5J3C Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5J3C_001 | 1/QA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_5J3C_003 | 1/QA/158:163 | GNRA Not in a motif group | homologous HL_6CZR_074 HL_53845.1 | |
| HL_5J3C_004 | 1/QA/189D:189I | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_10278.1 | |
| HL_5J3C_005 | 1/QA/200:217 | No text annotation Not in a motif group | homologous HL_6CZR_076 HL_34168.2 | |
| HL_5J3C_006 | 1/QA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_5J3C_007 | 1/QA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_5J3C_008 | 1/QA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_5J3C_009 | 1/QA/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_5J3C_010 | 1/QA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_5J3C_011 | 1/QA/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_5J3C_012 | 1/QA/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_5J3C_013 | 1/QA/521:528 | No text annotation Not in a motif group | homologous HL_4LFB_013 NA | |
| HL_5J3C_014 | 1/QA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_5J3C_015 | 1/QA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_5J3C_016 | 1/QA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_5J3C_017 | 1/QA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_5J3C_018 | 1/QA/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_53837.1 | |
| HL_5J3C_019 | 1/QA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_5J3C_020 | 1/QA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_5J3C_021 | 1/QA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_5J3C_022 | 1/QA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_5J3C_023 | 1/QA/1028:1033 | No text annotation Not in a motif group | ||
| HL_5J3C_024 | 1/QA/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_5J3C_025 | 1/QA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_5J3C_026 | 1/QA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_5J3C_027 | 1/QA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_5J3C_028 | 1/QA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_5J3C_029 | 1/QA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_5J3C_030 | 1/QA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_5J3C_031 | 1/QA/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
| HL_5J3C_032 | 1/QA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_5J3C_033 | 1/QV/13:22 | No text annotation Not in a motif group | homologous HL_4TUE_033 HL_25462.2 | |
| HL_5J3C_034 | 1/QV/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4V9Q_214 HL_53597.2 | |
| HL_5J3C_035 | 1/QV/53:61 | No text annotation Not in a motif group | ||
| HL_5J3C_036 | 1/RA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_5J3C_037 | 1/RA/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_5J3C_038 | 1/RA/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
| HL_5J3C_039 | 1/RA/139A:142B | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_5J3C_041 | 1/RA/194:201 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_06192.2 | |
| HL_5J3C_042 | 1/RA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_5J3C_043 | 1/RA/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_5J3C_044 | 1/RA/272I:272O | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.2 | |
| HL_5J3C_045 | 1/RA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_5J3C_046 | 1/RA/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_5J3C_047 | 1/RA/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
| HL_5J3C_048 | 1/RA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_5J3C_049 | 1/RA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_5J3C_050 | 1/RA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_5J3C_051 | 1/RA/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_5J3C_053 | 1/RA/566:575 | No text annotation Not in a motif group | homologous HL_7RQB_018 HL_89380.2 | |
| HL_5J3C_054 | 1/RA/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
| HL_5J3C_055 | 1/RA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_5J3C_056 | 1/RA/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.1 | |
| HL_5J3C_057 | 1/RA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_5J3C_058 | 1/RA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_5J3C_059 | 1/RA/779:785 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_74322.1 | |
| HL_5J3C_060 | 1/RA/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_5J3C_061 | 1/RA/884:892 | No text annotation Not in a motif group | homologous HL_7RQB_026 HL_27930.1 | |
| HL_5J3C_062 | 1/RA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_5J3C_063 | 1/RA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_5J3C_065 | 1/RA/1091:1100 | No text annotation Not in a motif group | ||
| HL_5J3C_066 | 1/RA/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_5J3C_067 | 1/RA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_5J3C_068 | 1/RA/1324:1330 | No text annotation Not in a motif group | geometric HL_7RQB_034 HL_46680.1 | |
| HL_5J3C_069 | 1/RA/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_5J3C_070 | 1/RA/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_5J3C_071 | 1/RA/1451:1459 | No text annotation Not in a motif group | geometric HL_7RQB_037 HL_32426.1 | |
| HL_5J3C_072 | 1/RA/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_5J3C_074 | 1/RA/1565:1568 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_5J3C_075 | 1/RA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_5J3C_076 | 1/RA/1631A:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_5J3C_077 | 1/RA/1691:1696 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_03562.2 | |
| HL_5J3C_078 | 1/RA/1720:1742 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_5J3C_079 | 1/RA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_5J3C_080 | 1/RA/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_5J3C_081 | 1/RA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_5J3C_082 | 1/RA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_5J3C_083 | 1/RA/1909:1921 | No text annotation Not in a motif group | homologous HL_7RQB_048 NA | |
| HL_5J3C_084 | 1/RA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_5J3C_085 | 1/RA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_5J3C_086 | 1/RA/2143:2148 | No text annotation Not in a motif group | homologous HL_7RQB_051 NA | |
| HL_5J3C_087 | 1/RA/2205:2219 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_98426.1 | |
| HL_5J3C_088 | 1/RA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_5J3C_089 | 1/RA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_5J3C_090 | 1/RA/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_5J3C_091 | 1/RA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_5J3C_092 | 1/RA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_5J3C_093 | 1/RA/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
| HL_5J3C_094 | 1/RA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_5J3C_095 | 1/RA/2471:2479 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_06192.2 | |
| HL_5J3C_096 | 1/RA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_5J3C_097 | 1/RA/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_5J3C_098 | 1/RA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_5J3C_099 | 1/RA/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_5J3C_100 | 1/RA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_5J3C_101 | 1/RA/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_5J3C_103 | 1/RA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_5J3C_104 | 1/RA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_5J3C_105 | 1/RB/38:44 | No text annotation Not in a motif group | homologous HL_7RQB_070 HL_87939.1 | |
| HL_5J3C_106 | 1/RB/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_42097.1 | |
| HL_5J3C_107 | 1/XA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_5J3C_109 | 1/XA/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_5J3C_110 | 1/XA/189D:189I | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_10278.1 | |
| HL_5J3C_111 | 1/XA/200:217 | No text annotation Not in a motif group | homologous HL_6CZR_076 HL_34168.2 | |
| HL_5J3C_112 | 1/XA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_5J3C_113 | 1/XA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_5J3C_114 | 1/XA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_5J3C_115 | 1/XA/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_5J3C_116 | 1/XA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_5J3C_117 | 1/XA/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_5J3C_118 | 1/XA/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_5J3C_119 | 1/XA/521:528 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_5J3C_120 | 1/XA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_5J3C_121 | 1/XA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_5J3C_122 | 1/XA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_5J3C_123 | 1/XA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_5J3C_124 | 1/XA/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_53837.1 | |
| HL_5J3C_125 | 1/XA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_5J3C_126 | 1/XA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_5J3C_127 | 1/XA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_5J3C_128 | 1/XA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_5J3C_129 | 1/XA/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_5J3C_130 | 1/XA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_5J3C_131 | 1/XA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_5J3C_132 | 1/XA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_5J3C_133 | 1/XA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_5J3C_134 | 1/XA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_5J3C_135 | 1/XA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_5J3C_136 | 1/XA/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
| HL_5J3C_137 | 1/XA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_5J3C_138 | 1/XV/13:22 | No text annotation Not in a motif group | homologous HL_1QF6_001 NA | |
| HL_5J3C_139 | 1/XV/31:39 | No text annotation Not in a motif group | homologous HL_6CFJ_107 NA | |
| HL_5J3C_140 | 1/XV/52:62 | No text annotation Not in a motif group | homologous HL_4V7M_040 HL_22031.1 | |
| HL_5J3C_141 | 1/YA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_5J3C_142 | 1/YA/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_5J3C_143 | 1/YA/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
| HL_5J3C_144 | 1/YA/139A:142B | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_5J3C_146 | 1/YA/194:201 | No text annotation Not in a motif group | homologous HL_7RQB_006 HL_06192.2 | |
| HL_5J3C_147 | 1/YA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_5J3C_148 | 1/YA/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_5J3C_149 | 1/YA/272I:272O | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.2 | |
| HL_5J3C_150 | 1/YA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_5J3C_151 | 1/YA/319:323 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_75407.1 | |
| HL_5J3C_152 | 1/YA/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
| HL_5J3C_153 | 1/YA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_5J3C_154 | 1/YA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_5J3C_155 | 1/YA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_5J3C_156 | 1/YA/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_5J3C_158 | 1/YA/566:575 | No text annotation Not in a motif group | homologous HL_7RQB_018 HL_89380.2 | |
| HL_5J3C_159 | 1/YA/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
| HL_5J3C_160 | 1/YA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_5J3C_161 | 1/YA/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.1 | |
| HL_5J3C_162 | 1/YA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_5J3C_163 | 1/YA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_5J3C_164 | 1/YA/779:785 | No text annotation Not in a motif group | homologous HL_5J7L_156 HL_74322.1 | |
| HL_5J3C_165 | 1/YA/826:831 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_64365.1 | |
| HL_5J3C_166 | 1/YA/884:892 | No text annotation Not in a motif group | homologous HL_7RQB_026 HL_27930.1 | |
| HL_5J3C_167 | 1/YA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_5J3C_168 | 1/YA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_5J3C_170 | 1/YA/1091:1100 | No text annotation Not in a motif group | ||
| HL_5J3C_171 | 1/YA/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_5J3C_172 | 1/YA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_5J3C_173 | 1/YA/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_5J3C_174 | 1/YA/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_5J3C_175 | 1/YA/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_5J3C_176 | 1/YA/1451:1459 | No text annotation Not in a motif group | geometric HL_7RQB_037 HL_32426.1 | |
| HL_5J3C_177 | 1/YA/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_5J3C_179 | 1/YA/1565:1568 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_5J3C_180 | 1/YA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_5J3C_181 | 1/YA/1631A:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_5J3C_182 | 1/YA/1691:1696 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_03562.2 | |
| HL_5J3C_183 | 1/YA/1720:1742 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_5J3C_184 | 1/YA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_5J3C_185 | 1/YA/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_5J3C_186 | 1/YA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_5J3C_187 | 1/YA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_5J3C_188 | 1/YA/1909:1921 | No text annotation Not in a motif group | homologous HL_7RQB_048 NA | |
| HL_5J3C_189 | 1/YA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_5J3C_190 | 1/YA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_5J3C_191 | 1/YA/2143:2148 | No text annotation Not in a motif group | homologous HL_7RQB_051 NA | |
| HL_5J3C_192 | 1/YA/2205:2219 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_98426.1 | |
| HL_5J3C_193 | 1/YA/2248:2256 | No text annotation Not in a motif group | homologous HL_4WF9_049 HL_53171.2 | |
| HL_5J3C_194 | 1/YA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_5J3C_195 | 1/YA/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_5J3C_196 | 1/YA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_5J3C_197 | 1/YA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_5J3C_198 | 1/YA/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
| HL_5J3C_199 | 1/YA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_5J3C_200 | 1/YA/2471:2479 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_06192.2 | |
| HL_5J3C_201 | 1/YA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_5J3C_202 | 1/YA/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_5J3C_203 | 1/YA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_5J3C_204 | 1/YA/2658:2663 | GNRA Not in a motif group | geometric HL_5J7L_197 HL_42097.1 | |
| HL_5J3C_205 | 1/YA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_5J3C_206 | 1/YA/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_5J3C_208 | 1/YA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_5J3C_209 | 1/YA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_5J3C_210 | 1/YB/38:44 | No text annotation Not in a motif group | geometric HL_7RQB_070 HL_87939.1 | |
| HL_5J3C_211 | 1/YB/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5J3C_002 | No text annotation | ||
| HL_5J3C_040 | No text annotation | ||
| HL_5J3C_052 | No text annotation | ||
| HL_5J3C_064 | No text annotation | ||
| HL_5J3C_073 | No text annotation | ||
| HL_5J3C_102 | No text annotation | ||
| HL_5J3C_108 | No text annotation | ||
| HL_5J3C_145 | No text annotation | ||
| HL_5J3C_157 | No text annotation | ||
| HL_5J3C_169 | No text annotation | ||
| HL_5J3C_178 | No text annotation | ||
| HL_5J3C_207 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5J3C_001 | 1/QA/30:32, 1/QA/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_5J3C_002 | 1/QA/44:45, 1/QA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_5J3C_003 | 1/QA/47:52, 1/QA/359:361 | No text annotation Not in a motif group | geometric IL_4LFB_003 IL_11178.1 | |
| IL_5J3C_004 | 1/QA/54:56, 1/QA/356:357 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_93353.1 | |
| IL_5J3C_005 | 1/QA/63:66, 1/QA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_5J3C_006 | 1/QA/67:69, 1/QA/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_5J3C_007 | 1/QA/129A:131, 1/QA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_5J3C_008 | 1/QA/132:136, 1/QA/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_5J3C_009 | 1/QA/148:153, 1/QA/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_5J3C_010 | 1/QA/186:188, 1/QA/189M:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_5J3C_011 | 1/QA/242:247, 1/QA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_5J3C_012 | 1/QA/249:252, 1/QA/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_5J3C_013 | 1/QA/292:293, 1/QA/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_5J3C_014 | 1/QA/367:369, 1/QA/392:393 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.13 | |
| IL_5J3C_015 | 1/QA/371:375, 1/QA/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_5J3C_016 | 1/QA/375:376, 1/QA/387:389 | Single bulged G Not in a motif group | homologous IL_4LFB_016 IL_00225.2 | |
| IL_5J3C_017 | 1/QA/409:416, 1/QA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_5J3C_018 | 1/QA/446:450, 1/QA/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4LFB_018 IL_88269.3 | |
| IL_5J3C_019 | 1/QA/450:456, 1/QA/475:483 | No text annotation Not in a motif group | homologous IL_6CZR_131 IL_30149.1 | |
| IL_5J3C_020 | 1/QA/504:511, 1/QA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_5J3C_021 | 1/QA/515:521, 1/QA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_5J3C_022 | 1/QA/569:575, 1/QA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_5J3C_023 | 1/QA/580:584, 1/QA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_5J3C_024 | 1/QA/594:596, 1/QA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_5J3C_025 | 1/QA/597:598, 1/QA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_5J3C_026 | 1/QA/605:612, 1/QA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_5J3C_027 | 1/QA/654:655, 1/QA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_5J3C_028 | 1/QA/657:658, 1/QA/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_5J3C_029 | 1/QA/662:666, 1/QA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_5J3C_030 | 1/QA/673:678, 1/QA/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_5J3C_031 | 1/QA/683:688, 1/QA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_5J3C_032 | 1/QA/774:778, 1/QA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_5J3C_033 | 1/QA/779:783, 1/QA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_5J3C_034 | 1/QA/887:894, 1/QA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_5J3C_035 | 1/QA/922:923, 1/QA/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_5J3C_036 | 1/QA/925:927, 1/QA/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_5J3C_037 | 1/QA/933:935, 1/QA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_5J3C_038 | 1/QA/953:954, 1/QA/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_5J3C_039 | 1/QA/993:997, 1/QA/1044:1045 | Minor groove platform Not in a motif group | homologous IL_6CZR_151 IL_47078.1 | |
| IL_5J3C_040 | 1/QA/1048:1050, 1/QA/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_5J3C_041 | 1/QA/1050:1052, 1/QA/1206:1208 | No text annotation Not in a motif group | geometric IL_2ZNI_001 IL_51629.2 | |
| IL_5J3C_042 | 1/QA/1052:1056, 1/QA/1204:1206 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
| IL_5J3C_043 | 1/QA/1057:1058, 1/QA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_5J3C_044 | 1/QA/1060:1061, 1/QA/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.13 | |
| IL_5J3C_045 | 1/QA/1061:1063, 1/QA/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_5J3C_046 | 1/QA/1124:1127, 1/QA/1145:1149 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.6 | |
| IL_5J3C_047 | 1/QA/1129:1132, 1/QA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_4LFB_049 IL_15052.1 | |
| IL_5J3C_048 | 1/QA/1247:1253, 1/QA/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_5J3C_049 | 1/QA/1255:1258, 1/QA/1277:1282 | No text annotation Not in a motif group | homologous IL_6CZR_161 IL_75461.4 | |
