4WQF Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_4WQF_001 | 1/AA/58:67 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
HL_4WQF_002 | 1/AA/86:94 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
HL_4WQF_003 | 1/AA/121:126 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
HL_4WQF_004 | 1/AA/136:141 | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
HL_4WQF_005 | 1/AA/183:190 | No text annotation Not in a motif group | homologous HL_7RQB_006 HL_06192.2 | |
HL_4WQF_006 | 1/AA/214:219 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
HL_4WQF_007 | 1/AA/235:241 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
HL_4WQF_008 | 1/AA/269:275 | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.2 | |
HL_4WQF_009 | 1/AA/329:336 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
HL_4WQF_010 | 1/AA/343:347 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
HL_4WQF_011 | 1/AA/351:359 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
HL_4WQF_012 | 1/AA/409:419 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
HL_4WQF_013 | 1/AA/437:444 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
HL_4WQF_014 | 1/AA/488:493 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
HL_4WQF_015 | 1/AA/513:518 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
HL_4WQF_017 | 1/AA/589:598 | No text annotation Not in a motif group | homologous HL_7RQB_018 HL_89380.2 | |
HL_4WQF_018 | 1/AA/635:641 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
HL_4WQF_019 | 1/AA/654:659 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
HL_4WQF_020 | 1/AA/666:672 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
HL_4WQF_021 | 1/AA/759:766 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
HL_4WQF_022 | 1/AA/791:800 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
HL_4WQF_023 | 1/AA/826:832 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_74322.1 | |
HL_4WQF_024 | 1/AA/873:878 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
HL_4WQF_026 | 1/AA/1000:1007 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
HL_4WQF_027 | 1/AA/1024:1031 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
HL_4WQF_028 | 1/AA/1110:1120 | No text annotation Not in a motif group | homologous HL_6PRV_001 HL_07145.1 | |
HL_4WQF_029 | 1/AA/1138:1145 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.2 | |
HL_4WQF_030 | 1/AA/1216:1224 | No text annotation Not in a motif group | homologous HL_7A0S_030 NA | |
HL_4WQF_031 | 1/AA/1268:1273 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
HL_4WQF_032 | 1/AA/1327:1335 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
HL_4WQF_033 | 1/AA/1370:1376 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
HL_4WQF_034 | 1/AA/1409:1414 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
HL_4WQF_035 | 1/AA/1435:1444 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
HL_4WQF_036 | 1/AA/1499:1506 | No text annotation Not in a motif group | geometric HL_7RQB_037 HL_32426.1 | |
HL_4WQF_037 | 1/AA/1538:1544 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
HL_4WQF_038 | 1/AA/1612:1615 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
HL_4WQF_039 | 1/AA/1658:1665 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
HL_4WQF_040 | 1/AA/1677:1682 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
HL_4WQF_041 | 1/AA/1738:1743 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_03562.2 | |
HL_4WQF_042 | 1/AA/1765:1771 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
HL_4WQF_043 | 1/AA/1783:1787 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
HL_4WQF_044 | 1/AA/1808:1818 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
HL_4WQF_045 | 1/AA/1837:1842 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
HL_4WQF_046 | 1/AA/1895:1900 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
HL_4WQF_047 | 1/AA/1932:1942 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
HL_4WQF_048 | 1/AA/1971:1979 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
HL_4WQF_049 | 1/AA/2049:2058 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
HL_4WQF_051 | 1/AA/2226:2231 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_98426.1 | |
HL_4WQF_052 | 1/AA/2260:2268 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
HL_4WQF_053 | 1/AA/2276:2288 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
HL_4WQF_054 | 1/AA/2315:2325 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
HL_4WQF_055 | 1/AA/2336:2343 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
HL_4WQF_056 | 1/AA/2367:2374 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
HL_4WQF_057 | 1/AA/2386:2391 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
HL_4WQF_058 | 1/AA/2416:2425 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
HL_4WQF_059 | 1/AA/2483:2491 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_06192.2 | |
HL_4WQF_060 | 1/AA/2540:2547 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
HL_4WQF_061 | 1/AA/2563:2569 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
HL_4WQF_062 | 1/AA/2606:2611 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
HL_4WQF_063 | 1/AA/2670:2675 | No text annotation Not in a motif group | homologous HL_7RQB_064 HL_42097.1 | |
HL_4WQF_064 | 1/AA/2713:2718 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
HL_4WQF_065 | 1/AA/2758:2772 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
HL_4WQF_067 | 1/AA/2829:2837 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
HL_4WQF_068 | 1/AA/2866:2871 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
HL_4WQF_069 | 1/AB/38:44 | No text annotation Not in a motif group | geometric HL_7RQB_070 HL_87939.1 | |
HL_4WQF_070 | 1/AB/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_42097.1 | |
HL_4WQF_071 | 1/BA/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
HL_4WQF_073 | 1/BA/157:164 | No text annotation Not in a motif group | ||
HL_4WQF_074 | 1/BA/189C:189H | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_10278.1 | |
HL_4WQF_075 | 1/BA/200:217 | No text annotation Not in a motif group | homologous HL_6CZR_076 HL_34168.2 | |
HL_4WQF_076 | 1/BA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
HL_4WQF_077 | 1/BA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
HL_4WQF_078 | 1/BA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
HL_4WQF_080 | 1/BA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
HL_4WQF_081 | 1/BA/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
HL_4WQF_082 | 1/BA/458:473 | No text annotation Not in a motif group | geometric HL_6CZR_083 HL_43656.2 | |
HL_4WQF_083 | 1/BA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
HL_4WQF_084 | 1/BA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
HL_4WQF_085 | 1/BA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
HL_4WQF_086 | 1/BA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
HL_4WQF_087 | 1/BA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
HL_4WQF_088 | 1/BA/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_53837.1 | |
HL_4WQF_089 | 1/BA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
HL_4WQF_090 | 1/BA/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_42097.1 | |
HL_4WQF_091 | 1/BA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
HL_4WQF_092 | 1/BA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
HL_4WQF_094 | 1/BA/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
HL_4WQF_095 | 1/BA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
HL_4WQF_096 | 1/BA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
HL_4WQF_097 | 1/BA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
HL_4WQF_098 | 1/BA/1265:1270 | No text annotation Not in a motif group | homologous HL_6CZR_099 NA | |
HL_4WQF_099 | 1/BA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
HL_4WQF_100 | 1/BA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
HL_4WQF_101 | 1/BA/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
HL_4WQF_102 | 1/BA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
HL_4WQF_103 | 1/BW/13:22 | No text annotation Not in a motif group | homologous HL_6PMO_003 NA | |
HL_4WQF_104 | 1/BW/30:40 | No text annotation Not in a motif group | homologous HL_4QEI_002 HL_34168.2 | |
HL_4WQF_105 | 1/BW/53:61 | No text annotation Not in a motif group | homologous HL_1QF6_003 NA | |
HL_4WQF_107 | 1/BY/30:40 | No text annotation Not in a motif group | homologous HL_5EL4_222 NA | |
HL_4WQF_108 | 1/BY/53:61 | No text annotation Not in a motif group | homologous HL_1FIR_003 NA | |
HL_4WQF_109 | 1/CA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
HL_4WQF_110 | 1/CA/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
HL_4WQF_111 | 1/CA/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
HL_4WQF_112 | 1/CA/139:142A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
HL_4WQF_114 | 1/CA/194:201 | No text annotation Not in a motif group | homologous HL_7RQB_006 HL_06192.2 | |
HL_4WQF_115 | 1/CA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
HL_4WQF_116 | 1/CA/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
HL_4WQF_117 | 1/CA/271I:271O | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.2 | |
HL_4WQF_118 | 1/CA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
HL_4WQF_119 | 1/CA/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
HL_4WQF_120 | 1/CA/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
HL_4WQF_121 | 1/CA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
HL_4WQF_122 | 1/CA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
HL_4WQF_123 | 1/CA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
HL_4WQF_124 | 1/CA/487:493 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
HL_4WQF_126 | 1/CA/566:575 | No text annotation Not in a motif group | geometric HL_7RQB_018 HL_89380.2 | |
HL_4WQF_127 | 1/CA/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
HL_4WQF_128 | 1/CA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
HL_4WQF_129 | 1/CA/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
HL_4WQF_131 | 1/CA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
HL_4WQF_132 | 1/CA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
HL_4WQF_133 | 1/CA/779:785 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_74322.1 | |
HL_4WQF_134 | 1/CA/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
HL_4WQF_136 | 1/CA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
HL_4WQF_137 | 1/CA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
HL_4WQF_138 | 1/CA/1064:1074 | No text annotation Not in a motif group | homologous HL_6PRV_001 HL_07145.1 | |
HL_4WQF_139 | 1/CA/1092:1099 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.2 | |
HL_4WQF_141 | 1/CA/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
HL_4WQF_142 | 1/CA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
HL_4WQF_143 | 1/CA/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
HL_4WQF_144 | 1/CA/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
HL_4WQF_145 | 1/CA/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
HL_4WQF_146 | 1/CA/1451:1459 | No text annotation Not in a motif group | geometric HL_7RQB_037 HL_32426.1 | |
HL_4WQF_147 | 1/CA/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
HL_4WQF_149 | 1/CA/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
HL_4WQF_150 | 1/CA/1612:1619 | No text annotation Not in a motif group | homologous HL_7A0S_040 HL_64430.2 | |
HL_4WQF_151 | 1/CA/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
HL_4WQF_152 | 1/CA/1691:1696 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_03562.2 | |
HL_4WQF_153 | 1/CA/1720:1742 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
HL_4WQF_154 | 1/CA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
HL_4WQF_155 | 1/CA/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
HL_4WQF_156 | 1/CA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
HL_4WQF_157 | 1/CA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
HL_4WQF_158 | 1/CA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
HL_4WQF_159 | 1/CA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
HL_4WQF_160 | 1/CA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
HL_4WQF_162 | 1/CA/2205:2219 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_98426.1 | |
HL_4WQF_163 | 1/CA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
HL_4WQF_164 | 1/CA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
HL_4WQF_165 | 1/CA/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
HL_4WQF_166 | 1/CA/2324:2331 | No text annotation Not in a motif group | geometric HL_7RQB_056 HL_12078.2 | |
HL_4WQF_167 | 1/CA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
HL_4WQF_168 | 1/CA/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
HL_4WQF_169 | 1/CA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
HL_4WQF_170 | 1/CA/2471:2479 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_06192.2 | |
HL_4WQF_171 | 1/CA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
HL_4WQF_172 | 1/CA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
HL_4WQF_173 | 1/CA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
HL_4WQF_174 | 1/CA/2658:2663 | No text annotation Not in a motif group | homologous HL_7RQB_064 HL_42097.1 | |
HL_4WQF_175 | 1/CA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
HL_4WQF_176 | 1/CA/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
HL_4WQF_178 | 1/CA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
HL_4WQF_179 | 1/CA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
HL_4WQF_180 | 1/CB/38:44 | No text annotation Not in a motif group | geometric HL_5J7L_203 HL_87939.1 | |
HL_4WQF_181 | 1/CB/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_42097.1 | |
HL_4WQF_182 | 1/DA/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
