6O8W Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6O8W_001 | 1/A/68:75 | No text annotation Not in a motif group | homologous HL_4WF9_001 HL_86769.3 | |
| HL_6O8W_002 | 1/A/88:96 | No text annotation Not in a motif group | homologous HL_4WF9_002 HL_96598.1 | |
| HL_6O8W_003 | 1/A/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_6O8W_004 | 1/A/137:144 | No text annotation Not in a motif group | homologous HL_4WF9_004 HL_84085.2 | |
| HL_6O8W_005 | 1/A/160:170 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_6O8W_006 | 1/A/197:204 | No text annotation Not in a motif group | homologous HL_7RQB_006 HL_06192.2 | |
| HL_6O8W_007 | 1/A/228:233 | No text annotation Not in a motif group | homologous HL_4WF9_007 HL_02862.2 | |
| HL_6O8W_008 | 1/A/249:255 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_6O8W_009 | 1/A/283:288 | No text annotation Not in a motif group | ||
| HL_6O8W_010 | 1/A/342:349 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_6O8W_011 | 1/A/356:360 | No text annotation Not in a motif group | homologous HL_4WF9_011 HL_75407.1 | |
| HL_6O8W_012 | 1/A/364:372 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.9 | |
| HL_6O8W_013 | 1/A/421:433 | No text annotation Not in a motif group | homologous HL_4WF9_013 HL_91503.4 | |
| HL_6O8W_014 | 1/A/450:457 | No text annotation Not in a motif group | homologous HL_7A0S_014 HL_96598.1 | |
| HL_6O8W_015 | 1/A/502:507 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.2 | |
| HL_6O8W_016 | 1/A/527:532 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.2 | |
| HL_6O8W_017 | 1/A/581:588 | No text annotation Not in a motif group | homologous HL_4WF9_017 HL_50318.1 | |
| HL_6O8W_018 | 1/A/603:612 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_018 HL_89380.2 | |
| HL_6O8W_019 | 1/A/649:655 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_91104.1 | |
| HL_6O8W_020 | 1/A/668:673 | GNRA Not in a motif group | homologous HL_4WF9_020 HL_42097.2 | |
| HL_6O8W_021 | 1/A/680:686 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.2 | |
| HL_6O8W_022 | 1/A/752:759 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_6O8W_023 | 1/A/784:793 | No text annotation Not in a motif group | homologous HL_7A0S_022 HL_39334.6 | |
| HL_6O8W_024 | 1/A/818:826 | No text annotation Not in a motif group | geometric HL_5TBW_021 HL_33817.1 | |
| HL_6O8W_025 | 1/A/866:871 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_64365.1 | |
| HL_6O8W_026 | 1/A/926:932 | No text annotation Not in a motif group | ||
| HL_6O8W_027 | 1/A/995:1002 | No text annotation Not in a motif group | homologous HL_7A0S_026 HL_42097.2 | |
| HL_6O8W_028 | 1/A/1018:1025 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
| HL_6O8W_029 | 1/A/1104:1114 | No text annotation Not in a motif group | ||
| HL_6O8W_030 | 1/A/1209:1218 | No text annotation Not in a motif group | ||
| HL_6O8W_031 | 1/A/1259:1264 | No text annotation Not in a motif group | homologous HL_7A0S_031 HL_87030.2 | |
| HL_6O8W_032 | 1/A/1317:1325 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_032 HL_89380.2 | |
| HL_6O8W_033 | 1/A/1360:1366 | No text annotation Not in a motif group | homologous HL_4WF9_033 HL_46680.1 | |
| HL_6O8W_034 | 1/A/1399:1404 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_6O8W_035 | 1/A/1425:1434 | No text annotation Not in a motif group | homologous HL_4WF9_035 HL_69023.2 | |
| HL_6O8W_036 | 1/A/1493:1504 | No text annotation Not in a motif group | ||
| HL_6O8W_037 | 1/A/1534:1540 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_6O8W_038 | 1/A/1574:1587 | No text annotation Not in a motif group | ||
| HL_6O8W_039 | 1/A/1611:1614 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_6O8W_040 | 1/A/1655:1662 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.2 | |
| HL_6O8W_041 | 1/A/1673:1679 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.2 | |
| HL_6O8W_042 | 1/A/1734:1739 | UNCG Not in a motif group | geometric HL_4LFB_009 HL_03562.2 | |
| HL_6O8W_043 | 1/A/1755:1760 | No text annotation Not in a motif group | homologous HL_7A0S_043 NA | |
| HL_6O8W_044 | 1/A/1766:1770 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_6O8W_045 | 1/A/1791:1801 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_6O8W_046 | 1/A/1820:1825 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.2 | |
| HL_6O8W_047 | 1/A/1882:1887 | No text annotation Not in a motif group | ||
| HL_6O8W_049 | 1/A/1963:1971 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_6O8W_050 | 1/A/2041:2050 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_6O8W_051 | 1/A/2157:2162 | No text annotation Not in a motif group | homologous HL_7RQB_051 NA | |
| HL_6O8W_052 | 1/A/2223:2229 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_6O8W_053 | 1/A/2262:2270 | No text annotation Not in a motif group | homologous HL_4WF9_049 HL_53171.2 | |
| HL_6O8W_054 | 1/A/2278:2290 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_6O8W_055 | 1/A/2317:2327 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_6O8W_056 | 1/A/2338:2345 | No text annotation Not in a motif group | homologous HL_4WF9_052 HL_12078.2 | |
| HL_6O8W_057 | 1/A/2369:2376 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_6O8W_058 | 1/A/2388:2393 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.2 | |
| HL_6O8W_059 | 1/A/2418:2427 | No text annotation Not in a motif group | homologous HL_4WF9_055 HL_30784.2 | |
| HL_6O8W_060 | 1/A/2485:2493 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_6O8W_061 | 1/A/2542:2549 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_91104.1 | |
| HL_6O8W_062 | 1/A/2565:2571 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_6O8W_063 | 1/A/2608:2613 | No text annotation Not in a motif group | homologous HL_7A0S_062 HL_42097.2 | |
| HL_6O8W_064 | 1/A/2672:2677 | GNRA Not in a motif group | geometric HL_4V9F_066 HL_42097.2 | |
| HL_6O8W_065 | 1/A/2715:2720 | Ribsomal LSU H95 Not in a motif group | homologous HL_4WF9_061 HL_46680.1 | |
| HL_6O8W_066 | 1/A/2759:2773 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_6O8W_067 | 1/A/2806:2815 | No text annotation Not in a motif group | ||
| HL_6O8W_068 | 1/A/2830:2838 | No text annotation Not in a motif group | homologous HL_4WF9_064 HL_27930.1 | |
| HL_6O8W_069 | 1/A/2867:2872 | Other HL Not in a motif group | homologous HL_4WF9_065 HL_42097.2 | |
| HL_6O8W_070 | 1/B/36:42 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_6O8W_072 | 1/a/9:19 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_6O8W_073 | 1/a/71:100 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
| HL_6O8W_074 | 1/a/164:169 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.2 | |
| HL_6O8W_075 | 1/a/199:204 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6O8W_076 | 1/a/223:230 | No text annotation Not in a motif group | ||
| HL_6O8W_077 | 1/a/274:282 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_6O8W_078 | 1/a/309:318 | No text annotation Not in a motif group | ||
| HL_6O8W_079 | 1/a/335:348 | No text annotation Not in a motif group | homologous HL_6CZR_079 HL_81205.2 | |
| HL_6O8W_080 | 1/a/357:362 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_6O8W_081 | 1/a/394:399 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.2 | |
| HL_6O8W_082 | 1/a/434:439 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_6O8W_083 | 1/a/477:487 | No text annotation Not in a motif group | ||
| HL_6O8W_084 | 1/a/537:542 | Other HL Not in a motif group | geometric HL_4OQU_004 HL_87030.2 | |
| HL_6O8W_085 | 1/a/632:638 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_6O8W_086 | 1/a/704:713 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_6O8W_087 | 1/a/741:746 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_6O8W_088 | 1/a/801:811 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_6O8W_089 | 1/a/854:863 | No text annotation Not in a motif group | ||
| HL_6O8W_090 | 1/a/878:883 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.2 | |
| HL_6O8W_091 | 1/a/913:918 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.2 | |
| HL_6O8W_092 | 1/a/979:988 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_6O8W_093 | 1/a/1028:1033 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.2 | |
| HL_6O8W_094 | 1/a/1045:1050 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
| HL_6O8W_095 | 1/a/1092:1097 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.2 | |
| HL_6O8W_096 | 1/a/1105:1112 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_6O8W_097 | 1/a/1148:1157 | No text annotation Not in a motif group | ||
| HL_6O8W_098 | 1/a/1180:1186 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_90617.2 | |
| HL_6O8W_099 | 1/a/1280:1285 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.2 | |
| HL_6O8W_100 | 1/a/1329:1338 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_89380.2 | |
| HL_6O8W_101 | 1/a/1371:1381 | No text annotation Not in a motif group | homologous HL_5J7L_029 HL_96366.1 | |
| HL_6O8W_102 | 1/a/1464:1470 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_6O8W_103 | 1/a/1531:1536 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_6O8W_104 | 1/u/13:22 | No text annotation Not in a motif group | homologous HL_6PMO_003 NA | |
| HL_6O8W_105 | 1/u/30:40 | No text annotation Not in a motif group | homologous HL_4WSM_225 HL_36684.1 | |
| HL_6O8W_106 | 1/u/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WT8_217 HL_22280.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6O8W_048 | No text annotation | ||
| HL_6O8W_071 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6O8W_001 | 1/A/25:31, 1/A/549:555 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_4WF9_001 IL_66414.6 | |
| IL_6O8W_002 | 1/A/37:38, 1/A/482:484 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.3 | |
| IL_6O8W_003 | 1/A/44:45, 1/A/474:476 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_6O8W_004 | 1/A/82:86, 1/A/98:105 | Kink-turn Not in a motif group | homologous IL_4WF9_004 IL_45067.2 | |
| IL_6O8W_005 | 1/A/153:156, 1/A/174:177 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3TZR_003 IL_30621.3 | |
| IL_6O8W_006 | 1/A/186:187, 1/A/215:217 | Single stack bend Not in a motif group | homologous IL_7A0S_005 IL_76488.2 | |
| IL_6O8W_007 | 1/A/190:197, 1/A/204:212 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4WF9_008 IL_35728.2 | |
| IL_6O8W_008 | 1/A/241:248, 1/A/256:262 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_009 IL_04346.7 | |
| IL_6O8W_009 | 1/A/305:306, 1/A/403:406 | Major groove minor groove platform; mini C-loop Not in a motif group | geometric IL_4PDB_002 IL_09061.6 | |
| IL_6O8W_010 | 1/A/309:315, 1/A/397:400 | No text annotation Not in a motif group | ||
| IL_6O8W_011 | 1/A/317:319, 1/A/394:395 | Single bulged A Not in a motif group | geometric IL_1JZV_002 IL_37497.3 | |
| IL_6O8W_012 | 1/A/320:322, 1/A/392:393 | Single bulged C Not in a motif group | geometric IL_1S03_006 IL_61258.12 | |
| IL_6O8W_013 | 1/A/330:332, 1/A/380:384 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_6O8W_014 | 1/A/340:342, 1/A/349:351 | No text annotation Not in a motif group | geometric IL_3SZX_002 IL_95997.1 | |
| IL_6O8W_015 | 1/A/521:524, 1/A/535:548 | No text annotation Not in a motif group | homologous IL_4WF9_015 IL_60992.6 | |
| IL_6O8W_016 | 1/A/575:578, 1/A/591:594 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.9 | |
| IL_6O8W_017 | 1/A/601:603, 1/A/612:614 | No text annotation Not in a motif group | geometric IL_3GM7_006 IL_95997.1 | |
| IL_6O8W_018 | 1/A/643:647, 1/A/657:661 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
| IL_6O8W_019 | 1/A/712:714, 1/A/846:849 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_6O8W_020 | 1/A/714:718, 1/A/839:846 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_4WF9_021 IL_17470.6 | |
| IL_6O8W_021 | 1/A/720:722, 1/A/835:837 | No text annotation Not in a motif group | geometric IL_5MWI_002 IL_95997.1 | |
| IL_6O8W_022 | 1/A/737:738, 1/A/803:805 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_37497.3 | |
| IL_6O8W_023 | 1/A/742:743, 1/A/768:770 | Single bulged G Not in a motif group | homologous IL_5J7L_262 IL_00225.3 | |
| IL_6O8W_024 | 1/A/743:747, 1/A/764:768 | Triple sheared Not in a motif group | geometric IL_4WF9_024 IL_56467.8 | |
| IL_6O8W_025 | 1/A/778:780, 1/A/797:798 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.2 | |
| IL_6O8W_026 | 1/A/815:817, 1/A/827:831 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.6 | |
| IL_6O8W_027 | 1/A/877:878, 1/A/980:982 | Single stack bend Not in a motif group | homologous IL_7A0S_022 IL_92001.1 | |
| IL_6O8W_028 | 1/A/883:888, 1/A/973:975 | No text annotation Not in a motif group | ||
| IL_6O8W_029 | 1/A/888:889, 1/A/971:973 | No text annotation Not in a motif group | homologous IL_7A0S_024 IL_92001.1 | |
| IL_6O8W_030 | 1/A/893:894, 1/A/965:967 | Single bulged U Not in a motif group | homologous IL_4WF9_030 IL_83039.14 | |
| IL_6O8W_031 | 1/A/895:897, 1/A/963:964 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6O8W_032 | 1/A/916:921, 1/A/939:943 | No text annotation Not in a motif group | ||
| IL_6O8W_033 | 1/A/921:925, 1/A/933:939 | No text annotation Not in a motif group | ||
| IL_6O8W_034 | 1/A/992:994, 1/A/1003:1005 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_6O8W_035 | 1/A/1034:1036, 1/A/1199:1200 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_6O8W_036 | 1/A/1038:1042, 1/A/1193:1197 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.2 | |
| IL_6O8W_037 | 1/A/1044:1051, 1/A/1190:1191 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4WF9_037 IL_15861.7 | |
| IL_6O8W_038 | 1/A/1051:1053, 1/A/1189:1190 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.14 | |
| IL_6O8W_039 | 1/A/1058:1064, 1/A/1180:1184 | No text annotation Not in a motif group | homologous IL_5J7L_280 IL_57188.3 | |
| IL_6O8W_040 | 1/A/1064:1070, 1/A/1164:1180 | No text annotation Not in a motif group | geometric IL_4WF9_040 IL_50715.1 | |
| IL_6O8W_041 | 1/A/1071:1074, 1/A/1161:1163 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7A0S_038 IL_82068.2 | |
| IL_6O8W_042 | 1/A/1083:1091, 1/A/1148:1152 | Kink-turn Not in a motif group | homologous IL_5J7L_284 IL_90538.4 | |
| IL_6O8W_043 | 1/A/1094:1098, 1/A/1120:1145 | No text annotation Not in a motif group | ||
| IL_6O8W_044 | 1/A/1099:1102, 1/A/1116:1119 | No text annotation Not in a motif group | ||
| IL_6O8W_045 | 1/A/1234:1236, 1/A/1284:1287 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
| IL_6O8W_046 | 1/A/1242:1244, 1/A/1276:1278 | Isolated cWH basepair Not in a motif group | homologous IL_4WF9_045 IL_51629.2 | |
| IL_6O8W_047 | 1/A/1245:1252, 1/A/1271:1275 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_6O8W_048 | 1/A/1256:1258, 1/A/1265:1267 | Intercalated cWW Not in a motif group | homologous IL_4WF9_047 IL_82842.2 | |
| IL_6O8W_049 | 1/A/1299:1306, 1/A/2025:2031 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_048 IL_04346.7 | |
| IL_6O8W_050 | 1/A/1346:1349, 1/A/1646:1647 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_049 IL_50694.2 | |
| IL_6O8W_051 | 1/A/1355:1359, 1/A/1367:1369 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_4WF9_050 IL_37712.2 | |
| IL_6O8W_052 | 1/A/1387:1391, 1/A/1412:1416 | UAA/GAN Not in a motif group | homologous IL_7A0S_048 IL_89002.2 | |
| IL_6O8W_053 | 1/A/1393:1397, 1/A/1406:1410 | tSH-tHW-tHS Not in a motif group | homologous IL_4WF9_052 IL_17136.1 | |
| IL_6O8W_054 | 1/A/1459:1463, 1/A/1623:1626 | Other IL Not in a motif group | homologous IL_4WF9_054 IL_04059.1 | |
| IL_6O8W_055 | 1/A/1474:1477, 1/A/1603:1607 | No text annotation Not in a motif group | ||
| IL_6O8W_056 | 1/A/1479:1482, 1/A/1597:1601 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_6O8W_057 | 1/A/1511:1514, 1/A/1564:1569 | No text annotation Not in a motif group | ||
| IL_6O8W_058 | 1/A/1518:1521, 1/A/1557:1560 | Double sheared Not in a motif group | geometric IL_5J7L_333 IL_09705.9 | |
| IL_6O8W_059 | 1/A/1524:1526, 1/A/1548:1554 | No text annotation Not in a motif group | ||
| IL_6O8W_060 | 1/A/1694:1699, 1/A/2018:2020 | No text annotation Not in a motif group | homologous IL_4WF9_062 IL_12566.2 | |
| IL_6O8W_061 | 1/A/1706:1708, 1/A/2009:2011 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.7 | |
| IL_6O8W_062 | 1/A/1709:1712, 1/A/2007:2008 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4WF9_064 IL_50694.2 | |
| IL_6O8W_063 | 1/A/1712:1717, 1/A/2004:2007 | Intercalated tWH Not in a motif group | homologous IL_7A0S_062 IL_82842.2 | |
| IL_6O8W_064 | 1/A/1729:1734, 1/A/1739:1745 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_6O8W_065 | 1/A/1784:1785, 1/A/1994:1996 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.3 | |
| IL_6O8W_066 | 1/A/1812:1818, 1/A/1827:1835 | Kink-turn related Not in a motif group | homologous IL_7A0S_065 IL_17069.3 | |
| IL_6O8W_067 | 1/A/1851:1854, 1/A/1916:1917 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_6O8W_068 | 1/A/1855:1856, 1/A/1912:1915 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_4WF9_071 IL_69996.1 | |
| IL_6O8W_069 | 1/A/1860:1863, 1/A/1907:1908 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
| IL_6O8W_070 | 1/A/1865:1869, 1/A/1901:1905 | UAA/GAN with extra pair Not in a motif group | homologous IL_4WF9_073 IL_90318.1 | |
| IL_6O8W_071 | 1/A/1870:1874, 1/A/1896:1900 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_6O8W_072 | 1/A/1878:1881, 1/A/1888:1892 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_6O8W_073 | 1/A/1947:1948, 1/A/1978:1981 | Multiple bulged bases Not in a motif group | geometric IL_7A0S_071 IL_59677.2 | |
| IL_6O8W_074 | 1/A/1948:1959, 1/A/1975:1978 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_6O8W_076 | 1/A/2064:2066, 1/A/2631:2632 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.2 | |
| IL_6O8W_077 | 1/A/2068:2070, 1/A/2626:2629 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.5 | |
| IL_6O8W_078 | 1/A/2081:2083, 1/A/2456:2457 | Single bulged U Not in a motif group | homologous IL_4WF9_080 IL_83039.14 | |
| IL_6O8W_080 | 1/A/2095:2097, 1/A/2250:2253 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_6O8W_081 | 1/A/2109:2111, 1/A/2206:2208 | No text annotation Not in a motif group | geometric IL_4YHW_001 IL_95997.1 | |
| IL_6O8W_082 | 1/A/2117:2119, 1/A/2198:2200 | No text annotation Not in a motif group | geometric IL_3SZX_002 IL_95997.1 | |
| IL_6O8W_083 | 1/A/2122:2124, 1/A/2193:2195 | No text annotation Not in a motif group | homologous IL_3U4M_001 IL_95997.1 | |
| IL_6O8W_084 | 1/A/2124:2134, 1/A/2192:2193 | No text annotation Not in a motif group | ||
| IL_6O8W_085 | 1/A/2138:2141, 1/A/2175:2188 | No text annotation Not in a motif group | homologous IL_7RQB_086 NA | |
| IL_6O8W_086 | 1/A/2141:2143, 1/A/2174:2175 | No text annotation Not in a motif group | ||
| IL_6O8W_087 | 1/A/2143:2152, 1/A/2168:2174 | No text annotation Not in a motif group | ||
| IL_6O8W_088 | 1/A/2152:2153, 1/A/2166:2168 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6O8W_089 | 1/A/2216:2218, 1/A/2234:2235 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.14 | |
| IL_6O8W_091 | 1/A/2364:2367, 1/A/2378:2381 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_6O8W_092 | 1/A/2415:2417, 1/A/2428:2429 | Single bulged U Not in a motif group | homologous IL_5J7L_334 IL_83039.14 | |
| IL_6O8W_093 | 1/A/2467:2468, 1/A/2512:2514 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_6O8W_094 | 1/A/2468:2469, 1/A/2510:2512 | Major groove platform Not in a motif group | homologous IL_4WF9_090 IL_27635.2 | |
| IL_6O8W_095 | 1/A/2471:2473, 1/A/2507:2508 | Major groove platform Not in a motif group | geometric IL_7A0S_085 IL_27635.2 | |
| IL_6O8W_096 | 1/A/2473:2475, 1/A/2503:2507 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_4WF9_092 IL_92788.2 | |
| IL_6O8W_097 | 1/A/2480:2484, 1/A/2494:2498 | Triple sheared Not in a motif group | homologous IL_4WF9_093 IL_56467.8 | |
| IL_6O8W_098 | 1/A/2521:2522, 1/A/2594:2596 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_6O8W_099 | 1/A/2524:2526, 1/A/2588:2592 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7A0S_089 IL_90933.2 | |
| IL_6O8W_100 | 1/A/2526:2527, 1/A/2585:2588 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 IL_71530.2 | |
| IL_6O8W_101 | 1/A/2536:2537, 1/A/2554:2557 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_6O8W_102 | 1/A/2605:2606, 1/A/2615:2617 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.3 | |
| IL_6O8W_103 | 1/A/2650:2654, 1/A/2788:2796 | tSH-tHS-tHW Not in a motif group | homologous IL_7A0S_093 IL_04638.1 | |
| IL_6O8W_104 | 1/A/2666:2672, 1/A/2677:2682 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7A0S_094 IL_16458.1 | |
| IL_6O8W_106 | 1/A/2701:2705, 1/A/2732:2736 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
| IL_6O8W_107 | 1/A/2709:2710, 1/A/2725:2728 | Multiple bulged bases Not in a motif group | homologous IL_4WF9_103 IL_71530.2 | |
| IL_6O8W_108 | 1/A/2751:2756, 1/A/2776:2781 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_6O8W_110 | 1/A/2849:2850, 1/A/2889:2891 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_6O8W_111 | 1/A/2854:2857, 1/A/2881:2885 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_6O8W_113 | 1/B/15:16, 1/B/63:65 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_37497.3 | |
| IL_6O8W_115 | 1/B/28:29, 1/B/49:52 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_357 IL_09061.6 | |
| IL_6O8W_116 | 1/B/32:36, 1/B/42:46 | Symmetric double minor groove platform Not in a motif group | geometric IL_5TBW_376 IL_58103.6 | |
| IL_6O8W_117 | 1/a/41:42, 1/a/411:413 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.3 | |
| IL_6O8W_118 | 1/a/44:49, 1/a/374:376 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_11178.1 | |
| IL_6O8W_119 | 1/a/51:53, 1/a/371:372 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_93353.1 | |
| IL_6O8W_120 | 1/a/60:63, 1/a/108:109 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_6O8W_121 | 1/a/64:68, 1/a/103:107 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_6O8W_122 | 1/a/134:137, 1/a/246:247 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_6O8W_123 | 1/a/138:142, 1/a/242:245 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_6O8W_124 | 1/a/150:152, 1/a/182:184 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_51629.2 | |
| IL_6O8W_125 | 1/a/153:159, 1/a/174:181 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_6O8W_126 | 1/a/257:262, 1/a/292:299 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_6O8W_127 | 1/a/264:267, 1/a/289:290 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_6O8W_128 | 1/a/307:308, 1/a/319:323 | C-loop Not in a motif group | homologous IL_5J7L_016 IL_37712.2 | |
| IL_6O8W_129 | 1/a/382:384, 1/a/407:408 | Single bulged U Not in a motif group | geometric IL_5TBW_053 IL_83039.14 | |
| IL_6O8W_130 | 1/a/386:390, 1/a/404:405 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6O8W_131 | 1/a/390:391, 1/a/402:404 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.3 | |
| IL_6O8W_132 | 1/a/424:431, 1/a/442:448 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_6O8W_133 | 1/a/472:477, 1/a/487:492 | No text annotation Not in a motif group | ||
| IL_6O8W_134 | 1/a/517:518, 1/a/557:559 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6O8W_135 | 1/a/519:526, 1/a/555:556 | SSU/LSU pseudoknot Not in a motif group | homologous IL_6CZR_132 IL_15861.7 | |
| IL_6O8W_136 | 1/a/530:536, 1/a/543:551 | No text annotation Not in a motif group | ||
| IL_6O8W_137 | 1/a/584:590, 1/a/896:897 | No text annotation Not in a motif group | homologous IL_6CZR_134 IL_69996.1 | |
| IL_6O8W_138 | 1/a/595:599, 1/a/772:776 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_6O8W_139 | 1/a/609:611, 1/a/659:660 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.2 | |
| IL_6O8W_140 | 1/a/612:613, 1/a/655:658 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_6O8W_141 | 1/a/619:620, 1/a/647:649 | No text annotation Not in a motif group | ||
| IL_6O8W_142 | 1/a/620:628, 1/a/642:647 | No text annotation Not in a motif group | ||
| IL_6O8W_143 | 1/a/669:670, 1/a/766:769 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_6O8W_144 | 1/a/671:674, 1/a/761:765 | No text annotation Not in a motif group | ||
| IL_6O8W_145 | 1/a/677:681, 1/a/755:758 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_6O8W_146 | 1/a/688:693, 1/a/727:732 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_6O8W_147 | 1/a/699:703, 1/a/714:721 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_6O8W_148 | 1/a/789:794, 1/a/818:820 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_6O8W_149 | 1/a/794:798, 1/a/814:818 | tSH-tHW-tHS Not in a motif group | geometric IL_4LFB_033 IL_17136.1 | |
| IL_6O8W_150 | 1/a/903:910, 1/a/921:926 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_6O8W_151 | 1/a/938:939, 1/a/1408:1410 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.3 | |
| IL_6O8W_152 | 1/a/941:943, 1/a/1405:1406 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.3 | |
| IL_6O8W_153 | 1/a/949:951, 1/a/1395:1399 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_6O8W_154 | 1/a/969:970, 1/a/1241:1243 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_6O8W_155 | 1/a/1009:1014, 1/a/1059:1061 | No text annotation Not in a motif group | ||
| IL_6O8W_156 | 1/a/1014:1015, 1/a/1057:1059 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.2 | |
| IL_6O8W_157 | 1/a/1064:1066, 1/a/1223:1224 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.14 | |
| IL_6O8W_158 | 1/a/1068:1072, 1/a/1219:1221 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_6O8W_159 | 1/a/1073:1074, 1/a/1214:1218 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_6O8W_160 | 1/a/1076:1077, 1/a/1210:1212 | Single bulged A Not in a motif group | homologous IL_5J7L_049 IL_37497.3 | |
| IL_6O8W_161 | 1/a/1077:1079, 1/a/1208:1210 | No text annotation Not in a motif group | geometric IL_5J7L_050 IL_95997.1 | |
| IL_6O8W_162 | 1/a/1140:1143, 1/a/1160:1164 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.6 | |
| IL_6O8W_163 | 1/a/1145:1148, 1/a/1157:1158 | Minor groove platform Not in a motif group | geometric IL_5J7L_007 IL_15052.1 | |
| IL_6O8W_164 | 1/a/1173:1176, 1/a/1190:1196 | No text annotation Not in a motif group | homologous IL_5J7L_053 IL_42032.1 | |
| IL_6O8W_165 | 1/a/1261:1268, 1/a/1299:1306 | No text annotation Not in a motif group | ||
| IL_6O8W_166 | 1/a/1270:1273, 1/a/1292:1297 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_6O8W_167 | 1/a/1274:1277, 1/a/1288:1291 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_461 IL_30621.3 | |
| IL_6O8W_168 | 1/a/1318:1323, 1/a/1344:1349 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_6O8W_169 | 1/a/1414:1416, 1/a/1517:1520 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_6O8W_170 | 1/a/1416:1420, 1/a/1512:1517 | No text annotation Not in a motif group | ||
| IL_6O8W_171 | 1/a/1420:1422, 1/a/1510:1512 | No text annotation Not in a motif group | geometric IL_5MWI_007 IL_95997.1 | |
| IL_6O8W_172 | 1/a/1422:1424, 1/a/1507:1510 | No text annotation Not in a motif group | ||
| IL_6O8W_173 | 1/a/1427:1429, 1/a/1502:1504 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_6O8W_174 | 1/a/1431:1434, 1/a/1497:1500 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_6O8W_175 | 1/a/1439:1442, 1/a/1489:1492 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_100 IL_30621.3 | |
| IL_6O8W_176 | 1/a/1445:1450, 1/a/1482:1486 | Triple sheared related Not in a motif group | geometric IL_5J7L_063 IL_64879.2 | |
| IL_6O8W_177 | 1/a/1450:1452, 1/a/1480:1482 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_6O8W_178 | 1/a/1455:1458, 1/a/1475:1477 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_082 IL_38958.7 | |
| IL_6O8W_179 | 1/a/1460:1463, 1/a/1471:1473 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6O8W_075 | Not an internal loop | ||
| IL_6O8W_079 | Minor groove platform | ||
| IL_6O8W_090 | Isolated tHS basepair with bulges | ||
| IL_6O8W_105 | No text annotation | ||
| IL_6O8W_109 | No text annotation | ||
| IL_6O8W_112 | No text annotation | ||
| IL_6O8W_114 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6O8W_001 | 1/A/31:32, 1/A/514:521, 1/A/548:549 | No text annotation Not in a motif group | ||
| J3_6O8W_002 | 1/A/57:68, 1/A/75:77, 1/A/110:114 | No text annotation Not in a motif group | ||
| J3_6O8W_003 | 1/A/272:276, 1/A/295:302, 1/A/409:410 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
| J3_6O8W_004 | 1/A/723:729, 1/A/813:815, 1/A/831:834 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
| J3_6O8W_005 | 1/A/738:740, 1/A/772:776, 1/A/800:803 | No text annotation Not in a motif group | homologous J3_7A0S_005 NA | |
| J3_6O8W_006 | 1/A/1334:1339, 1/A/1668:1670, 1/A/1682:1685 | No text annotation Not in a motif group | homologous J3_4WF9_004 NA | |
| J3_6O8W_007 | 1/A/1341:1345, 1/A/1648:1654, 1/A/1663:1666 | No text annotation Not in a motif group | homologous J3_4WF9_005 NA | |
| J3_6O8W_008 | 1/A/2105:2107, 1/A/2210:2215, 1/A/2236:2242 | No text annotation Not in a motif group | homologous J3_4WF9_007 NA | |
| J3_6O8W_011 | 1/A/2825:2826, 1/A/2842:2847, 1/A/2893:2897 | No text annotation Not in a motif group | ||
| J3_6O8W_012 | 1/B/9:14, 1/B/66:69, 1/B/103:107 | No text annotation Not in a motif group | ||
| J3_6O8W_013 | 1/a/43:44, 1/a/376:382, 1/a/408:410 | No text annotation Not in a motif group | ||
| J3_6O8W_014 | 1/a/601:603, 1/a/666:669, 1/a/769:770 | No text annotation Not in a motif group | ||
| J3_6O8W_015 | 1/a/687:688, 1/a/732:740, 1/a/747:749 | No text annotation Not in a motif group | ||
| J3_6O8W_016 | 1/a/841:844, 1/a/873:877, 1/a/884:890 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_6O8W_017 | 1/a/959:962, 1/a/1250:1252, 1/a/1352:1355 | No text annotation Not in a motif group | ||
| J3_6O8W_018 | 1/a/971:978, 1/a/989:1000, 1/a/1236:1240 | No text annotation Not in a motif group | ||
| J3_6O8W_019 | 1/a/1006:1009, 1/a/1061:1063, 1/a/1225:1230 | No text annotation Not in a motif group | ||
| J3_6O8W_020 | 1/a/1079:1084, 1/a/1123:1129, 1/a/1202:1208 | No text annotation Not in a motif group | ||
| J3_6O8W_021 | 1/a/1089:1090, 1/a/1099:1103, 1/a/1114:1118 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_6O8W_022 | 1/a/1132:1134, 1/a/1170:1173, 1/a/1196:1199 | No text annotation Not in a motif group | ||
| J3_6O8W_023 | 1/a/1252:1256, 1/a/1311:1318, 1/a/1349:1352 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6O8W_009 | No text annotation | ||
| J3_6O8W_010 | No text annotation |
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