| IL_5J3C_050 | 1/QA/1259:1260, 1/QA/1274:1276 | Not an internal loop Not in a motif group | geometric IL_4LFB_053 IL_93353.1 | |
| IL_5J3C_051 | 1/QA/1260:1262, 1/QA/1273:1274 | Minor groove platform Not in a motif group | homologous IL_4LFB_054 IL_93353.1 | |
| IL_5J3C_052 | 1/QA/1303:1308, 1/QA/1329:1334 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_5J3C_053 | 1/QA/1399:1401, 1/QA/1501:1504 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
| IL_5J3C_054 | 1/QA/1401:1405, 1/QA/1496:1501 | No text annotation Not in a motif group | ||
| IL_5J3C_055 | 1/QA/1405:1409, 1/QA/1491:1496 | No text annotation Not in a motif group | homologous IL_5J7L_060 NA | |
| IL_5J3C_056 | 1/QA/1412:1415, 1/QA/1485:1488 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_6CZR_168 IL_67743.1 | |
| IL_5J3C_057 | 1/QA/1416:1419, 1/QA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_5J3C_058 | 1/QA/1431:1435, 1/QA/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.1 | |
| IL_5J3C_059 | 1/QA/1435:1437, 1/QA/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_5J3C_060 | 1/QA/1440:1443, 1/QA/1459:1461 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.2 | |
| IL_5J3C_061 | 1/RA/24:30, 1/RA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_5J3C_062 | 1/RA/36:37, 1/RA/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_5J3C_063 | 1/RA/42:44, 1/RA/433:436 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_18471.2 | |
| IL_5J3C_064 | 1/RA/81:85, 1/RA/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_5J3C_065 | 1/RA/183:184, 1/RA/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_5J3C_066 | 1/RA/188:194, 1/RA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_5J3C_067 | 1/RA/239:245, 1/RA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_5J3C_068 | 1/RA/273E:273F, 1/RA/363F:364 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_27635.1 | |
| IL_5J3C_069 | 1/RA/273K:279, 1/RA/361:363A | No text annotation Not in a motif group | ||
| IL_5J3C_070 | 1/RA/280:284, 1/RA/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
| IL_5J3C_071 | 1/RA/288:290, 1/RA/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_5J3C_072 | 1/RA/293:295, 1/RA/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_5J3C_073 | 1/RA/481:484, 1/RA/496:509 | No text annotation Not in a motif group | geometric IL_7RQB_014 IL_60992.6 | |
| IL_5J3C_074 | 1/RA/564:566, 1/RA/575:577 | No text annotation Not in a motif group | geometric IL_7RQB_015 IL_95997.1 | |
| IL_5J3C_075 | 1/RA/606:610, 1/RA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_5J3C_076 | 1/RA/672:674, 1/RA/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_5J3C_077 | 1/RA/674:678, 1/RA/799:806 | No text annotation Not in a motif group | homologous IL_7RQB_018 IL_17470.6 | |
| IL_5J3C_078 | 1/RA/697:698, 1/RA/763:765 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_37497.2 | |
| IL_5J3C_079 | 1/RA/702:703, 1/RA/728:730 | Single bulged G Not in a motif group | geometric IL_7RQB_020 IL_00225.2 | |
| IL_5J3C_080 | 1/RA/703:707, 1/RA/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_5J3C_081 | 1/RA/738:741, 1/RA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_5J3C_082 | 1/RA/775:777, 1/RA/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.6 | |
| IL_5J3C_083 | 1/RA/837:838, 1/RA/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_5J3C_084 | 1/RA/844:846, 1/RA/931:934 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 IL_52767.2 | |
| IL_5J3C_085 | 1/RA/846:850, 1/RA/927:931 | No text annotation Not in a motif group | geometric IL_7RQB_026 IL_94165.1 | |
| IL_5J3C_086 | 1/RA/858:862, 1/RA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_7RQB_027 IL_38862.1 | |
| IL_5J3C_087 | 1/RA/862:863, 1/RA/913:915 | Minor groove platform Not in a motif group | geometric IL_4V9F_034 IL_42622.2 | |
| IL_5J3C_088 | 1/RA/864:868, 1/RA/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_5J3C_089 | 1/RA/870:872, 1/RA/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 IL_52767.2 | |
| IL_5J3C_090 | 1/RA/875:877, 1/RA/899:902 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
| IL_5J3C_091 | 1/RA/877:879, 1/RA/898:899 | Minor groove platform Not in a motif group | homologous IL_7RQB_032 IL_93353.1 | |
| IL_5J3C_092 | 1/RA/880:881, 1/RA/895:897 | Single bulged A Not in a motif group | homologous IL_7RQB_033 IL_37497.2 | |
| IL_5J3C_093 | 1/RA/952:954, 1/RA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_5J3C_094 | 1/RA/994:996, 1/RA/1159:1160 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_5J3C_095 | 1/RA/998:1002, 1/RA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_5J3C_096 | 1/RA/1004:1011, 1/RA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.7 | |
| IL_5J3C_097 | 1/RA/1011:1013, 1/RA/1149:1150 | Single bulged U Not in a motif group | homologous IL_7RQB_038 IL_83039.13 | |
| IL_5J3C_098 | 1/RA/1018:1024, 1/RA/1140:1144 | No text annotation Not in a motif group | geometric IL_7RQB_039 IL_57188.3 | |
| IL_5J3C_099 | 1/RA/1024:1030, 1/RA/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_5J3C_100 | 1/RA/1031:1034, 1/RA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_5J3C_101 | 1/RA/1043:1051, 1/RA/1108:1112 | No text annotation Not in a motif group | ||
| IL_5J3C_102 | 1/RA/1087:1091, 1/RA/1100:1102 | No text annotation Not in a motif group | homologous IL_7RQB_044 NA | |
| IL_5J3C_103 | 1/RA/1196:1198, 1/RA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.2 | |
| IL_5J3C_104 | 1/RA/1202:1206, 1/RA/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_5J3C_105 | 1/RA/1208:1215, 1/RA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_5J3C_106 | 1/RA/1219:1221A, 1/RA/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_5J3C_107 | 1/RA/1262:1269, 1/RA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_5J3C_108 | 1/RA/1310:1313, 1/RA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_5J3C_109 | 1/RA/1319:1324, 1/RA/1330:1333 | C-loop with extra cWW pair Not in a motif group | geometric IL_4V88_408 IL_93630.2 | |
| IL_5J3C_110 | 1/RA/1351:1355, 1/RA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_5J3C_111 | 1/RA/1357:1361, 1/RA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_5J3C_112 | 1/RA/1415:1416, 1/RA/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_5J3C_113 | 1/RA/1417:1421, 1/RA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
| IL_5J3C_114 | 1/RA/1433:1435, 1/RA/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_5J3C_115 | 1/RA/1437:1440, 1/RA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_5J3C_116 | 1/RA/1448:1450A, 1/RA/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
| IL_5J3C_117 | 1/RA/1450B:1451, 1/RA/1459:1461 | Single bulged A Not in a motif group | homologous IL_7RQB_059 IL_37497.2 | |
| IL_5J3C_118 | 1/RA/1469:1473, 1/RA/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_5J3C_119 | 1/RA/1481:1482, 1/RA/1506:1510 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_5J3C_120 | 1/RA/1489:1491, 1/RA/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_5J3C_121 | 1/RA/1526:1529, 1/RA/1540:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_02656.1 | |
| IL_5J3C_122 | 1/RA/1651:1656, 1/RA/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_5J3C_123 | 1/RA/1663:1665, 1/RA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_5J3C_124 | 1/RA/1666:1669, 1/RA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
| IL_5J3C_125 | 1/RA/1669:1674, 1/RA/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_7RQB_067 IL_82842.2 | |
| IL_5J3C_126 | 1/RA/1686:1691, 1/RA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_5J3C_127 | 1/RA/1770:1771, 1/RA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_5J3C_128 | 1/RA/1798:1804, 1/RA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_5J3C_129 | 1/RA/1837:1840, 1/RA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_5J3C_130 | 1/RA/1841:1842, 1/RA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 IL_16396.2 | |
| IL_5J3C_131 | 1/RA/1846:1849, 1/RA/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_5J3C_132 | 1/RA/1851:1855, 1/RA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_5J3C_133 | 1/RA/1856:1860, 1/RA/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_5J3C_134 | 1/RA/1933:1934, 1/RA/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 IL_59677.2 | |
| IL_5J3C_135 | 1/RA/1934:1945, 1/RA/1961:1964 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_5J3C_136 | 1/RA/2050:2052, 1/RA/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_5J3C_137 | 1/RA/2054:2057, 1/RA/2611:2615 | No text annotation Not in a motif group | ||
| IL_5J3C_138 | 1/RA/2067:2069, 1/RA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_5J3C_139 | 1/RA/2070:2071, 1/RA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_5J3C_140 | 1/RA/2081:2083, 1/RA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_5J3C_141 | 1/RA/2085:2087, 1/RA/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_5J3C_142 | 1/RA/2108:2110, 1/RA/2179:2181 | No text annotation Not in a motif group | geometric IL_4PCJ_001 IL_95997.1 | |
| IL_5J3C_143 | 1/RA/2110:2120, 1/RA/2178:2179 | No text annotation Not in a motif group | homologous IL_3U4M_002 IL_45944.3 | |
| IL_5J3C_144 | 1/RA/2124:2127, 1/RA/2161:2174 | No text annotation Not in a motif group | homologous IL_7RQB_086 NA | |
| IL_5J3C_145 | 1/RA/2129:2138, 1/RA/2153:2159 | No text annotation Not in a motif group | ||
| IL_5J3C_146 | 1/RA/2297:2299, 1/RA/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_088 IL_38958.7 | |
| IL_5J3C_147 | 1/RA/2350:2353, 1/RA/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_5J3C_148 | 1/RA/2401:2403, 1/RA/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
| IL_5J3C_149 | 1/RA/2453:2454, 1/RA/2498:2500 | Single stack bend Not in a motif group | homologous IL_7RQB_091 IL_76488.2 | |
| IL_5J3C_150 | 1/RA/2454:2455, 1/RA/2496:2498 | Major groove platform Not in a motif group | geometric IL_7RQB_092 IL_27635.1 | |
| IL_5J3C_151 | 1/RA/2457:2459, 1/RA/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_5J3C_152 | 1/RA/2459:2461, 1/RA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_5J3C_153 | 1/RA/2466:2470, 1/RA/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_5J3C_154 | 1/RA/2507:2508, 1/RA/2580:2582 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_5J3C_155 | 1/RA/2510:2512, 1/RA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
| IL_5J3C_156 | 1/RA/2512:2513, 1/RA/2571:2574 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 IL_71530.2 | |
| IL_5J3C_157 | 1/RA/2522:2523, 1/RA/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
| IL_5J3C_158 | 1/RA/2588:2590, 1/RA/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_5J3C_159 | 1/RA/2591:2592, 1/RA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_5J3C_160 | 1/RA/2636:2640, 1/RA/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_5J3C_161 | 1/RA/2652:2658, 1/RA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 IL_16458.1 | |
| IL_5J3C_162 | 1/RA/2680:2684, 1/RA/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_5J3C_163 | 1/RA/2687:2691, 1/RA/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_5J3C_164 | 1/RA/2695:2696, 1/RA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
| IL_5J3C_165 | 1/RA/2737:2742, 1/RA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_5J3C_166 | 1/RA/2838:2839, 1/RA/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_5J3C_167 | 1/RA/2843:2846, 1/RA/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_5J3C_168 | 1/RA/2847:2852, 1/RA/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_5J3C_169 | 1/RB/17:18, 1/RB/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_5J3C_171 | 1/RB/30:31, 1/RB/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_5J3C_172 | 1/RB/34:38, 1/RB/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_5J3C_173 | 1/RB/71:79, 1/RB/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_5J3C_174 | 1/XA/30:32, 1/XA/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_5J3C_175 | 1/XA/44:45, 1/XA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_5J3C_176 | 1/XA/47:52, 1/XA/359:361 | No text annotation Not in a motif group | geometric IL_4LFB_003 IL_11178.1 | |
| IL_5J3C_177 | 1/XA/54:56, 1/XA/356:357 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_93353.1 | |
| IL_5J3C_178 | 1/XA/63:66, 1/XA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_5J3C_179 | 1/XA/67:69, 1/XA/100:102 | No text annotation Not in a motif group | homologous IL_6CZR_118 IL_95997.1 | |
| IL_5J3C_180 | 1/XA/129A:131, 1/XA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_5J3C_181 | 1/XA/132:136, 1/XA/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_5J3C_182 | 1/XA/148:153, 1/XA/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_5J3C_183 | 1/XA/186:188, 1/XA/189M:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_5J3C_184 | 1/XA/242:247, 1/XA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_5J3C_185 | 1/XA/249:252, 1/XA/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_5J3C_186 | 1/XA/292:293, 1/XA/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_5J3C_187 | 1/XA/367:369, 1/XA/392:393 | Single bulged U Not in a motif group | geometric IL_4LFB_014 IL_83039.13 | |
| IL_5J3C_188 | 1/XA/371:375, 1/XA/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_5J3C_189 | 1/XA/375:376, 1/XA/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.2 | |
| IL_5J3C_190 | 1/XA/409:416, 1/XA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_5J3C_191 | 1/XA/446:450, 1/XA/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_5J3C_192 | 1/XA/450:455, 1/XA/476:483 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
| IL_5J3C_193 | 1/XA/504:511, 1/XA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_5J3C_194 | 1/XA/515:521, 1/XA/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_5J3C_195 | 1/XA/569:575, 1/XA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_5J3C_196 | 1/XA/580:584, 1/XA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_5J3C_197 | 1/XA/594:596, 1/XA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_5J3C_198 | 1/XA/597:598, 1/XA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_5J3C_199 | 1/XA/605:612, 1/XA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_5J3C_200 | 1/XA/654:655, 1/XA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_5J3C_201 | 1/XA/657:658, 1/XA/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_5J3C_202 | 1/XA/662:666, 1/XA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_5J3C_203 | 1/XA/673:678, 1/XA/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_5J3C_204 | 1/XA/683:688, 1/XA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_5J3C_205 | 1/XA/774:778, 1/XA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_5J3C_206 | 1/XA/779:783, 1/XA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_5J3C_207 | 1/XA/887:894, 1/XA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_5J3C_208 | 1/XA/922:923, 1/XA/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_5J3C_209 | 1/XA/925:927, 1/XA/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_5J3C_210 | 1/XA/933:935, 1/XA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_5J3C_211 | 1/XA/953:954, 1/XA/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_5J3C_212 | 1/XA/993:997, 1/XA/1044:1045 | Minor groove platform Not in a motif group | homologous IL_4LFB_039 IL_47078.1 | |
| IL_5J3C_213 | 1/XA/1002:1006, 1/XA/1023:1038 | No text annotation Not in a motif group | ||
| IL_5J3C_214 | 1/XA/1048:1050, 1/XA/1208:1209 | Single bulged U Not in a motif group | geometric IL_4LFB_042 IL_83039.13 | |
| IL_5J3C_215 | 1/XA/1050:1052, 1/XA/1206:1208 | No text annotation Not in a motif group | homologous IL_4LFB_043 NA | |
| IL_5J3C_216 | 1/XA/1052:1056, 1/XA/1204:1206 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
| IL_5J3C_217 | 1/XA/1057:1058, 1/XA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_5J3C_218 | 1/XA/1060:1061, 1/XA/1195:1197 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.13 | |
| IL_5J3C_219 | 1/XA/1061:1063, 1/XA/1193:1195 | No text annotation Not in a motif group | homologous IL_4LFB_047 IL_95997.1 | |
| IL_5J3C_220 | 1/XA/1124:1127, 1/XA/1145:1149 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.6 | |
| IL_5J3C_221 | 1/XA/1129:1132, 1/XA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_4LFB_049 IL_15052.1 | |
| IL_5J3C_222 | 1/XA/1247:1253, 1/XA/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_5J3C_223 | 1/XA/1255:1258, 1/XA/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_5J3C_224 | 1/XA/1259:1260, 1/XA/1274:1276 | No text annotation Not in a motif group | ||
| IL_5J3C_225 | 1/XA/1260:1262, 1/XA/1273:1274 | No text annotation Not in a motif group | ||
| IL_5J3C_226 | 1/XA/1303:1308, 1/XA/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_5J3C_227 | 1/XA/1399:1401, 1/XA/1501:1504 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_5J3C_228 | 1/XA/1401:1405, 1/XA/1496:1501 | No text annotation Not in a motif group | homologous IL_4LFB_057 NA | |
| IL_5J3C_229 | 1/XA/1405:1409, 1/XA/1491:1496 | No text annotation Not in a motif group | ||
| IL_5J3C_230 | 1/XA/1412:1414, 1/XA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_5J3C_231 | 1/XA/1416:1419, 1/XA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_5J3C_232 | 1/XA/1431:1435, 1/XA/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.1 | |
| IL_5J3C_233 | 1/XA/1435:1437, 1/XA/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_5J3C_234 | 1/XA/1440:1443, 1/XA/1459:1461 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.2 | |
| IL_5J3C_235 | 1/YA/24:30, 1/YA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7RQB_001 IL_66414.6 | |
| IL_5J3C_236 | 1/YA/36:37, 1/YA/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_5J3C_237 | 1/YA/42:44, 1/YA/433:436 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_18471.2 | |
| IL_5J3C_238 | 1/YA/81:85, 1/YA/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_5J3C_239 | 1/YA/183:184, 1/YA/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_5J3C_240 | 1/YA/188:194, 1/YA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
| IL_5J3C_241 | 1/YA/239:245, 1/YA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_5J3C_242 | 1/YA/273E:273F, 1/YA/363F:364 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_27635.1 | |
| IL_5J3C_243 | 1/YA/273K:279, 1/YA/361:363A | No text annotation Not in a motif group | ||
| IL_5J3C_244 | 1/YA/280:284, 1/YA/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
| IL_5J3C_245 | 1/YA/288:290, 1/YA/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_5J3C_246 | 1/YA/293:295, 1/YA/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_5J3C_247 | 1/YA/481:484, 1/YA/496:509 | No text annotation Not in a motif group | geometric IL_7RQB_014 IL_60992.6 | |
| IL_5J3C_248 | 1/YA/564:566, 1/YA/575:577 | No text annotation Not in a motif group | geometric IL_7RQB_015 IL_95997.1 | |
| IL_5J3C_249 | 1/YA/606:610, 1/YA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_5J3C_250 | 1/YA/672:674, 1/YA/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_5J3C_251 | 1/YA/674:678, 1/YA/799:806 | No text annotation Not in a motif group | homologous IL_7RQB_018 IL_17470.6 | |
| IL_5J3C_252 | 1/YA/697:698, 1/YA/763:765 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_37497.2 | |
| IL_5J3C_253 | 1/YA/702:703, 1/YA/728:730 | Single bulged G Not in a motif group | geometric IL_7RQB_020 IL_00225.2 | |
| IL_5J3C_254 | 1/YA/703:707, 1/YA/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_5J3C_255 | 1/YA/738:741, 1/YA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_5J3C_256 | 1/YA/775:777, 1/YA/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.6 | |
| IL_5J3C_257 | 1/YA/837:838, 1/YA/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_5J3C_258 | 1/YA/844:846, 1/YA/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
| IL_5J3C_259 | 1/YA/846:850, 1/YA/927:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 IL_94165.1 | |
| IL_5J3C_260 | 1/YA/858:862, 1/YA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_7RQB_027 IL_38862.1 | |
| IL_5J3C_261 | 1/YA/862:863, 1/YA/913:915 | Minor groove platform Not in a motif group | geometric IL_7RQB_028 IL_42622.2 | |
| IL_5J3C_262 | 1/YA/864:868, 1/YA/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_5J3C_263 | 1/YA/870:872, 1/YA/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 IL_52767.2 | |
| IL_5J3C_264 | 1/YA/875:877, 1/YA/899:902 | Minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_031 IL_46796.1 | |
| IL_5J3C_265 | 1/YA/877:879, 1/YA/898:899 | Minor groove platform Not in a motif group | geometric IL_7RQB_032 IL_93353.1 | |
| IL_5J3C_266 | 1/YA/880:881, 1/YA/895:897 | Single bulged A Not in a motif group | homologous IL_7RQB_033 IL_37497.2 | |
| IL_5J3C_267 | 1/YA/952:954, 1/YA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_5J3C_268 | 1/YA/994:996, 1/YA/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_5J3C_269 | 1/YA/998:1002, 1/YA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_5J3C_270 | 1/YA/1004:1011, 1/YA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.7 | |
| IL_5J3C_271 | 1/YA/1011:1013, 1/YA/1149:1150 | Single bulged U Not in a motif group | homologous IL_7RQB_038 IL_83039.13 | |
| IL_5J3C_272 | 1/YA/1018:1024, 1/YA/1140:1144 | No text annotation Not in a motif group | geometric IL_7RQB_039 IL_57188.3 | |
| IL_5J3C_273 | 1/YA/1024:1030, 1/YA/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_5J3C_274 | 1/YA/1031:1034, 1/YA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_5J3C_275 | 1/YA/1042:1051, 1/YA/1108:1113 | No text annotation Not in a motif group | ||
| IL_5J3C_276 | 1/YA/1087:1091, 1/YA/1100:1102 | Major groove platform with extra cWW Not in a motif group | geometric IL_7RQB_022 IL_05564.2 | |
| IL_5J3C_277 | 1/YA/1196:1198, 1/YA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.2 | |
| IL_5J3C_278 | 1/YA/1202:1206, 1/YA/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_5J3C_279 | 1/YA/1208:1215, 1/YA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_5J3C_280 | 1/YA/1219:1221A, 1/YA/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_5J3C_281 | 1/YA/1262:1269, 1/YA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_5J3C_282 | 1/YA/1310:1313, 1/YA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_5J3C_283 | 1/YA/1319:1323, 1/YA/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_5J3C_284 | 1/YA/1351:1355, 1/YA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_5J3C_285 | 1/YA/1357:1361, 1/YA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_5J3C_286 | 1/YA/1415:1416, 1/YA/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_5J3C_287 | 1/YA/1417:1421, 1/YA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
| IL_5J3C_288 | 1/YA/1433:1435, 1/YA/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_5J3C_289 | 1/YA/1437:1440, 1/YA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_5J3C_290 | 1/YA/1448:1450A, 1/YA/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
| IL_5J3C_291 | 1/YA/1450B:1451, 1/YA/1459:1461 | Single bulged A Not in a motif group | homologous IL_7RQB_059 IL_37497.2 | |
| IL_5J3C_292 | 1/YA/1469:1473, 1/YA/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_5J3C_293 | 1/YA/1481:1482, 1/YA/1506:1510 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_5J3C_294 | 1/YA/1489:1491, 1/YA/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_5J3C_295 | 1/YA/1526:1529, 1/YA/1540:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_02656.1 | |
| IL_5J3C_296 | 1/YA/1651:1656, 1/YA/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_5J3C_297 | 1/YA/1663:1665, 1/YA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_5J3C_298 | 1/YA/1666:1669, 1/YA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_5J3C_299 | 1/YA/1669:1674, 1/YA/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_82842.2 | |
| IL_5J3C_300 | 1/YA/1686:1691, 1/YA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_5J3C_301 | 1/YA/1770:1771, 1/YA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_5J3C_302 | 1/YA/1798:1804, 1/YA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_5J3C_303 | 1/YA/1837:1840, 1/YA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_5J3C_304 | 1/YA/1841:1842, 1/YA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 IL_16396.2 | |
| IL_5J3C_305 | 1/YA/1846:1849, 1/YA/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_5J3C_306 | 1/YA/1851:1855, 1/YA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_5J3C_307 | 1/YA/1856:1860, 1/YA/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_5J3C_308 | 1/YA/1933:1934, 1/YA/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
| IL_5J3C_309 | 1/YA/1934:1945, 1/YA/1961:1964 | No text annotation Not in a motif group | homologous IL_7RQB_077 NA | |
| IL_5J3C_310 | 1/YA/2050:2052, 1/YA/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_5J3C_311 | 1/YA/2054:2057, 1/YA/2611:2615 | No text annotation Not in a motif group | homologous IL_7RQB_079 IL_01206.1 | |
| IL_5J3C_312 | 1/YA/2067:2069, 1/YA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_5J3C_313 | 1/YA/2070:2071, 1/YA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_5J3C_314 | 1/YA/2081:2083, 1/YA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_5J3C_315 | 1/YA/2085:2087, 1/YA/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_5J3C_316 | 1/YA/2108:2110, 1/YA/2179:2181 | No text annotation Not in a motif group | homologous IL_7RQB_084 NA | |
| IL_5J3C_317 | 1/YA/2110:2120, 1/YA/2178:2179 | No text annotation Not in a motif group | geometric IL_1MZP_002 IL_45944.3 | |
| IL_5J3C_318 | 1/YA/2124:2127, 1/YA/2161:2174 | No text annotation Not in a motif group | homologous IL_7RQB_086 NA | |
| IL_5J3C_319 | 1/YA/2129:2138, 1/YA/2153:2159 | No text annotation Not in a motif group | ||
| IL_5J3C_320 | 1/YA/2297:2299, 1/YA/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_088 IL_38958.7 | |
| IL_5J3C_321 | 1/YA/2350:2353, 1/YA/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_5J3C_322 | 1/YA/2401:2403, 1/YA/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
| IL_5J3C_323 | 1/YA/2453:2454, 1/YA/2498:2500 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.2 | |
| IL_5J3C_324 | 1/YA/2454:2455, 1/YA/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_5J3C_325 | 1/YA/2456:2459, 1/YA/2493:2495 | Major groove platform with extra pair Not in a motif group | homologous IL_7RQB_093 IL_63450.2 | |
| IL_5J3C_326 | 1/YA/2459:2461, 1/YA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_92788.2 | |
| IL_5J3C_327 | 1/YA/2466:2470, 1/YA/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_5J3C_328 | 1/YA/2507:2508, 1/YA/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_5J3C_329 | 1/YA/2510:2512, 1/YA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 IL_90933.2 | |
| IL_5J3C_330 | 1/YA/2512:2513, 1/YA/2571:2574 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_098 IL_71530.2 | |
| IL_5J3C_331 | 1/YA/2522:2523, 1/YA/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
| IL_5J3C_332 | 1/YA/2588:2590, 1/YA/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_5J3C_333 | 1/YA/2591:2592, 1/YA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_5J3C_334 | 1/YA/2636:2640, 1/YA/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_5J3C_335 | 1/YA/2652:2658, 1/YA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7RQB_103 IL_16458.1 | |
| IL_5J3C_336 | 1/YA/2680:2684, 1/YA/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_5J3C_337 | 1/YA/2687:2691, 1/YA/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_5J3C_338 | 1/YA/2695:2696, 1/YA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
| IL_5J3C_339 | 1/YA/2737:2742, 1/YA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_5J3C_340 | 1/YA/2838:2839, 1/YA/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_5J3C_341 | 1/YA/2843:2846, 1/YA/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_5J3C_342 | 1/YA/2847:2852, 1/YA/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_5J3C_343 | 1/YB/17:18, 1/YB/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_5J3C_344 | 1/YB/23:28, 1/YB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_5J3C_345 | 1/YB/30:31, 1/YB/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_5J3C_346 | 1/YB/34:38, 1/YB/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
| IL_5J3C_347 | 1/YB/71:79, 1/YB/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5J3C_170 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5J3C_001 | 1/QA/46:47, 1/QA/361:367, 1/QA/393:395 | No text annotation Not in a motif group | ||
| J3_5J3C_002 | 1/QA/586:588, 1/QA/651:654, 1/QA/754:755 | No text annotation Not in a motif group | ||
| J3_5J3C_003 | 1/QA/672:673, 1/QA/717:725, 1/QA/732:734 | No text annotation Not in a motif group | ||
| J3_5J3C_004 | 1/QA/826:829, 1/QA/857:861, 1/QA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_5J3C_005 | 1/QA/936:939, 1/QA/1344:1350, 1/QA/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_5J3C_006 | 1/QA/943:946, 1/QA/1235:1237, 1/QA/1337:1340 | No text annotation Not in a motif group | ||
| J3_5J3C_007 | 1/QA/955:962, 1/QA/973:984, 1/QA/1221:1225 | No text annotation Not in a motif group | ||
| J3_5J3C_008 | 1/QA/990:993, 1/QA/1045:1047, 1/QA/1210:1215 | No text annotation Not in a motif group | ||
| J3_5J3C_009 | 1/QA/1002:1006, 1/QA/1023:1028, 1/QA/1033:1038 | No text annotation Not in a motif group | ||
| J3_5J3C_010 | 1/QA/1063:1068, 1/QA/1107:1113, 1/QA/1187:1193 | No text annotation Not in a motif group | ||
| J3_5J3C_011 | 1/QA/1073:1074, 1/QA/1083:1087, 1/QA/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_5J3C_012 | 1/QA/1116:1118, 1/QA/1155:1161, 1/QA/1175:1184 | No text annotation Not in a motif group | ||
| J3_5J3C_013 | 1/QA/1237:1241, 1/QA/1296:1303, 1/QA/1334:1337 | No text annotation Not in a motif group | ||
| J3_5J3C_014 | 1/RA/30:31, 1/RA/474:481, 1/RA/509:510 | No text annotation Not in a motif group | ||
| J3_5J3C_015 | 1/RA/56:57, 1/RA/70:76, 1/RA/110:114 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
| J3_5J3C_016 | 1/RA/269:272B, 1/RA/272V:273C, 1/RA/366:370 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
| J3_5J3C_017 | 1/RA/683:689, 1/RA/773:775, 1/RA/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_5J3C_018 | 1/RA/698:700, 1/RA/732:736, 1/RA/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_5J3C_019 | 1/RA/1055:1057, 1/RA/1081:1087, 1/RA/1102:1104 | No text annotation Not in a motif group | ||
| J3_5J3C_020 | 1/RA/1298:1303, 1/RA/1625:1627, 1/RA/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_5J3C_021 | 1/RA/1306:1309, 1/RA/1605:1611, 1/RA/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_5J3C_022 | 1/RA/1344:1350, 1/RA/1381:1385, 1/RA/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_5J3C_023 | 1/RA/2091:2093, 1/RA/2196:2200, 1/RA/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_5J3C_024 | 1/RA/2295:2297, 1/RA/2321:2323, 1/RA/2332:2337 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
| J3_5J3C_025 | 1/RA/2517:2520, 1/RA/2545:2547, 1/RA/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_5J3C_027 | 1/RA/2814:2815, 1/RA/2831:2836, 1/RA/2882:2886 | No text annotation Not in a motif group | homologous J3_7RQB_014 NA | |
| J3_5J3C_028 | 1/RB/11:16, 1/RB/68:70, 1/RB/107:110 | No text annotation Not in a motif group | ||
| J3_5J3C_029 | 1/XA/46:47, 1/XA/361:367, 1/XA/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_5J3C_030 | 1/XA/586:588, 1/XA/651:654, 1/XA/754:755 | No text annotation Not in a motif group | ||
| J3_5J3C_031 | 1/XA/672:673, 1/XA/717:725, 1/XA/732:734 | No text annotation Not in a motif group | ||
| J3_5J3C_032 | 1/XA/826:829, 1/XA/857:861, 1/XA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_5J3C_033 | 1/XA/936:939, 1/XA/1344:1350, 1/XA/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_5J3C_034 | 1/XA/943:946, 1/XA/1235:1237, 1/XA/1337:1340 | No text annotation Not in a motif group | ||
| J3_5J3C_035 | 1/XA/955:962, 1/XA/973:984, 1/XA/1221:1225 | No text annotation Not in a motif group | ||
| J3_5J3C_036 | 1/XA/990:993, 1/XA/1045:1047, 1/XA/1210:1215 | No text annotation Not in a motif group | ||
| J3_5J3C_037 | 1/XA/1063:1068, 1/XA/1107:1113, 1/XA/1187:1193 | No text annotation Not in a motif group | ||
| J3_5J3C_038 | 1/XA/1073:1074, 1/XA/1083:1087, 1/XA/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_5J3C_039 | 1/XA/1116:1118, 1/XA/1155:1161, 1/XA/1175:1184 | No text annotation Not in a motif group | ||
| J3_5J3C_040 | 1/XA/1237:1241, 1/XA/1296:1303, 1/XA/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA | |
| J3_5J3C_041 | 1/YA/30:31, 1/YA/474:481, 1/YA/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_5J3C_042 | 1/YA/56:57, 1/YA/70:76, 1/YA/110:114 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
| J3_5J3C_043 | 1/YA/269:272B, 1/YA/272V:273C, 1/YA/366:370 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
| J3_5J3C_044 | 1/YA/683:689, 1/YA/773:775, 1/YA/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_5J3C_045 | 1/YA/698:700, 1/YA/732:736, 1/YA/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_5J3C_046 | 1/YA/1055:1057, 1/YA/1081:1087, 1/YA/1102:1104 | No text annotation Not in a motif group | ||
| J3_5J3C_047 | 1/YA/1298:1303, 1/YA/1625:1627, 1/YA/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_5J3C_048 | 1/YA/1306:1309, 1/YA/1605:1611, 1/YA/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_5J3C_049 | 1/YA/1344:1350, 1/YA/1381:1385, 1/YA/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_5J3C_050 | 1/YA/2091:2093, 1/YA/2196:2200, 1/YA/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_5J3C_051 | 1/YA/2295:2297, 1/YA/2321:2323, 1/YA/2332:2337 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
| J3_5J3C_052 | 1/YA/2517:2520, 1/YA/2545:2547, 1/YA/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_5J3C_054 | 1/YA/2814:2815, 1/YA/2831:2836, 1/YA/2882:2886 | No text annotation Not in a motif group | ||
| J3_5J3C_055 | 1/YB/11:16, 1/YB/68:69, 1/YB/108:110 | No text annotation Not in a motif group | homologous J3_7RQB_015 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5J3C_026 | No text annotation | ||
| J3_5J3C_053 | No text annotation |
Coloring options: