4V5A Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V5A_001 | 1/AA/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_4V5A_003 | 1/AA/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_4V5A_004 | 1/AA/189C:189H | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_4V5A_005 | 1/AA/201:216 | No text annotation Not in a motif group | ||
| HL_4V5A_006 | 1/AA/259:267 | No text annotation Not in a motif group | homologous HL_6CZR_077 HL_69023.2 | |
| HL_4V5A_007 | 1/AA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_4V5A_008 | 1/AA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4V5A_010 | 1/AA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_4V5A_011 | 1/AA/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_4V5A_012 | 1/AA/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_4V5A_013 | 1/AA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_4V5A_014 | 1/AA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_4V5A_015 | 1/AA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_4V5A_016 | 1/AA/725:732 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_4V5A_017 | 1/AA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_4V5A_018 | 1/AA/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_53837.1 | |
| HL_4V5A_019 | 1/AA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_4V5A_020 | 1/AA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_4V5A_021 | 1/AA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4V5A_022 | 1/AA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_4V5A_023 | 1/AA/1076:1081 | GNRA Not in a motif group | homologous HL_6CZR_095 HL_42097.1 | |
| HL_4V5A_024 | 1/AA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4V5A_025 | 1/AA/1124:1149 | No text annotation Not in a motif group | ||
| HL_4V5A_026 | 1/AA/1165:1171 | No text annotation Not in a motif group | ||
| HL_4V5A_027 | 1/AA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_4V5A_028 | 1/AA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_4V5A_029 | 1/AA/1355:1367 | No text annotation Not in a motif group | ||
| HL_4V5A_030 | 1/AA/1445:1457 | UNCG Not in a motif group | geometric HL_5J7L_030 HL_03562.2 | |
| HL_4V5A_031 | 1/AA/1514:1521 | No text annotation Not in a motif group | ||
| HL_4V5A_032 | 1/AV/30:38 | tRNA anticodon loop Not in a motif group | geometric HL_4V50_137 HL_53597.2 | |
| HL_4V5A_034 | 1/AW/31:41 | No text annotation Not in a motif group | homologous HL_5IB8_208 NA | |
| HL_4V5A_035 | 1/AW/54:62 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_3WQY_003 HL_22280.1 | |
| HL_4V5A_036 | 1/BA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_4V5A_037 | 1/BA/86:96 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_4V5A_038 | 1/BA/123:128 | No text annotation Not in a motif group | homologous HL_7A0S_003 HL_75407.1 | |
| HL_4V5A_039 | 1/BA/139:142A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_4V5A_040 | 1/BA/154:172 | No text annotation Not in a motif group | homologous HL_7RQB_005 NA | |
| HL_4V5A_041 | 1/BA/194:201 | No text annotation Not in a motif group | geometric HL_7RQB_006 HL_06192.2 | |
| HL_4V5A_042 | 1/BA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_4V5A_043 | 1/BA/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_4V5A_044 | 1/BA/271H:271P | No text annotation Not in a motif group | ||
| HL_4V5A_045 | 1/BA/305:312 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_4V5A_046 | 1/BA/319:323 | No text annotation Not in a motif group | homologous HL_7A0S_011 HL_75407.1 | |
| HL_4V5A_047 | 1/BA/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_4V5A_048 | 1/BA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_4V5A_049 | 1/BA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_4V5A_050 | 1/BA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_4V5A_051 | 1/BA/486:494 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_4V5A_052 | 1/BA/542:551 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_4V5A_053 | 1/BA/564:577 | No text annotation Not in a motif group | ||
| HL_4V5A_054 | 1/BA/612:615 | No text annotation Not in a motif group | homologous HL_7A0S_019 HL_32369.1 | |
| HL_4V5A_055 | 1/BA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_4V5A_056 | 1/BA/640:648 | No text annotation Not in a motif group | geometric HL_4V9F_032 HL_49288.1 | |
| HL_4V5A_057 | 1/BA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_4V5A_058 | 1/BA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_4V5A_059 | 1/BA/779:785 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
| HL_4V5A_060 | 1/BA/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_4V5A_062 | 1/BA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_4V5A_063 | 1/BA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_4V5A_064 | 1/BA/1040:1115 | No text annotation Not in a motif group | ||
| HL_4V5A_065 | 1/BA/1168:1181 | No text annotation Not in a motif group | ||
| HL_4V5A_066 | 1/BA/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_4V5A_067 | 1/BA/1280:1290 | No text annotation Not in a motif group | geometric HL_1P6V_002 HL_22031.1 | |
| HL_4V5A_068 | 1/BA/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_4V5A_069 | 1/BA/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_4V5A_070 | 1/BA/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_4V5A_071 | 1/BA/1450A:1461 | No text annotation Not in a motif group | ||
| HL_4V5A_072 | 1/BA/1492:1498 | No text annotation Not in a motif group | ||
| HL_4V5A_073 | 1/BA/1526:1546 | No text annotation Not in a motif group | ||
| HL_4V5A_074 | 1/BA/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_4V5A_075 | 1/BA/1612:1619 | No text annotation Not in a motif group | homologous HL_7A0S_040 HL_64430.2 | |
| HL_4V5A_076 | 1/BA/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_4V5A_077 | 1/BA/1691:1696 | UNCG Not in a motif group | geometric HL_4LFB_011 HL_03562.2 | |
| HL_4V5A_078 | 1/BA/1717:1745 | No text annotation Not in a motif group | ||
| HL_4V5A_079 | 1/BA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_4V5A_080 | 1/BA/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_4V5A_081 | 1/BA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_4V5A_082 | 1/BA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_4V5A_083 | 1/BA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_4V5A_084 | 1/BA/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_4V5A_085 | 1/BA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_4V5A_087 | 1/BA/2205:2219 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
| HL_4V5A_088 | 1/BA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4V5A_089 | 1/BA/2264:2276 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_4V5A_090 | 1/BA/2303:2313 | No text annotation Not in a motif group | ||
| HL_4V5A_091 | 1/BA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_4V5A_092 | 1/BA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_4V5A_093 | 1/BA/2374:2379 | No text annotation Not in a motif group | homologous HL_7A0S_057 HL_42097.1 | |
| HL_4V5A_094 | 1/BA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_4V5A_095 | 1/BA/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_06192.2 | |
| HL_4V5A_096 | 1/BA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_4V5A_097 | 1/BA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_4V5A_098 | 1/BA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_4V5A_099 | 1/BA/2652:2668 | No text annotation Not in a motif group | ||
| HL_4V5A_100 | 1/BA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_4V5A_101 | 1/BA/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_4V5A_103 | 1/BA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_4V5A_104 | 1/BA/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_42097.1 | |
| HL_4V5A_105 | 1/BB/38:44 | No text annotation Not in a motif group | homologous HL_7RQB_070 HL_87939.1 | |
| HL_4V5A_107 | 1/CA/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_4V5A_109 | 1/CA/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_4V5A_110 | 1/CA/189C:189H | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_4V5A_111 | 1/CA/201:216 | No text annotation Not in a motif group | ||
| HL_4V5A_112 | 1/CA/259:267 | No text annotation Not in a motif group | homologous HL_6CZR_077 HL_69023.2 | |
| HL_4V5A_113 | 1/CA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_4V5A_114 | 1/CA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4V5A_115 | 1/CA/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_4V5A_116 | 1/CA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_4V5A_117 | 1/CA/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_4V5A_118 | 1/CA/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_4V5A_119 | 1/CA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_4V5A_120 | 1/CA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_4V5A_121 | 1/CA/689:698 | No text annotation Not in a motif group | homologous HL_6CZR_086 HL_12326.1 | |
| HL_4V5A_122 | 1/CA/725:732 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_4V5A_123 | 1/CA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_4V5A_124 | 1/CA/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_53837.1 | |
| HL_4V5A_125 | 1/CA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_4V5A_126 | 1/CA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_4V5A_127 | 1/CA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4V5A_128 | 1/CA/1012:1017 | GNRA Not in a motif group | geometric HL_4LFB_022 HL_42097.1 | |
| HL_4V5A_129 | 1/CA/1076:1081 | GNRA Not in a motif group | homologous HL_6CZR_095 HL_42097.1 | |
| HL_4V5A_130 | 1/CA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4V5A_131 | 1/CA/1124:1149 | No text annotation Not in a motif group | ||
| HL_4V5A_132 | 1/CA/1165:1171 | No text annotation Not in a motif group | ||
| HL_4V5A_133 | 1/CA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_4V5A_134 | 1/CA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_4V5A_135 | 1/CA/1355:1367 | No text annotation Not in a motif group | ||
| HL_4V5A_136 | 1/CA/1445:1457 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_4V5A_137 | 1/CA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4V5A_138 | 1/CV/30:38 | tRNA anticodon loop Not in a motif group | geometric HL_4WT8_216 HL_53597.2 | |
| HL_4V5A_141 | 1/CW/54:62 | No text annotation Not in a motif group | homologous HL_1FIR_003 NA | |
| HL_4V5A_142 | 1/DA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_4V5A_143 | 1/DA/86:96 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_4V5A_144 | 1/DA/123:128 | No text annotation Not in a motif group | homologous HL_7A0S_003 HL_75407.1 | |
| HL_4V5A_145 | 1/DA/139:142A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_4V5A_146 | 1/DA/154:172 | No text annotation Not in a motif group | homologous HL_7RQB_005 NA | |
| HL_4V5A_147 | 1/DA/194:201 | No text annotation Not in a motif group | geometric HL_7RQB_006 HL_06192.2 | |
| HL_4V5A_148 | 1/DA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_4V5A_149 | 1/DA/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_4V5A_151 | 1/DA/305:312 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_4V5A_152 | 1/DA/319:323 | No text annotation Not in a motif group | homologous HL_7A0S_011 HL_75407.1 | |
| HL_4V5A_153 | 1/DA/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_4V5A_154 | 1/DA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_4V5A_155 | 1/DA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_4V5A_156 | 1/DA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_4V5A_157 | 1/DA/486:494 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_4V5A_158 | 1/DA/542:551 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_4V5A_159 | 1/DA/564:577 | No text annotation Not in a motif group | ||
| HL_4V5A_160 | 1/DA/612:615 | No text annotation Not in a motif group | homologous HL_7A0S_019 HL_32369.1 | |
| HL_4V5A_161 | 1/DA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_4V5A_162 | 1/DA/640:648 | No text annotation Not in a motif group | geometric HL_4V9F_032 HL_49288.1 | |
| HL_4V5A_163 | 1/DA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_4V5A_164 | 1/DA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_4V5A_165 | 1/DA/779:785 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
| HL_4V5A_166 | 1/DA/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_4V5A_168 | 1/DA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_4V5A_169 | 1/DA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_4V5A_170 | 1/DA/1040:1115 | No text annotation Not in a motif group | ||
| HL_4V5A_171 | 1/DA/1168:1181 | No text annotation Not in a motif group | ||
