Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5NWY_0011/0/12:22No text annotation
Not in a motif group
homologous
HL_5J7L_001
HL_89881.2
HL_5NWY_0021/0/81:88No text annotation
Not in a motif group
HL_5NWY_0031/0/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_35490.1
HL_5NWY_0041/0/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_35490.1
HL_5NWY_0051/0/207:212No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_5NWY_0061/0/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_5NWY_0071/0/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_35490.1
HL_5NWY_0081/0/320:333No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_5NWY_0091/0/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_5NWY_0101/0/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_35490.1
HL_5NWY_0111/0/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_5NWY_0121/0/462:470No text annotation
Not in a motif group
homologous
HL_5J7L_012
HL_84085.2
HL_5NWY_0131/0/522:527No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_70546.1
HL_5NWY_0141/0/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.3
HL_5NWY_0151/0/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_5NWY_0161/0/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_5NWY_0171/0/786:796No text annotation
Not in a motif group
homologous
HL_5J7L_017
HL_12326.1
HL_5NWY_0181/0/840:846No text annotation
Not in a motif group
HL_5NWY_0191/0/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_35490.1
HL_5NWY_0201/0/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_35490.1
HL_5NWY_0211/0/963:972No text annotation
Not in a motif group
homologous
HL_5J7L_021
NA
HL_5NWY_0221/0/1009:1019No text annotation
Not in a motif group
HL_5NWY_0231/0/1028:1033No text annotation
Not in a motif group
geometric
HL_6CZR_082
HL_03562.2
HL_5NWY_0241/0/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_35490.1
HL_5NWY_0251/0/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_5NWY_0261/0/1133:1141No text annotation
Not in a motif group
HL_5NWY_0271/0/1165:1171No text annotation
Not in a motif group
homologous
HL_5J7L_026
HL_90617.2
HL_5NWY_0281/0/1265:1270GNRA
Not in a motif group
homologous
HL_5J7L_027
HL_35490.1
HL_5NWY_0291/0/1314:1323No text annotation
Not in a motif group
homologous
HL_5J7L_028
HL_89380.2
HL_5NWY_0301/0/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_5NWY_0311/0/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_5NWY_0321/0/1515:1520No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_5NWY_0331/M/12:22No text annotation
Not in a motif group
homologous
HL_1SER_001
NA
HL_5NWY_0341/M/30:38tRNA anticodon loop
Not in a motif group
homologous
HL_6UFM_002
HL_53597.4
HL_5NWY_0351/M/52:60T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4WJ4_003
HL_22280.3
HL_5NWY_0361/N/59:68No text annotation
Not in a motif group
homologous
HL_5J7L_134
HL_18177.1
HL_5NWY_0371/N/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_12078.3
HL_5NWY_0381/N/123:128No text annotation
Not in a motif group
homologous
HL_5J7L_136
HL_70546.1
HL_5NWY_0391/N/137:142No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_70072.1
HL_5NWY_0401/N/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_5NWY_0411/N/194:201No text annotation
Not in a motif group
geometric
HL_5J7L_139
HL_06192.2
HL_5NWY_0421/N/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_56241.1
HL_5NWY_0431/N/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_5NWY_0441/N/305:312No text annotation
Not in a motif group
homologous
HL_7A0S_010
HL_89380.2
HL_5NWY_0451/N/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_70546.1
HL_5NWY_0461/N/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.9
HL_5NWY_0471/N/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_5NWY_0481/N/410:417No text annotation
Not in a motif group
homologous
HL_5J7L_146
HL_96598.1
HL_5NWY_0491/N/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_35490.1
HL_5NWY_0501/N/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_35490.1
HL_5NWY_0511/N/543:550No text annotation
Not in a motif group
homologous
HL_5J7L_149
HL_79531.1
HL_5NWY_0521/N/566:575T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_5J7L_150
HL_89380.2
HL_5NWY_0531/N/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.2
HL_5NWY_0541/N/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_35490.1
HL_5NWY_0551/N/641:647No text annotation
Not in a motif group
homologous
HL_5J7L_153
HL_77805.2
HL_5NWY_0561/N/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_5NWY_0571/N/744:753No text annotation
Not in a motif group
homologous
HL_7A0S_022
HL_39334.6
HL_5NWY_0581/N/779:785No text annotation
Not in a motif group
homologous
HL_7A0S_023
HL_56241.1
HL_5NWY_0591/N/826:831No text annotation
Not in a motif group
homologous
HL_5J7L_157
HL_53619.1
HL_5NWY_0611/N/955:962GNRA
Not in a motif group
homologous
HL_4WF9_027
HL_35490.1
HL_5NWY_0621/N/978:985No text annotation
Not in a motif group
homologous
HL_7A0S_027
HL_64430.2
HL_5NWY_0631/N/1063:1075No text annotation
Not in a motif group
HL_5NWY_0641/N/1092:1099No text annotation
Not in a motif group
homologous
HL_6PRV_002
HL_84085.2
HL_5NWY_0651/N/1172:1177No text annotation
Not in a motif group
HL_5NWY_0661/N/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_87030.2
HL_5NWY_0671/N/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_5NWY_0681/N/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_5NWY_0691/N/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_5NWY_0701/N/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_5NWY_0711/N/1451:1459No text annotation
Not in a motif group
homologous
HL_5J7L_169
HL_53837.2
HL_5NWY_0721/N/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_5NWY_0731/N/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_03562.2
HL_5NWY_0741/N/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.4
HL_5NWY_0751/N/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_5NWY_0761/N/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_35490.1
HL_5NWY_0771/N/1691:1696No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_03562.2
HL_5NWY_0781/N/1728:1731No text annotation
Not in a motif group
geometric
HL_5J7L_176
HL_98426.1
HL_5NWY_0791/N/1752:1756No text annotation
Not in a motif group
homologous
HL_5J7L_177
HL_76539.4
HL_5NWY_0801/N/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_5NWY_0811/N/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_35490.1
HL_5NWY_0821/N/1868:1873Other HL
Not in a motif group
homologous
HL_5J7L_180
HL_35490.1
HL_5NWY_0831/N/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_5NWY_0841/N/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_5NWY_0851/N/2027:2036No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_5NWY_0861/N/2143:2148No text annotation
Not in a motif group
homologous
HL_5J7L_184
NA
HL_5NWY_0871/N/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_5NWY_0881/N/2248:2256No text annotation
Not in a motif group
homologous
HL_7A0S_052
HL_53171.2
HL_5NWY_0891/N/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_5NWY_0901/N/2303:2313No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_5NWY_0911/N/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.3
HL_5NWY_0921/N/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_5NWY_0931/N/2374:2379GNRA
Not in a motif group
homologous
HL_5J7L_191
HL_35490.1
HL_5NWY_0941/N/2404:2413No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_40210.1
HL_5NWY_0951/N/2471:2479No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_5NWY_0961/N/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_91104.1
HL_5NWY_0971/N/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_5NWY_0981/N/2594:2599GNRA
Not in a motif group
homologous
HL_5J7L_196
HL_35490.1
HL_5NWY_0991/N/2658:2663No text annotation
Not in a motif group
homologous
HL_7RQB_064
HL_35490.1
HL_5NWY_1001/N/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_5NWY_1011/N/2745:2759No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_5NWY_1021/N/2796:2799No text annotation
Not in a motif group
geometric
HL_4V88_192
HL_53837.2
HL_5NWY_1031/N/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_64690.1
HL_5NWY_1041/N/2856:2861Other HL
Not in a motif group
homologous
HL_5J7L_202
HL_35490.1
HL_5NWY_1051/O/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.2
HL_5NWY_1061/O/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.4

Problematic loops

#loop idProblemSequence
HL_5NWY_060No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5NWY_0011/0/30:32,
1/0/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.3
IL_5NWY_0021/0/44:45,
1/0/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.5
IL_5NWY_0031/0/47:52,
1/0/359:361
No text annotation
Not in a motif group
homologous
IL_5J7L_003
IL_14177.1
IL_5NWY_0041/0/54:56,
1/0/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_42622.3
IL_5NWY_0051/0/63:66,
1/0/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_5NWY_0061/0/67:69,
1/0/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_5NWY_0071/0/70:73,
1/0/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_5NWY_0081/0/75:76,
1/0/93:95
Single bulged G
Not in a motif group
geometric
IL_5DEA_002
IL_00225.3
IL_5NWY_0091/0/128:131,
1/0/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_43275.1
IL_5NWY_0101/0/132:136,
1/0/227:230
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_5NWY_0111/0/144:146,
1/0/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_70707.1
IL_5NWY_0121/0/147:153,
1/0/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_5NWY_0131/0/203:206,
1/0/213:214
Minor groove platform
Not in a motif group
geometric
IL_3IWN_005
IL_15052.1
IL_5NWY_0141/0/242:247,
1/0/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_5NWY_0151/0/249:252,
1/0/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_5NWY_0161/0/292:293,
1/0/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_5NWY_0171/0/367:369,
1/0/392:393
Single bulged U
Not in a motif group
homologous
IL_5J7L_017
IL_83039.16
IL_5NWY_0181/0/371:375,
1/0/389:390
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_5NWY_0191/0/375:376,
1/0/387:389
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.3
IL_5NWY_0201/0/409:416,
1/0/427:433
No text annotation
Not in a motif group
homologous
IL_5J7L_020
IL_28026.1
IL_5NWY_0211/0/440:442,
1/0/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_5NWY_0221/0/446:450,
1/0/483:488
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_88269.3
IL_5NWY_0231/0/450:455,
1/0/477:483
No text annotation
Not in a motif group
geometric
IL_5J7L_023
IL_70801.1
IL_5NWY_0241/0/504:511,
1/0/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_5NWY_0251/0/515:521,
1/0/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_5NWY_0261/0/569:575,
1/0/880:881
No text annotation
Not in a motif group
homologous
IL_5J7L_026
IL_69996.1
IL_5NWY_0271/0/580:584,
1/0/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_5NWY_0281/0/594:596,
1/0/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.3
IL_5NWY_0291/0/597:598,
1/0/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.7
IL_5NWY_0301/0/605:612,
1/0/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_5NWY_0311/0/654:655,
1/0/751:754
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_5J7L_031
IL_50694.2
IL_5NWY_0321/0/658:659,
1/0/746:748
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.3
IL_5NWY_0331/0/662:666,
1/0/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_5NWY_0341/0/673:678,
1/0/712:717
No text annotation
Not in a motif group
homologous
IL_5J7L_034
IL_04668.2
IL_5NWY_0351/0/684:688,
1/0/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_5NWY_0361/0/774:778,
1/0/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_5NWY_0371/0/779:783,
1/0/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_5NWY_0381/0/887:894,
1/0/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_5NWY_0391/0/922:923,
1/0/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.5
IL_5NWY_0401/0/925:927,
1/0/1390:1391
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_00225.3
IL_5NWY_0411/0/933:935,
1/0/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_5NWY_0421/0/953:954,
1/0/1226:1228
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_42622.3
IL_5NWY_0431/0/993:997,
1/0/1044:1045
Minor groove platform
Not in a motif group
homologous
IL_5J7L_043
IL_47078.1
IL_5NWY_0441/0/998:999,
1/0/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.3
IL_5NWY_0451/0/1008:1009,
1/0/1019:1021
Single stack bend
Not in a motif group
geometric
IL_4WF9_007
IL_76488.3
IL_5NWY_0461/0/1048:1050,
1/0/1208:1209
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.16
IL_5NWY_0471/0/1051:1056,
1/0/1204:1207
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_473
IL_30621.3
IL_5NWY_0481/0/1057:1058,
1/0/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_88739.2
IL_5NWY_0491/0/1060:1061,
1/0/1195:1197
Single bulged A
Not in a motif group
geometric
IL_5J7L_049
IL_37497.5
IL_5NWY_0501/0/1061:1063,
1/0/1193:1195
No text annotation
Not in a motif group
homologous
IL_5J7L_050
IL_86319.2
IL_5NWY_0511/0/1124:1128,
1/0/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_5NWY_0521/0/1129:1132,
1/0/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_5NWY_0531/0/1158:1161,
1/0/1175:1181
No text annotation
Not in a motif group
homologous
IL_5J7L_053
IL_42032.1
IL_5NWY_0541/0/1247:1253,
1/0/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_5NWY_0551/0/1255:1258,
1/0/1277:1282
No text annotation
Not in a motif group
homologous
IL_5J7L_055
IL_75461.4
IL_5NWY_0561/0/1259:1263,
1/0/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_5NWY_0571/0/1303:1308,
1/0/1329:1334
No text annotation
Not in a motif group
geometric
IL_5J7L_057
IL_19954.2
IL_5NWY_0581/0/1399:1401,
1/0/1501:1504
No text annotation
Not in a motif group
geometric
IL_5J7L_058
IL_36143.3
IL_5NWY_0591/0/1401:1404,
1/0/1497:1501
No text annotation
Not in a motif group
IL_5NWY_0601/0/1405:1407,
1/0/1494:1496
No text annotation
Not in a motif group
geometric
IL_5MWI_007
IL_86319.2
IL_5NWY_0611/0/1407:1409,
1/0/1491:1494
No text annotation
Not in a motif group
IL_5NWY_0621/0/1412:1414,
1/0/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_86319.2
IL_5NWY_0631/0/1416:1419,
1/0/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.10
IL_5NWY_0641/0/1430:1435,
1/0/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_5NWY_0651/0/1440:1442,
1/0/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.3
IL_5NWY_0661/0/1445:1448,
1/0/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.7
IL_5NWY_0671/N/24:30,
1/N/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_245
IL_66414.6
IL_5NWY_0681/N/36:37,
1/N/442:444
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.5
IL_5NWY_0691/N/43:44,
1/N/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.3
IL_5NWY_0701/N/81:85,
1/N/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_5NWY_0711/N/183:184,
1/N/212:214
Single stack bend
Not in a motif group
homologous
IL_4WF9_007
IL_76488.3
IL_5NWY_0721/N/188:194,
1/N/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_250
IL_04346.7
IL_5NWY_0731/N/239:245,
1/N/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_5NWY_0741/N/269:271,
1/N/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_5NWY_0751/N/274:281,
1/N/359:363
No text annotation
Not in a motif group
homologous
IL_5J7L_253
IL_77870.1
IL_5NWY_0761/N/293:295,
1/N/343:347
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_5NWY_0771/N/481:484,
1/N/496:509
No text annotation
Not in a motif group
homologous
IL_5J7L_255
IL_60992.6
IL_5NWY_0781/N/536:539,
1/N/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.10
IL_5NWY_0791/N/564:566,
1/N/575:577
No text annotation
Not in a motif group
homologous
IL_5J7L_257
IL_86319.2
IL_5NWY_0801/N/606:610,
1/N/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_5NWY_0811/N/672:674,
1/N/806:808
No text annotation
Not in a motif group
geometric
IL_7RQB_017
IL_86319.2
IL_5NWY_0821/N/674:678,
1/N/799:806
tHW-tHW cross-strand stack
Not in a motif group
homologous
IL_5J7L_260
IL_17470.6
IL_5NWY_0831/N/697:698,
1/N/763:765
Single bulged A
Not in a motif group
geometric
IL_4V9F_025
IL_37497.5
IL_5NWY_0841/N/702:703,
1/N/728:730
Single bulged G
Not in a motif group
homologous
IL_5J7L_262
IL_00225.3
IL_5NWY_0851/N/703:707,
1/N/724:728
Triple sheared
Not in a motif group
geometric
IL_7RQB_021
IL_56467.8
IL_5NWY_0861/N/738:740,
1/N/757:758
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_27635.3
IL_5NWY_0871/N/775:777,
1/N/787:791
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_265
IL_90991.6
IL_5NWY_0881/N/844:847,
1/N/933:934
Other IL
Not in a motif group
homologous
IL_5J7L_267
IL_92001.1
IL_5NWY_0891/N/847:848,
1/N/930:933
Stack outside cWW
Not in a motif group
geometric
IL_5J7L_268
IL_37629.1
IL_5NWY_0901/N/850:851,
1/N/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.3
IL_5NWY_0911/N/856:862,
1/N/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_5J7L_270
IL_93830.3
IL_5NWY_0921/N/862:863,
1/N/913:915
Single bulged G
Not in a motif group
geometric
IL_5J7L_271
IL_00225.3
IL_5NWY_0931/N/864:868,
1/N/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_5NWY_0941/N/870:872,
1/N/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_86319.2
IL_5NWY_0951/N/875:879,
1/N/898:902
Triple sheared
Not in a motif group
homologous
IL_5J7L_274
IL_56467.8
IL_5NWY_0961/N/880:881,
1/N/895:897
No text annotation
Not in a motif group
homologous
IL_5J7L_275
NA
IL_5NWY_0971/N/994:996,
1/N/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_5NWY_0981/N/998:1002,
1/N/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_4WF9_036
IL_89002.2
IL_5NWY_0991/N/1004:1011,
1/N/1150:1151
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_278
IL_15861.7
IL_5NWY_1001/N/1011:1013,
1/N/1149:1150
Single bulged U
Not in a motif group
geometric
IL_5J7L_279
IL_83039.16
IL_5NWY_1011/N/1018:1024,
1/N/1140:1144
No text annotation
Not in a motif group
geometric
IL_4WF9_039
IL_57188.3
IL_5NWY_1021/N/1024:1030,
1/N/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_5NWY_1031/N/1031:1034,
1/N/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_041
IL_43275.1
IL_5NWY_1041/N/1038:1041,
1/N/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.3
IL_5NWY_1051/N/1043:1051,
1/N/1108:1112
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_5NWY_1061/N/1059:1063,
1/N/1075:1079
No text annotation
Not in a motif group
IL_5NWY_1071/N/1087:1090,
1/N/1101:1102
Major groove platform
Not in a motif group
geometric
IL_3OXE_003
IL_27635.3
IL_5NWY_1081/N/1196:1198,
1/N/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_4WF9_044
IL_52767.4
IL_5NWY_1091/N/1202:1206,
1/N/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_5NWY_1101/N/1208:1215,
1/N/1234:1238
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_5NWY_1111/N/1262:1269,
1/N/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_5NWY_1121/N/1310:1313,
1/N/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4WF9_049
IL_50694.2
IL_5NWY_1131/N/1319:1323,
1/N/1331:1333
Major groove minor groove platform with tHH
Not in a motif group
homologous
IL_4WF9_050
IL_37712.2
IL_5NWY_1141/N/1351:1355,
1/N/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_5NWY_1151/N/1357:1361,
1/N/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_5NWY_1161/N/1415:1416,
1/N/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_5NWY_1171/N/1417:1421,
1/N/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_5NWY_1181/N/1432:1435,
1/N/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_5NWY_1191/N/1437:1440,
1/N/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_5J7L_297
IL_04059.1
IL_5NWY_1201/N/1450:1451,
1/N/1459:1461
Single bulged U
Not in a motif group
geometric
IL_5J7L_298
IL_83039.16
IL_5NWY_1211/N/1468:1471,
1/N/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_5NWY_1221/N/1474:1478,
1/N/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_5NWY_1231/N/1481:1482,
1/N/1507:1510
No text annotation
Not in a motif group
homologous
IL_5J7L_301
IL_67474.4
IL_5NWY_1241/N/1489:1491,
1/N/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.5
IL_5NWY_1251/N/1526:1529,
1/N/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_5NWY_1261/N/1651:1656,
1/N/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_5NWY_1271/N/1663:1665,
1/N/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_4WF9_063
IL_54997.7
IL_5NWY_1281/N/1666:1669,
1/N/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_066
IL_50694.2
IL_5NWY_1291/N/1669:1674,
1/N/1990:1993
Intercalated tWH
Not in a motif group
homologous
IL_4WF9_065
IL_76273.1
IL_5NWY_1301/N/1686:1691,
1/N/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_5J7L_308
IL_65969.2
IL_5NWY_1311/N/1712:1718,
1/N/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_5NWY_1321/N/1720:1724,
1/N/1736:1740
Triple sheared
Not in a motif group
homologous
IL_5J7L_310
IL_56467.8
IL_5NWY_1331/N/1727:1728,
1/N/1731:1733
Single bulged C
Not in a motif group
homologous
IL_5J7L_311
IL_61258.12
IL_5NWY_1341/N/1770:1771,
1/N/1980:1982
Single bulged A
Not in a motif group
homologous
IL_4WF9_068
IL_37497.5
IL_5NWY_1351/N/1798:1804,
1/N/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_5J7L_313
IL_17069.3
IL_5NWY_1361/N/1837:1840,
1/N/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.2
IL_5NWY_1371/N/1841:1842,
1/N/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_5NWY_1381/N/1846:1849,
1/N/1893:1894
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.7
IL_5NWY_1391/N/1864:1867,
1/N/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.2
IL_5NWY_1401/N/1933:1934,
1/N/1964:1967
Multiple bulged bases
Not in a motif group
geometric
IL_7RQB_076
IL_59677.2
IL_5NWY_1411/N/1934:1945,
1/N/1961:1964
No text annotation
Not in a motif group
homologous
IL_7A0S_072
IL_81589.2
IL_5NWY_1421/N/2050:2052,
1/N/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.3
IL_5NWY_1431/N/2054:2056,
1/N/2612:2615
No text annotation
Not in a motif group
homologous
IL_5J7L_321
IL_54678.5
IL_5NWY_1441/N/2067:2069,
1/N/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7RQB_080
IL_83039.16
IL_5NWY_1451/N/2070:2071,
1/N/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.3
IL_5NWY_1461/N/2081:2083,
1/N/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.7
IL_5NWY_1471/N/2085:2087,
1/N/2232:2234
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_86319.2
IL_5NWY_1481/N/2103:2108,
1/N/2181:2186
No text annotation
Not in a motif group
IL_5NWY_1491/N/2108:2110,
1/N/2179:2181
No text annotation
Not in a motif group
homologous
IL_3U4M_001
IL_86319.2
IL_5NWY_1501/N/2110:2121,
1/N/2177:2179
No text annotation
Not in a motif group
IL_5NWY_1511/N/2124:2127,
1/N/2161:2174
No text annotation
Not in a motif group
IL_5NWY_1521/N/2129:2138,
1/N/2153:2159
No text annotation
Not in a motif group
IL_5NWY_1531/N/2202:2204,
1/N/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.16
IL_5NWY_1541/N/2350:2353,
1/N/2364:2367
Double sheared
Not in a motif group
homologous
IL_5J7L_333