7TOO Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7TOO_001 | 1/A25S/38:45 | No text annotation Not in a motif group | homologous HL_8C3A_001 HL_06192.2 | |
| HL_7TOO_002 | 1/A25S/69:74 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_7TOO_003 | 1/A25S/90:96 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_7TOO_004 | 1/A25S/132:136 | No text annotation Not in a motif group | homologous HL_8C3A_004 HL_98426.1 | |
| HL_7TOO_005 | 1/A25S/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_7TOO_006 | 1/A25S/208:212 | No text annotation Not in a motif group | homologous HL_8C3A_006 HL_98984.2 | |
| HL_7TOO_007 | 1/A25S/216:224 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.8 | |
| HL_7TOO_008 | 1/A25S/278:287 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
| HL_7TOO_009 | 1/A25S/303:312 | No text annotation Not in a motif group | homologous HL_8C3A_009 HL_12078.2 | |
| HL_7TOO_010 | 1/A25S/357:362 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.1 | |
| HL_7TOO_011 | 1/A25S/382:387 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_42097.1 | |
| HL_7TOO_012 | 1/A25S/541:550 | No text annotation Not in a motif group | ||
| HL_7TOO_013 | 1/A25S/599:604 | No text annotation Not in a motif group | homologous HL_8C3A_013 HL_56691.2 | |
| HL_7TOO_014 | 1/A25S/640:649 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_89380.2 | |
| HL_7TOO_015 | 1/A25S/686:694 | No text annotation Not in a motif group | homologous HL_8C3A_015 HL_03345.1 | |
| HL_7TOO_016 | 1/A25S/707:712 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_7TOO_017 | 1/A25S/732:737 | GNRA Not in a motif group | geometric HL_5TBW_017 HL_42097.1 | |
| HL_7TOO_018 | 1/A25S/763:768 | No text annotation Not in a motif group | homologous HL_8C3A_018 HL_34168.2 | |
| HL_7TOO_019 | 1/A25S/844:849 | No text annotation Not in a motif group | homologous HL_8C3A_019 HL_42097.1 | |
| HL_7TOO_020 | 1/A25S/876:885 | No text annotation Not in a motif group | homologous HL_8C3A_020 HL_39334.6 | |
| HL_7TOO_021 | 1/A25S/910:918 | No text annotation Not in a motif group | homologous HL_8C3A_021 HL_33817.1 | |
| HL_7TOO_022 | 1/A25S/958:963 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_7TOO_024 | 1/A25S/1076:1083 | No text annotation Not in a motif group | homologous HL_8C3A_024 HL_71554.2 | |
| HL_7TOO_025 | 1/A25S/1126:1132 | No text annotation Not in a motif group | homologous HL_8C3A_025 HL_42097.1 | |
| HL_7TOO_026 | 1/A25S/1148:1155 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.2 | |
| HL_7TOO_027 | 1/A25S/1239:1249 | No text annotation Not in a motif group | homologous HL_8C3A_027 HL_07145.1 | |
| HL_7TOO_028 | 1/A25S/1267:1274 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_7TOO_029 | 1/A25S/1347:1357 | No text annotation Not in a motif group | geometric HL_5TBW_029 HL_89098.1 | |
| HL_7TOO_030 | 1/A25S/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_7TOO_031 | 1/A25S/1462:1470 | No text annotation Not in a motif group | homologous HL_8C3A_031 HL_89380.2 | |
| HL_7TOO_032 | 1/A25S/1506:1512 | No text annotation Not in a motif group | homologous HL_8C3A_032 HL_46680.1 | |
| HL_7TOO_033 | 1/A25S/1544:1549 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_76539.2 | |
| HL_7TOO_034 | 1/A25S/1566:1572 | No text annotation Not in a motif group | ||
| HL_7TOO_035 | 1/A25S/1599:1608 | No text annotation Not in a motif group | homologous HL_8C3A_035 HL_69023.2 | |