| HL_4V5A_172 | 1/DA/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_4V5A_173 | 1/DA/1280:1290 | No text annotation Not in a motif group | geometric HL_1P6V_002 HL_22031.1 | |
| HL_4V5A_174 | 1/DA/1324:1330 | No text annotation Not in a motif group | geometric HL_7A0S_033 HL_46680.1 | |
| HL_4V5A_175 | 1/DA/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_4V5A_176 | 1/DA/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_4V5A_177 | 1/DA/1450A:1461 | No text annotation Not in a motif group | ||
| HL_4V5A_178 | 1/DA/1492:1498 | No text annotation Not in a motif group | ||
| HL_4V5A_179 | 1/DA/1526:1546 | No text annotation Not in a motif group | ||
| HL_4V5A_180 | 1/DA/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_4V5A_181 | 1/DA/1612:1619 | No text annotation Not in a motif group | homologous HL_7A0S_040 HL_64430.2 | |
| HL_4V5A_182 | 1/DA/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_4V5A_183 | 1/DA/1691:1696 | UNCG Not in a motif group | homologous HL_5J7L_175 HL_03562.2 | |
| HL_4V5A_184 | 1/DA/1717:1745 | No text annotation Not in a motif group | ||
| HL_4V5A_185 | 1/DA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_4V5A_186 | 1/DA/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_4V5A_187 | 1/DA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_4V5A_189 | 1/DA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_4V5A_190 | 1/DA/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_4V5A_191 | 1/DA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_4V5A_193 | 1/DA/2205:2219 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
| HL_4V5A_194 | 1/DA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4V5A_195 | 1/DA/2264:2276 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_4V5A_196 | 1/DA/2303:2313 | No text annotation Not in a motif group | ||
| HL_4V5A_197 | 1/DA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_4V5A_198 | 1/DA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_4V5A_199 | 1/DA/2374:2379 | No text annotation Not in a motif group | homologous HL_7A0S_057 HL_42097.1 | |
| HL_4V5A_200 | 1/DA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_4V5A_201 | 1/DA/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_06192.2 | |
| HL_4V5A_202 | 1/DA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_4V5A_203 | 1/DA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_4V5A_204 | 1/DA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_4V5A_205 | 1/DA/2652:2668 | No text annotation Not in a motif group | ||
| HL_4V5A_206 | 1/DA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_4V5A_207 | 1/DA/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_4V5A_208 | 1/DA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_4V5A_209 | 1/DA/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_42097.1 | |
| HL_4V5A_210 | 1/DB/38:44 | No text annotation Not in a motif group | homologous HL_7RQB_070 HL_87939.1 | |
| HL_4V5A_211 | 1/DB/86:91 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V5A_002 | No text annotation | ||
| HL_4V5A_009 | No text annotation | ||
| HL_4V5A_033 | No text annotation | ||
| HL_4V5A_061 | No text annotation | ||
| HL_4V5A_086 | No text annotation | ||
| HL_4V5A_102 | No text annotation | ||
| HL_4V5A_106 | No text annotation | ||
| HL_4V5A_108 | No text annotation | ||
| HL_4V5A_139 | No text annotation | ||
| HL_4V5A_140 | No text annotation | ||
| HL_4V5A_150 | No text annotation | ||
| HL_4V5A_167 | No text annotation | ||
| HL_4V5A_188 | No text annotation | ||
| HL_4V5A_192 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V5A_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_4V5A_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_4V5A_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_4V5A_004 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_76389.1 | |
| IL_4V5A_005 | 1/AA/67:69, 1/AA/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_4V5A_006 | 1/AA/129:131, 1/AA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_4V5A_007 | 1/AA/132:136, 1/AA/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_4V5A_008 | 1/AA/148:153, 1/AA/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_4V5A_009 | 1/AA/186:188, 1/AA/189L:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_4V5A_010 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_4V5A_011 | 1/AA/249:253, 1/AA/273:275 | No text annotation Not in a motif group | homologous IL_6CZR_124 IL_38684.1 | |
| IL_4V5A_012 | 1/AA/292:293, 1/AA/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_4V5A_013 | 1/AA/367:369, 1/AA/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.13 | |
| IL_4V5A_014 | 1/AA/371:375, 1/AA/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_4V5A_015 | 1/AA/375:376, 1/AA/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.2 | |
| IL_4V5A_016 | 1/AA/409:416, 1/AA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_4V5A_017 | 1/AA/445:450, 1/AA/483:489 | No text annotation Not in a motif group | ||
| IL_4V5A_018 | 1/AA/450:456, 1/AA/475:483 | No text annotation Not in a motif group | homologous IL_6CZR_131 IL_30149.1 | |
| IL_4V5A_019 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_4V5A_020 | 1/AA/515:521, 1/AA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4V5A_021 | 1/AA/569:575, 1/AA/880:881 | No text annotation Not in a motif group | ||
| IL_4V5A_022 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_4V5A_023 | 1/AA/594:596, 1/AA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_4V5A_024 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_4V5A_025 | 1/AA/605:612, 1/AA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_4V5A_026 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_4V5A_027 | 1/AA/656:658, 1/AA/747:750 | No text annotation Not in a motif group | ||
| IL_4V5A_028 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_4V5A_029 | 1/AA/673:678, 1/AA/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_4V5A_030 | 1/AA/683:688, 1/AA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4V5A_031 | 1/AA/773:778, 1/AA/804:806 | No text annotation Not in a motif group | ||
| IL_4V5A_032 | 1/AA/779:784, 1/AA/798:803 | tSH-tHW-tHS-cWW Not in a motif group | geometric IL_3LQX_002 IL_76308.4 | |
| IL_4V5A_033 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4V5A_034 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_4V5A_035 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_4V5A_036 | 1/AA/933:936, 1/AA/1379:1384 | No text annotation Not in a motif group | homologous IL_6CZR_149 IL_93211.1 | |
| IL_4V5A_037 | 1/AA/952:954, 1/AA/1226:1229 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4WF9_003 IL_65006.1 | |
| IL_4V5A_041 | 1/AA/1011:1012, 1/AA/1017:1019 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_4V5A_042 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.13 | |
| IL_4V5A_043 | 1/AA/1051:1056, 1/AA/1204:1207 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_4V5A_044 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_4V5A_045 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged U Not in a motif group | homologous IL_6CZR_156 IL_83039.13 | |
| IL_4V5A_046 | 1/AA/1061:1063, 1/AA/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_4V5A_047 | 1/AA/1158:1162, 1/AA/1174:1181 | No text annotation Not in a motif group | ||
| IL_4V5A_048 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_4V5A_049 | 1/AA/1254:1259, 1/AA/1276:1283 | No text annotation Not in a motif group | ||
| IL_4V5A_050 | 1/AA/1259:1262, 1/AA/1273:1276 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.9 | |
| IL_4V5A_051 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_4V5A_052 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
| IL_4V5A_053 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4V5A_054 | 1/AA/1405:1407, 1/AA/1494:1496 | No text annotation Not in a motif group | geometric IL_5VCI_002 IL_95997.1 | |
| IL_4V5A_055 | 1/AA/1407:1409, 1/AA/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_4V5A_056 | 1/AA/1412:1414, 1/AA/1486:1488 | No text annotation Not in a motif group | homologous IL_4LFB_059 IL_95997.1 | |
| IL_4V5A_057 | 1/AA/1416:1421, 1/AA/1479:1484 | No text annotation Not in a motif group | ||
| IL_4V5A_058 | 1/AA/1431:1435, 1/AA/1466:1469 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.1 | |
| IL_4V5A_059 | 1/AA/1435:1437, 1/AA/1464:1466 | No text annotation Not in a motif group | geometric IL_4M6D_011 IL_95997.1 | |
| IL_4V5A_060 | 1/AA/1440:1445, 1/AA/1457:1461 | No text annotation Not in a motif group | ||
| IL_4V5A_061 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7RQB_001 IL_66414.6 | |
| IL_4V5A_062 | 1/BA/36:37, 1/BA/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_4V5A_063 | 1/BA/42:43, 1/BA/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
| IL_4V5A_064 | 1/BA/81:85, 1/BA/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_4V5A_065 | 1/BA/183:184, 1/BA/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_4V5A_066 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_4V5A_067 | 1/BA/238:245, 1/BA/253:259 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7A0S_007 IL_04346.7 | |
| IL_4V5A_068 | 1/BA/272D:272G, 1/BA/363C:364 | No text annotation Not in a motif group | ||
| IL_4V5A_069 | 1/BA/272I:280, 1/BA/360:363A | No text annotation Not in a motif group | ||
| IL_4V5A_070 | 1/BA/280:290, 1/BA/350:360 | No text annotation Not in a motif group | ||
| IL_4V5A_071 | 1/BA/293:295, 1/BA/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_4V5A_072 | 1/BA/481:484, 1/BA/496:509 | No text annotation Not in a motif group | geometric IL_7RQB_014 IL_60992.6 | |
| IL_4V5A_073 | 1/BA/606:610, 1/BA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
| IL_4V5A_074 | 1/BA/672:674, 1/BA/806:808 | No text annotation Not in a motif group | homologous IL_7A0S_014 IL_95997.1 | |
| IL_4V5A_075 | 1/BA/674:679, 1/BA/798:806 | No text annotation Not in a motif group | ||
| IL_4V5A_076 | 1/BA/697:698, 1/BA/763:765 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_37497.2 | |
| IL_4V5A_077 | 1/BA/702:703, 1/BA/728:730 | Single bulged G Not in a motif group | geometric IL_4WF9_023 IL_00225.2 | |
| IL_4V5A_078 | 1/BA/703:707, 1/BA/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_4V5A_079 | 1/BA/738:741, 1/BA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_4V5A_080 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases Not in a motif group | geometric IL_4WF9_027 IL_90991.6 | |
| IL_4V5A_081 | 1/BA/837:838, 1/BA/940:942 | Single stack bend Not in a motif group | homologous IL_4WF9_028 IL_92001.1 | |
| IL_4V5A_082 | 1/BA/844:846, 1/BA/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
| IL_4V5A_083 | 1/BA/846:850, 1/BA/927:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 IL_94165.1 | |
| IL_4V5A_084 | 1/BA/858:862, 1/BA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7RQB_027 IL_38862.1 | |
| IL_4V5A_085 | 1/BA/862:863, 1/BA/913:915 | Minor groove platform Not in a motif group | homologous IL_4WF9_032 IL_42622.2 | |
| IL_4V5A_086 | 1/BA/864:868, 1/BA/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_4V5A_087 | 1/BA/870:872, 1/BA/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 IL_52767.2 | |
| IL_4V5A_088 | 1/BA/875:877, 1/BA/899:902 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
| IL_4V5A_089 | 1/BA/877:883, 1/BA/895:899 | No text annotation Not in a motif group | ||
| IL_4V5A_090 | 1/BA/952:954, 1/BA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_4V5A_091 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_4V5A_092 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
| IL_4V5A_093 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.7 | |
| IL_4V5A_094 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_4V5A_095 | 1/BA/1018:1024, 1/BA/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_4V5A_096 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_4V5A_097 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_4V5A_098 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7A0S_041 IL_52767.2 | |
| IL_4V5A_099 | 1/BA/1202:1207, 1/BA/1239:1243 | tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_056 IL_62654.1 | |
| IL_4V5A_100 | 1/BA/1208:1216, 1/BA/1233:1238 | No text annotation Not in a motif group | ||
| IL_4V5A_101 | 1/BA/1219:1221, 1/BA/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_4V5A_102 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_4V5A_103 | 1/BA/1319:1324, 1/BA/1330:1333 | No text annotation Not in a motif group | ||
| IL_4V5A_104 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_4V5A_105 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_4V5A_106 | 1/BA/1414:1416, 1/BA/1582:1588 | No text annotation Not in a motif group | ||
