Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7KGB_0011/A/87:96No text annotation
Not in a motif group
homologous
HL_4WF9_002
HL_96598.1
HL_7KGB_0021/A/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_7KGB_0031/A/137:144No text annotation
Not in a motif group
homologous
HL_4WF9_004
HL_84085.2
HL_7KGB_0041/A/160:170No text annotation
Not in a motif group
HL_7KGB_0051/A/196:203No text annotation
Not in a motif group
geometric
HL_4WF9_006
HL_06192.2
HL_7KGB_0061/A/227:232No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_27930.1
HL_7KGB_0071/A/248:254No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_7KGB_0081/A/292:299No text annotation
Not in a motif group
geometric
HL_6R47_001
HL_12078.2
HL_7KGB_0091/A/337:346No text annotation
Not in a motif group
geometric
HL_4V9F_011
HL_75407.1
HL_7KGB_0101/A/388:395T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_7KGB_0111/A/402:406No text annotation
Not in a motif group
homologous
HL_7RQB_011
HL_75407.1
HL_7KGB_0121/A/410:418No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_7KGB_0131/A/470:482No text annotation
Not in a motif group
HL_7KGB_0141/A/499:506No text annotation
Not in a motif group
homologous
HL_5J7L_146
HL_96598.1
HL_7KGB_0151/A/551:556No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_42097.1
HL_7KGB_0161/A/576:581No text annotation
Not in a motif group
homologous
HL_7A0S_016
HL_42097.1
HL_7KGB_0171/A/638:644No text annotation
Not in a motif group
geometric
HL_5TBW_044
HL_09829.1
HL_7KGB_0181/A/668:677T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_4WF9_018
HL_89380.2
HL_7KGB_0191/A/715:720No text annotation
Not in a motif group
geometric
HL_2Y9H_003
HL_16173.1
HL_7KGB_0201/A/733:738No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_42097.1
HL_7KGB_0211/A/745:751No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_42097.1
HL_7KGB_0221/A/764:775No text annotation
Not in a motif group
HL_7KGB_0231/A/841:848No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_7KGB_0241/A/872:883No text annotation
Not in a motif group
HL_7KGB_0251/A/908:914No text annotation
Not in a motif group
homologous
HL_7RQB_024
HL_74322.1
HL_7KGB_0261/A/955:960No text annotation
Not in a motif group
homologous
HL_5J7L_157
HL_64365.1
HL_7KGB_0281/A/1083:1090No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.1
HL_7KGB_0291/A/1107:1114No text annotation
Not in a motif group
homologous
HL_4WF9_028
HL_64430.2
HL_7KGB_0301/A/1192:1204No text annotation
Not in a motif group
geometric
HL_6DTD_001
HL_09136.1
HL_7KGB_0311/A/1216:1231No text annotation
Not in a motif group
HL_7KGB_0321/A/1303:1308No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_7KGB_0331/A/1353:1358No text annotation
Not in a motif group
homologous
HL_4WF9_031
HL_87030.2
HL_7KGB_0341/A/1412:1420No text annotation
Not in a motif group
homologous
HL_7A0S_032
HL_89380.2
HL_7KGB_0351/A/1455:1461No text annotation
Not in a motif group
homologous
HL_7A0S_033
HL_46680.1
HL_7KGB_0361/A/1494:1499Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_7KGB_0371/A/1520:1529No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_7KGB_0381/A/1598:1607No text annotation
Not in a motif group
HL_7KGB_0391/A/1688:1699No text annotation
Not in a motif group
HL_7KGB_0401/A/1729:1735No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_7KGB_0411/A/1770:1777No text annotation
Not in a motif group
HL_7KGB_0421/A/1802:1805No text annotation
Not in a motif group
homologous
HL_7A0S_039
HL_38927.2
HL_7KGB_0431/A/1847:1854No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_7KGB_0441/A/1865:1871GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.1
HL_7KGB_0451/A/1926:1931No text annotation
Not in a motif group
geometric
HL_7RQB_042
HL_03562.2
HL_7KGB_0461/A/1961:1967No text annotation
Not in a motif group
geometric
HL_5J7L_018
HL_34168.2
HL_7KGB_0471/A/1986:1990No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_7KGB_0481/A/2011:2021No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_7KGB_0491/A/2040:2045No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_42097.1
HL_7KGB_0501/A/2104:2109No text annotation
Not in a motif group
geometric
HL_4V88_198
HL_56691.2
HL_7KGB_0511/A/2148:2158No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_7KGB_0521/A/2187:2195No text annotation
Not in a motif group
homologous
HL_5J7L_182
HL_51824.1
HL_7KGB_0531/A/2265:2274No text annotation
Not in a motif group
HL_7KGB_0541/A/2375:2390No text annotation
Not in a motif group
HL_7KGB_0551/A/2446:2453No text annotation
Not in a motif group
HL_7KGB_0561/A/2486:2494No text annotation
Not in a motif group
homologous
HL_4WF9_049
HL_53171.2
HL_7KGB_0571/A/2502:2514No text annotation
Not in a motif group
homologous
HL_5J7L_187
HL_19870.6
HL_7KGB_0581/A/2541:2551No text annotation
Not in a motif group
homologous
HL_5J7L_188
HL_11805.3
HL_7KGB_0591/A/2562:2569No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.2
HL_7KGB_0601/A/2593:2600No text annotation
Not in a motif group
homologous
HL_4WF9_053
HL_09136.1
HL_7KGB_0611/A/2612:2617No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.1
HL_7KGB_0621/A/2642:2651No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_7KGB_0631/A/2709:2717No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_7KGB_0641/A/2766:2773No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_88526.2
HL_7KGB_0651/A/2789:2795No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_7KGB_0661/A/2832:2837No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_7KGB_0671/A/2896:2901GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_42097.1
HL_7KGB_0681/A/2939:2944Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_7KGB_0691/A/2983:2997No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_7KGB_0701/A/3032:3038Other HL
Not in a motif group
homologous
HL_5J7L_200
HL_34168.2
HL_7KGB_0711/A/3054:3062No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_7KGB_0721/A/3091:3096Other HL
Not in a motif group
homologous
HL_5J7L_202
HL_42097.1
HL_7KGB_0731/B/37:43No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.2
HL_7KGB_0741/B/83:88No text annotation
Not in a motif group
geometric
HL_6SVS_001
HL_87030.2
HL_7KGB_0751/a/15:25No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_7KGB_0761/a/81:86No text annotation
Not in a motif group
HL_7KGB_0771/a/154:159GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_7KGB_0781/a/189:194No text annotation
Not in a motif group
HL_7KGB_0791/a/210:217UNCG
Not in a motif group
geometric
HL_1KUQ_001
HL_03562.2
HL_7KGB_0801/a/258:266No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_7KGB_0811/a/295:300GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.1
HL_7KGB_0821/a/319:332No text annotation
Not in a motif group
HL_7KGB_0831/a/341:346UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_7KGB_0841/a/378:383GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.1
HL_7KGB_0851/a/418:423UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_7KGB_0861/a/458:464No text annotation
Not in a motif group
geometric
HL_4YAZ_004
HL_56691.2
HL_7KGB_0871/a/512:519No text annotation
Not in a motif group
geometric
HL_2Y9H_003
HL_16173.1
HL_7KGB_0881/a/608:614No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.1
HL_7KGB_0891/a/680:689No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_7KGB_0901/a/717:722Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_7KGB_0911/a/777:787No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_7KGB_0921/a/832:839No text annotation
Not in a motif group
HL_7KGB_0931/a/855:860GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_7KGB_0941/a/890:895GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_7KGB_0951/a/956:965No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_7KGB_0961/a/1005:1010Other HL
Not in a motif group
geometric
HL_5TBW_048
HL_42097.1
HL_7KGB_0971/a/1019:1026No text annotation
Not in a motif group
HL_7KGB_0981/a/1067:1072GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_42097.1
HL_7KGB_0991/a/1080:1087No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_7KGB_1001/a/1124:1133No text annotation
Not in a motif group
HL_7KGB_1011/a/1157:1163GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_7KGB_1021/a/1257:1262GNRA
Not in a motif group
homologous
HL_5J7L_027
HL_42097.1
HL_7KGB_1031/a/1306:1315No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_7KGB_1041/a/1348:1359No text annotation
Not in a motif group
homologous
HL_5J7L_029
HL_96366.1
HL_7KGB_1051/a/1442:1447UNCG
Not in a motif group
homologous
HL_4LFB_031
HL_03562.2
HL_7KGB_1061/a/1508:1513No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_7KGB_1071/y/13:23No text annotation
Not in a motif group
homologous
HL_1QF6_001
NA
HL_7KGB_1081/y/32:40tRNA anticodon loop
Not in a motif group
homologous
HL_4TUE_034
HL_53597.2
HL_7KGB_1091/y/54:62T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5WT1_003
HL_71309.1

Problematic loops

#loop idProblemSequence
HL_7KGB_027No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7KGB_0011/A/24:30,
1/A/598:604
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_4WF9_001
IL_66414.6
IL_7KGB_0021/A/36:37,
1/A/531:533
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.2
IL_7KGB_0031/A/43:44,
1/A/523:525
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_7KGB_0041/A/56:76,
1/A/110:114
No text annotation
Not in a motif group
geometric
IL_5TBW_144
IL_44998.1
IL_7KGB_0051/A/81:85,
1/A/98:105
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_7KGB_0061/A/185:186,
1/A/214:216
Single stack bend
Not in a motif group
homologous
IL_4WF9_007
IL_76488.2
IL_7KGB_0071/A/190:196,
1/A/203:210
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_250
IL_04346.7
IL_7KGB_0081/A/241:247,
1/A/255:260
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_7KGB_0091/A/283:292,
1/A/299:305
No text annotation
Not in a motif group
IL_7KGB_0101/A/323:325,
1/A/451:455
8-nt loop receptor
Not in a motif group
geometric
IL_6DME_002
IL_93341.1
IL_7KGB_0111/A/357:365,
1/A/439:440
No text annotation
Not in a motif group
IL_7KGB_0121/A/370:372,
1/A/433:434
Single bulged U
Not in a motif group
geometric
IL_3TZR_002
IL_83039.13
IL_7KGB_0131/A/375:377,
1/A/426:430
No text annotation
Not in a motif group
homologous
IL_4WF9_014
IL_69440.1
IL_7KGB_0141/A/383:385,
1/A/398:399
Single bulged U
Not in a motif group
geometric
IL_3TZR_002
IL_83039.13
IL_7KGB_0151/A/570:573,
1/A/584:597
No text annotation
Not in a motif group
homologous
IL_4WF9_015
IL_60992.6
IL_7KGB_0161/A/624:627,
1/A/656:659
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.9
IL_7KGB_0171/A/629:631,
1/A/652:654
No text annotation
Not in a motif group
geometric
IL_2O3Y_004
IL_95997.1
IL_7KGB_0181/A/635:637,
1/A/645:648
Minor groove platform with extra cWW
Not in a motif group
geometric
IL_4V88_411
IL_46796.1
IL_7KGB_0191/A/666:668,
1/A/677:679
No text annotation
Not in a motif group
homologous
IL_4WF9_017
IL_95997.1
IL_7KGB_0201/A/693:695,
1/A/794:795
Single bulged A
Not in a motif group
homologous
IL_7A0S_012
IL_37497.2
IL_7KGB_0211/A/709:713,
1/A/722:726
AAA cross-strand stack
Not in a motif group
homologous
IL_7A0S_013
IL_17136.1
IL_7KGB_0221/A/801:803,
1/A/935:937
No text annotation
Not in a motif group
homologous
IL_4WF9_020
IL_95997.1
IL_7KGB_0231/A/803:807,
1/A/928:935
No text annotation
Not in a motif group
geometric
IL_7RQB_018
IL_17470.6
IL_7KGB_0241/A/826:827,
1/A/892:894
Single bulged A
Not in a motif group
geometric
IL_5J7L_261
IL_37497.2
IL_7KGB_0251/A/831:832,
1/A/857:859
Single bulged G
Not in a motif group
homologous
IL_5J7L_262
IL_00225.2
IL_7KGB_0261/A/832:836,
1/A/853:857
Triple sheared
Not in a motif group
geometric
IL_7RQB_021
IL_56467.8
IL_7KGB_0271/A/867:869,
1/A/886:887
Major groove platform
Not in a motif group
homologous
IL_4WF9_026
IL_27635.1
IL_7KGB_0281/A/904:906,
1/A/916:920
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_265
IL_90991.6
IL_7KGB_0291/A/966:967,
1/A/1068:1070
Single stack bend
Not in a motif group
homologous
IL_7A0S_022
IL_92001.1
IL_7KGB_0301/A/973:978,
1/A/1057:1062
No text annotation
Not in a motif group
IL_7KGB_0311/A/985:991,
1/A/1044:1050
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_5J7L_270
IL_93830.3
IL_7KGB_0321/A/991:992,
1/A/1042:1044
Minor groove platform
Not in a motif group
homologous
IL_7RQB_028
IL_42622.2
IL_7KGB_0331/A/993:998,
1/A/1038:1041
C-loop
Not in a motif group
homologous
IL_4WF9_033
IL_02509.1
IL_7KGB_0341/A/1000:1002,
1/A/1034:1036
Isolated cWS basepair
Not in a motif group
homologous
IL_4WF9_034
IL_52767.2
IL_7KGB_0351/A/1005:1010,
1/A/1026:1031
No text annotation
Not in a motif group
geometric
IL_5TBW_026
IL_19954.2
IL_7KGB_0361/A/1077:1078,
1/A/1095:1097
Single bulged A
Not in a motif group
geometric
IL_7RQB_101
IL_37497.2
IL_7KGB_0371/A/1123:1125,
1/A/1289:1290
Single bulged C
Not in a motif group
homologous
IL_5J7L_276
IL_61258.12
IL_7KGB_0381/A/1127:1131,
1/A/1283:1287
UAA/GAN
Not in a motif group
homologous
IL_4WF9_036
IL_89002.2
IL_7KGB_0391/A/1133:1140,
1/A/1280:1281
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_7RQB_037
IL_15861.7
IL_7KGB_0401/A/1140:1142,
1/A/1279:1280
Single bulged U
Not in a motif group
homologous
IL_4WF9_038
IL_83039.13
IL_7KGB_0411/A/1147:1153,
1/A/1269:1274
No text annotation
Not in a motif group
geometric
IL_5J7L_280
IL_57188.3
IL_7KGB_0421/A/1153:1159,
1/A/1253:1269
No text annotation
Not in a motif group
geometric
IL_4WF9_040
IL_50715.1
IL_7KGB_0431/A/1160:1163,
1/A/1250:1252
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7A0S_038
IL_82068.2
IL_7KGB_0441/A/1171:1182,
1/A/1235:1242
No text annotation
Not in a motif group
IL_7KGB_0451/A/1188:1192,
1/A/1204:1208
No text annotation
Not in a motif group
IL_7KGB_0461/A/1328:1330,
1/A/1378:1381
Isolated cWS basepair
Not in a motif group
homologous
IL_4WF9_044
IL_52767.2
IL_7KGB_0471/A/1339:1346,
1/A/1365:1369
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_7KGB_0481/A/1393:1400,
1/A/2249:2255
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_049
IL_04346.7
IL_7KGB_0491/A/1450:1454,
1/A/1462:1464
No text annotation
Not in a motif group
IL_7KGB_0501/A/1482:1486,
1/A/1507:1511
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_7KGB_0511/A/1488:1492,
1/A/1501:1505
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_7KGB_0521/A/1544:1546,
1/A/1822:1824
No text annotation
Not in a motif group
geometric
IL_3D0U_006
IL_95997.1
IL_7KGB_0531/A/1556:1561,
1/A/1642:1649
No text annotation
Not in a motif group
IL_7KGB_0541/A/1566:1568,
1/A/1636:1637
No text annotation
Not in a motif group
IL_7KGB_0551/A/1568:1573,
1/A/1631:1636
No text annotation
Not in a motif group
geometric
IL_6N5P_001
IL_55953.3
IL_7KGB_0561/A/1576:1578,
1/A/1626:1628
No text annotation
Not in a motif group
geometric
IL_3GM7_004
IL_95997.1
IL_7KGB_0571/A/1579:1583,
1/A/1621:1625
No text annotation
Not in a motif group
IL_7KGB_0581/A/1587:1589,
1/A/1615:1617
No text annotation
Not in a motif group
geometric
IL_3BNT_001
IL_95997.1
IL_7KGB_0591/A/1589:1592,
1/A/1613:1615
No text annotation
Not in a motif group
IL_7KGB_0601/A/1595:1597,
1/A/1608:1610
Not an internal loop
Not in a motif group
geometric
IL_5VCI_005
IL_82842.2
IL_7KGB_0611/A/1655:1659,
1/A/1814:1817
No text annotation
Not in a motif group
IL_7KGB_0621/A/1670:1673,
1/A/1794:1798
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_7KGB_0631/A/1675:1678,
1/A/1788:1792
tSH-tHW
Not in a motif group
homologous
IL_7RQB_057
IL_04059.1
IL_7KGB_0641/A/1706:1709,
1/A/1759:1763
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_7KGB_0651/A/1711:1716,
1/A/1752:1757
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_7A0S_027
IL_81631.1
IL_7KGB_0661/A/1719:1720,
1/A/1743:1749
No text annotation
Not in a motif group
homologous
IL_7RQB_061
IL_52493.1
IL_7KGB_0671/A/1726:1728,
1/A/1736:1737
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.2
IL_7KGB_0681/A/1886:1891,
1/A/2242:2244
No text annotation
Not in a motif group
IL_7KGB_0691/A/1898:1900,
1/A/2233:2235
Isolated tWW turn
Not in a motif group
homologous
IL_7A0S_060
IL_54997.7
IL_7KGB_0701/A/1901:1904,
1/A/2231:2232
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_5J7L_306
IL_50694.2
IL_7KGB_0711/A/1904:1909,
1/A/2228:2231
Intercalated tWH
Not in a motif group
homologous
IL_4WF9_065
IL_82842.2
IL_7KGB_0721/A/1921:1926,
1/A/1931:1937
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_7RQB_068
IL_65969.2
IL_7KGB_0731/A/1947:1952,
1/A/1977:1980
tWW and near cWH
Not in a motif group
geometric
IL_6DLR_005
IL_55178.1
IL_7KGB_0741/A/2004:2005,
1/A/2218:2220
Single bulged A
Not in a motif group
homologous
IL_7RQB_069
IL_37497.2
IL_7KGB_0751/A/2032:2038,
1/A/2047:2055
Kink-turn related
Not in a motif group
homologous
IL_7RQB_070
IL_17069.3
IL_7KGB_0761/A/2071:2074,
1/A/2140:2141
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_7KGB_0771/A/2075:2076,
1/A/2136:2139
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_7KGB_0781/A/2080:2083,
1/A/2131:2132
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.6
IL_7KGB_0791/A/2085:2089,
1/A/2125:2129
UAA/GAN with extra pair
Not in a motif group
homologous
IL_7RQB_074
IL_90318.1
IL_7KGB_0801/A/2090:2095,
1/A/2119:2124
No text annotation
Not in a motif group
IL_7KGB_0811/A/2098:2101,
1/A/2112:2116
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.1
IL_7KGB_0821/A/2171:2172,
1/A/2202:2205
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_318
IL_59677.2
IL_7KGB_0831/A/2172:2183,
1/A/2199:2202
No text annotation
Not in a motif group
geometric
IL_7A0S_072
IL_81589.2
IL_7KGB_0841/A/2288:2290,
1/A/2855:2856
Major groove platform
Not in a motif group
homologous
IL_7RQB_078
IL_27635.1
IL_7KGB_0851/A/2292:2294,
1/A/2850:2853
No text annotation
Not in a motif group
homologous
IL_4WF9_079
IL_54678.5
IL_7KGB_0861/A/2307:2308,
1/A/2676:2679
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.2
IL_7KGB_0871/A/2318:2321,
1/A/2473:2477
No text annotation
Not in a motif group
IL_7KGB_0881/A/2322:2324,
1/A/2470:2472
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_95997.1
IL_7KGB_0891/A/2439:2441,
1/A/2458:2459
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.13
IL_7KGB_0901/A/2535:2537,
1/A/2555:2559
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_088
IL_38958.7
IL_7KGB_0911/A/2588:2591,
1/A/2602:2605
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.9
IL_7KGB_0921/A/2639:2641,
1/A/2652:2653
Major groove platform
Not in a motif group
homologous
IL_7RQB_090
IL_27635.1
IL_7KGB_0931/A/2691:2693,
1/A/2734:2738
No text annotation
Not in a motif group
homologous
IL_5J7L_335
NA
IL_7KGB_0941/A/2695:2697,
1/A/2731:2732
Major groove platform
Not in a motif group
homologous
IL_7A0S_085
IL_27635.1
IL_7KGB_0951/A/2697:2699,
1/A/2727:2731
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_7RQB_094
IL_92788.2
IL_7KGB_0961/A/2699:2701,
1/A/2725:2727
No text annotation
Not in a motif group
geometric
IL_3BNR_012
IL_95997.1
IL_7KGB_0971/A/2704:2708,
1/A/2718:2722
Triple sheared
Not in a motif group
homologous
IL_4WF9_093
IL_56467.8
IL_7KGB_0981/A/2745:2746,
1/A/2818:2820
Major groove platform
Not in a motif group
homologous
IL_7RQB_096
IL_76223.2
IL_7KGB_0991/A/2748:2750,
1/A/2812:2816
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_097
IL_90933.2
IL_7KGB_1001/A/2750:2751,
1/A/2809:2812
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_7KGB_1011/A/2760:2761,
1/A/2778:2781
Minor groove platform with intercalation
Not in a motif group
homologous
IL_7A0S_091
IL_95601.3
IL_7KGB_1021/A/2829:2830,
1/A/2839:2841
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.2
IL_7KGB_1031/A/2874:2878,
1/A/3012:3020
tSH-tHS-tHW
Not in a motif group
homologous
IL_7RQB_102
IL_04638.1
IL_7KGB_1041/A/2890:2896,
1/A/2901:2906
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_7A0S_094
IL_16458.1
IL_7KGB_1051/A/2918:2922,
1/A/2963:2965
C-loop
Not in a motif group
homologous
IL_7RQB_104
IL_63596.6
IL_7KGB_1061/A/2925:2929,
1/A/2956:2960
No text annotation
Not in a motif group
homologous
IL_4WF9_102
IL_08296.3
IL_7KGB_1071/A/2933:2934,
1/A/2949:2952
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_7KGB_1081/A/2975:2980,
1/A/3000:3005
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_7KGB_1091/A/3073:3074,
1/A/3113:3115
Single bulged G
Not in a motif group
homologous
IL_7A0S_099
IL_00225.2
IL_7KGB_1101/A/3078:3080,
1/A/3106:3109
Decoding loop related
Not in a motif group
homologous
IL_7A0S_100
IL_02284.5
IL_7KGB_1111/A/3082:3087,
1/A/3100:3104
No text annotation
Not in a motif group
homologous
IL_4WF9_108
IL_83162.5
IL_7KGB_1121/B/2:4,
1/B/111:113
No text annotation
Not in a motif group
geometric
IL_6OL3_002
IL_95997.1
IL_7KGB_1131/B/16:17,
1/B/64:66
Major groove intercalation
Not in a motif group
homologous
IL_4WF9_112
IL_37497.2
IL_7KGB_1141/B/22:28,
1/B/54:59
No text annotation
Not in a motif group
IL_7KGB_1151/B/29:30,
1/B/50:53
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_357
IL_09061.6
IL_7KGB_1161/B/33:37,
1/B/43:47
Symmetric double minor groove platform
Not in a motif group
homologous
IL_4V9F_104
IL_58103.6
IL_7KGB_1171/B/70:78,
1/B/93:101
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7RQB_115
IL_56455.3
IL_7KGB_1181/a/33:35,
1/a/543:544
Single bulged G
Not in a motif group
homologous
IL_5J7L_001
IL_00225.2
IL_7KGB_1191/a/47:48,
1/a/395:397
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.2
IL_7KGB_1201/a/50:55,
1/a/358:360
No text annotation
Not in a motif group
homologous
IL_5J7L_003
IL_11178.1
IL_7KGB_1211/a/57:59,
1/a/355:356
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_7KGB_1221/a/66:69,
1/a/98:99
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_7KGB_1231/a/70:72,
1/a/94:97
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_7KGB_1241/a/73:76,
1/a/92:93
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_7KGB_1251/a/76:81,
1/a/86:92
No text annotation
Not in a motif group
IL_7KGB_1261/a/124:127,
1/a/230:231
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_7KGB_1271/a/128:132,
1/a/226:229
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_7KGB_1281/a/143:149,
1/a/164:171
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_7KGB_1291/a/241:246,
1/a/276:283
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_7KGB_1301/a/248:251,
1/a/273:274
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_7KGB_1311/a/291:292,
1/a/303:307
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_7KGB_1321/a/366:368,
1/a/391:392
Single bulged U
Not in a motif group
homologous
IL_5J7L_017
IL_83039.13
IL_7KGB_1331/a/370:374,
1/a/388:389
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_7KGB_1341/a/374:375,
1/a/386:388
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.2
IL_7KGB_1351/a/408:415,
1/a/426:432
No text annotation
Not in a motif group
IL_7KGB_1361/a/439:441,
1/a/483:488
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_7KGB_1371/a/445:449,
1/a/474:479
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_4LFB_018
IL_88269.3
IL_7KGB_1381/a/449:452,
1/a/471:474
No text annotation
Not in a motif group
IL_7KGB_1391/a/456:458,
1/a/464:467
No text annotation
Not in a motif group
geometric
IL_4N0T_004
IL_46796.1
IL_7KGB_1401/a/495:502,
1/a/531:532
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_7KGB_1411/a/506:512,
1/a/519:527
No text annotation
Not in a motif group
homologous
IL_4LFB_021
NA
IL_7KGB_1421/a/560:566,
1/a/873:874
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_7KGB_1431/a/571:575,
1/a/748:752
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_7KGB_1441/a/585:587,
1/a/635:636
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.1
IL_7KGB_1451/a/588:589,
1/a/631:634
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.6
IL_7KGB_1461/a/596:602,
1/a/620:624
No text annotation
Not in a motif group
IL_7KGB_1471/a/645:646,
1/a/742:745
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4LFB_027
IL_50694.2
IL_7KGB_1481/a/648:649,
1/a/738:740
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.1
IL_7KGB_1491/a/653:657,
1/a/731:734
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_7KGB_1501/a/664:669,
1/a/703:708
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_04668.1
IL_7KGB_1511/a/675:679,
1/a/690:697
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_7KGB_1521/a/765:769,
1/a/795:796
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_7KGB_1531/a/770:774,
1/a/790:794
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_033
IL_17136.1
IL_7KGB_1541/a/829:831,
1/a/840:841
Single stack bend
Not in a motif group
geometric
IL_5J7L_269
IL_76488.2
IL_7KGB_1551/a/880:887,
1/a/898:903
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_7KGB_1561/a/915:916,
1/a/1386:1388
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.2
IL_7KGB_1571/a/918:920,
1/a/1383:1384
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.2
IL_7KGB_1581/a/926:928,
1/a/1373:1377
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_7KGB_1591/a/946:947,
1/a/1218:1220
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_7KGB_1601/a/986:990,
1/a/1035:1036
Minor groove platform
Not in a motif group
homologous
IL_4LFB_039
IL_47078.1
IL_7KGB_1611/a/993:996,
1/a/1028:1032
No text annotation
Not in a motif group
IL_7KGB_1621/a/1001:1003,
1/a/1012:1014
No text annotation
Not in a motif group
geometric
IL_1RPU_001
IL_95997.1
IL_7KGB_1631/a/1003:1005,
1/a/1010:1012
No text annotation
Not in a motif group
geometric
IL_4JGN_004
IL_95997.1
IL_7KGB_1641/a/1039:1041,
1/a/1200:1201
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.13
IL_7KGB_1651/a/1043:1047,
1/a/1196:1198
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_7KGB_1661/a/1048:1049,
1/a/1191:1195
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_7KGB_1671/a/1051:1052,
1/a/1187:1189
Single bulged A
Not in a motif group
homologous
IL_5J7L_049
IL_37497.2
IL_7KGB_1681/a/1052:1054,
1/a/1185:1187
No text annotation
Not in a motif group
geometric
IL_5J7L_050
IL_95997.1
IL_7KGB_1691/a/1115:1119,
1/a/1136:1141
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_7KGB_1701/a/1120:1123,
1/a/1134:1135
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_7KGB_1711/a/1150:1153,
1/a/1167:1173
No text annotation
Not in a motif group
homologous
IL_5J7L_053
IL_42032.1
IL_7KGB_1721/a/1239:1245,
1/a/1276:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_051
IL_09129.1
IL_7KGB_1731/a/1247:1250,
1/a/1269:1274
No text annotation
Not in a motif group
homologous
IL_5J7L_055
IL_75461.4
IL_7KGB_1741/a/1251:1255,
1/a/1264:1268
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_7KGB_1751/a/1295:1300,
1/a/1321:1326
No text annotation
Not in a motif group
homologous
IL_4LFB_055
IL_19954.2
IL_7KGB_1761/a/1392:1394,
1/a/1494:1497
No text annotation
Not in a motif group
homologous
IL_5J7L_058
IL_36143.3
IL_7KGB_1771/a/1394:1397,
1/a/1490:1494
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_7KGB_1781/a/1398:1400,
1/a/1487:1489
No text annotation
Not in a motif group
geometric
IL_5MWI_004
IL_95997.1
IL_7KGB_1791/a/1400:1402,
1/a/1484:1487
Decoding loop related
Not in a motif group
geometric
IL_3C3Z_002
IL_64417.1
IL_7KGB_1801/a/1405:1407,
1/a/1479:1481
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_7KGB_1811/a/1409:1412,
1/a/1474:1477
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_7KGB_1821/a/1417:1420,
1/a/1466:1469
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5TBW_100
IL_30621.2
IL_7KGB_1831/a/1423:1428,
1/a/1459:1463
Triple sheared related
Not in a motif group
geometric
IL_4V9F_018
IL_64879.2
IL_7KGB_1841/a/1428:1430,
1/a/1457:1459
No text annotation
Not in a motif group
geometric
IL_4LFB_063
IL_95997.1
IL_7KGB_1851/a/1433:1436,
1/a/1452:1454
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_7RQB_012
IL_38958.7
IL_7KGB_1861/a/1438:1441,
1/a/1448:1450
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7KGB_0011/A/30:31,
1/A/563:570,
1/A/597:598
No text annotation
Not in a motif group
J3_7KGB_0021/A/318:320,
1/A/458:464,
1/A/488:493
No text annotation
Not in a motif group
J3_7KGB_0031/A/812:818,
1/A/902:904,
1/A/920:923
No text annotation
Not in a motif group
homologous
J3_5J7L_038
NA
J3_7KGB_0041/A/827:829,
1/A/861:865,
1/A/889:892
No text annotation
Not in a motif group
homologous
J3_7RQB_005
NA
J3_7KGB_0051/A/1184:1187,
1/A/1209:1216,
1/A/1231:1233
No text annotation
Not in a motif group
J3_7KGB_0061/A/1429:1434,
1/A/1860:1862,
1/A/1874:1877
No text annotation
Not in a motif group
homologous
J3_5J7L_041
NA
J3_7KGB_0071/A/1437:1440,
1/A/1840:1846,
1/A/1855:1857
No text annotation
Not in a motif group
homologous
J3_7A0S_007
NA
J3_7KGB_0081/A/1475:1481,
1/A/1512:1516,
1/A/1533:1534
No text annotation
Not in a motif group
homologous
J3_7RQB_009
NA
J3_7KGB_0091/A/1547:1554,
1/A/1651:1654,
1/A/1818:1821
No text annotation
Not in a motif group
J3_7KGB_0101/A/1663:1667,
1/A/1801:1802,
1/A/1805:1810
No text annotation
Not in a motif group
J3_7KGB_0111/A/2328:2330,
1/A/2433:2437,
1/A/2461:2466
No text annotation
Not in a motif group
homologous
J3_5J7L_044
NA
J3_7KGB_0121/A/2533:2535,
1/A/2559:2561,
1/A/2570:2575
No text annotation
Not in a motif group
J3_7KGB_0131/A/2755:2758,
1/A/2783:2785,
1/A/2799:2805
No text annotation
Not in a motif group
homologous
J3_7RQB_012
NA
J3_7KGB_0141/A/3049:3051,
1/A/3065:3071,
1/A/3117:3121
No text annotation
Not in a motif group
J3_7KGB_0151/B/9:15,
1/B/67:69,
1/B/102:106
No text annotation
Not in a motif group
homologous
J3_5J7L_049
NA
J3_7KGB_0161/a/49:50,
1/a/360:366,
1/a/392:394
No text annotation
Not in a motif group
J3_7KGB_0171/a/577:579,
1/a/642:645,
1/a/745:746
No text annotation
Not in a motif group
homologous
J3_5J7L_002
NA
J3_7KGB_0181/a/663:664,
1/a/708:716,
1/a/723:725
No text annotation
Not in a motif group
J3_7KGB_0191/a/817:820,
1/a/850:854,
1/a/861:867
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_7KGB_0201/a/929:932,
1/a/1336:1342,
1/a/1365:1372
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_7KGB_0211/a/936:939,
1/a/1227:1229,
1/a/1329:1332
No text annotation
Not in a motif group
J3_7KGB_0221/a/948:955,
1/a/966:977,
1/a/1213:1217
No text annotation
Not in a motif group
J3_7KGB_0231/a/983:986,
1/a/1036:1038,
1/a/1202:1207
No text annotation
Not in a motif group
J3_7KGB_0241/a/996:999,
1/a/1016:1019,
1/a/1026:1028
No text annotation
Not in a motif group
J3_7KGB_0251/a/1054:1059,
1/a/1098:1104,
1/a/1179:1185
No text annotation
Not in a motif group
J3_7KGB_0261/a/1064:1065,
1/a/1074:1078,
1/a/1089:1093
No text annotation
Not in a motif group
homologous
J3_5J7L_009
NA
J3_7KGB_0271/a/1107:1109,
1/a/1147:1150,
1/a/1173:1176
No text annotation
Not in a motif group
J3_7KGB_0281/a/1229:1233,
1/a/1288:1295,
1/a/1326:1329
No text annotation
Not in a motif group

Problematic loops

No problematic loops


Coloring options:
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