HL_4WQF_184 | 1/DA/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
HL_4WQF_185 | 1/DA/189C:189H | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
HL_4WQF_187 | 1/DA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
HL_4WQF_188 | 1/DA/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
HL_4WQF_189 | 1/DA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
HL_4WQF_190 | 1/DA/342:347 | UNCG Not in a motif group | homologous HL_5J7L_009 HL_03562.2 | |
HL_4WQF_191 | 1/DA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
HL_4WQF_192 | 1/DA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
HL_4WQF_193 | 1/DA/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
HL_4WQF_194 | 1/DA/522:527 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
HL_4WQF_195 | 1/DA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
HL_4WQF_196 | 1/DA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
HL_4WQF_197 | 1/DA/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
HL_4WQF_198 | 1/DA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
HL_4WQF_199 | 1/DA/837:849 | No text annotation Not in a motif group | homologous HL_5J7L_018 HL_34168.2 | |
HL_4WQF_200 | 1/DA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
HL_4WQF_201 | 1/DA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
HL_4WQF_202 | 1/DA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
HL_4WQF_203 | 1/DA/1011:1018 | No text annotation Not in a motif group | homologous HL_6CZR_093 NA | |
HL_4WQF_205 | 1/DA/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
HL_4WQF_206 | 1/DA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
HL_4WQF_207 | 1/DA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
HL_4WQF_208 | 1/DA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
HL_4WQF_211 | 1/DA/1356:1366 | No text annotation Not in a motif group | ||
HL_4WQF_212 | 1/DA/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
HL_4WQF_213 | 1/DA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
HL_4WQF_214 | 1/DW/13:22 | No text annotation Not in a motif group | homologous HL_6PMO_003 NA | |
HL_4WQF_215 | 1/DW/30:40 | No text annotation Not in a motif group | homologous HL_4QEI_002 HL_34168.2 | |
HL_4WQF_216 | 1/DW/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA | |
HL_4WQF_218 | 1/DY/30:40 | No text annotation Not in a motif group | homologous HL_4WQ1_224 NA | |
HL_4WQF_219 | 1/DY/53:61 | No text annotation Not in a motif group | homologous HL_1QF6_003 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_4WQF_016 | No text annotation | ||
HL_4WQF_025 | No text annotation | ||
HL_4WQF_050 | UNCG | ||
HL_4WQF_066 | No text annotation | ||
HL_4WQF_072 | No text annotation | ||
HL_4WQF_079 | No text annotation | ||
HL_4WQF_093 | No text annotation | ||
HL_4WQF_106 | No text annotation | ||
HL_4WQF_113 | No text annotation | ||
HL_4WQF_125 | No text annotation | ||
HL_4WQF_130 | No text annotation | ||
HL_4WQF_135 | No text annotation | ||
HL_4WQF_140 | No text annotation | ||
HL_4WQF_148 | No text annotation | ||
HL_4WQF_161 | No text annotation | ||
HL_4WQF_177 | No text annotation | ||
HL_4WQF_183 | No text annotation | ||
HL_4WQF_186 | No text annotation | ||
HL_4WQF_204 | No text annotation | ||
HL_4WQF_209 | Other HL | ||
HL_4WQF_210 | No text annotation | ||
HL_4WQF_217 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_4WQF_001 | 1/AA/24:30, 1/AA/535:541 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
IL_4WQF_002 | 1/AA/36:37, 1/AA/468:470 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
IL_4WQF_003 | 1/AA/42:43, 1/AA/461:463 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
IL_4WQF_004 | 1/AA/80:84, 1/AA/96:103 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
IL_4WQF_005 | 1/AA/172:173, 1/AA/201:203 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
IL_4WQF_006 | 1/AA/177:183, 1/AA/190:197 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
IL_4WQF_007 | 1/AA/228:234, 1/AA/242:247 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
IL_4WQF_008 | 1/AA/291:292, 1/AA/392:394 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_27635.1 | |
IL_4WQF_010 | 1/AA/304:308, 1/AA/381:384 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
IL_4WQF_011 | 1/AA/312:314, 1/AA/374:377 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
IL_4WQF_012 | 1/AA/317:319, 1/AA/367:371 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
IL_4WQF_013 | 1/AA/507:510, 1/AA/521:534 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
IL_4WQF_014 | 1/AA/587:589, 1/AA/598:600 | No text annotation Not in a motif group | geometric IL_7RQB_015 IL_95997.1 | |
IL_4WQF_015 | 1/AA/629:633, 1/AA/643:647 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
IL_4WQF_016 | 1/AA/719:721, 1/AA/853:855 | No text annotation Not in a motif group | homologous IL_5J7L_259 IL_95997.1 | |
IL_4WQF_017 | 1/AA/721:725, 1/AA/846:853 | No text annotation Not in a motif group | geometric IL_7RQB_018 IL_17470.6 | |
IL_4WQF_018 | 1/AA/744:745, 1/AA/810:812 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_37497.2 | |
IL_4WQF_019 | 1/AA/749:750, 1/AA/775:777 | Single bulged G Not in a motif group | geometric IL_7RQB_020 IL_00225.2 | |
IL_4WQF_020 | 1/AA/750:754, 1/AA/771:775 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
IL_4WQF_021 | 1/AA/785:788, 1/AA/803:805 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
IL_4WQF_022 | 1/AA/822:824, 1/AA/834:838 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 IL_90991.6 | |
IL_4WQF_023 | 1/AA/884:885, 1/AA/985:987 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
IL_4WQF_024 | 1/AA/891:893, 1/AA/976:979 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
IL_4WQF_025 | 1/AA/893:897, 1/AA/973:976 | No text annotation Not in a motif group | homologous IL_7RQB_026 IL_94165.1 | |
IL_4WQF_026 | 1/AA/905:909, 1/AA/961:965 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7RQB_027 IL_38862.1 | |
IL_4WQF_027 | 1/AA/909:910, 1/AA/959:961 | Minor groove platform Not in a motif group | homologous IL_7RQB_028 IL_42622.2 | |
IL_4WQF_028 | 1/AA/911:915, 1/AA/955:958 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
IL_4WQF_029 | 1/AA/917:919, 1/AA/951:953 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 IL_52767.2 | |
IL_4WQF_030 | 1/AA/922:924, 1/AA/945:948 | Minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_031 IL_46796.1 | |
IL_4WQF_031 | 1/AA/924:926, 1/AA/944:945 | Minor groove platform Not in a motif group | geometric IL_7RQB_032 IL_93353.1 | |
IL_4WQF_032 | 1/AA/926:930, 1/AA/939:944 | No text annotation Not in a motif group | ||
IL_4WQF_033 | 1/AA/997:999, 1/AA/1008:1010 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
IL_4WQF_034 | 1/AA/1040:1042, 1/AA/1205:1206 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
IL_4WQF_035 | 1/AA/1044:1048, 1/AA/1199:1203 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