| IL_4V5A_107 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_4V5A_108 | 1/BA/1433:1435, 1/BA/1557:1560 | No text annotation Not in a motif group | homologous IL_7A0S_052 IL_55351.2 | |
| IL_4V5A_109 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_4V5A_111 | 1/BA/1469:1473, 1/BA/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_4V5A_112 | 1/BA/1481:1484, 1/BA/1506:1510 | No text annotation Not in a motif group | ||
| IL_4V5A_113 | 1/BA/1484:1486, 1/BA/1503:1506 | No text annotation Not in a motif group | ||
| IL_4V5A_114 | 1/BA/1489:1491, 1/BA/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_4V5A_115 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_4V5A_116 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_4V5A_117 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_064 IL_50694.2 | |
| IL_4V5A_118 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7A0S_062 IL_82842.2 | |
| IL_4V5A_119 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_4V5A_120 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_4V5A_121 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_4V5A_122 | 1/BA/1837:1840, 1/BA/1902:1903 | No text annotation Not in a motif group | ||
| IL_4V5A_123 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_4V5A_124 | 1/BA/1846:1849, 1/BA/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_4V5A_125 | 1/BA/1851:1855, 1/BA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_4V5A_126 | 1/BA/1856:1860, 1/BA/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_4V5A_127 | 1/BA/1933:1934, 1/BA/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_318 IL_59677.2 | |
| IL_4V5A_128 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_4V5A_129 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_4V5A_130 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_4V5A_131 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_4WF9_081 IL_42622.2 | |
| IL_4V5A_132 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_4V5A_133 | 1/BA/2085:2087, 1/BA/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_4V5A_135 | 1/BA/2110:2120, 1/BA/2178:2179 | No text annotation Not in a motif group | homologous IL_3U4M_002 IL_45944.3 | |
| IL_4V5A_136 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_4V5A_137 | 1/BA/2400:2403, 1/BA/2414:2416 | No text annotation Not in a motif group | ||
| IL_4V5A_138 | 1/BA/2453:2454, 1/BA/2498:2500 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.2 | |
| IL_4V5A_139 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_4V5A_140 | 1/BA/2457:2459, 1/BA/2493:2494 | Major groove platform Not in a motif group | homologous IL_7A0S_085 IL_27635.1 | |
| IL_4V5A_141 | 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_92788.2 | |
| IL_4V5A_143 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_4V5A_144 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_340 IL_90933.2 | |
| IL_4V5A_145 | 1/BA/2512:2513, 1/BA/2571:2574 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.2 | |
| IL_4V5A_146 | 1/BA/2522:2523, 1/BA/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_4WF9_097 IL_95601.3 | |
| IL_4V5A_147 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_4V5A_148 | 1/BA/2635:2640, 1/BA/2774:2783 | No text annotation Not in a motif group | ||
| IL_4V5A_149 | 1/BA/2680:2686, 1/BA/2723:2727 | No text annotation Not in a motif group | ||
| IL_4V5A_150 | 1/BA/2687:2691, 1/BA/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_4V5A_151 | 1/BA/2695:2697, 1/BA/2710:2714 | No text annotation Not in a motif group | geometric IL_5VSU_002 IL_55351.2 | |
| IL_4V5A_152 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_4V5A_153 | 1/BA/2838:2840, 1/BA/2877:2880 | Single bulged G, near cWW Not in a motif group | geometric IL_5J7L_008 IL_82068.2 | |
| IL_4V5A_154 | 1/BA/2843:2846, 1/BA/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_4V5A_155 | 1/BA/2847:2852, 1/BA/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_4V5A_156 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation Not in a motif group | homologous IL_4V9F_101 IL_37497.2 | |
| IL_4V5A_157 | 1/BB/23:28, 1/BB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_4V5A_158 | 1/BB/30:32, 1/BB/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_4V5A_159 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_5NS3_002 IL_58103.6 | |
| IL_4V5A_160 | 1/BB/71:79, 1/BB/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_4V5A_161 | 1/CA/30:32, 1/CA/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_4V5A_162 | 1/CA/44:45, 1/CA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_4V5A_163 | 1/CA/47:52, 1/CA/359:361 | No text annotation Not in a motif group | geometric IL_4LFB_003 IL_11178.1 | |
| IL_4V5A_164 | 1/CA/63:66, 1/CA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_76389.1 | |
| IL_4V5A_165 | 1/CA/67:69, 1/CA/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_4V5A_166 | 1/CA/129:131, 1/CA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_4V5A_167 | 1/CA/132:136, 1/CA/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_4V5A_168 | 1/CA/148:153, 1/CA/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_4V5A_169 | 1/CA/186:188, 1/CA/189L:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_4V5A_170 | 1/CA/242:247, 1/CA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_4V5A_171 | 1/CA/249:253, 1/CA/273:275 | No text annotation Not in a motif group | homologous IL_6CZR_124 IL_38684.1 | |
| IL_4V5A_172 | 1/CA/292:293, 1/CA/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_4V5A_173 | 1/CA/367:369, 1/CA/392:393 | Single bulged U Not in a motif group | geometric IL_4LFB_014 IL_83039.13 | |
| IL_4V5A_174 | 1/CA/371:375, 1/CA/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_4V5A_175 | 1/CA/375:376, 1/CA/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.2 | |
| IL_4V5A_176 | 1/CA/409:416, 1/CA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_4V5A_177 | 1/CA/445:450, 1/CA/483:489 | No text annotation Not in a motif group | ||
| IL_4V5A_178 | 1/CA/450:456, 1/CA/475:483 | No text annotation Not in a motif group | homologous IL_6CZR_131 IL_30149.1 | |
| IL_4V5A_179 | 1/CA/504:511, 1/CA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_4V5A_180 | 1/CA/515:521, 1/CA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4V5A_181 | 1/CA/569:575, 1/CA/880:881 | No text annotation Not in a motif group | ||
| IL_4V5A_182 | 1/CA/580:584, 1/CA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_4V5A_183 | 1/CA/594:597, 1/CA/643:645 | No text annotation Not in a motif group | homologous IL_6CZR_136 IL_05564.2 | |
| IL_4V5A_184 | 1/CA/597:598, 1/CA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | geometric IL_4PDB_002 IL_09061.6 | |
| IL_4V5A_185 | 1/CA/605:612, 1/CA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_4V5A_186 | 1/CA/654:655, 1/CA/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4LFB_027 IL_50694.2 | |
| IL_4V5A_187 | 1/CA/656:658, 1/CA/747:750 | No text annotation Not in a motif group | ||
| IL_4V5A_188 | 1/CA/662:666, 1/CA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_4V5A_189 | 1/CA/673:678, 1/CA/712:717 | No text annotation Not in a motif group | geometric IL_4LFB_030 IL_04668.1 | |
| IL_4V5A_190 | 1/CA/683:688, 1/CA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4V5A_191 | 1/CA/773:778, 1/CA/804:806 | No text annotation Not in a motif group | ||
| IL_4V5A_192 | 1/CA/779:784, 1/CA/798:803 | tSH-tHW-tHS-cWW Not in a motif group | geometric IL_3LQX_002 IL_76308.4 | |
| IL_4V5A_193 | 1/CA/887:894, 1/CA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4V5A_194 | 1/CA/922:923, 1/CA/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_4V5A_195 | 1/CA/925:927, 1/CA/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_4V5A_196 | 1/CA/933:936, 1/CA/1379:1384 | No text annotation Not in a motif group | geometric IL_6CZR_149 IL_93211.1 | |
| IL_4V5A_197 | 1/CA/952:954, 1/CA/1226:1229 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4WF9_003 IL_65006.1 | |
| IL_4V5A_200 | 1/CA/1008:1011, 1/CA/1019:1021 | No text annotation Not in a motif group | ||
| IL_4V5A_201 | 1/CA/1011:1012, 1/CA/1017:1019 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_4V5A_202 | 1/CA/1048:1050, 1/CA/1208:1209 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.13 | |
| IL_4V5A_203 | 1/CA/1051:1056, 1/CA/1204:1207 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_4V5A_204 | 1/CA/1057:1058, 1/CA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_4V5A_205 | 1/CA/1060:1061, 1/CA/1195:1197 | Single bulged U Not in a motif group | homologous IL_6CZR_156 IL_83039.13 | |
| IL_4V5A_206 | 1/CA/1061:1063, 1/CA/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_4V5A_207 | 1/CA/1158:1162, 1/CA/1174:1181 | No text annotation Not in a motif group | ||
| IL_4V5A_208 | 1/CA/1247:1253, 1/CA/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_4V5A_209 | 1/CA/1254:1259, 1/CA/1276:1283 | No text annotation Not in a motif group | ||
| IL_4V5A_210 | 1/CA/1259:1262, 1/CA/1273:1276 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.9 | |
| IL_4V5A_211 | 1/CA/1303:1308, 1/CA/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_4V5A_212 | 1/CA/1399:1401, 1/CA/1501:1504 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
| IL_4V5A_213 | 1/CA/1401:1404, 1/CA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4V5A_214 | 1/CA/1405:1407, 1/CA/1494:1496 | No text annotation Not in a motif group | geometric IL_5VCI_002 IL_95997.1 | |
| IL_4V5A_215 | 1/CA/1407:1409, 1/CA/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_4V5A_216 | 1/CA/1412:1414, 1/CA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_4V5A_217 | 1/CA/1416:1419, 1/CA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_4V5A_218 | 1/CA/1431:1435, 1/CA/1466:1469 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.1 | |
| IL_4V5A_219 | 1/CA/1435:1438, 1/CA/1463:1466 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_002 IL_30621.2 | |
| IL_4V5A_220 | 1/CA/1440:1443, 1/CA/1459:1461 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.2 | |
| IL_4V5A_221 | 1/DA/24:30, 1/DA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7RQB_001 IL_66414.6 | |
| IL_4V5A_222 | 1/DA/36:37, 1/DA/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_4V5A_223 | 1/DA/42:43, 1/DA/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
| IL_4V5A_224 | 1/DA/81:85, 1/DA/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_4V5A_225 | 1/DA/183:184, 1/DA/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_4V5A_226 | 1/DA/188:194, 1/DA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_4V5A_227 | 1/DA/238:245, 1/DA/253:259 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7A0S_007 IL_04346.7 | |
| IL_4V5A_228 | 1/DA/272D:272G, 1/DA/363C:364 | No text annotation Not in a motif group | ||
| IL_4V5A_229 | 1/DA/272I:280, 1/DA/360:363A | No text annotation Not in a motif group | ||
| IL_4V5A_230 | 1/DA/280:290, 1/DA/350:360 | No text annotation Not in a motif group | ||
| IL_4V5A_231 | 1/DA/293:295, 1/DA/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_4V5A_232 | 1/DA/481:484, 1/DA/496:509 | No text annotation Not in a motif group | geometric IL_7RQB_014 IL_60992.6 | |
| IL_4V5A_233 | 1/DA/606:610, 1/DA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
| IL_4V5A_234 | 1/DA/672:674, 1/DA/806:808 | No text annotation Not in a motif group | homologous IL_7A0S_014 IL_95997.1 | |
| IL_4V5A_235 | 1/DA/674:679, 1/DA/798:806 | No text annotation Not in a motif group | ||
| IL_4V5A_236 | 1/DA/697:698, 1/DA/763:765 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_37497.2 | |
| IL_4V5A_237 | 1/DA/702:703, 1/DA/728:730 | Single bulged G Not in a motif group | homologous IL_4WF9_023 IL_00225.2 | |
| IL_4V5A_238 | 1/DA/703:707, 1/DA/724:728 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.8 | |
| IL_4V5A_239 | 1/DA/738:741, 1/DA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_4V5A_240 | 1/DA/775:777, 1/DA/787:791 | Multiple bulged bases Not in a motif group | geometric IL_4WF9_027 IL_90991.6 | |
| IL_4V5A_241 | 1/DA/837:838, 1/DA/940:942 | Single stack bend Not in a motif group | homologous IL_4WF9_028 IL_92001.1 | |
| IL_4V5A_242 | 1/DA/844:846, 1/DA/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
| IL_4V5A_243 | 1/DA/846:850, 1/DA/927:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 IL_94165.1 | |
| IL_4V5A_244 | 1/DA/858:862, 1/DA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7RQB_027 IL_38862.1 | |
| IL_4V5A_245 | 1/DA/862:863, 1/DA/913:915 | Minor groove platform Not in a motif group | homologous IL_4WF9_032 IL_42622.2 | |
| IL_4V5A_246 | 1/DA/864:868, 1/DA/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_4V5A_247 | 1/DA/870:872, 1/DA/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 IL_52767.2 | |
| IL_4V5A_248 | 1/DA/875:877, 1/DA/899:902 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
| IL_4V5A_250 | 1/DA/952:954, 1/DA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_4V5A_251 | 1/DA/994:996, 1/DA/1159:1160 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_4V5A_252 | 1/DA/998:1002, 1/DA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
| IL_4V5A_253 | 1/DA/1004:1011, 1/DA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.7 | |
| IL_4V5A_254 | 1/DA/1011:1013, 1/DA/1149:1150 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_4V5A_255 | 1/DA/1018:1024, 1/DA/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_4V5A_256 | 1/DA/1024:1030, 1/DA/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_4V5A_257 | 1/DA/1031:1034, 1/DA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_4V5A_258 | 1/DA/1196:1198, 1/DA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7A0S_041 IL_52767.2 | |
| IL_4V5A_259 | 1/DA/1202:1206, 1/DA/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_4V5A_260 | 1/DA/1208:1216, 1/DA/1233:1238 | No text annotation Not in a motif group | ||
| IL_4V5A_261 | 1/DA/1219:1221, 1/DA/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_4V5A_262 | 1/DA/1262:1269, 1/DA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_4V5A_263 | 1/DA/1319:1324, 1/DA/1330:1333 | No text annotation Not in a motif group | ||
| IL_4V5A_264 | 1/DA/1351:1355, 1/DA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_4V5A_265 | 1/DA/1357:1361, 1/DA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_4V5A_266 | 1/DA/1414:1416, 1/DA/1582:1588 | No text annotation Not in a motif group | ||
| IL_4V5A_267 | 1/DA/1417:1421, 1/DA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_4V5A_268 | 1/DA/1433:1435, 1/DA/1557:1560 | No text annotation Not in a motif group | homologous IL_7A0S_052 IL_55351.2 | |
| IL_4V5A_269 | 1/DA/1437:1440, 1/DA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_4V5A_271 | 1/DA/1469:1473, 1/DA/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_4V5A_272 | 1/DA/1481:1484, 1/DA/1506:1510 | No text annotation Not in a motif group | ||
| IL_4V5A_273 | 1/DA/1484:1486, 1/DA/1503:1506 | No text annotation Not in a motif group | ||
| IL_4V5A_274 | 1/DA/1489:1491, 1/DA/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_4V5A_275 | 1/DA/1651:1656, 1/DA/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_4V5A_276 | 1/DA/1663:1665, 1/DA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_4V5A_277 | 1/DA/1666:1669, 1/DA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4WF9_064 IL_50694.2 | |
| IL_4V5A_278 | 1/DA/1669:1674, 1/DA/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_7RQB_067 IL_82842.2 | |
| IL_4V5A_279 | 1/DA/1686:1691, 1/DA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
| IL_4V5A_280 | 1/DA/1770:1771, 1/DA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_4V5A_281 | 1/DA/1798:1804, 1/DA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_4V5A_282 | 1/DA/1837:1840, 1/DA/1902:1903 | No text annotation Not in a motif group | ||
| IL_4V5A_283 | 1/DA/1841:1842, 1/DA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_4V5A_284 | 1/DA/1846:1849, 1/DA/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_4V5A_285 | 1/DA/1851:1855, 1/DA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_4V5A_286 | 1/DA/1856:1860, 1/DA/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_4V5A_287 | 1/DA/1933:1934, 1/DA/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_318 IL_59677.2 | |
| IL_4V5A_288 | 1/DA/1934:1945, 1/DA/1961:1964 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_4V5A_289 | 1/DA/2050:2052, 1/DA/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_4V5A_290 | 1/DA/2067:2069, 1/DA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_4V5A_291 | 1/DA/2070:2071, 1/DA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_4V5A_292 | 1/DA/2081:2083, 1/DA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_4V5A_293 | 1/DA/2085:2087, 1/DA/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_4V5A_294 | 1/DA/2107:2110, 1/DA/2179:2182 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.2 | |
| IL_4V5A_295 | 1/DA/2110:2120, 1/DA/2178:2179 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_59677.2 | |
| IL_4V5A_296 | 1/DA/2350:2353, 1/DA/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_4V5A_297 | 1/DA/2400:2403, 1/DA/2414:2416 | No text annotation Not in a motif group | ||
| IL_4V5A_298 | 1/DA/2453:2454, 1/DA/2498:2500 | Single stack bend Not in a motif group | homologous IL_7RQB_091 IL_76488.2 | |
| IL_4V5A_299 | 1/DA/2454:2455, 1/DA/2496:2498 | Major groove platform Not in a motif group | geometric IL_4V9F_082 IL_27635.1 | |
| IL_4V5A_300 | 1/DA/2457:2459, 1/DA/2493:2494 | Major groove platform Not in a motif group | homologous IL_7A0S_085 IL_27635.1 | |
| IL_4V5A_301 | 1/DA/2459:2461, 1/DA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_92788.2 | |
| IL_4V5A_302 | 1/DA/2466:2470, 1/DA/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_4V5A_303 | 1/DA/2507:2508, 1/DA/2580:2582 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_4V5A_304 | 1/DA/2510:2512, 1/DA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_340 IL_90933.2 | |
| IL_4V5A_305 | 1/DA/2512:2513, 1/DA/2571:2574 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_4V5A_306 | 1/DA/2522:2523, 1/DA/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_4WF9_097 IL_95601.3 | |
| IL_4V5A_307 | 1/DA/2591:2592, 1/DA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_4V5A_308 | 1/DA/2635:2640, 1/DA/2774:2783 | No text annotation Not in a motif group | ||
| IL_4V5A_309 | 1/DA/2680:2686, 1/DA/2723:2727 | No text annotation Not in a motif group | ||
| IL_4V5A_310 | 1/DA/2687:2691, 1/DA/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_4V5A_311 | 1/DA/2695:2697, 1/DA/2710:2714 | No text annotation Not in a motif group | geometric IL_5VSU_002 IL_55351.2 | |
| IL_4V5A_312 | 1/DA/2737:2742, 1/DA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_4V5A_313 | 1/DA/2838:2840, 1/DA/2877:2880 | Single bulged G, near cWW Not in a motif group | geometric IL_5J7L_008 IL_82068.2 | |
| IL_4V5A_314 | 1/DA/2843:2846, 1/DA/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_4V5A_315 | 1/DA/2847:2852, 1/DA/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_4V5A_316 | 1/DB/17:18, 1/DB/65:67 | Major groove intercalation Not in a motif group | homologous IL_4V9F_101 IL_37497.2 | |
| IL_4V5A_317 | 1/DB/23:28, 1/DB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_4V5A_318 | 1/DB/30:32, 1/DB/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_4V5A_319 | 1/DB/34:38, 1/DB/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_5NS3_002 IL_58103.6 | |
| IL_4V5A_320 | 1/DB/71:79, 1/DB/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V5A_038 | No text annotation | ||
| IL_4V5A_039 | No text annotation | ||
| IL_4V5A_040 | No text annotation | ||
| IL_4V5A_110 | Single stack bend | ||
| IL_4V5A_134 | Tandem non-canonical cWW pairs | ||
| IL_4V5A_142 | Triple sheared | ||
| IL_4V5A_198 | No text annotation | ||
| IL_4V5A_199 | No text annotation | ||
| IL_4V5A_249 | No text annotation | ||
| IL_4V5A_270 | Single stack bend |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V5A_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation Not in a motif group | ||
| J3_4V5A_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation Not in a motif group | ||
| J3_4V5A_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation Not in a motif group | ||
| J3_4V5A_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation Not in a motif group | ||
| J3_4V5A_005 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation Not in a motif group | ||
| J3_4V5A_006 | 1/AA/941:946, 1/AA/1235:1237, 1/AA/1337:1342 | No text annotation Not in a motif group | ||
| J3_4V5A_007 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation Not in a motif group | ||
| J3_4V5A_008 | 1/AA/990:993, 1/AA/1045:1048, 1/AA/1209:1215 | No text annotation Not in a motif group | ||
| J3_4V5A_009 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation Not in a motif group | ||
| J3_4V5A_010 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_4V5A_011 | 1/AA/1115:1118, 1/AA/1155:1158, 1/AA/1181:1185 | No text annotation Not in a motif group | ||
| J3_4V5A_012 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA | |
| J3_4V5A_013 | 1/BA/30:31, 1/BA/474:481, 1/BA/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_4V5A_014 | 1/BA/56:57, 1/BA/70:76, 1/BA/110:114 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
| J3_4V5A_015 | 1/BA/269:271B, 1/BA/271V:272C, 1/BA/365:370 | No text annotation Not in a motif group | ||
| J3_4V5A_016 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation Not in a motif group | homologous J3_7A0S_004 NA | |
| J3_4V5A_017 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation Not in a motif group | homologous J3_4WF9_003 NA | |
| J3_4V5A_018 | 1/BA/1298:1303, 1/BA/1625:1628, 1/BA/1638:1642 | No text annotation Not in a motif group | ||
| J3_4V5A_019 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_4V5A_020 | 1/BA/1344:1350, 1/BA/1381:1385, 1/BA/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_4V5A_021 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_4V5A_022 | 1/BA/2295:2299, 1/BA/2317:2323, 1/BA/2332:2337 | No text annotation Not in a motif group | ||
| J3_4V5A_023 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation Not in a motif group | ||
| J3_4V5A_024 | 1/BA/2814:2815, 1/BA/2831:2836, 1/BA/2882:2886 | No text annotation Not in a motif group | ||
| J3_4V5A_025 | 1/BB/11:16, 1/BB/68:69, 1/BB/108:110 | No text annotation Not in a motif group | homologous J3_7RQB_015 NA | |
| J3_4V5A_026 | 1/CA/46:47, 1/CA/361:367, 1/CA/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_4V5A_027 | 1/CA/586:588, 1/CA/651:654, 1/CA/754:755 | No text annotation Not in a motif group | homologous J3_6CZR_016 NA | |
| J3_4V5A_028 | 1/CA/672:673, 1/CA/717:725, 1/CA/732:734 | No text annotation Not in a motif group | homologous J3_6CZR_017 NA | |
| J3_4V5A_029 | 1/CA/826:829, 1/CA/857:861, 1/CA/868:874 | No text annotation Not in a motif group | ||
| J3_4V5A_030 | 1/CA/936:939, 1/CA/1344:1350, 1/CA/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_4V5A_031 | 1/CA/941:946, 1/CA/1235:1237, 1/CA/1337:1342 | No text annotation Not in a motif group | ||
| J3_4V5A_032 | 1/CA/955:962, 1/CA/973:984, 1/CA/1221:1225 | No text annotation Not in a motif group | ||
| J3_4V5A_033 | 1/CA/990:993, 1/CA/1045:1048, 1/CA/1209:1215 | No text annotation Not in a motif group | ||
| J3_4V5A_034 | 1/CA/1063:1068, 1/CA/1107:1113, 1/CA/1187:1193 | No text annotation Not in a motif group | ||
| J3_4V5A_035 | 1/CA/1073:1074, 1/CA/1083:1087, 1/CA/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_4V5A_036 | 1/CA/1115:1118, 1/CA/1155:1158, 1/CA/1181:1185 | No text annotation Not in a motif group | ||
| J3_4V5A_037 | 1/CA/1237:1241, 1/CA/1296:1303, 1/CA/1334:1337 | No text annotation Not in a motif group | ||
| J3_4V5A_038 | 1/DA/30:31, 1/DA/474:481, 1/DA/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_4V5A_039 | 1/DA/56:57, 1/DA/70:76, 1/DA/110:114 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
| J3_4V5A_040 | 1/DA/269:271B, 1/DA/271V:272C, 1/DA/365:370 | No text annotation Not in a motif group | ||
| J3_4V5A_041 | 1/DA/683:689, 1/DA/773:775, 1/DA/791:794 | No text annotation Not in a motif group | homologous J3_7A0S_004 NA | |
| J3_4V5A_042 | 1/DA/698:700, 1/DA/732:736, 1/DA/760:763 | No text annotation Not in a motif group | homologous J3_4WF9_003 NA | |
| J3_4V5A_043 | 1/DA/1298:1303, 1/DA/1625:1628, 1/DA/1638:1642 | No text annotation Not in a motif group | ||
| J3_4V5A_044 | 1/DA/1306:1309, 1/DA/1605:1611, 1/DA/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_4V5A_045 | 1/DA/1344:1350, 1/DA/1381:1385, 1/DA/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_4V5A_046 | 1/DA/2091:2093, 1/DA/2196:2200, 1/DA/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_4V5A_047 | 1/DA/2295:2299, 1/DA/2317:2323, 1/DA/2332:2337 | No text annotation Not in a motif group | ||
| J3_4V5A_048 | 1/DA/2517:2520, 1/DA/2545:2547, 1/DA/2561:2567 | No text annotation Not in a motif group | ||
| J3_4V5A_049 | 1/DA/2814:2815, 1/DA/2831:2836, 1/DA/2882:2886 | No text annotation Not in a motif group | ||
| J3_4V5A_050 | 1/DB/11:16, 1/DB/68:69, 1/DB/108:110 | No text annotation Not in a motif group | homologous J3_7RQB_015 NA |
Problematic loops
No problematic loops
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