| HL_7TOO_036 | 1/A25S/1634:1639 | No text annotation Not in a motif group | homologous HL_8C3A_036 HL_42097.1 | |
| HL_7TOO_037 | 1/A25S/1680:1688 | No text annotation Not in a motif group | homologous HL_8C3A_037 HL_60812.1 | |
| HL_7TOO_038 | 1/A25S/1719:1725 | No text annotation Not in a motif group | homologous HL_8C3A_038 HL_86373.2 | |
| HL_7TOO_039 | 1/A25S/1759:1766 | No text annotation Not in a motif group | ||
| HL_7TOO_040 | 1/A25S/1792:1796 | No text annotation Not in a motif group | homologous HL_8C3A_040 HL_49678.1 | |
| HL_7TOO_041 | 1/A25S/1844:1851 | No text annotation Not in a motif group | homologous HL_8C3A_041 HL_64430.2 | |
| HL_7TOO_042 | 1/A25S/1862:1868 | No text annotation Not in a motif group | homologous HL_8C3A_042 HL_42097.1 | |
| HL_7TOO_043 | 1/A25S/1923:1928 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_7TOO_045 | 1/A25S/2110:2114 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_20062.1 | |
| HL_7TOO_046 | 1/A25S/2135:2145 | No text annotation Not in a motif group | homologous HL_8C3A_046 HL_43613.5 | |
| HL_7TOO_047 | 1/A25S/2164:2170 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.1 | |
| HL_7TOO_048 | 1/A25S/2220:2225 | No text annotation Not in a motif group | homologous HL_8C3A_048 HL_42097.1 | |
| HL_7TOO_049 | 1/A25S/2253:2263 | No text annotation Not in a motif group | homologous HL_8C3A_049 HL_71924.2 | |
| HL_7TOO_050 | 1/A25S/2292:2300 | No text annotation Not in a motif group | homologous HL_8C3A_050 HL_51824.1 | |
| HL_7TOO_051 | 1/A25S/2369:2378 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.6 | |
| HL_7TOO_052 | 1/A25S/2465:2490 | No text annotation Not in a motif group | ||
| HL_7TOO_053 | 1/A25S/2535:2544 | No text annotation Not in a motif group | ||
| HL_7TOO_054 | 1/A25S/2568:2573 | No text annotation Not in a motif group | ||
| HL_7TOO_055 | 1/A25S/2616:2624 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.2 | |
| HL_7TOO_056 | 1/A25S/2633:2645 | No text annotation Not in a motif group | homologous HL_8C3A_056 HL_19870.6 | |
| HL_7TOO_057 | 1/A25S/2673:2681 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_7TOO_058 | 1/A25S/2693:2700 | No text annotation Not in a motif group | homologous HL_8C3A_058 HL_12078.2 | |
| HL_7TOO_059 | 1/A25S/2724:2732 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_7TOO_060 | 1/A25S/2744:2749 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_42097.1 | |
| HL_7TOO_061 | 1/A25S/2776:2784 | No text annotation Not in a motif group | homologous HL_8C3A_061 HL_96598.1 | |
| HL_7TOO_062 | 1/A25S/2840:2848 | No text annotation Not in a motif group | homologous HL_8C3A_062 HL_06192.2 | |
| HL_7TOO_063 | 1/A25S/2897:2904 | No text annotation Not in a motif group | homologous HL_8C3A_063 HL_88526.2 | |
| HL_7TOO_064 | 1/A25S/2920:2926 | No text annotation Not in a motif group | geometric HL_4WF9_058 HL_43656.2 | |
| HL_7TOO_065 | 1/A25S/2963:2968 | No text annotation Not in a motif group | homologous HL_8C3A_065 HL_42097.1 | |
| HL_7TOO_066 | 1/A25S/3025:3030 | No text annotation Not in a motif group | homologous HL_8C3A_066 HL_42097.1 | |
| HL_7TOO_067 | 1/A25S/3068:3073 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_7TOO_068 | 1/A25S/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_7TOO_069 | 1/A25S/3194:3197 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_98426.1 | |
| HL_7TOO_070 | 1/A25S/3240:3247 | No text annotation Not in a motif group | geometric HL_5TBW_069 HL_14449.2 | |
| HL_7TOO_071 | 1/A25S/3303:3311 | No text annotation Not in a motif group | geometric HL_5TBW_070 HL_27930.1 | |
| HL_7TOO_072 | 1/A25S/3350:3353 | No text annotation Not in a motif group | homologous HL_8C3A_072 HL_53837.1 | |
| HL_7TOO_073 | 1/A58S/69:89 | No text annotation Not in a motif group | ||
| HL_7TOO_074 | 1/A58S/108:114 | No text annotation Not in a motif group | geometric HL_5TBW_075 HL_87939.1 | |
| HL_7TOO_075 | 1/A58S/124:129 | No text annotation Not in a motif group | geometric HL_5TBW_076 HL_96851.2 | |
| HL_7TOO_076 | 1/A5S/36:41 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_87939.1 | |
| HL_7TOO_077 | 1/A5S/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_7TOO_078 | 1/APTN/13:22 | No text annotation Not in a motif group | geometric HL_1J1U_001 HL_25462.2 | |
| HL_7TOO_079 | 1/APTN/31:39 | tRNA anticodon loop Not in a motif group | geometric HL_6UFG_007 HL_53597.2 | |
| HL_7TOO_080 | 1/APTN/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5AXM_003 HL_22280.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7TOO_023 | No text annotation | ||
| HL_7TOO_044 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7TOO_001 | 1/A25S/3:4, 1/A58S/155:156 | No text annotation Not in a motif group | ||
| IL_7TOO_002 | 1/A25S/7:8, 1/A58S/150:152 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_7TOO_003 | 1/A25S/13:15, 1/A58S/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_7TOO_004 | 1/A25S/27:28, 1/A25S/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_7TOO_005 | 1/A25S/31:38, 1/A25S/45:53 | No text annotation Not in a motif group | homologous IL_8C3A_005 IL_35728.2 | |
| IL_7TOO_006 | 1/A25S/82:89, 1/A25S/97:103 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_7TOO_007 | 1/A25S/123:124, 1/A25S/144:149 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
| IL_7TOO_008 | 1/A25S/125:127, 1/A25S/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_7TOO_009 | 1/A25S/163:166, 1/A25S/256:258 | Other IL Not in a motif group | geometric IL_5TBW_064 IL_84698.1 | |
| IL_7TOO_010 | 1/A25S/169:170, 1/A25S/248:253 | No text annotation Not in a motif group | geometric IL_5TBW_010 IL_74684.1 | |
| IL_7TOO_011 | 1/A25S/177:179, 1/A25S/237:241 | Major groove platform with extra pair Not in a motif group | geometric IL_5TBW_011 IL_63450.2 | |
| IL_7TOO_012 | 1/A25S/189:191, 1/A25S/204:205 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_7TOO_013 | 1/A25S/337:339, 1/A58S/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.2 | |
| IL_7TOO_014 | 1/A25S/376:379, 1/A25S/390:403 | No text annotation Not in a motif group | geometric IL_5TBW_014 IL_60992.6 | |
| IL_7TOO_015 | 1/A25S/404:410, 1/A58S/13:19 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5TBW_015 IL_66414.6 | |
| IL_7TOO_016 | 1/A25S/429:431, 1/A25S/628:630 | No text annotation Not in a motif group | geometric IL_5TBW_016 IL_51629.2 | |
| IL_7TOO_018 | 1/A25S/512:513, 1/A25S/577:579 | No text annotation Not in a motif group | homologous IL_8C3A_020 IL_37497.2 | |
| IL_7TOO_019 | 1/A25S/517:525, 1/A25S/567:573 | No text annotation Not in a motif group | geometric IL_5TBW_019 IL_23992.1 | |
| IL_7TOO_020 | 1/A25S/531:538, 1/A25S/553:561 | No text annotation Not in a motif group | geometric IL_5TBW_020 IL_07703.1 | |
| IL_7TOO_021 | 1/A25S/668:670, 1/A25S/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_95997.1 | |
| IL_7TOO_022 | 1/A25S/680:684, 1/A25S/696:700 | No text annotation Not in a motif group | homologous IL_8C3A_024 IL_74284.1 | |
| IL_7TOO_023 | 1/A25S/725:728, 1/A25S/741:745 | No text annotation Not in a motif group | homologous IL_8C3A_025 IL_07235.1 | |
| IL_7TOO_024 | 1/A25S/752:753, 1/A25S/779:781 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.2 | |
| IL_7TOO_025 | 1/A25S/755:756, 1/A25S/775:777 | No text annotation Not in a motif group | homologous IL_8C3A_027 IL_83039.13 | |
| IL_7TOO_026 | 1/A25S/758:763, 1/A25S/768:773 | No text annotation Not in a motif group | geometric IL_5TBW_026 IL_19954.2 | |
| IL_7TOO_027 | 1/A25S/803:805, 1/A25S/938:940 | No text annotation Not in a motif group | homologous IL_8C3A_029 IL_95997.1 | |
| IL_7TOO_028 | 1/A25S/805:809, 1/A25S/931:938 | No text annotation Not in a motif group | homologous IL_8C3A_030 IL_17470.6 | |
| IL_7TOO_029 | 1/A25S/833:834, 1/A25S/859:861 | Single bulged G Not in a motif group | geometric IL_7RQB_020 IL_00225.2 | |
| IL_7TOO_030 | 1/A25S/834:838, 1/A25S/855:859 | No text annotation Not in a motif group | homologous IL_8C3A_033 IL_56467.8 | |
| IL_7TOO_031 | 1/A25S/869:872, 1/A25S/888:890 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.2 | |
| IL_7TOO_032 | 1/A25S/873:875, 1/A25S/886:887 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.13 | |
| IL_7TOO_033 | 1/A25S/907:909, 1/A25S/919:923 | No text annotation Not in a motif group | homologous IL_8C3A_036 IL_90991.6 | |
| IL_7TOO_034 | 1/A25S/954:956, 1/A25S/965:967 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
| IL_7TOO_035 | 1/A25S/969:970, 1/A25S/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_7TOO_036 | 1/A25S/977:981, 1/A25S/1102:1104 | No text annotation Not in a motif group | geometric IL_5TBW_036 IL_67474.4 | |
| IL_7TOO_037 | 1/A25S/983:985, 1/A25S/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_7TOO_038 | 1/A25S/991:997, 1/A25S/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5TBW_038 IL_93830.3 | |
| IL_7TOO_039 | 1/A25S/997:998, 1/A25S/1050:1052 | No text annotation Not in a motif group | homologous IL_8C3A_042 IL_42622.2 | |
| IL_7TOO_040 | 1/A25S/999:1004, 1/A25S/1046:1049 | No text annotation Not in a motif group | homologous IL_8C3A_043 IL_02509.1 | |
| IL_7TOO_041 | 1/A25S/1006:1009, 1/A25S/1041:1044 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.2 | |
| IL_7TOO_042 | 1/A25S/1009:1011, 1/A25S/1039:1041 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_7TOO_043 | 1/A25S/1014:1018, 1/A25S/1034:1036 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_7TOO_044 | 1/A25S/1069:1071, 1/A25S/1087:1089 | No text annotation Not in a motif group | homologous IL_8C3A_047 IL_95997.1 | |
| IL_7TOO_045 | 1/A25S/1074:1076, 1/A25S/1083:1084 | No text annotation Not in a motif group | homologous IL_8C3A_048 IL_00225.2 | |
| IL_7TOO_046 | 1/A25S/1120:1122, 1/A25S/1136:1138 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_95997.1 | |
| IL_7TOO_047 | 1/A25S/1167:1171, 1/A25S/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_7TOO_048 | 1/A25S/1173:1180, 1/A25S/1325:1326 | No text annotation Not in a motif group | homologous IL_8C3A_052 IL_15861.7 | |
| IL_7TOO_049 | 1/A25S/1180:1182, 1/A25S/1324:1325 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.13 | |
| IL_7TOO_050 | 1/A25S/1187:1194, 1/A25S/1314:1319 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_27086.1 | |
| IL_7TOO_051 | 1/A25S/1194:1205, 1/A25S/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_7TOO_052 | 1/A25S/1207:1209, 1/A25S/1296:1297 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.13 | |
| IL_7TOO_053 | 1/A25S/1218:1226, 1/A25S/1283:1287 | Kink-turn Not in a motif group | geometric IL_4V9F_042 IL_90538.4 | |
| IL_7TOO_054 | 1/A25S/1234:1238, 1/A25S/1250:1254 | No text annotation Not in a motif group | homologous IL_8C3A_058 IL_30542.3 | |
| IL_7TOO_055 | 1/A25S/1262:1266, 1/A25S/1275:1277 | Major groove platform with extra cWW Not in a motif group | geometric IL_1MMS_002 IL_05564.2 | |
| IL_7TOO_056 | 1/A25S/1376:1378, 1/A25S/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_7TOO_057 | 1/A25S/1385:1387, 1/A25S/1420:1421 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.2 | |
| IL_7TOO_058 | 1/A25S/1388:1395, 1/A25S/1415:1419 | No text annotation Not in a motif group | homologous IL_8C3A_063 IL_70923.2 | |
| IL_7TOO_059 | 1/A25S/1398:1400, 1/A25S/1411:1412 | Single bulged A Not in a motif group | geometric IL_5TBW_060 IL_37497.2 | |
| IL_7TOO_060 | 1/A25S/1444:1450, 1/A25S/2354:2359 | No text annotation Not in a motif group | homologous IL_8C3A_065 IL_76042.2 | |
| IL_7TOO_061 | 1/A25S/1501:1505, 1/A25S/1513:1515 | C-loop Not in a motif group | geometric IL_7RQB_051 IL_63596.6 | |
| IL_7TOO_062 | 1/A25S/1532:1536, 1/A25S/1585:1590 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_7TOO_063 | 1/A25S/1565:1566, 1/A25S/1572:1574 | Minor groove platform Not in a motif group | geometric IL_5TBW_039 IL_42622.2 | |
| IL_7TOO_064 | 1/A25S/1618:1621, 1/A25S/1824:1826 | No text annotation Not in a motif group | homologous IL_8C3A_070 IL_84698.1 | |
| IL_7TOO_065 | 1/A25S/1623:1625, 1/A25S/1818:1822 | No text annotation Not in a motif group | homologous IL_8C3A_071 IL_82068.2 | |
| IL_7TOO_066 | 1/A25S/1627:1631, 1/A25S/1811:1816 | No text annotation Not in a motif group | homologous IL_8C3A_072 IL_48431.1 | |
| IL_7TOO_067 | 1/A25S/1645:1649, 1/A25S/1806:1810 | No text annotation Not in a motif group | homologous IL_8C3A_073 IL_56467.8 | |
| IL_7TOO_068 | 1/A25S/1661:1663, 1/A25S/1786:1788 | No text annotation Not in a motif group | homologous IL_8C3A_074 IL_95997.1 | |
| IL_7TOO_069 | 1/A25S/1669:1670, 1/A25S/1778:1780 | No text annotation Not in a motif group | homologous IL_8C3A_075 IL_61258.12 | |
| IL_7TOO_070 | 1/A25S/1670:1671, 1/A25S/1776:1778 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_7TOO_071 | 1/A25S/1694:1698, 1/A25S/1747:1752 | No text annotation Not in a motif group | homologous IL_8C3A_077 IL_69313.1 | |
| IL_7TOO_072 | 1/A25S/1702:1707, 1/A25S/1737:1743 | No text annotation Not in a motif group | homologous IL_8C3A_078 IL_39753.1 | |
| IL_7TOO_073 | 1/A25S/1711:1717, 1/A25S/1727:1733 | No text annotation Not in a motif group | homologous IL_8C3A_079 IL_60192.2 | |
| IL_7TOO_074 | 1/A25S/1883:1889, 1/A25S/2346:2349 | No text annotation Not in a motif group | homologous IL_8C3A_080 IL_49460.2 | |
| IL_7TOO_075 | 1/A25S/1895:1897, 1/A25S/2338:2340 | No text annotation Not in a motif group | homologous IL_8C3A_081 IL_54997.7 | |
| IL_7TOO_076 | 1/A25S/1898:1901, 1/A25S/2336:2337 | No text annotation Not in a motif group | homologous IL_8C3A_082 IL_50694.2 | |
| IL_7TOO_077 | 1/A25S/1901:1906, 1/A25S/2333:2336 | No text annotation Not in a motif group | homologous IL_8C3A_083 IL_82842.2 | |
| IL_7TOO_078 | 1/A25S/1918:1923, 1/A25S/1928:1934 | No text annotation Not in a motif group | homologous IL_8C3A_084 IL_65969.2 | |
| IL_7TOO_079 | 1/A25S/1940:1942, 1/A25S/2106:2108 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_7TOO_080 | 1/A25S/1947:1948, 1/A25S/2098:2101 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_7TOO_081 | 1/A25S/2128:2129, 1/A25S/2323:2325 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.2 | |
| IL_7TOO_082 | 1/A25S/2156:2161, 1/A25S/2173:2180 | No text annotation Not in a motif group | homologous IL_8C3A_088 IL_64509.1 | |
| IL_7TOO_083 | 1/A25S/2196:2199, 1/A25S/2245:2246 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.1 | |
| IL_7TOO_084 | 1/A25S/2200:2201, 1/A25S/2241:2244 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_7TOO_085 | 1/A25S/2204:2206, 1/A25S/2237:2238 | Single bulged U Not in a motif group | geometric IL_5TBW_086 IL_83039.13 | |
| IL_7TOO_086 | 1/A25S/2206:2210, 1/A25S/2235:2237 | Major groove platform with extra pair Not in a motif group | geometric IL_5TBW_087 IL_63450.2 | |
| IL_7TOO_087 | 1/A25S/2211:2217, 1/A25S/2228:2234 | No text annotation Not in a motif group | homologous IL_8C3A_093 IL_36973.6 | |
| IL_7TOO_088 | 1/A25S/2276:2277, 1/A25S/2307:2310 | No text annotation Not in a motif group | homologous IL_8C3A_094 IL_59677.2 | |
| IL_7TOO_089 | 1/A25S/2277:2288, 1/A25S/2304:2307 | No text annotation Not in a motif group | geometric IL_5TBW_090 IL_81589.2 | |
| IL_7TOO_090 | 1/A25S/2391:2394, 1/A25S/2986:2988 | No text annotation Not in a motif group | homologous IL_8C3A_096 IL_63450.2 | |
| IL_7TOO_091 | 1/A25S/2396:2398, 1/A25S/2981:2984 | No text annotation Not in a motif group | homologous IL_8C3A_097 IL_54678.5 | |
| IL_7TOO_092 | 1/A25S/2409:2411, 1/A25S/2811:2812 | No text annotation Not in a motif group | homologous IL_8C3A_098 IL_83039.13 | |
| IL_7TOO_093 | 1/A25S/2412:2413, 1/A25S/2807:2810 | No text annotation Not in a motif group | homologous IL_8C3A_099 IL_42622.2 | |
| IL_7TOO_094 | 1/A25S/2423:2425, 1/A25S/2604:2607 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.7 | |
| IL_7TOO_095 | 1/A25S/2444:2449, 1/A25S/2497:2503 | No text annotation Not in a motif group | ||
| IL_7TOO_096 | 1/A25S/2449:2465, 1/A25S/2490:2497 | No text annotation Not in a motif group | ||
| IL_7TOO_097 | 1/A25S/2520:2526, 1/A25S/2584:2587 | No text annotation Not in a motif group | homologous IL_8C3A_106 IL_74114.1 | |
| IL_7TOO_098 | 1/A25S/2614:2615, 1/A25S/2625:2627 | No text annotation Not in a motif group | homologous IL_8C3A_107 IL_69996.1 | |
| IL_7TOO_099 | 1/A25S/2666:2668, 1/A25S/2686:2690 | No text annotation Not in a motif group | homologous IL_8C3A_108 IL_38958.7 | |
| IL_7TOO_100 | 1/A25S/2718:2721, 1/A25S/2735:2738 | No text annotation Not in a motif group | homologous IL_8C3A_109 IL_30621.2 | |
| IL_7TOO_101 | 1/A25S/2770:2773, 1/A25S/2787:2788 | No text annotation Not in a motif group | homologous IL_8C3A_110 IL_76488.2 | |
| IL_7TOO_102 | 1/A25S/2823:2824, 1/A25S/2865:2867 | Major groove platform Not in a motif group | geometric IL_5TBW_102 IL_27635.1 | |
| IL_7TOO_103 | 1/A25S/2824:2826, 1/A25S/2863:2865 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_95997.1 | |
| IL_7TOO_104 | 1/A25S/2826:2828, 1/A25S/2862:2863 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_7TOO_105 | 1/A25S/2828:2830, 1/A25S/2858:2862 | No text annotation Not in a motif group | homologous IL_8C3A_113 IL_92788.2 | |
| IL_7TOO_106 | 1/A25S/2835:2839, 1/A25S/2849:2853 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_7TOO_107 | 1/A25S/2876:2877, 1/A25S/2949:2951 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_7TOO_108 | 1/A25S/2879:2881, 1/A25S/2943:2947 | No text annotation Not in a motif group | homologous IL_8C3A_116 IL_90933.2 | |
| IL_7TOO_109 | 1/A25S/2881:2882, 1/A25S/2940:2943 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_71530.2 | |
| IL_7TOO_110 | 1/A25S/2889:2891, 1/A25S/2912:2914 | No text annotation Not in a motif group | homologous IL_8C3A_118 IL_51629.2 | |
| IL_7TOO_111 | 1/A25S/2891:2892, 1/A25S/2909:2912 | No text annotation Not in a motif group | homologous IL_8C3A_119 IL_95601.3 | |
| IL_7TOO_112 | 1/A25S/2918:2920, 1/A25S/2926:2928 | No text annotation Not in a motif group | homologous IL_8C3A_120 IL_95997.1 | |
| IL_7TOO_113 | 1/A25S/2960:2961, 1/A25S/2970:2972 | No text annotation Not in a motif group | homologous IL_8C3A_122 IL_37497.2 | |
| IL_7TOO_114 | 1/A25S/3004:3007, 1/A25S/3139:3144 | No text annotation Not in a motif group | homologous IL_8C3A_123 IL_09705.9 | |
| IL_7TOO_115 | 1/A25S/3012:3014, 1/A25S/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_7TOO_116 | 1/A25S/3018:3025, 1/A25S/3030:3036 | No text annotation Not in a motif group | homologous IL_8C3A_125 IL_04346.7 | |
| IL_7TOO_117 | 1/A25S/3047:3051, 1/A25S/3091:3094 | No text annotation Not in a motif group | homologous IL_8C3A_126 IL_37712.2 | |
| IL_7TOO_118 | 1/A25S/3054:3059, 1/A25S/3084:3088 | No text annotation Not in a motif group | homologous IL_8C3A_127 IL_17136.1 | |
| IL_7TOO_119 | 1/A25S/3063:3064, 1/A25S/3077:3080 | No text annotation Not in a motif group | homologous IL_8C3A_128 IL_71530.2 | |
| IL_7TOO_120 | 1/A25S/3103:3107, 1/A25S/3127:3131 | No text annotation Not in a motif group | homologous IL_8C3A_129 IL_89002.2 | |
| IL_7TOO_121 | 1/A25S/3164:3166, 1/A25S/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
| IL_7TOO_122 | 1/A25S/3168:3170, 1/A25S/3280:3282 | No text annotation Not in a motif group | geometric IL_5MWI_001 IL_95997.1 | |
| IL_7TOO_123 | 1/A25S/3177:3179, 1/A25S/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.2 | |
| IL_7TOO_124 | 1/A25S/3179:3188, 1/A25S/3204:3210 | No text annotation Not in a motif group | geometric IL_5TBW_124 IL_15174.1 | |
| IL_7TOO_125 | 1/A25S/3193:3194, 1/A25S/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_7TOO_126 | 1/A25S/3225:3229, 1/A25S/3258:3260 | No text annotation Not in a motif group | homologous IL_8C3A_133 IL_19389.6 | |
| IL_7TOO_127 | 1/A25S/3233:3235, 1/A25S/3252:3254 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_7TOO_128 | 1/A25S/3235:3238, 1/A25S/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6MWN_005 IL_30621.2 | |
| IL_7TOO_129 | 1/A25S/3300:3303, 1/A25S/3311:3314 | No text annotation Not in a motif group | homologous IL_8C3A_135 IL_30621.2 | |
| IL_7TOO_130 | 1/A25S/3318:3320, 1/A25S/3387:3388 | No text annotation Not in a motif group | homologous IL_8C3A_136 IL_83039.13 | |
| IL_7TOO_131 | 1/A25S/3324:3325, 1/A25S/3381:3383 | No text annotation Not in a motif group | homologous IL_8C3A_137 IL_83039.13 | |
| IL_7TOO_132 | 1/A25S/3328:3330, 1/A25S/3373:3378 | No text annotation Not in a motif group | homologous IL_8C3A_138 IL_90933.2 | |
| IL_7TOO_133 | 1/A25S/3332:3337, 1/A25S/3367:3371 | No text annotation Not in a motif group | homologous IL_8C3A_139 IL_83162.5 | |
| IL_7TOO_134 | 1/A25S/3340:3342, 1/A25S/3363:3364 | No text annotation Not in a motif group | homologous IL_8C3A_140 IL_83039.13 | |
| IL_7TOO_135 | 1/A25S/3342:3345, 1/A25S/3360:3363 | tWS-tSW Not in a motif group | geometric IL_5TBW_135 IL_09705.9 | |
| IL_7TOO_136 | 1/A25S/3349:3350, 1/A25S/3353:3356 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_136 IL_59677.2 | |
| IL_7TOO_137 | 1/A58S/44:64, 1/A58S/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_44998.1 | |
| IL_7TOO_138 | 1/A58S/64:66, 1/A58S/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_7TOO_139 | 1/A58S/68:69, 1/A58S/89:91 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 | |
| IL_7TOO_140 | 1/A5S/15:16, 1/A5S/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_7TOO_141 | 1/A5S/21:27, 1/A5S/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_7TOO_142 | 1/A5S/28:29, 1/A5S/49:52 | Minor groove platform Not in a motif group | geometric IL_5TBW_374 IL_63797.2 | |
| IL_7TOO_143 | 1/A5S/29:30, 1/A5S/47:49 | Single stack bend Not in a motif group | homologous IL_5TBW_375 IL_76488.2 | |
| IL_7TOO_144 | 1/A5S/32:36, 1/A5S/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_5TBW_376 IL_58103.6 | |
| IL_7TOO_145 | 1/A5S/72:80, 1/A5S/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_7TOO_146 | 1/A5S/84:87, 1/A5S/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7TOO_017 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7TOO_001 | 1/A25S/113:123, 1/A25S/149:158, 1/A25S/263:267 | No text annotation Not in a motif group | ||
| J3_7TOO_002 | 1/A25S/369:376, 1/A25S/403:404, 1/A58S/19:20 | No text annotation Not in a motif group | ||
| J3_7TOO_003 | 1/A25S/502:503, 1/A25S/588:597, 1/A25S/606:611 | No text annotation Not in a motif group | ||
| J3_7TOO_004 | 1/A25S/814:820, 1/A25S/905:907, 1/A25S/923:926 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_7TOO_005 | 1/A25S/828:831, 1/A25S/863:867, 1/A25S/892:897 | No text annotation Not in a motif group | ||
| J3_7TOO_006 | 1/A25S/986:987, 1/A25S/1062:1066, 1/A25S/1092:1098 | No text annotation Not in a motif group | ||
| J3_7TOO_007 | 1/A25S/1230:1232, 1/A25S/1256:1262, 1/A25S/1277:1279 | No text annotation Not in a motif group | homologous J3_8C3A_005 NA | |
| J3_7TOO_008 | 1/A25S/1479:1485, 1/A25S/1857:1859, 1/A25S/1871:1874 | No text annotation Not in a motif group | homologous J3_8C3A_006 NA | |
| J3_7TOO_009 | 1/A25S/1488:1491, 1/A25S/1837:1843, 1/A25S/1852:1854 | No text annotation Not in a motif group | homologous J3_8C3A_007 NA | |
| J3_7TOO_010 | 1/A25S/1526:1531, 1/A25S/1591:1595, 1/A25S/1612:1613 | No text annotation Not in a motif group | ||
| J3_7TOO_011 | 1/A25S/1631:1632, 1/A25S/1641:1645, 1/A25S/1810:1811 | No text annotation Not in a motif group | ||
| J3_7TOO_012 | 1/A25S/2432:2435, 1/A25S/2512:2517, 1/A25S/2590:2597 | No text annotation Not in a motif group | homologous J3_8C3A_008 NA | |
| J3_7TOO_013 | 1/A25S/2529:2532, 1/A25S/2547:2563, 1/A25S/2578:2581 | No text annotation Not in a motif group | ||
| J3_7TOO_014 | 1/A25S/2664:2666, 1/A25S/2690:2692, 1/A25S/2701:2706 | No text annotation Not in a motif group | homologous J3_8C3A_010 NA | |
| J3_7TOO_015 | 1/A25S/2886:2889, 1/A25S/2914:2916, 1/A25S/2930:2936 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_7TOO_016 | 1/A25S/3298:3300, 1/A25S/3314:3318, 1/A25S/3388:3390 | No text annotation Not in a motif group | ||
| J3_7TOO_017 | 1/A5S/9:14, 1/A5S/66:67, 1/A5S/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA |
Problematic loops
No problematic loops
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