2701 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_4UJC_081 | 1/A2/2622:2625, 1/A2/2662:2666 | No text annotation Not in a motif group | ||
| IL_4UJC_082 | 1/A2/2628:2630, 1/A2/2658:2659 | No text annotation Not in a motif group | ||
| IL_4UJC_083 | 1/A2/2633:2640, 1/A2/2648:2655 | No text annotation Not in a motif group | ||
| IL_4UJC_084 | 1/A2/2809:2815, 1/A2/3819:3822 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_49460.2 | |
| IL_4UJC_085 | 1/A2/2821:2823, 1/A2/3811:3813 | Isolated tWW turn Not in a motif group | homologous IL_5TBW_075 IL_54997.7 | |
| IL_4UJC_086 | 1/A2/2824:2827, 1/A2/3809:3810 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_50694.2 | |
| IL_4UJC_087 | 1/A2/2827:2832, 1/A2/3806:3809 | Intercalated tWH Not in a motif group | homologous IL_5TBW_077 IL_82842.2 | |
| IL_4UJC_088 | 1/A2/2844:2849, 1/A2/2854:2860 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
| IL_4UJC_089 | 1/A2/2866:2868, 1/A2/3579:3581 | No text annotation Not in a motif group | homologous IL_5TBW_079 IL_95997.1 | |
| IL_4UJC_090 | 1/A2/2873:2874, 1/A2/3571:3574 | No text annotation Not in a motif group | homologous IL_5TBW_080 IL_74125.1 | |
| IL_4UJC_091 | 1/A2/3601:3602, 1/A2/3796:3798 | Single bulged A Not in a motif group | homologous IL_5TBW_082 IL_37497.2 | |
| IL_4UJC_092 | 1/A2/3629:3634, 1/A2/3646:3653 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_4UJC_093 | 1/A2/3669:3672, 1/A2/3718:3719 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_88739.1 | |
| IL_4UJC_094 | 1/A2/3673:3674, 1/A2/3714:3717 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_4UJC_095 | 1/A2/3677:3679, 1/A2/3710:3711 | No text annotation Not in a motif group | ||
| IL_4UJC_096 | 1/A2/3679:3683, 1/A2/3708:3710 | No text annotation Not in a motif group | ||
| IL_4UJC_097 | 1/A2/3684:3690, 1/A2/3701:3707 | No text annotation Not in a motif group | homologous IL_5TBW_088 IL_36973.6 | |
| IL_4UJC_098 | 1/A2/3723:3724, 1/A2/3738:3740 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
| IL_4UJC_099 | 1/A2/3749:3750, 1/A2/3780:3783 | No text annotation Not in a motif group | homologous IL_8C3A_094 IL_59677.2 | |
| IL_4UJC_100 | 1/A2/3750:3761, 1/A2/3777:3780 | No text annotation Not in a motif group | homologous IL_5TBW_090 IL_81589.2 | |
| IL_4UJC_101 | 1/A2/3864:3867, 1/A2/4523:4525 | No text annotation Not in a motif group | homologous IL_8C3A_096 IL_63450.2 | |
| IL_4UJC_102 | 1/A2/3869:3871, 1/A2/4518:4521 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_54678.5 | |
| IL_4UJC_103 | 1/A2/3882:3885, 1/A2/4347:4349 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_51629.2 | |
| IL_4UJC_104 | 1/A2/3885:3886, 1/A2/4344:4347 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_4UJC_105 | 1/A2/3895:3898, 1/A2/4141:4145 | No text annotation Not in a motif group | ||
| IL_4UJC_106 | 1/A2/3917:3919, 1/A2/4030:4033 | No text annotation Not in a motif group | ||
| IL_4UJC_107 | 1/A2/3919:3921, 1/A2/4028:4030 | No text annotation Not in a motif group | geometric IL_4WF9_020 IL_95997.1 | |
| IL_4UJC_108 | 1/A2/3923:3935, 1/A2/4023:4026 | No text annotation Not in a motif group | ||
| IL_4UJC_109 | 1/A2/3939:3942, 1/A2/4006:4019 | No text annotation Not in a motif group | geometric IL_1MZP_003 IL_75283.2 | |
| IL_4UJC_110 | 1/A2/4050:4059, 1/A2/4118:4124 | No text annotation Not in a motif group | ||
| IL_4UJC_111 | 1/A2/4151:4152, 1/A2/4162:4164 | No text annotation Not in a motif group | homologous IL_8C3A_107 IL_69996.1 | |
| IL_4UJC_112 | 1/A2/4203:4205, 1/A2/4223:4227 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4V9F_076 IL_38958.7 | |
| IL_4UJC_113 | 1/A2/4255:4258, 1/A2/4272:4275 | No text annotation Not in a motif group | homologous IL_8C3A_109 IL_30621.2 | |
| IL_4UJC_114 | 1/A2/4307:4310, 1/A2/4324:4325 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_4UJC_115 | 1/A2/4360:4361, 1/A2/4402:4404 | Major groove platform Not in a motif group | homologous IL_5TBW_102 IL_27635.1 | |
| IL_4UJC_116 | 1/A2/4361:4363, 1/A2/4400:4402 | No text annotation Not in a motif group | geometric IL_5TBW_021 IL_95997.1 | |
| IL_4UJC_117 | 1/A2/4363:4365, 1/A2/4399:4400 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_4UJC_118 | 1/A2/4365:4367, 1/A2/4395:4399 | No text annotation Not in a motif group | homologous IL_8C3A_113 IL_92788.2 | |
| IL_4UJC_119 | 1/A2/4372:4376, 1/A2/4386:4390 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_4UJC_120 | 1/A2/4413:4414, 1/A2/4486:4488 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_76223.2 | |
| IL_4UJC_121 | 1/A2/4416:4418, 1/A2/4480:4484 | No text annotation Not in a motif group | homologous IL_8C3A_116 IL_90933.2 | |
| IL_4UJC_122 | 1/A2/4418:4419, 1/A2/4477:4480 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_71530.2 | |
| IL_4UJC_123 | 1/A2/4426:4428, 1/A2/4449:4451 | No text annotation Not in a motif group | homologous IL_8C3A_118 IL_51629.2 | |
| IL_4UJC_124 | 1/A2/4428:4430, 1/A2/4445:4449 | No text annotation Not in a motif group | ||
| IL_4UJC_125 | 1/A2/4455:4457, 1/A2/4463:4465 | Isolated cWH basepair Not in a motif group | geometric IL_4V88_453 IL_51629.2 | |
| IL_4UJC_126 | 1/A2/4497:4499, 1/A2/4506:4509 | No text annotation Not in a motif group | geometric IL_4V8Q_188 IL_95997.1 | |
| IL_4UJC_127 | 1/A2/4540:4545, 1/A2/4677:4682 | No text annotation Not in a motif group | ||
| IL_4UJC_128 | 1/A2/4556:4563, 1/A2/4568:4574 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_4UJC_129 | 1/A2/4583:4590, 1/A2/4628:4634 | No text annotation Not in a motif group | ||
| IL_4UJC_130 | 1/A2/4592:4597, 1/A2/4622:4626 | UAA/GAN related Not in a motif group | geometric IL_5TBW_118 IL_17136.1 | |
| IL_4UJC_131 | 1/A2/4597:4600, 1/A2/4619:4622 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_109 IL_30621.2 | |
| IL_4UJC_132 | 1/A2/4600:4602, 1/A2/4615:4619 | Isolated cWS basepair Not in a motif group | geometric IL_5TBW_047 IL_52767.2 | |
| IL_4UJC_133 | 1/A2/4640:4645, 1/A2/4665:4670 | UAA/GAN with extra cWW Not in a motif group | geometric IL_5J7L_350 IL_49767.5 | |
| IL_4UJC_134 | 1/A2/4698:4701, 1/A2/4913:4915 | No text annotation Not in a motif group | ||
| IL_4UJC_135 | 1/A2/4702:4705, 1/A2/4909:4912 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.2 | |
| IL_4UJC_136 | 1/A2/4728:4730, 1/A2/4818:4820 | No text annotation Not in a motif group | geometric IL_4V9F_105 IL_95997.1 | |
| IL_4UJC_137 | 1/A2/4733:4737, 1/A2/4810:4815 | No text annotation Not in a motif group | ||
| IL_4UJC_138 | 1/A2/4739:4744, 1/A2/4806:4808 | No text annotation Not in a motif group | ||
| IL_4UJC_139 | 1/A2/4745:4747, 1/A2/4802:4805 | No text annotation Not in a motif group | ||
| IL_4UJC_140 | 1/A2/4840:4844, 1/A2/4885:4889 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_4UJC_141 | 1/A2/4846:4851, 1/A2/4879:4883 | No text annotation Not in a motif group | ||
| IL_4UJC_142 | 1/A2/4854:4856, 1/A2/4875:4876 | No text annotation Not in a motif group | ||
| IL_4UJC_143 | 1/A2/4923:4924, 1/A2/5018:5020 | Single bulged G Not in a motif group | geometric IL_3SUX_001 IL_00225.2 | |
| IL_4UJC_144 | 1/A2/4927:4930, 1/A2/4938:4941 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.2 | |
| IL_4UJC_145 | 1/A2/4947:4949, 1/A2/5012:5014 | No text annotation Not in a motif group | geometric IL_3LA5_001 IL_95997.1 | |
| IL_4UJC_146 | 1/A2/4951:4952, 1/A2/5008:5010 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_4UJC_147 | 1/A2/4955:4958, 1/A2/4999:5005 | No text annotation Not in a motif group | ||
| IL_4UJC_148 | 1/A2/4958:4964, 1/A2/4994:4999 | No text annotation Not in a motif group | ||
| IL_4UJC_149 | 1/A2/4967:4969, 1/A2/4990:4991 | Single bulged U Not in a motif group | homologous IL_5TBW_134 IL_83039.13 | |
| IL_4UJC_150 | 1/A2/4969:4972, 1/A2/4987:4990 | tWS-tSW Not in a motif group | geometric IL_5TBW_135 IL_09705.9 | |
| IL_4UJC_151 | 1/A3/64:67, 1/A3/91:95 | No text annotation Not in a motif group | ||
| IL_4UJC_152 | 1/A3/68:69, 1/A3/88:90 | Single bulged U Not in a motif group | homologous IL_5TBW_146 IL_83039.13 | |
| IL_4UJC_153 | 1/A4/1:2, 1/A4/117:119 | Single stack bend Not in a motif group | geometric IL_2QWY_008 IL_92001.1 | |
| IL_4UJC_154 | 1/A4/15:16, 1/A4/62:64 | No text annotation Not in a motif group | ||
| IL_4UJC_155 | 1/A4/21:27, 1/A4/52:57 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_4UJC_156 | 1/A4/72:78, 1/A4/98:103 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_4WF9_100 IL_16458.1 | |
| IL_4UJC_157 | 1/A4/79:81, 1/A4/95:97 | Isolated cWH basepair Not in a motif group | geometric IL_4WZM_001 IL_95997.1 | |
| IL_4UJC_158 | 1/A4/82:85, 1/A4/92:94 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_4UJC_159 | 1/AC/47:49, 1/AC/114:115 | No text annotation Not in a motif group | ||
| IL_4UJC_160 | 1/AC/52:58, 1/AC/110:111 | No text annotation Not in a motif group | ||
| IL_4UJC_161 | 1/AC/60:62, 1/AC/105:108 | No text annotation Not in a motif group | ||
| IL_4UJC_162 | 1/AC/62:67, 1/AC/100:105 | No text annotation Not in a motif group | ||
| IL_4UJC_163 | 1/AC/67:69, 1/AC/98:100 | No text annotation Not in a motif group | ||
| IL_4UJC_164 | 1/AC/70:75, 1/AC/91:97 | No text annotation Not in a motif group | ||
| IL_4UJC_165 | 1/AC/135:137, 1/AC/287:289 | No text annotation Not in a motif group | ||
| IL_4UJC_166 | 1/AC/149:150, 1/AC/242:244 | No text annotation Not in a motif group | ||
| IL_4UJC_167 | 1/AC/255:261, 1/AC/272:277 | No text annotation Not in a motif group | ||
| IL_4UJC_168 | 1/C1/23:26, 1/C1/648:651 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5C5W_001 IL_30621.2 | |
| IL_4UJC_169 | 1/C1/34:36, 1/C1/519:521 | Stack and bulge Not in a motif group | geometric IL_2O3X_001 IL_82842.2 | |
| IL_4UJC_170 | 1/C1/36:40, 1/C1/514:519 | No text annotation Not in a motif group | homologous IL_4V88_386 IL_41507.1 | |
| IL_4UJC_171 | 1/C1/41:47, 1/C1/479:481 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_4UJC_172 | 1/C1/49:51, 1/C1/476:477 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_4UJC_173 | 1/C1/56:62, 1/C1/86:89 | No text annotation Not in a motif group | ||
| IL_4UJC_174 | 1/C1/108:112, 1/C1/349:353 | No text annotation Not in a motif group | ||
| IL_4UJC_175 | 1/C1/112:115, 1/C1/348:349 | Multiple bulged bases Not in a motif group | geometric IL_5XWP_001 IL_44546.1 | |
| IL_4UJC_176 | 1/C1/115:121, 1/C1/343:348 | No text annotation Not in a motif group | ||
| IL_4UJC_177 | 1/C1/146:151, 1/C1/167:174 | No text annotation Not in a motif group | ||
| IL_4UJC_178 | 1/C1/152:154, 1/C1/164:166 | No text annotation Not in a motif group | homologous IL_4V88_395 IL_53251.2 | |
| IL_4UJC_179 | 1/C1/186:192, 1/C1/207:213 | No text annotation Not in a motif group | ||
| IL_4UJC_180 | 1/C1/317:319, 1/C1/332:333 | No text annotation Not in a motif group | ||
| IL_4UJC_181 | 1/C1/359:364, 1/C1/396:403 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_4UJC_182 | 1/C1/366:371, 1/C1/393:394 | No text annotation Not in a motif group | geometric IL_4ERD_001 IL_59677.2 | |
| IL_4UJC_183 | 1/C1/411:413, 1/C1/424:429 | No text annotation Not in a motif group | ||
| IL_4UJC_184 | 1/C1/437:439, 1/C1/454:456 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_4UJC_185 | 1/C1/459:461, 1/C1/468:470 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_4UJC_186 | 1/C1/487:489, 1/C1/511:512 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_4UJC_187 | 1/C1/491:495, 1/C1/508:509 | C-loop Not in a motif group | geometric IL_4LFB_015 IL_75255.1 | |
| IL_4UJC_188 | 1/C1/495:496, 1/C1/506:508 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_4UJC_189 | 1/C1/530:531, 1/C1/553:555 | Single bulged A Not in a motif group | homologous IL_4V88_409 IL_37497.2 | |
| IL_4UJC_190 | 1/C1/535:539, 1/C1/544:549 | No text annotation Not in a motif group | ||
| IL_4UJC_191 | 1/C1/565:569, 1/C1/581:585 | No text annotation Not in a motif group | ||
| IL_4UJC_192 | 1/C1/599:608, 1/C1/635:637 | No text annotation Not in a motif group | geometric IL_4V88_470 IL_51629.2 | |
| IL_4UJC_193 | 1/C1/611:617, 1/C1/624:632 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_4UJC_194 | 1/C1/663:665, 1/C1/1162:1164 | Isolated cWH basepair Not in a motif group | geometric IL_406D_002 IL_51629.2 | |
| IL_4UJC_195 | 1/C1/673:675, 1/C1/1030:1032 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_4UJC_196 | 1/C1/676:680, 1/C1/1025:1029 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_4UJC_197 | 1/C1/692:694, 1/C1/738:739 | No text annotation Not in a motif group | ||
| IL_4UJC_198 | 1/C1/752:754, 1/C1/790:791 | No text annotation Not in a motif group | ||
| IL_4UJC_199 | 1/C1/802:803, 1/C1/860:863 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_4UJC_200 | 1/C1/804:807, 1/C1/856:859 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_7A0S_040 IL_30621.2 | |
| IL_4UJC_201 | 1/C1/807:815, 1/C1/849:856 | No text annotation Not in a motif group | homologous IL_4V88_425 IL_69091.1 | |
| IL_4UJC_202 | 1/C1/877:879, 1/C1/907:909 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_427 IL_51629.2 | |
| IL_4UJC_203 | 1/C1/922:923, 1/C1/1019:1022 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_428 IL_50694.2 | |
| IL_4UJC_204 | 1/C1/925:927, 1/C1/1014:1017 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_009 IL_82068.2 | |
| IL_4UJC_205 | 1/C1/928:931, 1/C1/1010:1013 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_430 IL_30621.2 | |
| IL_4UJC_206 | 1/C1/931:935, 1/C1/1007:1010 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.2 | |
| IL_4UJC_207 | 1/C1/942:945, 1/C1/981:984 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_4UJC_208 | 1/C1/950:956, 1/C1/967:976 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_4UJC_209 | 1/C1/1042:1047, 1/C1/1071:1073 | Other IL Not in a motif group | homologous IL_4V88_435 IL_22046.1 | |
| IL_4UJC_210 | 1/C1/1047:1051, 1/C1/1067:1071 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_436 IL_17136.1 | |
| IL_4UJC_211 | 1/C1/1091:1093, 1/C1/1152:1158 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_4UJC_212 | 1/C1/1098:1101, 1/C1/1131:1134 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.2 | |
| IL_4UJC_213 | 1/C1/1101:1103, 1/C1/1129:1131 | No text annotation Not in a motif group | geometric IL_5UNE_009 IL_53251.2 | |
| IL_4UJC_214 | 1/C1/1108:1110, 1/C1/1123:1124 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_4UJC_215 | 1/C1/1168:1175, 1/C1/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_4UJC_216 | 1/C1/1202:1205, 1/C1/1693:1697 | No text annotation Not in a motif group | ||
| IL_4UJC_217 | 1/C1/1206:1210, 1/C1/1689:1692 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.2 | |
| IL_4UJC_218 | 1/C1/1213:1217, 1/C1/1681:1686 | No text annotation Not in a motif group | ||
| IL_4UJC_219 | 1/C1/1230:1232, 1/C1/1526:1528 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_4UJC_220 | 1/C1/1235:1236, 1/C1/1521:1523 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_4UJC_221 | 1/C1/1269:1272, 1/C1/1510:1513 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4EYA_008 IL_30621.2 | |
| IL_4UJC_222 | 1/C1/1281:1290, 1/C1/1309:1316 | No text annotation Not in a motif group | ||
| IL_4UJC_223 | 1/C1/1291:1293, 1/C1/1306:1308 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_10023.1 | |
| IL_4UJC_224 | 1/C1/1325:1327, 1/C1/1502:1503 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_4UJC_225 | 1/C1/1328:1333, 1/C1/1498:1501 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_4UJC_226 | 1/C1/1333:1335, 1/C1/1492:1498 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_4UJC_227 | 1/C1/1337:1338, 1/C1/1488:1490 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_4UJC_228 | 1/C1/1347:1349, 1/C1/1380:1382 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_4UJC_229 | 1/C1/1395:1397, 1/C1/1448:1450 | No text annotation Not in a motif group | geometric IL_5UNE_001 IL_53251.2 | |
| IL_4UJC_230 | 1/C1/1397:1399, 1/C1/1447:1448 | No text annotation Not in a motif group | ||
| IL_4UJC_231 | 1/C1/1401:1406, 1/C1/1440:1445 | No text annotation Not in a motif group | ||
| IL_4UJC_232 | 1/C1/1408:1413, 1/C1/1433:1438 | No text annotation Not in a motif group | ||
| IL_4UJC_233 | 1/C1/1415:1419, 1/C1/1428:1431 | No text annotation Not in a motif group | ||
| IL_4UJC_234 | 1/C1/1537:1539, 1/C1/1594:1596 | No text annotation Not in a motif group | geometric IL_6OL3_002 IL_95997.1 | |
| IL_4UJC_235 | 1/C1/1550:1558, 1/C1/1577:1582 | No text annotation Not in a motif group | ||
| IL_4UJC_236 | 1/C1/1559:1562, 1/C1/1573:1576 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
| IL_4UJC_237 | 1/C1/1604:1610, 1/C1/1629:1635 | No text annotation Not in a motif group | homologous IL_8C3A_469 IL_10092.1 | |
| IL_4UJC_238 | 1/C1/1700:1702, 1/C1/1833:1836 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_4UJC_239 | 1/C1/1702:1705, 1/C1/1829:1833 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4UJC_240 | 1/C1/1706:1708, 1/C1/1826:1828 | UU cWW water inserted Not in a motif group | geometric IL_4E48_002 IL_95997.1 | |
| IL_4UJC_241 | 1/C1/1708:1711, 1/C1/1822:1826 | Non canonical cWW and near pair Not in a motif group | homologous IL_4V88_466 IL_42334.1 | |
| IL_4UJC_242 | 1/C1/1713:1716, 1/C1/1817:1820 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_168 IL_67743.1 | |
| IL_4UJC_243 | 1/C1/1717:1720, 1/C1/1813:1816 | Double sheared Not in a motif group | homologous IL_4V88_468 IL_09705.9 | |
| IL_4UJC_244 | 1/C1/1720:1722, 1/C1/1812:1813 | No text annotation Not in a motif group | ||
| IL_4UJC_245 | 1/C1/1729:1731, 1/C1/1803:1805 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_4UJC_246 | 1/C1/1733:1736, 1/C1/1798:1801 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_4UJC_247 | 1/C1/1739:1742, 1/C1/1792:1795 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_4UJC_248 | 1/C1/1742:1747, 1/C1/1787:1792 | No text annotation Not in a motif group | ||
| IL_4UJC_249 | 1/C1/1750:1752, 1/C1/1780:1784 | No text annotation Not in a motif group | homologous IL_4V88_475 IL_95997.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4UJC_049 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4UJC_001 | 1/A2/371:378, 1/A2/405:406, 1/A3/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_4UJC_002 | 1/A2/963:969, 1/A2/1215:1223, 1/A2/1246:1251 | No text annotation Not in a motif group | ||
| J3_4UJC_003 | 1/A2/970:977, 1/A2/1052:1057, 1/A2/1203:1214 | No text annotation Not in a motif group | ||
| J3_4UJC_004 | 1/A2/1080:1088, 1/A2/1145:1149, 1/A2/1172:1175 | No text annotation Not in a motif group | ||
| J3_4UJC_005 | 1/A2/1510:1516, 1/A2/1601:1603, 1/A2/1619:1622 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_4UJC_006 | 1/A2/1524:1527, 1/A2/1559:1563, 1/A2/1588:1593 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
| J3_4UJC_007 | 1/A2/2370:2376, 1/A2/2782:2784, 1/A2/2796:2799 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_4UJC_008 | 1/A2/2379:2382, 1/A2/2762:2768, 1/A2/2777:2779 | No text annotation Not in a motif group | homologous J3_8C3A_007 NA | |
| J3_4UJC_009 | 1/A2/2526:2533, 1/A2/2548:2552, 1/A2/2734:2745 | No text annotation Not in a motif group | ||
| J3_4UJC_010 | 1/A2/2552:2553, 1/A2/2562:2566, 1/A2/2733:2734 | No text annotation Not in a motif group | ||
| J3_4UJC_011 | 1/A2/3905:3908, 1/A2/4042:4047, 1/A2/4127:4134 | No text annotation Not in a motif group | homologous J3_5TBW_012 NA | |
| J3_4UJC_012 | 1/A2/4201:4203, 1/A2/4227:4229, 1/A2/4238:4243 | No text annotation Not in a motif group | homologous J3_8C3A_010 NA | |
| J3_4UJC_013 | 1/A2/4423:4426, 1/A2/4451:4453, 1/A2/4467:4473 | No text annotation Not in a motif group | homologous J3_5TBW_014 NA | |
| J3_4UJC_014 | 1/A2/4925:4927, 1/A2/4941:4947, 1/A2/5014:5017 | No text annotation Not in a motif group | ||
| J3_4UJC_015 | 1/A3/44:45, 1/A3/58:64, 1/A3/95:99 | No text annotation Not in a motif group | ||
| J3_4UJC_016 | 1/A4/8:15, 1/A4/64:67, 1/A4/108:111 | No text annotation Not in a motif group | ||
| J3_4UJC_017 | 1/AC/140:142, 1/AC/251:253, 1/AC/279:284 | No text annotation Not in a motif group | ||
| J3_4UJC_018 | 1/C1/40:41, 1/C1/481:487, 1/C1/512:514 | No text annotation Not in a motif group | ||
| J3_4UJC_019 | 1/C1/681:684, 1/C1/918:922, 1/C1/1022:1024 | No text annotation Not in a motif group | ||
| J3_4UJC_020 | 1/C1/816:819, 1/C1/829:831, 1/C1/843:848 | No text annotation Not in a motif group | ||
| J3_4UJC_021 | 1/C1/938:941, 1/C1/985:993, 1/C1/1000:1004 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_4UJC_022 | 1/C1/1094:1097, 1/C1/1135:1140, 1/C1/1147:1151 | No text annotation Not in a motif group | ||
| J3_4UJC_023 | 1/C1/1218:1221, 1/C1/1645:1651, 1/C1/1673:1680 | No text annotation Not in a motif group | homologous J3_8C3A_038 NA | |
| J3_4UJC_024 | 1/C1/1237:1245, 1/C1/1254:1266, 1/C1/1516:1520 | No text annotation Not in a motif group | ||
| J3_4UJC_025 | 1/C1/1272:1277, 1/C1/1320:1324, 1/C1/1504:1510 | No text annotation Not in a motif group | ||
| J3_4UJC_026 | 1/C1/1340:1345, 1/C1/1384:1389, 1/C1/1481:1486 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_4UJC_027 | 1/C1/1350:1351, 1/C1/1360:1365, 1/C1/1374:1379 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: