4V6Z Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V6Z_001 | 1/A1/13:22 | No text annotation Not in a motif group | homologous HL_3WFS_001 NA | |
| HL_4V6Z_002 | 1/A1/31:39 | No text annotation Not in a motif group | ||
| HL_4V6Z_003 | 1/A1/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V8N_145 HL_45820.1 | |
| HL_4V6Z_004 | 1/A3/13:23 | No text annotation Not in a motif group | homologous HL_3WQY_001 HL_32095.1 | |
| HL_4V6Z_005 | 1/A3/32:40 | No text annotation Not in a motif group | homologous HL_5E81_212 HL_36427.1 | |
| HL_4V6Z_006 | 1/A3/54:62 | No text annotation Not in a motif group | homologous HL_1H3E_004 HL_15422.1 | |
| HL_4V6Z_007 | 1/AA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_4V6Z_008 | 1/AA/83:86 | No text annotation Not in a motif group | geometric HL_5F9R_002 HL_11871.1 | |
| HL_4V6Z_009 | 1/AA/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_85603.2 | |
| HL_4V6Z_010 | 1/AA/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_85603.2 | |
| HL_4V6Z_011 | 1/AA/207:212 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_69465.1 | |
| HL_4V6Z_012 | 1/AA/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_61911.1 | |
| HL_4V6Z_013 | 1/AA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_85603.2 | |
| HL_4V6Z_014 | 1/AA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4V6Z_015 | 1/AA/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_29960.2 | |
| HL_4V6Z_016 | 1/AA/379:384 | No text annotation Not in a motif group | geometric HL_7A0S_011 HL_70546.3 | |
| HL_4V6Z_017 | 1/AA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_29960.2 | |
| HL_4V6Z_018 | 1/AA/462:470 | No text annotation Not in a motif group | ||
| HL_4V6Z_019 | 1/AA/521:528 | No text annotation Not in a motif group | homologous HL_6CZR_084 NA | |
| HL_4V6Z_020 | 1/AA/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.4 | |
| HL_4V6Z_021 | 1/AA/689:698 | No text annotation Not in a motif group | homologous HL_6CZR_086 HL_12326.2 | |
| HL_4V6Z_022 | 1/AA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_29031.1 | |
| HL_4V6Z_023 | 1/AA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.2 | |
| HL_4V6Z_024 | 1/AA/840:846 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_45036.1 | |
| HL_4V6Z_025 | 1/AA/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_85603.2 | |
| HL_4V6Z_026 | 1/AA/897:902 | GNRA Not in a motif group | homologous HL_6CZR_091 HL_85603.2 | |
| HL_4V6Z_027 | 1/AA/963:972 | No text annotation Not in a motif group | homologous HL_6CZR_092 HL_50779.1 | |
| HL_4V6Z_028 | 1/AA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_85603.2 | |
| HL_4V6Z_029 | 1/AA/1027:1034 | No text annotation Not in a motif group | ||
| HL_4V6Z_030 | 1/AA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_85603.2 | |
| HL_4V6Z_031 | 1/AA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4V6Z_032 | 1/AA/1134:1140 | No text annotation Not in a motif group | homologous HL_5J7L_025 HL_63154.1 | |
| HL_4V6Z_033 | 1/AA/1165:1171 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_45036.1 | |
| HL_4V6Z_034 | 1/AA/1265:1270 | No text annotation Not in a motif group | homologous HL_6CZR_099 NA | |
| HL_4V6Z_035 | 1/AA/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_23932.1 | |
| HL_4V6Z_036 | 1/AA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_30445.1 | |
| HL_4V6Z_037 | 1/AA/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_29960.2 | |
| HL_4V6Z_038 | 1/AA/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 HL_57293.1 | |
| HL_4V6Z_039 | 1/BA/59:68 | No text annotation Not in a motif group | ||
| HL_4V6Z_040 | 1/BA/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_36514.1 | |
| HL_4V6Z_041 | 1/BA/123:128 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_70546.3 | |
| HL_4V6Z_042 | 1/BA/137:142 | No text annotation Not in a motif group | geometric HL_4KR9_003 HL_36514.1 | |
| HL_4V6Z_043 | 1/BA/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_59342.1 | |
| HL_4V6Z_044 | 1/BA/194:201 | No text annotation Not in a motif group | geometric HL_7RQB_006 NA | |
| HL_4V6Z_045 | 1/BA/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_56241.3 | |
| HL_4V6Z_046 | 1/BA/246:252 | No text annotation Not in a motif group | homologous HL_7A0S_008 HL_67216.8 | |
| HL_4V6Z_047 | 1/BA/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_23932.1 | |
| HL_4V6Z_048 | 1/BA/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_70546.3 | |
| HL_4V6Z_049 | 1/BA/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 NA | |
| HL_4V6Z_050 | 1/BA/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.5 | |
| HL_4V6Z_051 | 1/BA/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.3 | |
| HL_4V6Z_052 | 1/BA/462:467 | GNRA Not in a motif group | homologous HL_5J7L_147 HL_85603.2 | |
| HL_4V6Z_053 | 1/BA/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_85603.2 | |
| HL_4V6Z_054 | 1/BA/543:550 | No text annotation Not in a motif group | homologous HL_7RQB_017 NA | |
| HL_4V6Z_055 | 1/BA/566:575 | No text annotation Not in a motif group | geometric HL_7RQB_011 NA | |
| HL_4V6Z_056 | 1/BA/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.5 | |
| HL_4V6Z_057 | 1/BA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 NA | |
| HL_4V6Z_110 | 1/BA/641:647 | No text annotation Not in a motif group | ||
| HL_4V6Z_059 | 1/BA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 NA | |
| HL_4V6Z_060 | 1/BA/744:753 | No text annotation Not in a motif group | homologous HL_8VTW_022 HL_39334.8 | |
| HL_4V6Z_061 | 1/BA/779:785 | No text annotation Not in a motif group | geometric HL_5J7L_151 HL_90617.5 | |
| HL_4V6Z_062 | 1/BA/826:831 | No text annotation Not in a motif group | homologous HL_7A0S_024 HL_55195.1 | |
| HL_4V6Z_064 | 1/BA/954:963 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_10397.1 | |
| HL_4V6Z_065 | 1/BA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 NA | |
| HL_4V6Z_066 | 1/BA/1064:1074 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_70546.3 | |
| HL_4V6Z_067 | 1/BA/1092:1099 | No text annotation Not in a motif group | homologous HL_7A0S_029 HL_44926.1 | |
| HL_4V6Z_068 | 1/BA/1172:1177 | No text annotation Not in a motif group | geometric HL_5TBW_018 HL_34168.4 | |
| HL_4V6Z_069 | 1/BA/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_29031.1 | |
| HL_4V6Z_070 | 1/BA/1281:1289 | No text annotation Not in a motif group | homologous HL_7A0S_032 HL_23932.1 | |
| HL_4V6Z_071 | 1/BA/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_42228.1 | |
| HL_4V6Z_072 | 1/BA/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 NA | |
| HL_4V6Z_073 | 1/BA/1389:1398 | No text annotation Not in a motif group | homologous HL_4WF9_035 HL_38060.1 | |
| HL_4V6Z_074 | 1/BA/1450:1461 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.7 | |
| HL_4V6Z_075 | 1/BA/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_42228.1 | |
| HL_4V6Z_076 | 1/BA/1533:1538 | No text annotation Not in a motif group | ||
| HL_4V6Z_077 | 1/BA/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_11871.1 | |
| HL_4V6Z_078 | 1/BA/1612:1619 | No text annotation Not in a motif group | homologous HL_7A0S_040 HL_28421.1 | |
| HL_4V6Z_079 | 1/BA/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_58029.1 | |
| HL_4V6Z_080 | 1/BA/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 NA | |
| HL_4V6Z_081 | 1/BA/1728:1731 | No text annotation Not in a motif group | ||
| HL_4V6Z_082 | 1/BA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 NA | |
| HL_4V6Z_083 | 1/BA/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.6 | |
| HL_4V6Z_084 | 1/BA/1806:1811 | No text annotation Not in a motif group | homologous HL_4WF9_044 NA | |
| HL_4V6Z_085 | 1/BA/1868:1873 | GNRA Not in a motif group | geometric HL_3E5C_002 HL_85603.2 | |
| HL_4V6Z_086 | 1/BA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_84702.1 | |
| HL_4V6Z_087 | 1/BA/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.2 | |
| HL_4V6Z_088 | 1/BA/2027:2036 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.7 | |
| HL_4V6Z_089 | 1/BA/2143:2148 | No text annotation Not in a motif group | homologous HL_5J7L_184 NA | |
| HL_4V6Z_090 | 1/BA/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.7 | |
| HL_4V6Z_091 | 1/BA/2248:2256 | No text annotation Not in a motif group | homologous HL_4WF9_049 HL_47383.1 | |
| HL_4V6Z_092 | 1/BA/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.8 | |
| HL_4V6Z_093 | 1/BA/2303:2313 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.7 | |
| HL_4V6Z_094 | 1/BA/2324:2331 | No text annotation Not in a motif group | homologous HL_7A0S_055 HL_12078.6 | |
| HL_4V6Z_095 | 1/BA/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_29031.1 | |
| HL_4V6Z_096 | 1/BA/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_85603.2 | |
| HL_4V6Z_097 | 1/BA/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_14199.1 | |
| HL_4V6Z_098 | 1/BA/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.4 | |
| HL_4V6Z_099 | 1/BA/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_78499.1 | |
| HL_4V6Z_100 | 1/BA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_22584.2 | |
| HL_4V6Z_101 | 1/BA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 NA | |
| HL_4V6Z_102 | 1/BA/2658:2663 | No text annotation Not in a motif group | geometric HL_7A0S_005 HL_58029.1 | |
| HL_4V6Z_103 | 1/BA/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_00828.1 | |
| HL_4V6Z_104 | 1/BA/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.8 | |
| HL_4V6Z_105 | 1/BA/2795:2801 | Other HL Not in a motif group | homologous HL_5J7L_200 HL_34168.4 | |
| HL_4V6Z_106 | 1/BA/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_64690.3 | |
| HL_4V6Z_107 | 1/BA/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_85603.2 | |
| HL_4V6Z_111 | 1/BB/34:48 | No text annotation Not in a motif group | ||
| HL_4V6Z_108 | 1/BB/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_83767.2 | |
| HL_4V6Z_109 | 1/BB/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_11871.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V6Z_058 | No text annotation | ||
| HL_4V6Z_063 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V6Z_001 | 1/AA/28:32, 1/AA/552:555 | No text annotation Not in a motif group | ||
| IL_4V6Z_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.8 | |
| IL_4V6Z_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_14177.1 | |
| IL_4V6Z_004 | 1/AA/54:56, 1/AA/356:357 | Single stack bend Not in a motif group | geometric IL_7RQB_058 NA | |
| IL_4V6Z_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_99483.1 | |
| IL_4V6Z_006 | 1/AA/67:69, 1/AA/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_30659.1 | |
| IL_4V6Z_007 | 1/AA/70:73, 1/AA/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_4V6Z_008 | 1/AA/75:76, 1/AA/93:95 | Major groove intercalation Not in a motif group | geometric IL_5J7L_352 IL_92880.1 | |
| IL_4V6Z_009 | 1/AA/128:131, 1/AA/231:233 | No text annotation Not in a motif group | ||
| IL_4V6Z_010 | 1/AA/132:136, 1/AA/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_64231.1 | |
| IL_4V6Z_011 | 1/AA/144:146, 1/AA/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_66171.1 | |
| IL_4V6Z_012 | 1/AA/147:153, 1/AA/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.3 | |
| IL_4V6Z_013 | 1/AA/203:206, 1/AA/213:214 | No text annotation Not in a motif group | ||
| IL_4V6Z_014 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.4 | |
| IL_4V6Z_015 | 1/AA/249:253, 1/AA/273:275 | No text annotation Not in a motif group | homologous IL_6CZR_124 NA | |
| IL_4V6Z_016 | 1/AA/291:295, 1/AA/302:309 | No text annotation Not in a motif group | ||
| IL_4V6Z_017 | 1/AA/367:369, 1/AA/392:393 | Single bulged U Not in a motif group | geometric IL_3D2V_001 IL_83039.18 | |
| IL_4V6Z_018 | 1/AA/371:375, 1/AA/389:390 | C-loop Not in a motif group | homologous IL_6CZR_127 IL_75255.1 | |
| IL_4V6Z_019 | 1/AA/375:376, 1/AA/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.5 | |
| IL_4V6Z_020 | 1/AA/409:416, 1/AA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.2 | |
| IL_4V6Z_021 | 1/AA/440:442, 1/AA/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_4V6Z_022 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW Not in a motif group | geometric IL_5J7L_022 IL_88269.3 | |
| IL_4V6Z_023 | 1/AA/450:455, 1/AA/477:483 | No text annotation Not in a motif group | homologous IL_4LFB_019 IL_26564.1 | |
| IL_4V6Z_024 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_6CZR_132 IL_15261.1 | |
| IL_4V6Z_025 | 1/AA/515:521, 1/AA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_54177.1 | |
| IL_4V6Z_026 | 1/AA/569:575, 1/AA/880:881 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_38186.2 | |
| IL_4V6Z_027 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.3 | |
| IL_4V6Z_174 | 1/AA/592:594, 1/AA/645:647 | No text annotation Not in a motif group | ||
| IL_4V6Z_028 | 1/AA/594:596, 1/AA/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.5 | |
| IL_4V6Z_029 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.10 | |
| IL_4V6Z_030 | 1/AA/605:613, 1/AA/627:633 | No text annotation Not in a motif group | ||
| IL_4V6Z_031 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5J7L_031 IL_50694.3 | |
| IL_4V6Z_032 | 1/AA/659:660, 1/AA/745:747 | No text annotation Not in a motif group | ||
| IL_4V6Z_033 | 1/AA/661:666, 1/AA/740:744 | No text annotation Not in a motif group | ||
| IL_4V6Z_034 | 1/AA/673:677, 1/AA/713:717 | No text annotation Not in a motif group | ||
| IL_4V6Z_035 | 1/AA/684:688, 1/AA/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.4 | |
| IL_4V6Z_036 | 1/AA/774:778, 1/AA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_4V6Z_037 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.3 | |
| IL_4V6Z_175 | 1/AA/823:825, 1/AA/875:877 | No text annotation Not in a motif group | ||
| IL_4V6Z_038 | 1/AA/831:833, 1/AA/853:855 | Isolated cWS basepair Not in a motif group | geometric IL_7RQB_030 NA | |
| IL_4V6Z_039 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_74733.1 | |
| IL_4V6Z_040 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A Not in a motif group | geometric IL_5J7L_039 IL_37497.8 | |
| IL_4V6Z_041 | 1/AA/923:927, 1/AA/1390:1393 | Other IL Not in a motif group | geometric IL_5J7L_327 IL_36940.1 | |
| IL_4V6Z_042 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.2 | |
| IL_4V6Z_043 | 1/AA/953:954, 1/AA/1226:1228 | No text annotation Not in a motif group | ||
| IL_4V6Z_044 | 1/AA/993:999, 1/AA/1041:1045 | No text annotation Not in a motif group | ||
| IL_4V6Z_045 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.18 | |
| IL_4V6Z_046 | 1/AA/1052:1056, 1/AA/1204:1206 | No text annotation Not in a motif group | homologous IL_6CZR_154 IL_76319.2 | |
| IL_4V6Z_047 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_36388.1 | |
| IL_4V6Z_048 | 1/AA/1059:1063, 1/AA/1193:1198 | No text annotation Not in a motif group | ||
| IL_4V6Z_049 | 1/AA/1114:1116, 1/AA/1184:1186 | No text annotation Not in a motif group | ||
| IL_4V6Z_050 | 1/AA/1124:1128, 1/AA/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_06691.1 | |
| IL_4V6Z_051 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_4V6Z_052 | 1/AA/1158:1161, 1/AA/1175:1181 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
| IL_4V6Z_053 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_4V6Z_054 | 1/AA/1255:1258, 1/AA/1277:1282 | No text annotation Not in a motif group | ||
| IL_4V6Z_055 | 1/AA/1259:1263, 1/AA/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_08257.1 | |
| IL_4V6Z_056 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_61438.1 | |
| IL_4V6Z_057 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_65718.1 | |
| IL_4V6Z_058 | 1/AA/1405:1407, 1/AA/1494:1496 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_64928.1 | |
| IL_4V6Z_059 | 1/AA/1407:1410, 1/AA/1490:1494 | No text annotation Not in a motif group | ||
| IL_4V6Z_176 | 1/AA/1412:1414, 1/AA/1486:1488 | No text annotation Not in a motif group | ||
| IL_4V6Z_177 | 1/AA/1416:1419, 1/AA/1481:1484 | No text annotation Not in a motif group | ||
| IL_4V6Z_062 | 1/AA/1429:1435, 1/AA/1466:1471 | No text annotation Not in a motif group | ||
| IL_4V6Z_063 | 1/AA/1439:1442, 1/AA/1460:1462 | No text annotation Not in a motif group | ||
| IL_4V6Z_178 | 1/AA/1444:1448, 1/AA/1455:1458 | No text annotation Not in a motif group | ||
| IL_4V6Z_065 | 1/BA/36:37, 1/BA/442:444 | Single bulged A Not in a motif group | homologous IL_5J7L_246 IL_37497.8 | |
| IL_4V6Z_066 | 1/BA/43:44, 1/BA/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 NA | |
| IL_4V6Z_067 | 1/BA/81:85, 1/BA/97:105 | No text annotation Not in a motif group | ||
| IL_4V6Z_068 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_250 IL_04346.8 | |
| IL_4V6Z_069 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.3 | |
| IL_4V6Z_070 | 1/BA/269:271, 1/BA/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_4V6Z_071 | 1/BA/274:281, 1/BA/359:363 | No text annotation Not in a motif group | ||
| IL_4V6Z_072 | 1/BA/293:295, 1/BA/343:347 | No text annotation Not in a motif group | homologous IL_4WF9_014 IL_69440.2 | |
| IL_4V6Z_073 | 1/BA/481:484, 1/BA/496:509 | No text annotation Not in a motif group | homologous IL_4WF9_015 IL_60992.7 | |
| IL_4V6Z_074 | 1/BA/536:539, 1/BA/554:557 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.12 | |
| IL_4V6Z_075 | 1/BA/564:566, 1/BA/575:577 | No text annotation Not in a motif group | homologous IL_4WF9_017 IL_64928.1 | |
| IL_4V6Z_076 | 1/BA/606:610, 1/BA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 NA | |
| IL_4V6Z_077 | 1/BA/672:674, 1/BA/806:808 | No text annotation Not in a motif group | geometric IL_4M4O_001 IL_64928.1 | |
| IL_4V6Z_078 | 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_5J7L_260 IL_17470.7 | |
| IL_4V6Z_079 | 1/BA/697:698, 1/BA/763:765 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_37497.8 | |
| IL_4V6Z_080 | 1/BA/702:703, 1/BA/728:730 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.5 | |
| IL_4V6Z_081 | 1/BA/703:707, 1/BA/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 NA | |
| IL_4V6Z_082 | 1/BA/737:740, 1/BA/757:759 | No text annotation Not in a motif group | ||
| IL_4V6Z_083 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases Not in a motif group | geometric IL_4V9F_030 IL_57881.1 | |
| IL_4V6Z_084 | 1/BA/844:848, 1/BA/930:934 | No text annotation Not in a motif group | ||
| IL_4V6Z_179 | 1/BA/848:851, 1/BA/926:930 | No text annotation Not in a motif group | ||
| IL_4V6Z_085 | 1/BA/849:851, 1/BA/926:929 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_30659.1 | |
| IL_4V6Z_086 | 1/BA/856:862, 1/BA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.3 | |
| IL_4V6Z_087 | 1/BA/862:863, 1/BA/913:915 | Single bulged G Not in a motif group | homologous IL_5J7L_271 IL_00225.5 | |
| IL_4V6Z_088 | 1/BA/864:868, 1/BA/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.8 | |
| IL_4V6Z_089 | 1/BA/870:872, 1/BA/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_034 NA | |
| IL_4V6Z_090 | 1/BA/875:879, 1/BA/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_08257.1 | |
| IL_4V6Z_180 | 1/BA/880:881, 1/BA/895:897 | No text annotation Not in a motif group | ||
| IL_4V6Z_092 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.13 | |
| IL_4V6Z_093 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.3 | |
| IL_4V6Z_094 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_71457.1 | |
| IL_4V6Z_095 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.18 | |
| IL_4V6Z_096 | 1/BA/1018:1024, 1/BA/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.4 | |
| IL_4V6Z_097 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.2 | |
| IL_4V6Z_098 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 NA | |
| IL_4V6Z_099 | 1/BA/1038:1041, 1/BA/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_73915.1 | |
| IL_4V6Z_101 | 1/BA/1059:1062, 1/BA/1076:1079 | No text annotation Not in a motif group | homologous IL_6PRV_001 IL_92446.1 | |
| IL_4V6Z_102 | 1/BA/1087:1090, 1/BA/1101:1102 | No text annotation Not in a motif group | homologous IL_6PRV_002 NA | |
| IL_4V6Z_181 | 1/BA/1165:1167, 1/BA/1182:1184 | No text annotation Not in a motif group | ||
| IL_4V6Z_103 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_73554.1 | |
| IL_4V6Z_104 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_4V6Z_105 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7A0S_043 IL_70923.4 | |
| IL_4V6Z_106 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 NA | |
| IL_4V6Z_182 | 1/BA/1310:1313, 1/BA/1603:1604 | No text annotation Not in a motif group | ||
| IL_4V6Z_108 | 1/BA/1319:1323, 1/BA/1331:1333 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_4WF9_050 IL_37712.2 | |
| IL_4V6Z_109 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.3 | |
| IL_4V6Z_110 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.3 | |
| IL_4V6Z_111 | 1/BA/1415:1416, 1/BA/1582:1587 | No text annotation Not in a motif group | ||
| IL_4V6Z_112 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.3 | |
| IL_4V6Z_113 | 1/BA/1432:1435, 1/BA/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.2 | |
| IL_4V6Z_114 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_04059.2 | |
| IL_4V6Z_115 | 1/BA/1468:1472, 1/BA/1519:1524 | No text annotation Not in a motif group | ||
| IL_4V6Z_116 | 1/BA/1474:1478, 1/BA/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.3 | |
| IL_4V6Z_117 | 1/BA/1481:1482, 1/BA/1507:1510 | No text annotation Not in a motif group | ||
| IL_4V6Z_118 | 1/BA/1488:1491, 1/BA/1499:1501 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.3 | |
| IL_4V6Z_119 | 1/BA/1526:1529, 1/BA/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.3 | |
| IL_4V6Z_120 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 NA | |
| IL_4V6Z_121 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.8 | |
| IL_4V6Z_122 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7A0S_061 IL_50694.3 | |
| IL_4V6Z_183 | 1/BA/1666:1674, 1/BA/1990:1994 | No text annotation Not in a motif group | ||
| IL_4V6Z_123 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7A0S_062 IL_68582.1 | |
| IL_4V6Z_124 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 NA | |
| IL_4V6Z_125 | 1/BA/1712:1718, 1/BA/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_4V6Z_126 | 1/BA/1720:1724, 1/BA/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_95716.1 | |
| IL_4V6Z_127 | 1/BA/1727:1728, 1/BA/1731:1733 | Single bulged C Not in a motif group | geometric IL_7A0S_010 IL_61258.13 | |
| IL_4V6Z_128 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.8 | |
| IL_4V6Z_129 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.4 | |
| IL_4V6Z_130 | 1/BA/1837:1840, 1/BA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.4 | |
| IL_4V6Z_131 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_92880.1 | |
| IL_4V6Z_132 | 1/BA/1846:1849, 1/BA/1893:1894 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.10 | |
| IL_4V6Z_184 | 1/BA/1851:1860, 1/BA/1882:1891 | No text annotation Not in a motif group | ||
| IL_4V6Z_133 | 1/BA/1864:1867, 1/BA/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.2 | |
| IL_4V6Z_134 | 1/BA/1933:1934, 1/BA/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 NA | |
| IL_4V6Z_135 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation Not in a motif group | geometric IL_7A0S_072 IL_04332.1 | |
| IL_4V6Z_136 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.5 | |
| IL_4V6Z_137 | 1/BA/2054:2056, 1/BA/2612:2615 | No text annotation Not in a motif group | ||
| IL_4V6Z_138 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.18 | |
| IL_4V6Z_139 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7A0S_076 IL_42622.6 | |
| IL_4V6Z_140 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.9 | |
| IL_4V6Z_141 | 1/BA/2085:2087, 1/BA/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_64928.1 | |
| IL_4V6Z_185 | 1/BA/2101:2105, 1/BA/2184:2188 | No text annotation Not in a motif group | ||
| IL_4V6Z_143 | 1/BA/2108:2110, 1/BA/2179:2181 | No text annotation Not in a motif group | ||
| IL_4V6Z_147 | 1/BA/2202:2204, 1/BA/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.18 | |
| IL_4V6Z_148 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.12 | |
| IL_4V6Z_149 | 1/BA/2401:2403, 1/BA/2414:2415 | No text annotation Not in a motif group | ||
| IL_4V6Z_150 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform Not in a motif group | homologous IL_4WF9_090 IL_27635.5 | |
| IL_4V6Z_151 | 1/BA/2457:2459, 1/BA/2493:2494 | Major groove platform Not in a motif group | geometric IL_7A0S_088 IL_76223.4 | |
| IL_4V6Z_152 | 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_337 IL_47499.1 | |
| IL_4V6Z_153 | 1/BA/2466:2470, 1/BA/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_93820.1 | |
| IL_4V6Z_154 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 NA | |
| IL_4V6Z_155 | 1/BA/2509:2512, 1/BA/2574:2579 | Double sheared Not in a motif group | geometric IL_3D0U_002 IL_09705.12 | |
| IL_4V6Z_156 | 1/BA/2512:2513, 1/BA/2571:2574 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_24807.1 | |
| IL_4V6Z_157 | 1/BA/2522:2523, 1/BA/2540:2543 | No text annotation Not in a motif group | ||
| IL_4V6Z_158 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A Not in a motif group | homologous IL_5J7L_344 IL_37497.8 | |
| IL_4V6Z_159 | 1/BA/2636:2640, 1/BA/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.2 | |
| IL_4V6Z_160 | 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_5J7L_346 IL_16458.2 | |
| IL_4V6Z_161 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 NA | |
| IL_4V6Z_162 | 1/BA/2687:2691, 1/BA/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 NA | |
| IL_4V6Z_163 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_24807.1 | |
| IL_4V6Z_164 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.7 | |
| IL_4V6Z_165 | 1/BA/2806:2811, 1/BA/2889:2892 | No text annotation Not in a motif group | homologous IL_5J7L_351 IL_49460.2 | |
| IL_4V6Z_166 | 1/BA/2838:2839, 1/BA/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_4WF9_106 IL_92880.1 | |
| IL_4V6Z_167 | 1/BA/2843:2846, 1/BA/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 NA | |
| IL_4V6Z_186 | 1/BA/2847:2852, 1/BA/2865:2869 | No text annotation Not in a motif group | ||
| IL_4V6Z_169 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 NA | |
| IL_4V6Z_170 | 1/BB/23:28, 1/BB/56:60 | No text annotation Not in a motif group | homologous IL_7A0S_103 IL_18472.2 | |
| IL_4V6Z_171 | 1/BB/30:31, 1/BB/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_357 IL_09061.10 | |
| IL_4V6Z_172 | 1/BB/34:38, 1/BB/44:48 | No text annotation Not in a motif group | ||
| IL_4V6Z_173 | 1/BB/71:79, 1/BB/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6Z_060 | Tandem non-canonical cWW pairs | ||
| IL_4V6Z_061 | No text annotation | ||
| IL_4V6Z_064 | No text annotation | ||
| IL_4V6Z_091 | Isolated non-canonical cWW with bulges | ||
| IL_4V6Z_100 | Kink-turn | ||
| IL_4V6Z_107 | No text annotation | ||
| IL_4V6Z_142 | No text annotation | ||
| IL_4V6Z_144 | Multiple bulged bases | ||
| IL_4V6Z_145 | No text annotation | ||
| IL_4V6Z_146 | No text annotation | ||
| IL_4V6Z_168 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V6Z_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation Not in a motif group | homologous J3_6CZR_015 NA | |
| J3_4V6Z_024 | 1/AA/46:52, 1/AA/359:367, 1/AA/393:395 | No text annotation Not in a motif group | ||
| J3_4V6Z_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA | |
| J3_4V6Z_025 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation Not in a motif group | ||
| J3_4V6Z_026 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation Not in a motif group | ||
| J3_4V6Z_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_4V6Z_027 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation Not in a motif group | ||
| J3_4V6Z_005 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_4V6Z_006 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation Not in a motif group | ||
| J3_4V6Z_007 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_4V6Z_028 | 1/AA/990:999, 1/AA/1041:1047, 1/AA/1210:1215 | No text annotation Not in a motif group | ||
| J3_4V6Z_008 | 1/AA/1003:1006, 1/AA/1023:1027, 1/AA/1034:1037 | No text annotation Not in a motif group | ||
| J3_4V6Z_009 | 1/AA/1063:1068, 1/AA/1107:1114, 1/AA/1186:1193 | No text annotation Not in a motif group | ||
| J3_4V6Z_029 | 1/AA/1063:1068, 1/AA/1107:1116, 1/AA/1184:1193 | No text annotation Not in a motif group | ||
| J3_4V6Z_010 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_4V6Z_011 | 1/AA/1116:1118, 1/AA/1155:1158, 1/AA/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_4V6Z_030 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation Not in a motif group | ||
| J3_4V6Z_031 | 1/AA/1237:1241, 1/AA/1296:1308, 1/AA/1329:1337 | No text annotation Not in a motif group | ||
| J3_4V6Z_032 | 1/BA/24:31, 1/BA/474:481, 1/BA/509:516 | No text annotation Not in a motif group | ||
| J3_4V6Z_033 | 1/BA/24:31, 1/BA/474:484, 1/BA/496:516 | No text annotation Not in a motif group | ||
| J3_4V6Z_034 | 1/BA/32:35, 1/BA/445:461, 1/BA/468:473 | No text annotation Not in a motif group | ||
| J3_4V6Z_012 | 1/BA/56:57, 1/BA/70:77, 1/BA/109:114 | No text annotation Not in a motif group | ||
| J3_4V6Z_035 | 1/BA/297:301, 1/BA/316:325, 1/BA/337:341 | No text annotation Not in a motif group | ||
| J3_4V6Z_013 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_4V6Z_014 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_4V6Z_015 | 1/BA/1055:1057, 1/BA/1081:1087, 1/BA/1102:1104 | No text annotation Not in a motif group | homologous J3_6PRV_001 NA | |
| J3_4V6Z_016 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_4V6Z_017 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation Not in a motif group | homologous J3_5J7L_042 NA | |
| J3_4V6Z_036 | 1/BA/1310:1314, 1/BA/1338:1345, 1/BA/1601:1604 | No text annotation Not in a motif group | ||
| J3_4V6Z_037 | 1/BA/1313:1314, 1/BA/1338:1345, 1/BA/1601:1603 | No text annotation Not in a motif group | ||
| J3_4V6Z_038 | 1/BA/1424:1429, 1/BA/1564:1565, 1/BA/1568:1574 | No text annotation Not in a motif group | ||
| J3_4V6Z_018 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_4V6Z_039 | 1/BA/2282:2284, 1/BA/2384:2395, 1/BA/2421:2427 | No text annotation Not in a motif group | ||
| J3_4V6Z_019 | 1/BA/2295:2299, 1/BA/2317:2323, 1/BA/2332:2337 | No text annotation Not in a motif group | ||
| J3_4V6Z_020 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_4V6Z_021 | 1/BA/2789:2791, 1/BA/2805:2806, 1/BA/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_4V6Z_022 | 1/BA/2812:2815, 1/BA/2831:2836, 1/BA/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
| J3_4V6Z_023 | 1/BB/10:16, 1/BB/68:70, 1/BB/106:110 | No text annotation Not in a motif group | ||
| J4_4V6Z_001 | 1/A1/7:10, 1/A1/25:27, 1/A1/43:49, 1/A1/65:66 | No text annotation Not in a motif group | ||
| J4_4V6Z_002 | 1/A3/7:10, 1/A3/26:29, 1/A3/43:50, 1/A3/66:67 | No text annotation Not in a motif group | ||
| J4_4V6Z_003 | 1/AA/115:122, 1/AA/239:240, 1/AA/286:289, 1/AA/311:312 | No text annotation Not in a motif group | ||
| J4_4V6Z_004 | 1/AA/142:144, 1/AA/178:184, 1/AA/193:198, 1/AA/219:221 | No text annotation Not in a motif group | ||
| J4_4V6Z_005 | 1/AA/575:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:880 | No text annotation Not in a motif group | ||
| J4_4V6Z_006 | 1/BA/268:269, 1/BA/370:375, 1/BA/399:406, 1/BA/421:424 | No text annotation Not in a motif group | ||
| J4_4V6Z_007 | 1/BA/297:301, 1/BA/316:319, 1/BA/323:325, 1/BA/337:341 | No text annotation Not in a motif group | ||
| J4_4V6Z_008 | 1/BA/601:604, 1/BA/624:628, 1/BA/635:638, 1/BA/650:656 | No text annotation Not in a motif group | ||
| J4_4V6Z_009 | 1/BA/1270:1276, 1/BA/1294:1295, 1/BA/1645:1648, 1/BA/2009:2010 | No text annotation Not in a motif group | ||
| J4_4V6Z_010 | 1/BA/1346:1350, 1/BA/1381:1385, 1/BA/1402:1405, 1/BA/1597:1600 | No text annotation Not in a motif group | ||
| J4_4V6Z_011 | 1/BA/1444:1445, 1/BA/1466:1467, 1/BA/1525:1526, 1/BA/1546:1547 | No text annotation Not in a motif group | ||
| J4_4V6Z_012 | 1/BA/1771:1776, 1/BA/1788:1792, 1/BA/1827:1830, 1/BA/1975:1980 | No text annotation Not in a motif group | ||
| J4_4V6Z_013 | 1/BA/1833:1835, 1/BA/1905:1906, 1/BA/1924:1933, 1/BA/1967:1972 | No text annotation Not in a motif group | ||
| J4_4V6Z_014 | 1/BA/2285:2289, 1/BA/2343:2347, 1/BA/2370:2372, 1/BA/2381:2383 | No text annotation Not in a motif group | ||
| J4_4V6Z_015 | 1/BA/2643:2647, 1/BA/2673:2676, 1/BA/2731:2735, 1/BA/2769:2771 | No text annotation Not in a motif group | ||
| J5_4V6Z_001 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:440, 1/AA/497:500, 1/AA/545:548 | No text annotation Not in a motif group | ||
| J5_4V6Z_002 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:442, 1/AA/492:500, 1/AA/545:548 | No text annotation Not in a motif group | ||
| J5_4V6Z_003 | 1/AA/58:61, 1/AA/106:113, 1/AA/314:316, 1/AA/337:339, 1/AA/350:354 | No text annotation Not in a motif group | ||
| J5_4V6Z_004 | 1/BA/47:54, 1/BA/116:121, 1/BA/130:131, 1/BA/148:150, 1/BA/176:178 | No text annotation Not in a motif group | ||
| J5_4V6Z_005 | 1/BA/531:533, 1/BA/560:564, 1/BA/577:579, 1/BA/1261:1262, 1/BA/2017:2018 | No text annotation Not in a motif group | ||
| J5_4V6Z_006 | 1/BA/584:589, 1/BA/668:671, 1/BA/809:812, 1/BA/1195:1196, 1/BA/1250:1256 | No text annotation Not in a motif group | ||
| J5_4V6Z_007 | 1/BA/1674:1682, 1/BA/1706:1707, 1/BA/1751:1752, 1/BA/1756:1764, 1/BA/1988:1990 | No text annotation Not in a motif group | ||
| J5_4V6Z_008 | 1/BA/2057:2064, 1/BA/2446:2454, 1/BA/2498:2507, 1/BA/2582:2589, 1/BA/2605:2611 | No text annotation Not in a motif group | ||
| J5_4V6Z_009 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2260, 1/BA/2280:2282, 1/BA/2427:2435 | No text annotation Not in a motif group | ||
| J6_4V6Z_001 | 1/BA/45:46, 1/BA/179:184, 1/BA/212:224, 1/BA/231:235, 1/BA/262:266, 1/BA/426:433 | No text annotation Not in a motif group | ||
| J6_4V6Z_002 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2260, 1/BA/2280:2284, 1/BA/2384:2395, 1/BA/2421:2435 | No text annotation Not in a motif group | ||
| J7_4V6Z_001 | 1/BA/8:15, 1/BA/525:531, 1/BA/2018:2023, 1/BA/2040:2043, 1/BA/2625:2630, 1/BA/2788:2789, 1/BA/2894:2895 | No text annotation Not in a motif group | ||
| J7_4V6Z_002 | 1/BA/817:822, 1/BA/835:838, 1/BA/940:946, 1/BA/971:976, 1/BA/987:991, 1/BA/1163:1164, 1/BA/1185:1190 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V6Z_003 | No text annotation |
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