Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6BZ7_0011/QA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_6BZ7_0031/QA/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_42097.1
HL_6BZ7_0041/QA/186F:191ANo text annotation
Not in a motif group
homologous
HL_6CZR_075
HL_10278.1
HL_6BZ7_0051/QA/201:216No text annotation
Not in a motif group
homologous
HL_4LFB_005
HL_56691.2
HL_6BZ7_0061/QA/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_6BZ7_0071/QA/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_6BZ7_0081/QA/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_6BZ7_0091/QA/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_6BZ7_0101/QA/379:384GNRA
Not in a motif group
homologous
HL_6CZR_081
HL_42097.1
HL_6BZ7_0111/QA/419:424UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_6BZ7_0121/QA/458:474No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_6BZ7_0131/QA/522:527No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_6BZ7_0141/QA/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_6BZ7_0151/QA/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_6BZ7_0161/QA/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_6BZ7_0171/QA/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_6BZ7_0181/QA/838:848No text annotation
Not in a motif group
homologous
HL_6CZR_089
HL_53837.1
HL_6BZ7_0191/QA/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_42097.1
HL_6BZ7_0201/QA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_6BZ7_0211/QA/962:973No text annotation
Not in a motif group
HL_6BZ7_0221/QA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_6BZ7_0231/QA/1028B:1032ANo text annotation
Not in a motif group
HL_6BZ7_0241/QA/1076:1081GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_42097.1
HL_6BZ7_0251/QA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_6BZ7_0261/QA/1134:1140No text annotation
Not in a motif group
homologous
HL_6CZR_097
NA
HL_6BZ7_0271/QA/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_6BZ7_0281/QA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_6BZ7_0291/QA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_6BZ7_0301/QA/1356:1366No text annotation
Not in a motif group
HL_6BZ7_0311/QA/1449:1454No text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_89098.1
HL_6BZ7_0321/QA/1515:1520No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_6BZ7_0331/QV/13:23No text annotation
Not in a motif group
homologous
HL_4TUE_033
HL_25462.2
HL_6BZ7_0341/QV/32:40No text annotation
Not in a motif group
homologous
HL_6CFJ_107
NA
HL_6BZ7_0351/QV/54:62T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_1QU2_003
HL_71309.1
HL_6BZ7_0361/QW/13:23No text annotation
Not in a motif group
homologous
HL_5E81_205
NA
HL_6BZ7_0371/QW/31:41No text annotation
Not in a motif group
homologous
HL_5IB8_208
NA
HL_6BZ7_0381/QW/54:62T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5B63_004
HL_22280.1
HL_6BZ7_0391/RA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_6BZ7_0401/RA/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_6BZ7_0411/RA/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_6BZ7_0421/RA/137A:141ANo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.2
HL_6BZ7_0441/RA/194:201No text annotation
Not in a motif group
geometric
HL_4WF9_006
HL_06192.2
HL_6BZ7_0451/RA/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_6BZ7_0461/RA/246:252No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_6BZ7_0471/RA/270K:270NNo text annotation
Not in a motif group
HL_6BZ7_0481/RA/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_6BZ7_0491/RA/319:323No text annotation
Not in a motif group
homologous
HL_7RQB_011
HL_75407.1
HL_6BZ7_0501/RA/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_6BZ7_0511/RA/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_6BZ7_0521/RA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_6BZ7_0531/RA/462:467No text annotation
Not in a motif group
homologous
HL_7A0S_015
HL_42097.1
HL_6BZ7_0541/RA/487:493No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_42097.1
HL_6BZ7_0561/RA/566:575No text annotation
Not in a motif group
geometric
HL_7RQB_018
HL_89380.2
HL_6BZ7_0571/RA/611:617No text annotation
Not in a motif group
homologous
HL_7A0S_019
HL_32369.1
HL_6BZ7_0581/RA/629:634GNRA
Not in a motif group
homologous
HL_4WF9_020
HL_42097.1
HL_6BZ7_0591/RA/641:647GNRA with one bulged base
Not in a motif group
homologous
HL_4WF9_021
HL_42097.1
HL_6BZ7_0601/RA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_6BZ7_0611/RA/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_6BZ7_0621/RA/779:785Other HL
Not in a motif group
geometric
HL_2NUE_001
HL_07518.1
HL_6BZ7_0631/RA/826:831No text annotation
Not in a motif group
homologous
HL_5J7L_157
HL_64365.1
HL_6BZ7_0641/RA/882:894No text annotation
Not in a motif group
HL_6BZ7_0651/RA/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.1
HL_6BZ7_0661/RA/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_6BZ7_0671/RA/1064:1074No text annotation
Not in a motif group
homologous
HL_5J7L_161
HL_07145.1
HL_6BZ7_0681/RA/1092:1099No text annotation
Not in a motif group
homologous
HL_6PRV_002
HL_84085.2
HL_6BZ7_0701/RA/1223:1228No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.1
HL_6BZ7_0711/RA/1281:1289No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_6BZ7_0721/RA/1324:1330No text annotation
Not in a motif group
homologous
HL_7A0S_033
HL_46680.1
HL_6BZ7_0731/RA/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_6BZ7_0741/RA/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_6BZ7_0751/RA/1451:1459No text annotation
Not in a motif group
geometric
HL_7RQB_037
HL_32426.1
HL_6BZ7_0761/RA/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_6BZ7_0781/RA/1565:1568No text annotation
Not in a motif group
homologous
HL_7A0S_039
HL_38927.2
HL_6BZ7_0791/RA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_6BZ7_0801/RA/1630A:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_6BZ7_0811/RA/1691:1696No text annotation
Not in a motif group
homologous
HL_7A0S_042
HL_03562.2
HL_6BZ7_0821/RA/1727:1733No text annotation
Not in a motif group
homologous
HL_7RQB_043
HL_43656.2
HL_6BZ7_0831/RA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_6BZ7_0841/RA/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_6BZ7_0851/RA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_6BZ7_0861/RA/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.1
HL_6BZ7_0871/RA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_6BZ7_0881/RA/1949:1957No text annotation
Not in a motif group
homologous
HL_7A0S_048
HL_51824.1
HL_6BZ7_0891/RA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_6BZ7_0901/RA/2143:2148UNCG
Not in a motif group
homologous
HL_3U4M_001
HL_03562.2
HL_6BZ7_0911/RA/2209:2215No text annotation
Not in a motif group
HL_6BZ7_0921/RA/2248:2256No text annotation
Not in a motif group
homologous
HL_7A0S_052
HL_53171.2
HL_6BZ7_0931/RA/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_6BZ7_0941/RA/2303:2313No text annotation
Not in a motif group
homologous
HL_5J7L_188
HL_11805.3
HL_6BZ7_0951/RA/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_6BZ7_0961/RA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_6BZ7_0971/RA/2374:2379No text annotation
Not in a motif group
homologous
HL_7A0S_057
HL_42097.1
HL_6BZ7_0981/RA/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_6BZ7_0991/RA/2471:2479No text annotation
Not in a motif group
homologous
HL_7A0S_059
HL_06192.2
HL_6BZ7_1001/RA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_88526.2
HL_6BZ7_1011/RA/2551:2557No text annotation
Not in a motif group
homologous
HL_7A0S_061
HL_43656.2
HL_6BZ7_1021/RA/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_6BZ7_1031/RA/2658:2663GNRA
Not in a motif group
geometric
HL_5J7L_197
HL_42097.1
HL_6BZ7_1041/RA/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_6BZ7_1051/RA/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_6BZ7_1071/RA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_6BZ7_1081/RA/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.1
HL_6BZ7_1091/RB/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_6BZ7_1101/RB/86:90No text annotation
Not in a motif group
homologous
HL_7A0S_070
HL_42097.1
HL_6BZ7_1111/XA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_6BZ7_1131/XA/158:163GNRA
Not in a motif group
homologous
HL_6CZR_074
HL_53845.1
HL_6BZ7_1141/XA/186F:191ANo text annotation
Not in a motif group
homologous
HL_6CZR_075
HL_10278.1
HL_6BZ7_1151/XA/201:216No text annotation
Not in a motif group
homologous
HL_4LFB_005
HL_56691.2
HL_6BZ7_1161/XA/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_6BZ7_1171/XA/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_6BZ7_1181/XA/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_6BZ7_1191/XA/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_6BZ7_1201/XA/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.1
HL_6BZ7_1211/XA/419:424No text annotation
Not in a motif group
homologous
HL_6CZR_082
HL_03562.2
HL_6BZ7_1221/XA/458:474No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_6BZ7_1231/XA/522:527No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_6BZ7_1241/XA/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_6BZ7_1251/XA/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_6BZ7_1261/XA/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_6BZ7_1271/XA/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_6BZ7_1281/XA/838:848No text annotation
Not in a motif group
homologous
HL_6CZR_089
HL_53837.1
HL_6BZ7_1291/XA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_6BZ7_1301/XA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_6BZ7_1311/XA/962:973No text annotation
Not in a motif group
geometric
HL_4QEI_002
HL_34168.2
HL_6BZ7_1321/XA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_6BZ7_1331/XA/1028B:1032ANo text annotation
Not in a motif group
HL_6BZ7_1341/XA/1076:1081GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_42097.1
HL_6BZ7_1351/XA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_6BZ7_1361/XA/1134:1140No text annotation
Not in a motif group
homologous
HL_6CZR_097
NA
HL_6BZ7_1371/XA/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_6BZ7_1381/XA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_6BZ7_1391/XA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_6BZ7_1401/XA/1356:1366No text annotation
Not in a motif group
HL_6BZ7_1411/XA/1449:1454No text annotation
Not in a motif group
geometric
HL_5T16_002
HL_65572.2
HL_6BZ7_1421/XA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_6BZ7_1431/XV/13:23No text annotation
Not in a motif group
homologous
HL_4TUE_033
HL_25462.2
HL_6BZ7_1441/XV/32:40No text annotation
Not in a motif group
homologous
HL_6CFJ_107
NA
HL_6BZ7_1451/XV/54:62T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_1QU2_003
HL_71309.1
HL_6BZ7_1461/XW/13:23No text annotation
Not in a motif group
homologous
HL_5E81_205
NA
HL_6BZ7_1471/XW/32:40No text annotation
Not in a motif group
homologous
HL_6CFJ_107
NA
HL_6BZ7_1481/XW/54:62T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5B63_004
HL_22280.1
HL_6BZ7_1491/YA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_6BZ7_1501/YA/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_6BZ7_1511/YA/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_6BZ7_1521/YA/137A:141ANo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.2
HL_6BZ7_1541/YA/194:201No text annotation
Not in a motif group
homologous
HL_7RQB_006
HL_06192.2
HL_6BZ7_1551/YA/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_6BZ7_1561/YA/246:252No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_6BZ7_1571/YA/270K:270NNo text annotation
Not in a motif group
HL_6BZ7_1581/YA/305:312No text annotation
Not in a motif group
homologous
HL_7A0S_010
HL_89380.2
HL_6BZ7_1591/YA/319:323No text annotation
Not in a motif group
homologous
HL_7RQB_011
HL_75407.1
HL_6BZ7_1601/YA/327:335No text annotation
Not in a motif group
homologous
HL_7RQB_012
HL_08002.8
HL_6BZ7_1611/YA/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_6BZ7_1621/YA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_6BZ7_1631/YA/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_42097.1
HL_6BZ7_1641/YA/487:493No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_42097.1
HL_6BZ7_1661/YA/566:575No text annotation
Not in a motif group
homologous
HL_7RQB_018
HL_89380.2
HL_6BZ7_1671/YA/611:617No text annotation
Not in a motif group
homologous
HL_7A0S_019
HL_32369.1
HL_6BZ7_1681/YA/629:634No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_42097.1
HL_6BZ7_1691/YA/641:647GNRA with one bulged base
Not in a motif group
homologous
HL_4WF9_021
HL_42097.1
HL_6BZ7_1711/YA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_6BZ7_1721/YA/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_6BZ7_1731/YA/779:785No text annotation
Not in a motif group
homologous
HL_7A0S_023
HL_27930.1
HL_6BZ7_1741/YA/826:831No text annotation
Not in a motif group
homologous
HL_5J7L_157
HL_64365.1
HL_6BZ7_1751/YA/883:893No text annotation
Not in a motif group
HL_6BZ7_1761/YA/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.1
HL_6BZ7_1771/YA/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_6BZ7_1781/YA/1064:1074No text annotation
Not in a motif group
homologous
HL_5J7L_161
HL_07145.1
HL_6BZ7_1791/YA/1092:1099No text annotation
Not in a motif group
HL_6BZ7_1811/YA/1223:1228No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.1
HL_6BZ7_1821/YA/1281:1289No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_6BZ7_1831/YA/1324:1330No text annotation
Not in a motif group
homologous
HL_7A0S_033
HL_46680.1
HL_6BZ7_1841/YA/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_6BZ7_1851/YA/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_6BZ7_1861/YA/1451:1459No text annotation
Not in a motif group
geometric
HL_7RQB_037
HL_32426.1
HL_6BZ7_1871/YA/1492:1498No text annotation
Not in a motif group
homologous
HL_7RQB_038
HL_46680.1
HL_6BZ7_1891/YA/1565:1568No text annotation
Not in a motif group
homologous
HL_7A0S_039
HL_38927.2
HL_6BZ7_1901/YA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_6BZ7_1911/YA/1630A:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_6BZ7_1921/YA/1691:1696No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_03562.2
HL_6BZ7_1931/YA/1727:1733No text annotation
Not in a motif group
homologous
HL_7RQB_043
HL_43656.2
HL_6BZ7_1941/YA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_6BZ7_1951/YA/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_6BZ7_1961/YA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_6BZ7_1971/YA/1863:1879No text annotation
Not in a motif group
geometric
HL_2Y9H_005
HL_47100.1
HL_6BZ7_1981/YA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_6BZ7_1991/YA/1949:1957No text annotation
Not in a motif group
homologous
HL_5J7L_182
HL_51824.1
HL_6BZ7_2001/YA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_6BZ7_2011/YA/2143:2148UNCG
Not in a motif group
homologous
HL_3U4M_001
HL_03562.2
HL_6BZ7_2021/YA/2209:2215No text annotation
Not in a motif group
homologous
HL_7RQB_052
HL_98426.1
HL_6BZ7_2031/YA/2248:2256No text annotation
Not in a motif group
homologous
HL_7A0S_052
HL_53171.2
HL_6BZ7_2041/YA/2264:2276No text annotation
Not in a motif group
homologous
HL_4WF9_050
HL_19870.6
HL_6BZ7_2051/YA/2303:2313No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_6BZ7_2061/YA/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_6BZ7_2071/YA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_6BZ7_2081/YA/2374:2379No text annotation
Not in a motif group
homologous
HL_7A0S_057
HL_42097.1
HL_6BZ7_2091/YA/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_6BZ7_2101/YA/2471:2479No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_6BZ7_2111/YA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_88526.2
HL_6BZ7_2121/YA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_6BZ7_2131/YA/2594:2599GNRA
Not in a motif group
homologous
HL_4WF9_059
HL_42097.1
HL_6BZ7_2141/YA/2658:2663No text annotation
Not in a motif group
homologous
HL_7RQB_064
HL_42097.1
HL_6BZ7_2151/YA/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_6BZ7_2161/YA/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_6BZ7_2181/YA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_6BZ7_2191/YA/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.1
HL_6BZ7_2201/YB/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_6BZ7_2211/YB/86:90No text annotation
Not in a motif group
homologous
HL_7A0S_070
HL_42097.1

Problematic loops

#loop idProblemSequence
HL_6BZ7_002No text annotation
HL_6BZ7_043No text annotation
HL_6BZ7_055No text annotation
HL_6BZ7_069No text annotation
HL_6BZ7_077No text annotation
HL_6BZ7_106Other HL
HL_6BZ7_112No text annotation
HL_6BZ7_153No text annotation
HL_6BZ7_165No text annotation
HL_6BZ7_170No text annotation
HL_6BZ7_180No text annotation
HL_6BZ7_188No text annotation
HL_6BZ7_217No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6BZ7_0011/QA/30:33,
1/QA/551:553
No text annotation
Not in a motif group
geometric
IL_4LFB_010
IL_95997.1
IL_6BZ7_0021/QA/44:45,
1/QA/396:398
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.2
IL_6BZ7_0031/QA/47:52,
1/QA/359:361
No text annotation
Not in a motif group
geometric
IL_4LFB_003
IL_11178.1
IL_6BZ7_0041/QA/54:56,
1/QA/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_6BZ7_0051/QA/63:66,
1/QA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_6BZ7_0061/QA/67:69,
1/QA/99:102
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_95997.1
IL_6BZ7_0071/QA/129:131,
1/QA/231:232
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_6BZ7_0081/QA/132:136,
1/QA/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_6BZ7_0091/QA/148:153,
1/QA/168:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4LFB_009
IL_39753.1
IL_6BZ7_0101/QA/185:186B,
1/QA/191E:192
No text annotation
Not in a motif group
IL_6BZ7_0111/QA/242:247,
1/QA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_6BZ7_0121/QA/249:252,
1/QA/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_6BZ7_0131/QA/292:293,
1/QA/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_6BZ7_0141/QA/367:369,
1/QA/392:393
Single bulged U
Not in a motif group
geometric
IL_4LFB_014
IL_83039.13
IL_6BZ7_0151/QA/371:375,
1/QA/389:390
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_75255.1
IL_6BZ7_0161/QA/375:377,
1/QA/386:389
Single bulged G, near cWW
Not in a motif group
geometric
IL_6CZR_128
IL_52767.2
IL_6BZ7_0171/QA/409:416,
1/QA/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_6BZ7_0181/QA/446:450,
1/QA/483:488
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_4LFB_018
IL_88269.3
IL_6BZ7_0191/QA/450:455,
1/QA/477:483
No text annotation
Not in a motif group
homologous
IL_4LFB_019
IL_11882.1
IL_6BZ7_0201/QA/504:511,
1/QA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_6BZ7_0211/QA/515:521,
1/QA/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_6BZ7_0221/QA/569:575,
1/QA/880:881
No text annotation
Not in a motif group
homologous
IL_5J7L_026
IL_69996.1
IL_6BZ7_0231/QA/580:584,
1/QA/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_6BZ7_0241/QA/594:596,
1/QA/644:645
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.1
IL_6BZ7_0251/QA/597:598,
1/QA/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_6CZR_137
IL_09061.6
IL_6BZ7_0261/QA/605:612,
1/QA/628:633
No text annotation
Not in a motif group
homologous
IL_4LFB_026
IL_78349.1
IL_6BZ7_0271/QA/654:655,
1/QA/751:754
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4LFB_027
IL_50694.2
IL_6BZ7_0281/QA/657:658,
1/QA/747:749
Major groove platform
Not in a motif group
homologous
IL_6CZR_140
IL_27635.1
IL_6BZ7_0291/QA/662:666,
1/QA/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4LFB_029
IL_71110.1
IL_6BZ7_0301/QA/673:678,
1/QA/712:717
No text annotation
Not in a motif group
geometric
IL_4LFB_030
IL_04668.1
IL_6BZ7_0311/QA/683:688,
1/QA/699:707
No text annotation
Not in a motif group
homologous
IL_6CZR_143
IL_37722.1
IL_6BZ7_0321/QA/774:778,
1/QA/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_6BZ7_0331/QA/779:783,
1/QA/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_6CZR_145
IL_17136.1
IL_6BZ7_0341/QA/887:894,
1/QA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_6BZ7_0351/QA/922:923,
1/QA/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.2
IL_6BZ7_0361/QA/925:927,
1/QA/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.2
IL_6BZ7_0371/QA/933:935,
1/QA/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_4LFB_037
IL_47078.1
IL_6BZ7_0381/QA/953:954,
1/QA/1226:1228
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_42622.2
IL_6BZ7_0391/QA/1048:1050,
1/QA/1208:1209
Single bulged U
Not in a motif group
homologous
IL_4LFB_042
IL_83039.13
IL_6BZ7_0401/QA/1052:1056,
1/QA/1204:1206
No text annotation
Not in a motif group
homologous
IL_6CZR_154
IL_76319.2
IL_6BZ7_0411/QA/1057:1058,
1/QA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_6BZ7_0421/QA/1060:1061,
1/QA/1195:1197
Single bulged U
Not in a motif group
homologous
IL_6CZR_156
IL_83039.13
IL_6BZ7_0431/QA/1061:1063,
1/QA/1193:1195
No text annotation
Not in a motif group
geometric
IL_4LFB_047
IL_95997.1
IL_6BZ7_0441/QA/1123:1128,
1/QA/1143:1150
No text annotation
Not in a motif group
IL_6BZ7_0451/QA/1128:1132,
1/QA/1142:1143
No text annotation
Not in a motif group
IL_6BZ7_0461/QA/1247:1253,
1/QA/1284:1290
No text annotation
Not in a motif group
homologous
IL_4LFB_051
IL_09129.1
IL_6BZ7_0471/QA/1255:1258,
1/QA/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_6BZ7_0481/QA/1259:1260,
1/QA/1274:1276
Not an internal loop
Not in a motif group
homologous
IL_4LFB_053
IL_93353.1
IL_6BZ7_0491/QA/1260:1262,
1/QA/1273:1274
Minor groove platform
Not in a motif group
geometric
IL_4LFB_054
IL_93353.1
IL_6BZ7_0501/QA/1303:1309,
1/QA/1328:1334
No text annotation
Not in a motif group
IL_6BZ7_0511/QA/1399:1401,
1/QA/1501:1504
No text annotation
Not in a motif group
homologous
IL_4LFB_056
NA
IL_6BZ7_0521/QA/1401:1404,
1/QA/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_6BZ7_0531/QA/1405:1407,
1/QA/1494:1496
No text annotation
Not in a motif group
geometric
IL_5MWI_004
IL_95997.1
IL_6BZ7_0541/QA/1407:1409,
1/QA/1491:1494
Decoding loop related
Not in a motif group
geometric
IL_3C3Z_002
IL_64417.1
IL_6BZ7_0551/QA/1412:1414,
1/QA/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_6BZ7_0561/QA/1416:1419,
1/QA/1481:1484
Double sheared
Not in a motif group
homologous
IL_6CZR_169
IL_09705.9
IL_6BZ7_0571/QA/1431:1435,
1/QA/1466:1469
UAA/GAN variation
Not in a motif group
homologous
IL_4LFB_062
IL_07235.1
IL_6BZ7_0581/QA/1435:1437,
1/QA/1464:1466
No text annotation
Not in a motif group
geometric
IL_5TBW_046
IL_95997.1
IL_6BZ7_0591/QA/1440:1447,
1/QA/1459:1461
No text annotation
Not in a motif group
homologous
IL_4LFB_064
IL_92788.2
IL_6BZ7_0601/RA/24:30,
1/RA/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_7RQB_001
IL_66414.6
IL_6BZ7_0611/RA/36:37,
1/RA/442:444
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.2
IL_6BZ7_0621/RA/43:44,
1/RA/434:436
Minor groove platform
Not in a motif group
homologous
IL_7A0S_003
IL_42622.2
IL_6BZ7_0631/RA/81:85,
1/RA/97:105
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_6BZ7_0641/RA/183:184,
1/RA/212:214
Single stack bend
Not in a motif group
homologous
IL_7A0S_005
IL_76488.2
IL_6BZ7_0651/RA/188:194,
1/RA/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_006
IL_04346.7
IL_6BZ7_0661/RA/239:245,
1/RA/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_6BZ7_0671/RA/270J:270K,
1/RA/270N:270P
Single bulged U
Not in a motif group
homologous
IL_7RQB_008
IL_83039.13
IL_6BZ7_0681/RA/271:272,
1/RA/365:366
No text annotation
Not in a motif group
IL_6BZ7_0691/RA/273:273A,
1/RA/363E:364
Major groove platform
Not in a motif group
homologous
IL_7RQB_009
IL_27635.1
IL_6BZ7_0701/RA/273F:279,
1/RA/361:363
No text annotation
Not in a motif group
IL_6BZ7_0711/RA/280:284,
1/RA/357:360
tSH-tHW
Not in a motif group
homologous
IL_7RQB_011
IL_04059.1
IL_6BZ7_0721/RA/288:290,
1/RA/350:353
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_012
IL_38958.7