IL_4WQF_036 | 1/AA/1050:1057, 1/AA/1196:1197 | SSU/LSU pseudoknot Not in a motif group | homologous IL_7RQB_037 IL_15861.7 | |
IL_4WQF_037 | 1/AA/1057:1059, 1/AA/1195:1196 | Single bulged U Not in a motif group | geometric IL_7RQB_038 IL_83039.13 | |
IL_4WQF_038 | 1/AA/1064:1070, 1/AA/1185:1190 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
IL_4WQF_040 | 1/AA/1089:1098, 1/AA/1153:1158 | No text annotation Not in a motif group | ||
IL_4WQF_042 | 1/AA/1105:1108, 1/AA/1122:1125 | No text annotation Not in a motif group | homologous IL_5J7L_285 IL_23544.2 | |
IL_4WQF_043 | 1/AA/1133:1137, 1/AA/1146:1148 | Major groove platform with extra cWW Not in a motif group | geometric IL_1MMS_002 IL_05564.2 | |
IL_4WQF_044 | 1/AA/1241:1243, 1/AA/1293:1296 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.2 | |
IL_4WQF_045 | 1/AA/1247:1251, 1/AA/1286:1289 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
IL_4WQF_046 | 1/AA/1253:1260, 1/AA/1280:1284 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
IL_4WQF_047 | 1/AA/1264:1266, 1/AA/1275:1276 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
IL_4WQF_048 | 1/AA/1308:1315, 1/AA/2033:2039 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
IL_4WQF_049 | 1/AA/1356:1359, 1/AA/1649:1650 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
IL_4WQF_050 | 1/AA/1365:1369, 1/AA/1377:1379 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
IL_4WQF_051 | 1/AA/1397:1401, 1/AA/1422:1426 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
IL_4WQF_052 | 1/AA/1403:1407, 1/AA/1416:1420 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
IL_4WQF_053 | 1/AA/1461:1462, 1/AA/1629:1633 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
IL_4WQF_054 | 1/AA/1463:1467, 1/AA/1624:1628 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
IL_4WQF_055 | 1/AA/1479:1481, 1/AA/1604:1607 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
IL_4WQF_056 | 1/AA/1483:1486, 1/AA/1598:1602 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
IL_4WQF_057 | 1/AA/1495:1497, 1/AA/1509:1510 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
IL_4WQF_058 | 1/AA/1498:1499, 1/AA/1506:1508 | Single bulged A Not in a motif group | homologous IL_7RQB_059 IL_37497.2 | |
IL_4WQF_059 | 1/AA/1516:1520, 1/AA/1566:1569 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
IL_4WQF_060 | 1/AA/1528:1529, 1/AA/1552:1558 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
IL_4WQF_061 | 1/AA/1535:1537, 1/AA/1545:1546 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
IL_4WQF_062 | 1/AA/1572:1576, 1/AA/1587:1593 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_02656.1 | |
IL_4WQF_063 | 1/AA/1698:1703, 1/AA/2026:2028 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
IL_4WQF_064 | 1/AA/1710:1712, 1/AA/2017:2019 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
IL_4WQF_065 | 1/AA/1713:1716, 1/AA/2015:2016 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
IL_4WQF_066 | 1/AA/1716:1721, 1/AA/2012:2015 | Intercalated tWH Not in a motif group | homologous IL_7RQB_067 IL_82842.2 | |
IL_4WQF_067 | 1/AA/1733:1738, 1/AA/1743:1749 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
IL_4WQF_068 | 1/AA/1801:1802, 1/AA/2002:2004 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
IL_4WQF_069 | 1/AA/1829:1835, 1/AA/1844:1852 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
IL_4WQF_070 | 1/AA/1868:1871, 1/AA/1924:1925 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
IL_4WQF_071 | 1/AA/1872:1873, 1/AA/1920:1923 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 IL_16396.2 | |
IL_4WQF_072 | 1/AA/1877:1880, 1/AA/1915:1916 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
IL_4WQF_073 | 1/AA/1882:1886, 1/AA/1909:1913 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
IL_4WQF_074 | 1/AA/1887:1891, 1/AA/1904:1908 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
IL_4WQF_075 | 1/AA/1955:1956, 1/AA/1986:1989 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 IL_59677.2 | |
IL_4WQF_076 | 1/AA/1956:1967, 1/AA/1983:1986 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
IL_4WQF_077 | 1/AA/2072:2074, 1/AA/2629:2630 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
IL_4WQF_078 | 1/AA/2076:2079, 1/AA/2623:2627 | No text annotation Not in a motif group | ||
IL_4WQF_079 | 1/AA/2089:2091, 1/AA/2454:2455 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
IL_4WQF_080 | 1/AA/2092:2093, 1/AA/2450:2453 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
IL_4WQF_081 | 1/AA/2103:2105, 1/AA/2248:2251 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
IL_4WQF_082 | 1/AA/2107:2109, 1/AA/2244:2246 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
IL_4WQF_083 | 1/AA/2117:2119, 1/AA/2214:2216 | No text annotation Not in a motif group | geometric IL_6IA2_005 IL_95997.1 | |
IL_4WQF_092 | 1/AA/2309:2311, 1/AA/2329:2333 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_088 IL_38958.7 | |
IL_4WQF_093 | 1/AA/2362:2365, 1/AA/2376:2379 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
IL_4WQF_094 | 1/AA/2413:2415, 1/AA/2426:2427 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
IL_4WQF_095 | 1/AA/2465:2466, 1/AA/2510:2512 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.2 | |
IL_4WQF_096 | 1/AA/2466:2467, 1/AA/2508:2510 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
IL_4WQF_097 | 1/AA/2469:2471, 1/AA/2505:2506 | Major groove platform Not in a motif group | homologous IL_4WF9_091 IL_27635.1 | |
IL_4WQF_098 | 1/AA/2471:2473, 1/AA/2501:2505 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_92788.2 | |
IL_4WQF_099 | 1/AA/2478:2482, 1/AA/2492:2496 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
IL_4WQF_100 | 1/AA/2519:2520, 1/AA/2592:2594 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
IL_4WQF_101 | 1/AA/2522:2524, 1/AA/2586:2590 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 IL_90933.2 | |
IL_4WQF_102 | 1/AA/2524:2525, 1/AA/2583:2586 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_098 IL_71530.2 | |
IL_4WQF_103 | 1/AA/2534:2535, 1/AA/2552:2555 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
IL_4WQF_104 | 1/AA/2603:2604, 1/AA/2613:2615 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
IL_4WQF_105 | 1/AA/2648:2652, 1/AA/2787:2795 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
IL_4WQF_106 | 1/AA/2664:2670, 1/AA/2675:2680 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 IL_16458.1 | |
IL_4WQF_107 | 1/AA/2692:2696, 1/AA/2738:2740 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
IL_4WQF_108 | 1/AA/2699:2703, 1/AA/2731:2735 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
IL_4WQF_109 | 1/AA/2707:2708, 1/AA/2723:2727 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
IL_4WQF_110 | 1/AA/2750:2755, 1/AA/2775:2780 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
IL_4WQF_111 | 1/AA/2848:2849, 1/AA/2888:2890 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
IL_4WQF_112 | 1/AA/2853:2856, 1/AA/2880:2884 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
IL_4WQF_113 | 1/AA/2857:2862, 1/AA/2875:2879 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
IL_4WQF_114 | 1/AB/17:18, 1/AB/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
IL_4WQF_115 | 1/AB/23:28, 1/AB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
IL_4WQF_116 | 1/AB/30:31, 1/AB/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
IL_4WQF_117 | 1/AB/34:38, 1/AB/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
IL_4WQF_118 | 1/AB/71:79, 1/AB/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
IL_4WQF_119 | 1/BA/30:32, 1/BA/552:553 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.2 | |
IL_4WQF_120 | 1/BA/44:45, 1/BA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
IL_4WQF_121 | 1/BA/47:52, 1/BA/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
IL_4WQF_122 | 1/BA/54:56, 1/BA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
IL_4WQF_123 | 1/BA/63:66, 1/BA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
IL_4WQF_124 | 1/BA/67:69, 1/BA/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
IL_4WQF_126 | 1/BA/129:131, 1/BA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_119 IL_16396.2 | |
IL_4WQF_127 | 1/BA/132:136, 1/BA/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
IL_4WQF_128 | 1/BA/148:155, 1/BA/166:174 | No text annotation Not in a motif group | ||
IL_4WQF_129 | 1/BA/186:188, 1/BA/189L:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
IL_4WQF_130 | 1/BA/242:247, 1/BA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
IL_4WQF_131 | 1/BA/249:252, 1/BA/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
IL_4WQF_132 | 1/BA/292:293, 1/BA/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
IL_4WQF_133 | 1/BA/367:369, 1/BA/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.13 | |
IL_4WQF_134 | 1/BA/371:376, 1/BA/387:390 | C-loop with extra cWW pair Not in a motif group | geometric IL_4V88_408 IL_93630.2 | |
IL_4WQF_135 | 1/BA/409:416, 1/BA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
IL_4WQF_136 | 1/BA/446:450, 1/BA/483:488 | No text annotation Not in a motif group | ||
IL_4WQF_137 | 1/BA/450:455, 1/BA/476:483 | No text annotation Not in a motif group | ||
IL_4WQF_139 | 1/BA/504:511, 1/BA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
IL_4WQF_141 | 1/BA/515:521, 1/BA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
IL_4WQF_142 | 1/BA/569:575, 1/BA/880:881 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_69996.1 | |
IL_4WQF_143 | 1/BA/580:584, 1/BA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_135 IL_17136.1 | |
IL_4WQF_144 | 1/BA/594:596, 1/BA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
IL_4WQF_145 | 1/BA/597:598, 1/BA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
IL_4WQF_146 | 1/BA/605:612, 1/BA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
IL_4WQF_147 | 1/BA/654:655, 1/BA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
IL_4WQF_148 | 1/BA/657:658, 1/BA/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
IL_4WQF_149 | 1/BA/662:666, 1/BA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
IL_4WQF_150 | 1/BA/673:678, 1/BA/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
IL_4WQF_151 | 1/BA/683:688, 1/BA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
IL_4WQF_152 | 1/BA/774:778, 1/BA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
IL_4WQF_153 | 1/BA/779:783, 1/BA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
IL_4WQF_154 | 1/BA/887:894, 1/BA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
IL_4WQF_155 | 1/BA/922:923, 1/BA/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
IL_4WQF_156 | 1/BA/925:927, 1/BA/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
IL_4WQF_157 | 1/BA/933:935, 1/BA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
IL_4WQF_158 | 1/BA/953:954, 1/BA/1226:1228 | Minor groove platform Not in a motif group | geometric IL_4LFB_038 IL_42622.2 | |
IL_4WQF_159 | 1/BA/993:997, 1/BA/1044:1045 | Minor groove platform Not in a motif group | geometric IL_4LFB_039 IL_47078.1 | |
IL_4WQF_161 | 1/BA/1007:1010, 1/BA/1019:1022 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_110 IL_67743.1 | |
IL_4WQF_162 | 1/BA/1048:1050, 1/BA/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
IL_4WQF_163 | 1/BA/1052:1056, 1/BA/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
IL_4WQF_164 | 1/BA/1057:1058, 1/BA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
IL_4WQF_165 | 1/BA/1060:1061, 1/BA/1195:1197 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.13 | |
IL_4WQF_166 | 1/BA/1061:1063, 1/BA/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
IL_4WQF_167 | 1/BA/1124:1127, 1/BA/1145:1149 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.6 | |
IL_4WQF_168 | 1/BA/1129:1132, 1/BA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
IL_4WQF_170 | 1/BA/1247:1253, 1/BA/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
IL_4WQF_171 | 1/BA/1255:1258, 1/BA/1277:1282 | No text annotation Not in a motif group | homologous IL_6CZR_161 IL_75461.4 | |
IL_4WQF_172 | 1/BA/1259:1260, 1/BA/1274:1276 | Not an internal loop Not in a motif group | geometric IL_4LFB_053 IL_93353.1 | |
IL_4WQF_174 | 1/BA/1303:1308, 1/BA/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
IL_4WQF_175 | 1/BA/1399:1401, 1/BA/1501:1504 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
IL_4WQF_176 | 1/BA/1401:1404, 1/BA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
IL_4WQF_177 | 1/BA/1405:1407, 1/BA/1494:1496 | No text annotation Not in a motif group | geometric IL_5MWI_007 IL_95997.1 | |
IL_4WQF_178 | 1/BA/1407:1409, 1/BA/1491:1494 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
IL_4WQF_179 | 1/BA/1412:1414, 1/BA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
IL_4WQF_180 | 1/BA/1416:1419, 1/BA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
IL_4WQF_181 | 1/BA/1431:1435, 1/BA/1466:1469 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.1 | |
IL_4WQF_182 | 1/BA/1435:1437, 1/BA/1464:1466 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_95997.1 | |
IL_4WQF_183 | 1/BA/1440:1443, 1/BA/1459:1461 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.2 | |
IL_4WQF_184 | 1/CA/24:30, 1/CA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
IL_4WQF_185 | 1/CA/36:37, 1/CA/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
IL_4WQF_186 | 1/CA/42:43, 1/CA/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
IL_4WQF_187 | 1/CA/81:85, 1/CA/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
IL_4WQF_188 | 1/CA/183:184, 1/CA/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
IL_4WQF_189 | 1/CA/188:194, 1/CA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
IL_4WQF_190 | 1/CA/239:245, 1/CA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
IL_4WQF_191 | 1/CA/272D:272E, 1/CA/363E:364 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_27635.1 | |
IL_4WQF_192 | 1/CA/272J:278, 1/CA/362:363 | No text annotation Not in a motif group | homologous IL_7RQB_010 NA | |
IL_4WQF_193 | 1/CA/280:284, 1/CA/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
IL_4WQF_194 | 1/CA/288:290, 1/CA/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
IL_4WQF_195 | 1/CA/293:295, 1/CA/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
IL_4WQF_196 | 1/CA/481:484, 1/CA/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
IL_4WQF_197 | 1/CA/564:566, 1/CA/575:577 | No text annotation Not in a motif group | homologous IL_5J7L_257 IL_95997.1 | |
IL_4WQF_198 | 1/CA/606:610, 1/CA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
IL_4WQF_199 | 1/CA/672:674, 1/CA/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
IL_4WQF_200 | 1/CA/674:678, 1/CA/799:806 | No text annotation Not in a motif group | geometric IL_7RQB_018 IL_17470.6 | |
IL_4WQF_201 | 1/CA/697:698, 1/CA/763:765 | Single bulged A Not in a motif group | homologous IL_7RQB_019 IL_37497.2 | |
IL_4WQF_202 | 1/CA/702:703, 1/CA/728:730 | Single bulged G Not in a motif group | geometric IL_7RQB_020 IL_00225.2 | |
IL_4WQF_203 | 1/CA/703:707, 1/CA/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
IL_4WQF_204 | 1/CA/738:741, 1/CA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
IL_4WQF_205 | 1/CA/775:777, 1/CA/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.6 | |
IL_4WQF_206 | 1/CA/837:838, 1/CA/940:942 | Single stack bend Not in a motif group | homologous IL_4WF9_028 IL_92001.1 | |
IL_4WQF_207 | 1/CA/844:846, 1/CA/931:934 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 IL_52767.2 | |
IL_4WQF_208 | 1/CA/846:850, 1/CA/927:931 | No text annotation Not in a motif group | geometric IL_7RQB_026 IL_94165.1 | |
IL_4WQF_209 | 1/CA/858:862, 1/CA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7RQB_027 IL_38862.1 | |
IL_4WQF_210 | 1/CA/862:863, 1/CA/913:915 | Minor groove platform Not in a motif group | homologous IL_7RQB_028 IL_42622.2 | |
IL_4WQF_211 | 1/CA/864:868, 1/CA/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
IL_4WQF_212 | 1/CA/869:872, 1/CA/905:908 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4EYA_010 IL_30621.2 | |
IL_4WQF_213 | 1/CA/875:877, 1/CA/899:902 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
IL_4WQF_214 | 1/CA/877:882, 1/CA/894:899 | No text annotation Not in a motif group | ||
IL_4WQF_216 | 1/CA/952:954, 1/CA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
IL_4WQF_217 | 1/CA/994:996, 1/CA/1159:1160 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
IL_4WQF_218 | 1/CA/998:1002, 1/CA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
IL_4WQF_219 | 1/CA/1004:1011, 1/CA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.7 | |
IL_4WQF_220 | 1/CA/1011:1013, 1/CA/1149:1150 | Single bulged U Not in a motif group | homologous IL_7RQB_038 IL_83039.13 | |
IL_4WQF_221 | 1/CA/1018:1024, 1/CA/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
IL_4WQF_222 | 1/CA/1043:1052, 1/CA/1107:1112 | No text annotation Not in a motif group | ||
IL_4WQF_224 | 1/CA/1059:1062, 1/CA/1076:1079 | No text annotation Not in a motif group | homologous IL_5J7L_285 IL_23544.2 | |
IL_4WQF_225 | 1/CA/1196:1198, 1/CA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.2 | |
IL_4WQF_226 | 1/CA/1202:1206, 1/CA/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
IL_4WQF_227 | 1/CA/1208:1215, 1/CA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
IL_4WQF_228 | 1/CA/1219:1221, 1/CA/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
IL_4WQF_229 | 1/CA/1262:1269, 1/CA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
IL_4WQF_230 | 1/CA/1310:1313, 1/CA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
IL_4WQF_231 | 1/CA/1319:1323, 1/CA/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
IL_4WQF_232 | 1/CA/1351:1355, 1/CA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
IL_4WQF_233 | 1/CA/1357:1361, 1/CA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
IL_4WQF_234 | 1/CA/1415:1416, 1/CA/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
IL_4WQF_235 | 1/CA/1417:1421, 1/CA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
IL_4WQF_236 | 1/CA/1433:1435, 1/CA/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
IL_4WQF_237 | 1/CA/1437:1440, 1/CA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
IL_4WQF_238 | 1/CA/1448:1450, 1/CA/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
IL_4WQF_239 | 1/CA/1450A:1451, 1/CA/1459:1461 | Single bulged A Not in a motif group | homologous IL_7RQB_059 IL_37497.2 | |
IL_4WQF_240 | 1/CA/1469:1473, 1/CA/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
IL_4WQF_241 | 1/CA/1481:1482, 1/CA/1506:1510 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
IL_4WQF_242 | 1/CA/1489:1491, 1/CA/1499:1500 | No text annotation Not in a motif group | ||
IL_4WQF_243 | 1/CA/1526:1529, 1/CA/1540:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_02656.1 | |
IL_4WQF_244 | 1/CA/1651:1656, 1/CA/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
IL_4WQF_245 | 1/CA/1663:1665, 1/CA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7A0S_060 IL_54997.7 | |
IL_4WQF_246 | 1/CA/1666:1669, 1/CA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
IL_4WQF_247 | 1/CA/1669:1674, 1/CA/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_7RQB_067 IL_82842.2 | |
IL_4WQF_248 | 1/CA/1686:1691, 1/CA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
IL_4WQF_249 | 1/CA/1770:1771, 1/CA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
IL_4WQF_250 | 1/CA/1798:1804, 1/CA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
IL_4WQF_251 | 1/CA/1837:1840, 1/CA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
IL_4WQF_252 | 1/CA/1841:1842, 1/CA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
IL_4WQF_253 | 1/CA/1846:1849, 1/CA/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
IL_4WQF_254 | 1/CA/1851:1855, 1/CA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
IL_4WQF_255 | 1/CA/1856:1860, 1/CA/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
IL_4WQF_256 | 1/CA/1933:1934, 1/CA/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_318 IL_59677.2 | |
IL_4WQF_257 | 1/CA/1934:1945, 1/CA/1961:1964 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
IL_4WQF_258 | 1/CA/2050:2052, 1/CA/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
IL_4WQF_259 | 1/CA/2054:2057, 1/CA/2611:2615 | No text annotation Not in a motif group | homologous IL_7RQB_079 IL_01206.1 | |
IL_4WQF_260 | 1/CA/2067:2069, 1/CA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
IL_4WQF_261 | 1/CA/2070:2071, 1/CA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
IL_4WQF_262 | 1/CA/2081:2083, 1/CA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
IL_4WQF_263 | 1/CA/2085:2087, 1/CA/2232:2234 | No text annotation Not in a motif group | homologous IL_7A0S_078 IL_95997.1 | |
IL_4WQF_264 | 1/CA/2098:2101, 1/CA/2188:2191 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_003 IL_30621.2 | |
IL_4WQF_273 | 1/CA/2297:2299, 1/CA/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 IL_38958.7 | |
IL_4WQF_274 | 1/CA/2350:2353, 1/CA/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
IL_4WQF_275 | 1/CA/2401:2403, 1/CA/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
IL_4WQF_276 | 1/CA/2453:2454, 1/CA/2498:2500 | Single stack bend Not in a motif group | homologous IL_7RQB_091 IL_76488.2 | |
IL_4WQF_277 | 1/CA/2454:2455, 1/CA/2496:2498 | Major groove platform Not in a motif group | geometric IL_7RQB_092 IL_27635.1 | |
IL_4WQF_278 | 1/CA/2457:2459, 1/CA/2493:2494 | Major groove platform Not in a motif group | homologous IL_4WF9_091 IL_27635.1 | |
IL_4WQF_279 | 1/CA/2459:2461, 1/CA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_92788.2 | |
IL_4WQF_280 | 1/CA/2466:2470, 1/CA/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
IL_4WQF_281 | 1/CA/2507:2508, 1/CA/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
IL_4WQF_282 | 1/CA/2510:2512, 1/CA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
IL_4WQF_283 | 1/CA/2512:2513, 1/CA/2571:2574 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 IL_71530.2 | |
IL_4WQF_284 | 1/CA/2522:2523, 1/CA/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
IL_4WQF_286 | 1/CA/2591:2592, 1/CA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
IL_4WQF_287 | 1/CA/2636:2640, 1/CA/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
IL_4WQF_288 | 1/CA/2652:2658, 1/CA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_5J7L_346 IL_16458.1 | |
IL_4WQF_289 | 1/CA/2680:2684, 1/CA/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
IL_4WQF_290 | 1/CA/2687:2691, 1/CA/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
IL_4WQF_291 | 1/CA/2695:2696, 1/CA/2711:2714 | No text annotation Not in a motif group | ||
IL_4WQF_292 | 1/CA/2737:2742, 1/CA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
IL_4WQF_293 | 1/CA/2838:2839, 1/CA/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
IL_4WQF_294 | 1/CA/2843:2846, 1/CA/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
IL_4WQF_295 | 1/CA/2847:2852, 1/CA/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
IL_4WQF_296 | 1/CA/2852:2854, 1/CA/2863:2865 | No text annotation Not in a motif group | geometric IL_4KR9_002 IL_51629.2 | |
IL_4WQF_297 | 1/CB/17:18, 1/CB/65:67 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_37497.2 | |
IL_4WQF_298 | 1/CB/23:28, 1/CB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
IL_4WQF_299 | 1/CB/30:32, 1/CB/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
IL_4WQF_300 | 1/CB/34:38, 1/CB/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
IL_4WQF_301 | 1/CB/71:79, 1/CB/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
IL_4WQF_302 | 1/DA/30:32, 1/DA/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
IL_4WQF_303 | 1/DA/44:45, 1/DA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
IL_4WQF_304 | 1/DA/47:52, 1/DA/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
IL_4WQF_305 | 1/DA/54:56, 1/DA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
IL_4WQF_306 | 1/DA/63:66, 1/DA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
IL_4WQF_307 | 1/DA/67:69, 1/DA/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
IL_4WQF_309 | 1/DA/129:131, 1/DA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
IL_4WQF_310 | 1/DA/132:136, 1/DA/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.3 | |
IL_4WQF_311 | 1/DA/148:153, 1/DA/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
IL_4WQF_312 | 1/DA/186:188, 1/DA/189L:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
IL_4WQF_313 | 1/DA/242:247, 1/DA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
IL_4WQF_314 | 1/DA/249:252, 1/DA/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
IL_4WQF_315 | 1/DA/292:293, 1/DA/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
IL_4WQF_316 | 1/DA/367:369, 1/DA/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.13 | |
IL_4WQF_317 | 1/DA/370:375, 1/DA/389:391 | No text annotation Not in a motif group | ||
IL_4WQF_318 | 1/DA/375:376, 1/DA/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.2 | |
IL_4WQF_319 | 1/DA/409:416, 1/DA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
IL_4WQF_320 | 1/DA/446:450, 1/DA/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
IL_4WQF_321 | 1/DA/450:455, 1/DA/476:483 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
IL_4WQF_323 | 1/DA/504:511, 1/DA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
IL_4WQF_324 | 1/DA/514:521, 1/DA/528:537 | No text annotation Not in a motif group | ||
IL_4WQF_325 | 1/DA/569:575, 1/DA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
IL_4WQF_326 | 1/DA/580:584, 1/DA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
IL_4WQF_327 | 1/DA/594:596, 1/DA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
IL_4WQF_328 | 1/DA/597:598, 1/DA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
IL_4WQF_329 | 1/DA/605:612, 1/DA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
IL_4WQF_330 | 1/DA/654:655, 1/DA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
IL_4WQF_331 | 1/DA/657:658, 1/DA/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
IL_4WQF_332 | 1/DA/662:666, 1/DA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
IL_4WQF_333 | 1/DA/673:678, 1/DA/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
IL_4WQF_334 | 1/DA/683:688, 1/DA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
IL_4WQF_335 | 1/DA/774:778, 1/DA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
IL_4WQF_336 | 1/DA/779:783, 1/DA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
IL_4WQF_337 | 1/DA/887:894, 1/DA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
IL_4WQF_338 | 1/DA/922:923, 1/DA/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
IL_4WQF_339 | 1/DA/925:927, 1/DA/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
IL_4WQF_340 | 1/DA/933:936, 1/DA/1379:1384 | No text annotation Not in a motif group | homologous IL_6CZR_149 IL_93211.1 | |
IL_4WQF_341 | 1/DA/948:950, 1/DA/1231:1233 | No text annotation Not in a motif group | geometric IL_4V9F_105 IL_95997.1 | |
IL_4WQF_342 | 1/DA/953:954, 1/DA/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
IL_4WQF_343 | 1/DA/993:997, 1/DA/1044:1045 | Minor groove platform Not in a motif group | geometric IL_4LFB_039 IL_47078.1 | |
IL_4WQF_347 | 1/DA/1048:1050, 1/DA/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
IL_4WQF_348 | 1/DA/1052:1056, 1/DA/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
IL_4WQF_349 | 1/DA/1057:1058, 1/DA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
IL_4WQF_350 | 1/DA/1060:1061, 1/DA/1195:1197 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.13 | |
IL_4WQF_351 | 1/DA/1061:1063, 1/DA/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
IL_4WQF_354 | 1/DA/1124:1127, 1/DA/1145:1149 | Minor groove platform Not in a motif group | geometric IL_6CZR_158 IL_58103.6 | |
IL_4WQF_355 | 1/DA/1128:1132, 1/DA/1142:1144 | No text annotation Not in a motif group | ||
IL_4WQF_356 | 1/DA/1158:1161, 1/DA/1175:1181 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
IL_4WQF_357 | 1/DA/1247:1253, 1/DA/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
IL_4WQF_358 | 1/DA/1255:1258, 1/DA/1277:1282 | No text annotation Not in a motif group | ||
IL_4WQF_359 | 1/DA/1259:1260, 1/DA/1274:1276 | Not an internal loop Not in a motif group | homologous IL_4LFB_053 IL_93353.1 | |
IL_4WQF_361 | 1/DA/1303:1308, 1/DA/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
IL_4WQF_362 | 1/DA/1399:1401, 1/DA/1501:1504 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
IL_4WQF_363 | 1/DA/1401:1404, 1/DA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
IL_4WQF_364 | 1/DA/1405:1407, 1/DA/1494:1496 | No text annotation Not in a motif group | geometric IL_5MWI_007 IL_95997.1 | |
IL_4WQF_365 | 1/DA/1407:1409, 1/DA/1491:1494 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
IL_4WQF_366 | 1/DA/1412:1414, 1/DA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
IL_4WQF_367 | 1/DA/1416:1419, 1/DA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
IL_4WQF_368 | 1/DA/1431:1435, 1/DA/1466:1469 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.1 | |
IL_4WQF_369 | 1/DA/1435:1437, 1/DA/1464:1466 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_95997.1 | |
IL_4WQF_370 | 1/DA/1440:1443, 1/DA/1459:1461 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.2 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_4WQF_009 | No text annotation | ||
IL_4WQF_039 | Not an internal loop | ||
IL_4WQF_041 | No text annotation | ||
IL_4WQF_084 | Tandem non-canonical cWW pairs | ||
IL_4WQF_085 | Isolated cWH basepair | ||
IL_4WQF_086 | No text annotation | ||
IL_4WQF_087 | No text annotation | ||
IL_4WQF_088 | No text annotation | ||
IL_4WQF_089 | No text annotation | ||
IL_4WQF_090 | Kink-turn | ||
IL_4WQF_091 | No text annotation | ||
IL_4WQF_125 | Tandem non-canonical cWW pairs | ||
IL_4WQF_138 | Tandem non-canonical cWW pairs | ||
IL_4WQF_140 | No text annotation | ||
IL_4WQF_160 | No text annotation | ||
IL_4WQF_169 | UG cWW | ||
IL_4WQF_173 | Minor groove platform | ||
IL_4WQF_215 | No text annotation | ||
IL_4WQF_223 | Tandem non-canonical cWW pairs | ||
IL_4WQF_265 | Isolated cWH basepair | ||
IL_4WQF_266 | No text annotation | ||
IL_4WQF_267 | No text annotation | ||
IL_4WQF_268 | No text annotation | ||
IL_4WQF_269 | No text annotation | ||
IL_4WQF_270 | No text annotation | ||
IL_4WQF_271 | Tandem non-canonical cWW pairs | ||
IL_4WQF_272 | No text annotation | ||
IL_4WQF_285 | No text annotation | ||
IL_4WQF_308 | No text annotation | ||
IL_4WQF_322 | No text annotation | ||
IL_4WQF_344 | No text annotation | ||
IL_4WQF_345 | No text annotation | ||
IL_4WQF_346 | Isolated cWH basepair | ||
IL_4WQF_352 | Isolated cWH basepair | ||
IL_4WQF_353 | No text annotation | ||
IL_4WQF_360 | Minor groove platform | ||
IL_4WQF_371 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_4WQF_001 | 1/AA/730:736, 1/AA/820:822, 1/AA/838:841 | No text annotation Not in a motif group | ||
J3_4WQF_002 | 1/AA/745:747, 1/AA/779:783, 1/AA/807:810 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
J3_4WQF_003 | 1/AA/1101:1103, 1/AA/1127:1133, 1/AA/1148:1150 | No text annotation Not in a motif group | homologous J3_5J7L_040 NA | |
J3_4WQF_004 | 1/AA/1344:1349, 1/AA/1671:1673, 1/AA/1686:1689 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
J3_4WQF_005 | 1/AA/1352:1355, 1/AA/1651:1657, 1/AA/1666:1668 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
J3_4WQF_006 | 1/AA/2113:2115, 1/AA/2218:2222, 1/AA/2235:2240 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
J3_4WQF_007 | 1/AA/2307:2309, 1/AA/2333:2335, 1/AA/2344:2349 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
J3_4WQF_008 | 1/AA/2529:2532, 1/AA/2557:2559, 1/AA/2573:2579 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
J3_4WQF_009 | 1/AA/2802:2804, 1/AA/2816:2821, 1/AA/2899:2903 | No text annotation Not in a motif group | homologous J3_7RQB_013 NA | |
J3_4WQF_010 | 1/BA/826:829, 1/BA/857:861, 1/BA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
J3_4WQF_011 | 1/BA/936:939, 1/BA/1344:1350, 1/BA/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
J3_4WQF_012 | 1/BA/943:946, 1/BA/1235:1237, 1/BA/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
J3_4WQF_013 | 1/BA/954:962, 1/BA/973:984, 1/BA/1221:1226 | No text annotation Not in a motif group | ||
J3_4WQF_014 | 1/BA/990:993, 1/BA/1045:1047, 1/BA/1210:1215 | No text annotation Not in a motif group | homologous J3_6CZR_021 NA | |
J3_4WQF_016 | 1/BA/1063:1068, 1/BA/1107:1113, 1/BA/1187:1193 | No text annotation Not in a motif group | ||
J3_4WQF_017 | 1/BA/1116:1118, 1/BA/1155:1161, 1/BA/1175:1184 | No text annotation Not in a motif group | ||
J3_4WQF_018 | 1/BA/1237:1241, 1/BA/1296:1303, 1/BA/1334:1337 | No text annotation Not in a motif group | ||
J3_4WQF_019 | 1/CA/683:689, 1/CA/773:775, 1/CA/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
J3_4WQF_020 | 1/CA/698:700, 1/CA/732:736, 1/CA/760:763 | No text annotation Not in a motif group | ||
J3_4WQF_021 | 1/CA/1055:1058, 1/CA/1080:1091, 1/CA/1100:1104 | No text annotation Not in a motif group | ||
J3_4WQF_022 | 1/CA/1298:1303, 1/CA/1625:1627, 1/CA/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
J3_4WQF_023 | 1/CA/1306:1309, 1/CA/1605:1611, 1/CA/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
J3_4WQF_024 | 1/CA/2091:2093, 1/CA/2196:2200, 1/CA/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
J3_4WQF_025 | 1/CA/2295:2297, 1/CA/2321:2324, 1/CA/2331:2337 | No text annotation Not in a motif group | ||
J3_4WQF_026 | 1/CA/2517:2520, 1/CA/2545:2547, 1/CA/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
J3_4WQF_027 | 1/DA/826:829, 1/DA/857:861, 1/DA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
J3_4WQF_028 | 1/DA/943:946, 1/DA/1235:1237, 1/DA/1337:1340 | No text annotation Not in a motif group | ||
J3_4WQF_029 | 1/DA/954:962, 1/DA/973:984, 1/DA/1221:1226 | No text annotation Not in a motif group | ||
J3_4WQF_030 | 1/DA/990:993, 1/DA/1045:1047, 1/DA/1210:1215 | No text annotation Not in a motif group | homologous J3_5J7L_007 NA | |
J3_4WQF_032 | 1/DA/1063:1068, 1/DA/1107:1113, 1/DA/1187:1193 | No text annotation Not in a motif group | ||
J3_4WQF_033 | 1/DA/1116:1118, 1/DA/1155:1158, 1/DA/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
J3_4WQF_034 | 1/DA/1237:1241, 1/DA/1296:1303, 1/DA/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_4WQF_015 | No text annotation | ||
J3_4WQF_031 | No text annotation |
Coloring options: