Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6CFJ_0011/1A/58:67No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_6CFJ_0021/1A/86:94No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_6CFJ_0031/1A/121:126No text annotation
Not in a motif group
homologous
HL_5J7L_136
HL_75407.1
HL_6CFJ_0041/1A/136:141No text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.2
HL_6CFJ_0051/1A/183:190No text annotation
Not in a motif group
geometric
HL_7RQB_006
HL_06192.2
HL_6CFJ_0061/1A/214:219No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_6CFJ_0071/1A/235:241No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_6CFJ_0081/1A/270:273No text annotation
Not in a motif group
geometric
HL_7RQB_009
HL_89098.1
HL_6CFJ_0091/1A/329:336No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_6CFJ_0101/1A/343:347No text annotation
Not in a motif group
homologous
HL_7RQB_011
HL_75407.1
HL_6CFJ_0111/1A/351:359No text annotation
Not in a motif group
homologous
HL_7RQB_012
HL_08002.8
HL_6CFJ_0121/1A/409:419No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_6CFJ_0131/1A/437:444No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_6CFJ_0141/1A/488:493GNRA
Not in a motif group
homologous
HL_5J7L_147
HL_42097.1
HL_6CFJ_0151/1A/513:518No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_42097.1
HL_6CFJ_0171/1A/589:598No text annotation
Not in a motif group
homologous
HL_7RQB_018
HL_89380.2
HL_6CFJ_0181/1A/635:641No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_6CFJ_0191/1A/654:659No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_42097.1
HL_6CFJ_0201/1A/666:672No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_42097.1
HL_6CFJ_0211/1A/759:766No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_6CFJ_0221/1A/791:800No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_6CFJ_0231/1A/826:832No text annotation
Not in a motif group
homologous
HL_7RQB_024
HL_74322.1
HL_6CFJ_0241/1A/873:878No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_6CFJ_0251/1A/931:938No text annotation
Not in a motif group
HL_6CFJ_0261/1A/1000:1007No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.1
HL_6CFJ_0271/1A/1024:1031No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_6CFJ_0301/1A/1217:1223No text annotation
Not in a motif group
homologous
HL_7RQB_031
HL_94651.3
HL_6CFJ_0311/1A/1268:1273No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.1
HL_6CFJ_0321/1A/1327:1335No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_6CFJ_0331/1A/1370:1376No text annotation
Not in a motif group
homologous
HL_7RQB_034
HL_46680.1
HL_6CFJ_0341/1A/1409:1414No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_6CFJ_0351/1A/1435:1444No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_6CFJ_0361/1A/1499:1506No text annotation
Not in a motif group
geometric
HL_7RQB_037
HL_32426.1
HL_6CFJ_0371/1A/1538:1544No text annotation
Not in a motif group
homologous
HL_7RQB_038
HL_46680.1
HL_6CFJ_0381/1A/1612:1615No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_6CFJ_0391/1A/1658:1665No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_6CFJ_0401/1A/1677:1682No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_6CFJ_0411/1A/1738:1743No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_03562.2
HL_6CFJ_0421/1A/1765:1771No text annotation
Not in a motif group
homologous
HL_7RQB_043
HL_43656.2
HL_6CFJ_0431/1A/1783:1787No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_6CFJ_0441/1A/1808:1818No text annotation
Not in a motif group
homologous
HL_7RQB_045
HL_43613.5
HL_6CFJ_0451/1A/1837:1842No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_6CFJ_0461/1A/1895:1900No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.1
HL_6CFJ_0471/1A/1931:1943No text annotation
Not in a motif group
homologous
HL_7RQB_048
NA
HL_6CFJ_0481/1A/1971:1979No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_6CFJ_0491/1A/2049:2058No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_6CFJ_0511/1A/2226:2231No text annotation
Not in a motif group
homologous
HL_7RQB_052
HL_98426.1
HL_6CFJ_0521/1A/2260:2268No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_6CFJ_0531/1A/2276:2288No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_6CFJ_0541/1A/2315:2325No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_6CFJ_0551/1A/2336:2343No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_6CFJ_0561/1A/2367:2374No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_6CFJ_0571/1A/2386:2391No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.1
HL_6CFJ_0581/1A/2416:2425No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_6CFJ_0591/1A/2483:2491No text annotation
Not in a motif group
homologous
HL_7RQB_060
HL_06192.2
HL_6CFJ_0601/1A/2540:2547No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_88526.2
HL_6CFJ_0611/1A/2563:2569No text annotation
Not in a motif group
homologous
HL_7RQB_062
NA
HL_6CFJ_0621/1A/2606:2611No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_6CFJ_0631/1A/2670:2675GNRA
Not in a motif group
geometric
HL_4V9F_066
HL_42097.1
HL_6CFJ_0641/1A/2713:2718No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_6CFJ_0651/1A/2758:2772No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_6CFJ_0671/1A/2829:2837No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_6CFJ_0681/1A/2866:2871No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.1
HL_6CFJ_0691/1B/38:44No text annotation
Not in a motif group
homologous
HL_7RQB_070
HL_87939.1
HL_6CFJ_0701/1B/86:91GNRA
Not in a motif group
homologous
HL_4V9F_072
HL_42097.1
HL_6CFJ_0711/1a/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_6CFJ_0731/1a/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_42097.1
HL_6CFJ_0741/1a/189C:189HNo text annotation
Not in a motif group
homologous
HL_4LFB_004
HL_10278.1
HL_6CFJ_0751/1a/201:216No text annotation
Not in a motif group
geometric
HL_5TBW_071
HL_53837.1
HL_6CFJ_0761/1a/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_6CFJ_0771/1a/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.1
HL_6CFJ_0781/1a/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_6CFJ_0801/1a/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.1
HL_6CFJ_0811/1a/419:424UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_6CFJ_0821/1a/458:473No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_6CFJ_0831/1a/521:528No text annotation
Not in a motif group
geometric
HL_2Y9H_003
HL_16173.1
HL_6CFJ_0841/1a/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_6CFJ_0851/1a/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_6CFJ_0861/1a/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_6CFJ_0871/1a/786:796No text annotation
Not in a motif group
homologous
HL_5J7L_017
HL_12326.1
HL_6CFJ_0881/1a/838:848No text annotation
Not in a motif group
homologous
HL_6CZR_089
HL_53837.1
HL_6CFJ_0891/1a/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_6CFJ_0901/1a/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_6CFJ_0911/1a/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_6CFJ_0921/1a/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_6CFJ_0941/1a/1076:1081GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_42097.1
HL_6CFJ_0951/1a/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_6CFJ_0961/1a/1134:1140No text annotation
Not in a motif group
homologous
HL_6CZR_097
NA
HL_6CFJ_0971/1a/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_6CFJ_0981/1a/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_6CFJ_0991/1a/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_6CFJ_1001/1a/1356:1366No text annotation
Not in a motif group
HL_6CFJ_1011/1a/1445:1457No text annotation
Not in a motif group
homologous
HL_6CZR_102
HL_49722.1
HL_6CFJ_1021/1a/1515:1520No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_6CFJ_1041/1w/30:40No text annotation
Not in a motif group
homologous
HL_1B23_002
NA
HL_6CFJ_1051/1w/53:61No text annotation
Not in a motif group
homologous
HL_1B23_003
NA
HL_6CFJ_1061/1x/13:22No text annotation
HL_25462.2
HL_6CFJ_1071/1x/31:39No text annotation
Not in a motif group
HL_6CFJ_1081/1x/53:61No text annotation
Not in a motif group
HL_6CFJ_1101/1y/30:40No text annotation
Not in a motif group
homologous
HL_5EL4_222
NA
HL_6CFJ_1111/1y/53:61No text annotation
Not in a motif group
homologous
HL_1FIR_003
NA
HL_6CFJ_1121/2A/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_6CFJ_1131/2A/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_6CFJ_1141/2A/123:128No text annotation
Not in a motif group
homologous
HL_7RQB_003
HL_75407.1
HL_6CFJ_1151/2A/139:142ANo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.2
HL_6CFJ_1171/2A/194:201No text annotation
Not in a motif group
homologous
HL_7RQB_006
HL_06192.2
HL_6CFJ_1181/2A/225:230No text annotation
Not in a motif group
homologous
HL_7A0S_007
HL_02862.2
HL_6CFJ_1191/2A/246:252No text annotation
Not in a motif group
homologous
HL_7A0S_008
HL_67216.7
HL_6CFJ_1201/2A/271I:271ONo text annotation
Not in a motif group
geometric
HL_5J7L_018
HL_34168.2
HL_6CFJ_1211/2A/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_6CFJ_1221/2A/319:323No text annotation
Not in a motif group
homologous
HL_7RQB_011
HL_75407.1
HL_6CFJ_1231/2A/327:335No text annotation
Not in a motif group
homologous
HL_7RQB_012
HL_08002.8
HL_6CFJ_1241/2A/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_6CFJ_1251/2A/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_6CFJ_1261/2A/462:467No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_42097.1
HL_6CFJ_1271/2A/487:493GNRA
Not in a motif group
homologous
HL_4WF9_016
HL_42097.1
HL_6CFJ_1291/2A/566:575No text annotation
Not in a motif group
geometric
HL_7RQB_018
HL_89380.2
HL_6CFJ_1301/2A/612:615No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_6CFJ_1311/2A/629:634No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_42097.1
HL_6CFJ_1321/2A/641:647GNRA with one bulged base
Not in a motif group
homologous
HL_4WF9_021
HL_42097.1
HL_6CFJ_1331/2A/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_6CFJ_1341/2A/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_6CFJ_1351/2A/779:785No text annotation
Not in a motif group
homologous
HL_7RQB_024
HL_74322.1
HL_6CFJ_1361/2A/826:831No text annotation
Not in a motif group
homologous
HL_4WF9_025
HL_64365.1
HL_6CFJ_1371/2A/882:894No text annotation
Not in a motif group
HL_6CFJ_1381/2A/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.1
HL_6CFJ_1391/2A/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_6CFJ_1411/2A/1222:1227No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.1
HL_6CFJ_1421/2A/1281:1289No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_6CFJ_1431/2A/1324:1330No text annotation
Not in a motif group
geometric
HL_7RQB_034
HL_46680.1
HL_6CFJ_1441/2A/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_6CFJ_1451/2A/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_6CFJ_1461/2A/1451:1459No text annotation
Not in a motif group
geometric
HL_7RQB_037
HL_32426.1
HL_6CFJ_1471/2A/1492:1498No text annotation
Not in a motif group
homologous
HL_7RQB_038
HL_46680.1
HL_6CFJ_1491/2A/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_6CFJ_1501/2A/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_6CFJ_1511/2A/1631:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_6CFJ_1521/2A/1691:1696No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_03562.2
HL_6CFJ_1531/2A/1720:1742No text annotation
Not in a motif group
homologous
HL_7RQB_043
HL_43656.2
HL_6CFJ_1541/2A/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_6CFJ_1551/2A/1777:1787No text annotation
Not in a motif group
homologous
HL_7RQB_045
HL_43613.5
HL_6CFJ_1561/2A/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_6CFJ_1571/2A/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.1
HL_6CFJ_1581/2A/1909:1921No text annotation
Not in a motif group
homologous
HL_7RQB_048
NA
HL_6CFJ_1591/2A/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_6CFJ_1601/2A/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_6CFJ_1621/2A/2205:2219No text annotation
Not in a motif group
homologous
HL_7RQB_052
HL_98426.1
HL_6CFJ_1631/2A/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_6CFJ_1641/2A/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_6CFJ_1651/2A/2303:2313No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_6CFJ_1661/2A/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_6CFJ_1671/2A/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_6CFJ_1681/2A/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.1
HL_6CFJ_1691/2A/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_6CFJ_1701/2A/2471:2479No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_6CFJ_1711/2A/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_88526.2
HL_6CFJ_1721/2A/2551:2557No text annotation
Not in a motif group
homologous
HL_7RQB_062
NA
HL_6CFJ_1731/2A/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_6CFJ_1741/2A/2658:2663GNRA
Not in a motif group
geometric
HL_5J7L_197
HL_42097.1
HL_6CFJ_1751/2A/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_6CFJ_1761/2A/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_6CFJ_1771/2A/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_6CFJ_1781/2A/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.1
HL_6CFJ_1791/2B/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_6CFJ_1801/2B/86:91No text annotation
Not in a motif group
homologous
HL_7RQB_071
HL_42097.1
HL_6CFJ_1811/2a/12:22No text annotation
Not in a motif group
homologous
HL_5J7L_001
HL_89881.2
HL_6CFJ_1831/2a/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_42097.1
HL_6CFJ_1841/2a/189C:189HNo text annotation
Not in a motif group
homologous
HL_4LFB_004
HL_10278.1
HL_6CFJ_1851/2a/201:216No text annotation
Not in a motif group
homologous
HL_4LFB_005
HL_56691.2
HL_6CFJ_1861/2a/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_6CFJ_1871/2a/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.1
HL_6CFJ_1881/2a/320:333No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_6CFJ_1891/2a/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_6CFJ_1901/2a/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.1
HL_6CFJ_1911/2a/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_6CFJ_1921/2a/458:473No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_6CFJ_1931/2a/521:528No text annotation
Not in a motif group
homologous
HL_4LFB_013
NA
HL_6CFJ_1941/2a/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_6CFJ_1951/2a/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_6CFJ_1961/2a/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_6CFJ_1971/2a/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_6CFJ_1981/2a/838:848No text annotation
Not in a motif group
homologous
HL_4LFB_018
HL_38927.2
HL_6CFJ_1991/2a/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_6CFJ_2001/2a/897:902GNRA
Not in a motif group
homologous
HL_5J7L_020
HL_42097.1
HL_6CFJ_2011/2a/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_6CFJ_2021/2a/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_6CFJ_2041/2a/1076:1081GNRA
Not in a motif group
homologous
HL_6CZR_095
HL_42097.1
HL_6CFJ_2051/2a/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_6CFJ_2061/2a/1134:1140No text annotation
Not in a motif group
homologous
HL_6CZR_097
NA
HL_6CFJ_2071/2a/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_6CFJ_2081/2a/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_6CFJ_2091/2a/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_6CFJ_2101/2a/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_6CFJ_2111/2a/1445:1457No text annotation
Not in a motif group
homologous
HL_6CZR_102
HL_49722.1
HL_6CFJ_2121/2a/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_6CFJ_2141/2w/30:40No text annotation
Not in a motif group
homologous
HL_1B23_002
NA
HL_6CFJ_2151/2w/53:61No text annotation
Not in a motif group
homologous
HL_6GSL_210
NA
HL_6CFJ_2161/2x/13:22No text annotation
Not in a motif group
homologous
HL_1QF6_001
NA
HL_6CFJ_2171/2x/31:39No text annotation
Not in a motif group
homologous
HL_6CFJ_107
NA
HL_6CFJ_2181/2x/53:61No text annotation
Not in a motif group
homologous
HL_5L4O_003
NA
HL_6CFJ_2201/2y/30:40No text annotation
Not in a motif group
homologous
HL_5EL4_222
NA
HL_6CFJ_2211/2y/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4WT8_217
HL_22280.1

Problematic loops

#loop idProblemSequence
HL_6CFJ_016No text annotation
HL_6CFJ_028No text annotation
HL_6CFJ_029No text annotation
HL_6CFJ_050No text annotation
HL_6CFJ_066No text annotation
HL_6CFJ_072No text annotation
HL_6CFJ_079No text annotation
HL_6CFJ_093No text annotation
HL_6CFJ_103No text annotation
HL_6CFJ_109No text annotation
HL_6CFJ_116No text annotation
HL_6CFJ_128No text annotation
HL_6CFJ_140No text annotation
HL_6CFJ_148No text annotation
HL_6CFJ_161UNCG
HL_6CFJ_182No text annotation
HL_6CFJ_203No text annotation
HL_6CFJ_213No text annotation
HL_6CFJ_219No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6CFJ_0011/1A/24:30,
1/1A/535:541
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_7RQB_001
IL_66414.6
IL_6CFJ_0021/1A/36:37,
1/1A/468:470
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.2
IL_6CFJ_0031/1A/42:43,
1/1A/461:463
Minor groove platform
Not in a motif group
homologous
IL_7RQB_003
IL_42622.2
IL_6CFJ_0041/1A/80:84,
1/1A/96:103
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_6CFJ_0051/1A/172:173,
1/1A/201:203
Single stack bend
Not in a motif group
homologous
IL_7RQB_005
IL_76488.2
IL_6CFJ_0061/1A/177:183,
1/1A/190:197
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_006
IL_04346.7
IL_6CFJ_0071/1A/228:234,
1/1A/242:247
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_6CFJ_0081/1A/269:270,
1/1A/273:275
Single bulged U
Not in a motif group
homologous
IL_7RQB_008
IL_83039.13
IL_6CFJ_0091/1A/291:292,
1/1A/392:394
Major groove platform
Not in a motif group
homologous
IL_7RQB_009
IL_27635.1
IL_6CFJ_0111/1A/304:308,
1/1A/381:384
tSH-tHW
Not in a motif group
homologous
IL_7RQB_011
IL_04059.1
IL_6CFJ_0121/1A/312:314,
1/1A/374:377
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_012
IL_38958.7
IL_6CFJ_0131/1A/317:319,
1/1A/367:371
No text annotation
Not in a motif group
homologous
IL_7RQB_013
IL_69440.1
IL_6CFJ_0141/1A/507:510,
1/1A/521:534
No text annotation
Not in a motif group
geometric
IL_7RQB_014
IL_60992.6
IL_6CFJ_0151/1A/587:589,
1/1A/598:600
No text annotation
Not in a motif group
geometric
IL_7RQB_015
IL_95997.1
IL_6CFJ_0161/1A/629:633,
1/1A/643:647
AAA cross-strand stack
Not in a motif group
homologous
IL_7RQB_016
IL_17136.1
IL_6CFJ_0171/1A/719:721,
1/1A/853:855
No text annotation
Not in a motif group
geometric
IL_7RQB_017
IL_95997.1
IL_6CFJ_0181/1A/721:725,
1/1A/846:853
No text annotation
Not in a motif group
homologous
IL_7RQB_018
IL_17470.6
IL_6CFJ_0191/1A/744:745,
1/1A/810:812
Single bulged A
Not in a motif group
geometric
IL_7RQB_019
IL_37497.2
IL_6CFJ_0201/1A/749:750,
1/1A/775:777
Single bulged G
Not in a motif group
homologous
IL_7RQB_020
IL_00225.2
IL_6CFJ_0211/1A/750:754,
1/1A/771:775
Triple sheared
Not in a motif group
geometric
IL_7RQB_021
IL_56467.8
IL_6CFJ_0221/1A/785:788,
1/1A/803:805
Major groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_022
IL_05564.2
IL_6CFJ_0231/1A/822:824,
1/1A/834:838
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_023
IL_90991.6
IL_6CFJ_0241/1A/883:885,
1/1A/985:988
No text annotation
Not in a motif group
geometric
IL_4N0T_004
IL_46796.1
IL_6CFJ_0251/1A/891:893,
1/1A/976:979
Intercalated cWW
Not in a motif group
homologous
IL_7RQB_025
IL_52767.2
IL_6CFJ_0261/1A/893:897,
1/1A/973:976
No text annotation
Not in a motif group
geometric
IL_7RQB_026
IL_94165.1
IL_6CFJ_0271/1A/904:909,
1/1A/961:966
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_7A0S_027
IL_81631.1
IL_6CFJ_0281/1A/909:910,
1/1A/959:961
Minor groove platform
Not in a motif group
homologous
IL_7RQB_028
IL_42622.2
IL_6CFJ_0291/1A/911:915,
1/1A/955:958
C-loop
Not in a motif group
homologous
IL_7RQB_029
IL_02509.1
IL_6CFJ_0301/1A/917:919,
1/1A/951:953
Isolated cWS basepair
Not in a motif group
homologous
IL_4WF9_034
IL_52767.2
IL_6CFJ_0311/1A/922:931,
1/1A/938:948
No text annotation
Not in a motif group
IL_6CFJ_0321/1A/997:999,
1/1A/1008:1010
No text annotation
Not in a motif group
homologous
IL_7RQB_034
IL_95997.1
IL_6CFJ_0331/1A/1040:1042,
1/1A/1205:1206
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_6CFJ_0341/1A/1044:1048,
1/1A/1199:1203
UAA/GAN
Not in a motif group
homologous
IL_7RQB_036
IL_89002.2
IL_6CFJ_0351/1A/1050:1057,
1/1A/1196:1197
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_7RQB_037
IL_15861.7
IL_6CFJ_0361/1A/1057:1059,
1/1A/1195:1196
Single bulged U
Not in a motif group
homologous
IL_7RQB_038
IL_83039.13
IL_6CFJ_0371/1A/1064:1070,
1/1A/1185:1190
No text annotation
Not in a motif group
homologous
IL_7RQB_039
IL_57188.3
IL_6CFJ_0381/1A/1070:1076,
1/1A/1170:1185
No text annotation
Not in a motif group
geometric
IL_7RQB_040
IL_50715.1
IL_6CFJ_0391/1A/1077:1080,
1/1A/1167:1169
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_041
IL_82068.2
IL_6CFJ_0401/1A/1089:1097,
1/1A/1154:1158
Kink-turn
Not in a motif group
homologous
IL_7RQB_042
IL_90538.4
IL_6CFJ_0421/1A/1241:1243,
1/1A/1293:1296
Isolated cWS basepair
Not in a motif group
homologous
IL_7RQB_045
IL_52767.2
IL_6CFJ_0431/1A/1247:1251,
1/1A/1286:1289
No text annotation
Not in a motif group
homologous
IL_7RQB_046
IL_68574.2
IL_6CFJ_0441/1A/1253:1260,
1/1A/1280:1284
Kink-turn
Not in a motif group
homologous
IL_7RQB_047
IL_70923.2
IL_6CFJ_0451/1A/1264:1266,
1/1A/1275:1276
Single bulged A
Not in a motif group
homologous
IL_7RQB_048
IL_37497.2
IL_6CFJ_0461/1A/1308:1315,
1/1A/2033:2039
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_049
IL_04346.7
IL_6CFJ_0471/1A/1356:1359,
1/1A/1649:1650
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_050
IL_50694.2
IL_6CFJ_0481/1A/1365:1369,
1/1A/1377:1379
C-loop
Not in a motif group
homologous
IL_7RQB_051
IL_63596.6
IL_6CFJ_0491/1A/1397:1401,
1/1A/1422:1426
UAA/GAN
Not in a motif group
homologous
IL_7RQB_052
IL_89002.2
IL_6CFJ_0501/1A/1403:1407,
1/1A/1416:1420
tSH-tHW-tHS
Not in a motif group
homologous
IL_7RQB_053
IL_17136.1
IL_6CFJ_0511/1A/1461:1462,
1/1A/1629:1633
No text annotation
Not in a motif group
homologous
IL_7RQB_054
IL_67474.4
IL_6CFJ_0521/1A/1463:1467,
1/1A/1624:1628
UAA/GAN
Not in a motif group
homologous
IL_7RQB_055
IL_89002.2
IL_6CFJ_0531/1A/1479:1481,
1/1A/1604:1607
Isolated tWW turn
Not in a motif group
homologous
IL_7RQB_056
IL_54997.7
IL_6CFJ_0541/1A/1483:1486,
1/1A/1598:1602
tSH-tHW
Not in a motif group
homologous
IL_7RQB_057
IL_04059.1
IL_6CFJ_0551/1A/1495:1497,
1/1A/1509:1510
Single stack bend
Not in a motif group
homologous
IL_7RQB_058
IL_76488.2
IL_6CFJ_0561/1A/1498:1499,
1/1A/1506:1508
Single bulged A
Not in a motif group
homologous
IL_7RQB_059
IL_37497.2
IL_6CFJ_0571/1A/1516:1520,
1/1A/1566:1569
UAA/GAN
Not in a motif group
homologous
IL_7RQB_060
IL_07235.1
IL_6CFJ_0581/1A/1528:1529,
1/1A/1552:1558
No text annotation
Not in a motif group
homologous
IL_7RQB_061
IL_52493.1
IL_6CFJ_0591/1A/1535:1537,
1/1A/1545:1546
Single bulged A
Not in a motif group
homologous
IL_7RQB_062
IL_37497.2
IL_6CFJ_0601/1A/1572:1576,
1/1A/1587:1593
No text annotation
Not in a motif group
homologous
IL_7RQB_063
IL_02656.1
IL_6CFJ_0611/1A/1698:1703,
1/1A/2026:2028
No text annotation
Not in a motif group
homologous
IL_7RQB_064
IL_12566.2
IL_6CFJ_0621/1A/1710:1712,
1/1A/2017:2019
Isolated tWW turn
Not in a motif group
homologous
IL_7RQB_065
IL_54997.7
IL_6CFJ_0631/1A/1713:1716,
1/1A/2015:2016
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_066
IL_50694.2
IL_6CFJ_0641/1A/1716:1721,
1/1A/2012:2015
Intercalated tWH
Not in a motif group
geometric
IL_7RQB_067
IL_82842.2
IL_6CFJ_0651/1A/1733:1738,
1/1A/1743:1749
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_7RQB_068
IL_65969.2
IL_6CFJ_0661/1A/1801:1802,
1/1A/2002:2004
Single bulged A
Not in a motif group
homologous
IL_7RQB_069
IL_37497.2
IL_6CFJ_0671/1A/1829:1835,
1/1A/1844:1852
Kink-turn related
Not in a motif group
homologous
IL_7RQB_070
IL_17069.3
IL_6CFJ_0681/1A/1868:1871,
1/1A/1924:1925
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_7RQB_071
IL_88739.1
IL_6CFJ_0691/1A/1872:1873,
1/1A/1920:1923
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_7RQB_072
IL_16396.2
IL_6CFJ_0701/1A/1877:1880,
1/1A/1915:1916
Minor groove platform
Not in a motif group
homologous
IL_7RQB_073
IL_88739.1
IL_6CFJ_0711/1A/1882:1886,
1/1A/1909:1913
UAA/GAN with extra pair
Not in a motif group
homologous
IL_7RQB_074
IL_90318.1
IL_6CFJ_0721/1A/1887:1891,
1/1A/1904:1908
Triple sheared
Not in a motif group
homologous
IL_7RQB_075
IL_56467.8
IL_6CFJ_0731/1A/1955:1956,
1/1A/1986:1989
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_076
IL_59677.2
IL_6CFJ_0741/1A/1956:1967,
1/1A/1983:1986
No text annotation
Not in a motif group
geometric
IL_4WF9_077
IL_81589.2
IL_6CFJ_0751/1A/2072:2074,
1/1A/2629:2630
Major groove platform
Not in a motif group
homologous
IL_7RQB_078
IL_27635.1
IL_6CFJ_0761/1A/2076:2079,
1/1A/2623:2627
No text annotation
Not in a motif group
homologous
IL_7RQB_079
IL_01206.1
IL_6CFJ_0771/1A/2089:2091,
1/1A/2454:2455
Single bulged U
Not in a motif group
homologous
IL_7RQB_080
IL_83039.13
IL_6CFJ_0781/1A/2092:2093,
1/1A/2450:2453
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.2
IL_6CFJ_0791/1A/2103:2105,
1/1A/2248:2251
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_082
IL_38958.7
IL_6CFJ_0801/1A/2107:2109,
1/1A/2244:2246
No text annotation
Not in a motif group
homologous
IL_7RQB_083
IL_95997.1
IL_6CFJ_0851/1A/2309:2311,
1/1A/2329:2333
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_7RQB_088
IL_38958.7
IL_6CFJ_0861/1A/2362:2365,
1/1A/2376:2379
Double sheared
Not in a motif group
homologous
IL_7RQB_089
IL_09705.9
IL_6CFJ_0871/1A/2413:2415,
1/1A/2426:2427
Major groove platform
Not in a motif group
homologous
IL_7RQB_090
IL_27635.1
IL_6CFJ_0881/1A/2465:2466,
1/1A/2510:2512
Single stack bend
Not in a motif group
homologous
IL_7RQB_091
IL_76488.2
IL_6CFJ_0891/1A/2466:2467,
1/1A/2508:2510
Major groove platform
Not in a motif group
geometric
IL_7RQB_092
IL_27635.1
IL_6CFJ_0901/1A/2469:2471,
1/1A/2505:2506
Major groove platform
Not in a motif group
geometric
IL_4WF9_091
IL_27635.1
IL_6CFJ_0911/1A/2471:2473,
1/1A/2501:2505
Major groove minor groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_094
IL_92788.2
IL_6CFJ_0921/1A/2478:2482,
1/1A/2492:2496
Triple sheared
Not in a motif group
homologous
IL_7RQB_095
IL_56467.8
IL_6CFJ_0931/1A/2519:2520,
1/1A/2592:2594
Major groove platform
Not in a motif group
homologous
IL_7RQB_096
IL_76223.2
IL_6CFJ_0941/1A/2522:2524,
1/1A/2586:2590
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_7RQB_097
IL_90933.2
IL_6CFJ_0951/1A/2524:2525,
1/1A/2583:2586
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_098
IL_71530.2
IL_6CFJ_0961/1A/2534:2535,
1/1A/2552:2555
Minor groove platform with intercalation
Not in a motif group
homologous
IL_7RQB_099
IL_95601.3
IL_6CFJ_0971/1A/2600:2602,
1/1A/2616:2618
No text annotation
Not in a motif group
homologous
IL_7RQB_100
NA
IL_6CFJ_0981/1A/2603:2604,
1/1A/2613:2615
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.2
IL_6CFJ_0991/1A/2648:2652,
1/1A/2787:2795
tSH-tHS-tHW
Not in a motif group
homologous
IL_7RQB_102
IL_04638.1
IL_6CFJ_1001/1A/2664:2670,
1/1A/2675:2680
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
homologous
IL_7RQB_103
IL_16458.1
IL_6CFJ_1011/1A/2692:2696,
1/1A/2738:2740
C-loop
Not in a motif group
homologous
IL_7RQB_104
IL_63596.6
IL_6CFJ_1021/1A/2699:2703,
1/1A/2731:2735
No text annotation
Not in a motif group
homologous
IL_7RQB_105
IL_08296.3
IL_6CFJ_1031/1A/2707:2708,
1/1A/2723:2727
No text annotation
Not in a motif group
IL_6CFJ_1041/1A/2750:2755,
1/1A/2775:2780
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_7RQB_107
IL_49767.5
IL_6CFJ_1051/1A/2848:2849,
1/1A/2888:2890
Single bulged C
Not in a motif group
homologous
IL_7RQB_108
IL_61258.12
IL_6CFJ_1061/1A/2853:2856,
1/1A/2880:2884
No text annotation
Not in a motif group
homologous
IL_7RQB_109
IL_58764.3
IL_6CFJ_1071/1A/2857:2862,
1/1A/2875:2879
No text annotation
Not in a motif group
homologous
IL_7RQB_110
IL_83162.5
IL_6CFJ_1081/1B/17:18,
1/1B/65:67
Major groove intercalation
Not in a motif group
homologous
IL_4WF9_112
IL_37497.2
IL_6CFJ_1091/1B/23:28,
1/1B/56:60
No text annotation
Not in a motif group
homologous
IL_7RQB_112
NA
IL_6CFJ_1101/1B/30:31,
1/1B/51:54
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_7RQB_113
IL_09061.6
IL_6CFJ_1111/1B/34:38,
1/1B/44:48
Symmetric double minor groove platform
Not in a motif group
geometric
IL_7RQB_114
IL_58103.6
IL_6CFJ_1121/1B/71:79,
1/1B/98:106
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7RQB_115
IL_56455.3
IL_6CFJ_1131/1a/30:32,
1/1a/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.2
IL_6CFJ_1141/1a/44:45,
1/1a/396:398
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.2
IL_6CFJ_1151/1a/47:52,
1/1a/359:361
No text annotation
Not in a motif group
geometric
IL_4LFB_003
IL_11178.1
IL_6CFJ_1161/1a/54:56,
1/1a/356:357
Minor groove platform
Not in a motif group
homologous
IL_5J7L_004
IL_93353.1
IL_6CFJ_1171/1a/63:66,
1/1a/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_6CFJ_1181/1a/67:69,
1/1a/100:102
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_95997.1
IL_6CFJ_1191/1a/129:131,
1/1a/231:232
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_6CFJ_1201/1a/132:136,
1/1a/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_6CFJ_1211/1a/148:154,
1/1a/167:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_6CZR_121
IL_80604.2
IL_6CFJ_1221/1a/186:188,
1/1a/189L:191
No text annotation
Not in a motif group
homologous
IL_4LFB_010
IL_95997.1
IL_6CFJ_1231/1a/242:247,
1/1a/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_6CFJ_1241/1a/249:252,
1/1a/274:275
No text annotation
Not in a motif group
homologous
IL_5J7L_015
IL_48100.2
IL_6CFJ_1251/1a/292:293,
1/1a/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_6CFJ_1261/1a/367:369,
1/1a/392:393
Single bulged U
Not in a motif group
geometric
IL_4LFB_014
IL_83039.13
IL_6CFJ_1271/1a/371:375,
1/1a/389:390
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_75255.1
IL_6CFJ_1281/1a/375:376,
1/1a/387:389
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.2
IL_6CFJ_1291/1a/409:416,
1/1a/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_6CFJ_1301/1a/446:450,
1/1a/483:488
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4LFB_018
IL_88269.3
IL_6CFJ_1311/1a/450:455,
1/1a/476:483
No text annotation
Not in a motif group
geometric
IL_4LFB_019
IL_11882.1
IL_6CFJ_1321/1a/504:511,
1/1a/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_6CFJ_1331/1a/515:521,
1/1a/528:536
No text annotation
Not in a motif group
homologous
IL_4LFB_021
NA
IL_6CFJ_1341/1a/569:575,
1/1a/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_6CFJ_1351/1a/580:584,
1/1a/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_6CZR_135
IL_17136.1
IL_6CFJ_1361/1a/594:596,
1/1a/644:645
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.1
IL_6CFJ_1371/1a/597:598,
1/1a/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.6
IL_6CFJ_1381/1a/605:612,
1/1a/628:633
No text annotation
Not in a motif group
homologous
IL_4LFB_026
IL_78349.1
IL_6CFJ_1391/1a/654:655,
1/1a/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_6CFJ_1401/1a/657:658,
1/1a/747:749
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.1
IL_6CFJ_1411/1a/662:666,
1/1a/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4LFB_029
IL_71110.1
IL_6CFJ_1421/1a/673:678,
1/1a/712:717
No text annotation
Not in a motif group
geometric
IL_4LFB_030
IL_04668.1
IL_6CFJ_1431/1a/683:688,
1/1a/699:707
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_6CFJ_1441/1a/774:778,
1/1a/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_6CFJ_1451/1a/779:783,
1/1a/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_033
IL_17136.1
IL_6CFJ_1461/1a/887:894,
1/1a/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_6CFJ_1471/1a/922:923,
1/1a/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.2
IL_6CFJ_1481/1a/925:927,
1/1a/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.2
IL_6CFJ_1491/1a/933:935,
1/1a/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_4LFB_037
IL_47078.1
IL_6CFJ_1501/1a/953:954,
1/1a/1226:1228
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_6CFJ_1511/1a/993:997,
1/1a/1044:1045
Minor groove platform
Not in a motif group
geometric
IL_4LFB_039
IL_47078.1
IL_6CFJ_1521/1a/1048:1050,
1/1a/1208:1209
Single bulged U
Not in a motif group
homologous
IL_4LFB_042
IL_83039.13
IL_6CFJ_1531/1a/1050:1052,
1/1a/1206:1208
Stack and bulge
Not in a motif group
geometric
IL_2O3X_001
IL_82842.2
IL_6CFJ_1541/1a/1052:1056,
1/1a/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_6CFJ_1551/1a/1057:1058,
1/1a/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_4LFB_045
IL_93353.1
IL_6CFJ_1561/1a/1060:1061,
1/1a/1195:1197
Single bulged U
Not in a motif group
homologous
IL_4LFB_046
IL_83039.13
IL_6CFJ_1571/1a/1061:1063,
1/1a/1193:1195
No text annotation
Not in a motif group
geometric
IL_4LFB_047
IL_95997.1
IL_6CFJ_1581/1a/1124:1127,
1/1a/1145:1149
Minor groove platform
Not in a motif group
homologous
IL_6CZR_158
IL_58103.6
IL_6CFJ_1591/1a/1129:1132,
1/1a/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_4LFB_049
IL_15052.1
IL_6CFJ_1601/1a/1158:1161,
1/1a/1175:1181
No text annotation
Not in a motif group
geometric
IL_5J7L_053
IL_42032.1
IL_6CFJ_1611/1a/1247:1253,
1/1a/1284:1290
No text annotation
Not in a motif group
homologous
IL_4LFB_051
IL_09129.1
IL_6CFJ_1621/1a/1255:1258,
1/1a/1277:1282
No text annotation
Not in a motif group
homologous
IL_6CZR_161
IL_75461.4
IL_6CFJ_1631/1a/1259:1262,
1/1a/1273:1276
Double sheared
Not in a motif group
geometric
IL_5J7L_256
IL_09705.9
IL_6CFJ_1641/1a/1303:1308,
1/1a/1329:1334
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_6CFJ_1651/1a/1399:1401,
1/1a/1501:1504
No text annotation
Not in a motif group
homologous
IL_5J7L_058
IL_36143.3
IL_6CFJ_1661/1a/1401:1405,
1/1a/1496:1501
No text annotation
Not in a motif group
IL_6CFJ_1671/1a/1405:1409,
1/1a/1491:1496
No text annotation
Not in a motif group
homologous
IL_4LFB_058
NA
IL_6CFJ_1681/1a/1412:1414,
1/1a/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_6CFJ_1691/1a/1416:1419,
1/1a/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_6CFJ_1701/1a/1431:1435,
1/1a/1466:1469
UAA/GAN variation
Not in a motif group
homologous
IL_4LFB_062
IL_07235.1
IL_6CFJ_1711/1a/1435:1437,
1/1a/1464:1466
No text annotation
Not in a motif group
geometric
IL_4LFB_063
IL_95997.1
IL_6CFJ_1721/1a/1440:1443,
1/1a/1459:1461
Isolated basepair with bulged bases
Not in a motif group
homologous
IL_6CZR_172
IL_92788.2
IL_6CFJ_1731/2A/24:30,
1/2A/510:516
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_7RQB_001
IL_66414.6
IL_6CFJ_1741/2A/36:37,
1/2A/442:444
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.2
IL_6CFJ_1751/2A/42:44,
1/2A/433:436
Major groove platform with extra cWW
Not in a motif group
geometric
IL_4V9F_003
IL_18471.2
IL_6CFJ_1761/2A/81:85,
1/2A/97:105
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_6CFJ_1771/2A/183:184,
1/2A/212:214
Single stack bend
Not in a motif group
homologous
IL_7RQB_005
IL_76488.2
IL_6CFJ_1781/2A/188:194,
1/2A/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7RQB_006
IL_04346.7
IL_6CFJ_1791/2A/239:245,
1/2A/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_6CFJ_1801/2A/272D:272F,
1/2A/363D:364
Major groove platform with extra pair
Not in a motif group
geometric
IL_5FJC_003
IL_47263.2
IL_6CFJ_1811/2A/272J:279,
1/2A/361:363
No text annotation
Not in a motif group
IL_6CFJ_1821/2A/280:284,
1/2A/357:360
tSH-tHW
Not in a motif group
homologous
IL_7RQB_011
IL_04059.1
IL_6CFJ_1831/2A/288:290,
1/2A/350:353
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_012
IL_38958.7
IL_6CFJ_1841/2A/293:295,
1/2A/343:347
No text annotation
Not in a motif group
homologous
IL_7RQB_013
IL_69440.1
IL_6CFJ_1851/2A/481:484,
1/2A/496:509
No text annotation
Not in a motif group
homologous
IL_7RQB_014
IL_60992.6
IL_6CFJ_1861/2A/564:566,
1/2A/575:577
No text annotation
Not in a motif group
homologous
IL_7RQB_015
IL_95997.1
IL_6CFJ_1871/2A/606:610,
1/2A/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_7RQB_016
IL_17136.1
IL_6CFJ_1881/2A/672:674,
1/2A/806:808
No text annotation
Not in a motif group
geometric
IL_7RQB_017
IL_95997.1
IL_6CFJ_1891/2A/674:678,
1/2A/799:806
No text annotation
Not in a motif group
homologous
IL_7RQB_018
IL_17470.6
IL_6CFJ_1901/2A/697:698,
1/2A/763:765
Single bulged A
Not in a motif group
geometric
IL_7RQB_019
IL_37497.2
IL_6CFJ_1911/2A/702:703,
1/2A/728:730
Single bulged G
Not in a motif group
homologous
IL_7RQB_020
IL_00225.2
IL_6CFJ_1921/2A/703:707,
1/2A/724:728
Triple sheared
Not in a motif group
geometric
IL_7RQB_021
IL_56467.8
IL_6CFJ_1931/2A/738:741,
1/2A/756:758
Major groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_022
IL_05564.2
IL_6CFJ_1941/2A/775:777,
1/2A/787:791
Multiple bulged bases
Not in a motif group
geometric
IL_7RQB_023
IL_90991.6
IL_6CFJ_1951/2A/837:838,
1/2A/940:942
Single stack bend
Not in a motif group
homologous
IL_7RQB_024
IL_92001.1
IL_6CFJ_1961/2A/844:846,
1/2A/931:934
Intercalated cWW
Not in a motif group
homologous
IL_7RQB_025
IL_52767.2
IL_6CFJ_1971/2A/846:850,
1/2A/927:931
No text annotation
Not in a motif group
geometric
IL_7RQB_026
IL_94165.1
IL_6CFJ_1981/2A/858:862,
1/2A/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_7RQB_027
IL_38862.1
IL_6CFJ_1991/2A/862:863,
1/2A/913:915
Minor groove platform
Not in a motif group
geometric
IL_4V9F_034
IL_42622.2
IL_6CFJ_2001/2A/864:868,
1/2A/909:912
C-loop
Not in a motif group
homologous
IL_7RQB_029
IL_02509.1
IL_6CFJ_2011/2A/870:872,
1/2A/905:907
Isolated cWS basepair
Not in a motif group
homologous
IL_7RQB_030
IL_52767.2
IL_6CFJ_2021/2A/874:882,
1/2A/894:903
No text annotation
Not in a motif group
IL_6CFJ_2031/2A/952:954,
1/2A/963:965
No text annotation
Not in a motif group
homologous
IL_7RQB_034
IL_95997.1
IL_6CFJ_2041/2A/994:996,
1/2A/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7A0S_032
IL_61258.12
IL_6CFJ_2051/2A/998:1002,
1/2A/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_7RQB_036
IL_89002.2
IL_6CFJ_2061/2A/1004:1011,
1/2A/1150:1151
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_278
IL_15861.7
IL_6CFJ_2071/2A/1011:1013,
1/2A/1149:1150
Single bulged U
Not in a motif group
geometric
IL_5J7L_279
IL_83039.13
IL_6CFJ_2081/2A/1018:1024,
1/2A/1140:1144
No text annotation
Not in a motif group
homologous
IL_4WF9_039
IL_57188.3
IL_6CFJ_2091/2A/1024:1030,
1/2A/1124:1140
No text annotation
Not in a motif group
geometric
IL_7RQB_040
IL_50715.1
IL_6CFJ_2101/2A/1031:1034,
1/2A/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_041
IL_82068.2
IL_6CFJ_2111/2A/1196:1198,
1/2A/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_7RQB_045
IL_52767.2
IL_6CFJ_2121/2A/1202:1206,
1/2A/1240:1243
No text annotation
Not in a motif group
homologous
IL_7RQB_046
IL_68574.2
IL_6CFJ_2131/2A/1208:1215,
1/2A/1234:1238
Kink-turn
Not in a motif group
homologous
IL_7RQB_047
IL_70923.2
IL_6CFJ_2141/2A/1219:1221,
1/2A/1229:1230
Single bulged A
Not in a motif group
homologous
IL_7RQB_048
IL_37497.2
IL_6CFJ_2151/2A/1262:1269,
1/2A/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_049
IL_04346.7
IL_6CFJ_2161/2A/1310:1313,
1/2A/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_050
IL_50694.2
IL_6CFJ_2171/2A/1319:1324,
1/2A/1330:1333
C-loop with extra cWW pair
Not in a motif group
geometric
IL_4V88_408
IL_93630.2
IL_6CFJ_2181/2A/1351:1355,
1/2A/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_7RQB_052
IL_89002.2
IL_6CFJ_2191/2A/1357:1361,
1/2A/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_7RQB_053
IL_17136.1
IL_6CFJ_2201/2A/1415:1416,
1/2A/1582:1587
No text annotation
Not in a motif group
homologous
IL_7RQB_054
IL_67474.4
IL_6CFJ_2211/2A/1417:1421,
1/2A/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_7RQB_055
IL_89002.2
IL_6CFJ_2221/2A/1433:1435,
1/2A/1557:1560
Isolated tWW turn
Not in a motif group
homologous
IL_7RQB_056
IL_54997.7
IL_6CFJ_2231/2A/1437:1440,
1/2A/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_7RQB_057
IL_04059.1
IL_6CFJ_2241/2A/1448:1450,
1/2A/1462:1463
Single stack bend
Not in a motif group
homologous
IL_7RQB_058
IL_76488.2
IL_6CFJ_2251/2A/1450A:1451,
1/2A/1459:1461
Single bulged A
Not in a motif group
homologous
IL_7RQB_059
IL_37497.2
IL_6CFJ_2261/2A/1469:1473,
1/2A/1518:1523
UAA/GAN
Not in a motif group
homologous
IL_7RQB_060
IL_07235.1
IL_6CFJ_2271/2A/1481:1482,
1/2A/1506:1510
No text annotation
Not in a motif group
homologous
IL_7RQB_061
IL_52493.1
IL_6CFJ_2281/2A/1489:1491,
1/2A/1499:1500
Single bulged A
Not in a motif group
homologous
IL_7RQB_062
IL_37497.2
IL_6CFJ_2291/2A/1526:1529,
1/2A/1540:1546
No text annotation
Not in a motif group
homologous
IL_7RQB_063
IL_02656.1
IL_6CFJ_2301/2A/1651:1656,
1/2A/2004:2006
No text annotation
Not in a motif group
homologous
IL_7RQB_064
IL_12566.2
IL_6CFJ_2311/2A/1663:1665,
1/2A/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_7RQB_065
IL_54997.7
IL_6CFJ_2321/2A/1666:1669,
1/2A/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_066
IL_50694.2
IL_6CFJ_2331/2A/1669:1674,
1/2A/1990:1993
Intercalated tWH
Not in a motif group
homologous
IL_7RQB_067
IL_82842.2
IL_6CFJ_2341/2A/1686:1691,
1/2A/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_7RQB_068
IL_65969.2
IL_6CFJ_2351/2A/1770:1771,
1/2A/1980:1982
Single bulged A
Not in a motif group
homologous
IL_7RQB_069
IL_37497.2
IL_6CFJ_2361/2A/1798:1804,
1/2A/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_7RQB_070
IL_17069.3
IL_6CFJ_2371/2A/1837:1840,
1/2A/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_7RQB_071
IL_88739.1
IL_6CFJ_2381/2A/1841:1842,
1/2A/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_7RQB_072
IL_16396.2
IL_6CFJ_2391/2A/1846:1849,
1/2A/1893:1894
Minor groove platform
Not in a motif group
homologous
IL_7RQB_073
IL_88739.1
IL_6CFJ_2401/2A/1851:1855,
1/2A/1887:1891
UAA/GAN with extra pair
Not in a motif group
homologous
IL_7RQB_074
IL_90318.1
IL_6CFJ_2411/2A/1856:1860,
1/2A/1882:1886
Triple sheared
Not in a motif group
homologous
IL_7RQB_075
IL_56467.8
IL_6CFJ_2421/2A/1933:1934,
1/2A/1964:1967
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_076
IL_59677.2
IL_6CFJ_2431/2A/1934:1945,
1/2A/1961:1964
No text annotation
Not in a motif group
geometric
IL_4WF9_077
IL_81589.2
IL_6CFJ_2441/2A/2050:2052,
1/2A/2617:2618
Major groove platform
Not in a motif group
homologous
IL_7RQB_078
IL_27635.1
IL_6CFJ_2451/2A/2054:2057,
1/2A/2611:2615
No text annotation
Not in a motif group
homologous
IL_7RQB_079
IL_01206.1
IL_6CFJ_2461/2A/2067:2069,
1/2A/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7RQB_080
IL_83039.13
IL_6CFJ_2471/2A/2070:2071,
1/2A/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.2
IL_6CFJ_2481/2A/2081:2083,
1/2A/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_082
IL_38958.7
IL_6CFJ_2491/2A/2085:2087,
1/2A/2232:2234
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_95997.1
IL_6CFJ_2541/2A/2350:2353,
1/2A/2364:2367
Double sheared
Not in a motif group
homologous
IL_7RQB_089
IL_09705.9
IL_6CFJ_2551/2A/2401:2403,
1/2A/2414:2415
Major groove platform
Not in a motif group
homologous
IL_7RQB_090
IL_27635.1
IL_6CFJ_2561/2A/2453:2454,
1/2A/2498:2500
Single stack bend
Not in a motif group
geometric
IL_7RQB_091
IL_76488.2
IL_6CFJ_2571/2A/2454:2455,
1/2A/2496:2498
Major groove platform
Not in a motif group
homologous
IL_7RQB_092
IL_27635.1
IL_6CFJ_2581/2A/2457:2459,
1/2A/2493:2494
Major groove platform
Not in a motif group
geometric
IL_4WF9_091
IL_27635.1
IL_6CFJ_2591/2A/2459:2461,
1/2A/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_094
IL_92788.2
IL_6CFJ_2601/2A/2466:2470,
1/2A/2480:2484
Triple sheared
Not in a motif group
homologous
IL_7RQB_095
IL_56467.8
IL_6CFJ_2611/2A/2507:2508,
1/2A/2580:2582
Major groove platform
Not in a motif group
homologous
IL_7RQB_096
IL_76223.2
IL_6CFJ_2621/2A/2510:2512,
1/2A/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_097
IL_90933.2
IL_6CFJ_2631/2A/2512:2513,
1/2A/2571:2574
Multiple bulged bases
Not in a motif group
geometric
IL_7RQB_098
IL_71530.2
IL_6CFJ_2641/2A/2522:2523,
1/2A/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_7RQB_099
IL_95601.3
IL_6CFJ_2651/2A/2588:2590,
1/2A/2604:2606
No text annotation
Not in a motif group
homologous
IL_7RQB_100
NA
IL_6CFJ_2661/2A/2591:2592,
1/2A/2601:2603
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.2
IL_6CFJ_2671/2A/2636:2640,
1/2A/2774:2782
tSH-tHS-tHW
Not in a motif group
homologous
IL_7RQB_102
IL_04638.1
IL_6CFJ_2681/2A/2652:2658,
1/2A/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
homologous
IL_7RQB_103
IL_16458.1
IL_6CFJ_2691/2A/2680:2684,
1/2A/2725:2727
C-loop
Not in a motif group
homologous
IL_7RQB_104
IL_63596.6
IL_6CFJ_2701/2A/2687:2691,
1/2A/2718:2722
No text annotation
Not in a motif group
homologous
IL_7RQB_105
IL_08296.3
IL_6CFJ_2711/2A/2695:2696,
1/2A/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_106
IL_71530.2
IL_6CFJ_2721/2A/2737:2742,
1/2A/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_7RQB_107
IL_49767.5
IL_6CFJ_2731/2A/2838:2839,
1/2A/2878:2880
Single bulged C
Not in a motif group
homologous
IL_7RQB_108
IL_61258.12
IL_6CFJ_2741/2A/2843:2846,
1/2A/2870:2874
No text annotation
Not in a motif group
homologous
IL_7RQB_109
IL_58764.3
IL_6CFJ_2751/2A/2847:2852,
1/2A/2865:2869
No text annotation
Not in a motif group
homologous
IL_7RQB_110
IL_83162.5
IL_6CFJ_2761/2B/17:18,
1/2B/65:67
Major groove intercalation
Not in a motif group
homologous
IL_7RQB_111
IL_37497.2
IL_6CFJ_2771/2B/23:28,
1/2B/56:60
No text annotation
Not in a motif group
homologous
IL_7RQB_112
NA
IL_6CFJ_2781/2B/30:32,
1/2B/50:54
No text annotation
Not in a motif group
homologous
IL_4WF9_114
IL_10810.1
IL_6CFJ_2791/2B/34:38,
1/2B/44:48
Symmetric double minor groove platform
Not in a motif group
geometric
IL_7RQB_114
IL_58103.6
IL_6CFJ_2801/2B/71:79,
1/2B/98:106
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7RQB_115
IL_56455.3
IL_6CFJ_2821/2a/30:32,
1/2a/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.2
IL_6CFJ_2831/2a/44:45,
1/2a/396:398
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.2
IL_6CFJ_2841/2a/47:52,
1/2a/359:361
No text annotation
Not in a motif group
homologous
IL_4LFB_003
IL_11178.1
IL_6CFJ_2851/2a/54:56,
1/2a/356:357
Minor groove platform
Not in a motif group
homologous
IL_5J7L_004
IL_93353.1
IL_6CFJ_2861/2a/63:66,
1/2a/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_6CZR_117
IL_76389.1
IL_6CFJ_2871/2a/67:69,
1/2a/100:102
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_95997.1
IL_6CFJ_2881/2a/129:131,
1/2a/231:232
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_6CFJ_2891/2a/132:136,
1/2a/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_6CFJ_2901/2a/148:153,
1/2a/168:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4LFB_009
IL_39753.1
IL_6CFJ_2911/2a/186:188,
1/2a/189L:191
No text annotation
Not in a motif group
homologous
IL_4LFB_010
IL_95997.1
IL_6CFJ_2921/2a/242:247,
1/2a/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_6CFJ_2931/2a/249:252,
1/2a/274:275
No text annotation
Not in a motif group
homologous
IL_5J7L_015
IL_48100.2
IL_6CFJ_2941/2a/292:293,
1/2a/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_6CFJ_2951/2a/371:375,
1/2a/389:390
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_6CFJ_2961/2a/375:376,
1/2a/387:389
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.2
IL_6CFJ_2971/2a/409:416,
1/2a/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_6CFJ_2981/2a/446:450,
1/2a/483:488
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_4LFB_018
IL_88269.3
IL_6CFJ_2991/2a/450:455,
1/2a/476:483
No text annotation
Not in a motif group
homologous
IL_4LFB_019
IL_11882.1
IL_6CFJ_3001/2a/504:511,
1/2a/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_6CFJ_3011/2a/515:521,
1/2a/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_6CFJ_3021/2a/569:575,
1/2a/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_6CFJ_3031/2a/580:584,
1/2a/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_6CFJ_3041/2a/594:596,
1/2a/644:645
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.1
IL_6CFJ_3051/2a/597:598,
1/2a/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_6CFJ_3061/2a/605:612,
1/2a/628:633
No text annotation
Not in a motif group
homologous
IL_4LFB_026
IL_78349.1
IL_6CFJ_3071/2a/654:655,
1/2a/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_6CFJ_3081/2a/657:658,
1/2a/747:749
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.1
IL_6CFJ_3091/2a/662:666,
1/2a/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4LFB_029
IL_71110.1
IL_6CFJ_3101/2a/673:678,
1/2a/712:717
No text annotation
Not in a motif group
homologous
IL_5J7L_034
IL_04668.1
IL_6CFJ_3111/2a/683:688,
1/2a/699:707
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_6CFJ_3121/2a/774:778,
1/2a/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_6CFJ_3131/2a/779:783,
1/2a/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_033
IL_17136.1
IL_6CFJ_3141/2a/887:894,
1/2a/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_6CFJ_3151/2a/922:923,
1/2a/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.2
IL_6CFJ_3161/2a/925:927,
1/2a/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.2
IL_6CFJ_3171/2a/933:936,
1/2a/1379:1384
No text annotation
Not in a motif group
homologous
IL_6CZR_149
IL_93211.1
IL_6CFJ_3181/2a/953:954,
1/2a/1226:1228
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_6CFJ_3191/2a/993:998,
1/2a/1043:1045
No text annotation
Not in a motif group
IL_6CFJ_3201/2a/1048:1050,
1/2a/1208:1209
Single bulged U
Not in a motif group
geometric
IL_4LFB_042
IL_83039.13
IL_6CFJ_3211/2a/1050:1052,
1/2a/1206:1208
No text annotation
Not in a motif group
geometric
IL_4WF9_042
IL_95997.1
IL_6CFJ_3221/2a/1052:1056,
1/2a/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_6CFJ_3231/2a/1057:1058,
1/2a/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_6CFJ_3261/2a/1124:1127,
1/2a/1145:1149
Minor groove platform
Not in a motif group
homologous
IL_6CZR_158
IL_58103.6
IL_6CFJ_3271/2a/1129:1132,
1/2a/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_4LFB_049
IL_15052.1
IL_6CFJ_3281/2a/1158:1161,
1/2a/1175:1181
No text annotation
Not in a motif group
homologous
IL_5J7L_053
IL_42032.1
IL_6CFJ_3291/2a/1247:1253,
1/2a/1284:1290
No text annotation
Not in a motif group
homologous
IL_4LFB_051
IL_09129.1
IL_6CFJ_3301/2a/1255:1258,
1/2a/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_6CFJ_3311/2a/1259:1262,
1/2a/1273:1276
Double sheared
Not in a motif group
geometric
IL_5J7L_256
IL_09705.9
IL_6CFJ_3321/2a/1303:1308,
1/2a/1329:1334
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_6CFJ_3331/2a/1399:1401,
1/2a/1501:1504
No text annotation
Not in a motif group
homologous
IL_5J7L_058
IL_36143.3
IL_6CFJ_3341/2a/1401:1405,
1/2a/1496:1501
No text annotation
Not in a motif group
IL_6CFJ_3351/2a/1405:1409,
1/2a/1491:1496
No text annotation
Not in a motif group
IL_6CFJ_3361/2a/1412:1414,
1/2a/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_6CFJ_3371/2a/1416:1419,
1/2a/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_6CFJ_3381/2a/1431:1435,
1/2a/1466:1469
UAA/GAN variation
Not in a motif group
homologous
IL_4LFB_062
IL_07235.1
IL_6CFJ_3391/2a/1435:1437,
1/2a/1464:1466
No text annotation
Not in a motif group
geometric
IL_4LFB_063
IL_95997.1
IL_6CFJ_3401/2a/1440:1443,
1/2a/1459:1461
Isolated basepair with bulged bases
Not in a motif group
homologous
IL_6CZR_172
IL_92788.2

Problematic loops

#loop idProblemSequence
IL_6CFJ_010No text annotation
IL_6CFJ_041No text annotation
IL_6CFJ_081UU cWW
IL_6CFJ_082No text annotation
IL_6CFJ_083No text annotation
IL_6CFJ_084No text annotation
IL_6CFJ_250UU cWW
IL_6CFJ_251No text annotation
IL_6CFJ_252No text annotation
IL_6CFJ_253Kink-turn
IL_6CFJ_281Not an internal loop
IL_6CFJ_324Single bulged U
IL_6CFJ_325No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6CFJ_0011/1A/30:31,
1/1A/500:507,
1/1A/534:535
No text annotation
Not in a motif group
J3_6CFJ_0021/1A/55:56,
1/1A/69:75,
1/1A/108:112
No text annotation
Not in a motif group
homologous
J3_7RQB_002
NA
J3_6CFJ_0031/1A/258:262,
1/1A/282:289,
1/1A/396:397
No text annotation
Not in a motif group
homologous
J3_7RQB_003
NA
J3_6CFJ_0041/1A/730:736,
1/1A/820:822,
1/1A/838:841
No text annotation
Not in a motif group
J3_6CFJ_0051/1A/745:747,
1/1A/779:783,
1/1A/807:810
No text annotation
Not in a motif group
homologous
J3_7RQB_005
NA
J3_6CFJ_0071/1A/1344:1349,
1/1A/1671:1673,
1/1A/1686:1689
No text annotation
Not in a motif group
homologous
J3_7RQB_007
NA
J3_6CFJ_0081/1A/1352:1355,
1/1A/1651:1657,
1/1A/1666:1668
No text annotation
Not in a motif group
homologous
J3_7RQB_008
NA
J3_6CFJ_0091/1A/1390:1396,
1/1A/1427:1431,
1/1A/1448:1449
No text annotation
Not in a motif group
homologous
J3_7RQB_009
NA
J3_6CFJ_0101/1A/2113:2115,
1/1A/2218:2222,
1/1A/2235:2240
No text annotation
Not in a motif group
homologous
J3_7RQB_010
NA
J3_6CFJ_0111/1A/2307:2309,
1/1A/2333:2335,
1/1A/2344:2349
No text annotation
Not in a motif group
homologous
J3_7RQB_011
NA
J3_6CFJ_0121/1A/2529:2532,
1/1A/2557:2559,
1/1A/2573:2579
No text annotation
Not in a motif group
homologous
J3_7RQB_012
NA
J3_6CFJ_0131/1A/2802:2804,
1/1A/2816:2821,
1/1A/2899:2903
No text annotation
Not in a motif group
homologous
J3_7RQB_013
NA
J3_6CFJ_0141/1A/2824:2825,
1/1A/2841:2846,
1/1A/2892:2896
No text annotation
Not in a motif group
J3_6CFJ_0151/1B/11:16,
1/1B/68:70,
1/1B/107:110
No text annotation
Not in a motif group
J3_6CFJ_0161/1a/46:47,
1/1a/361:367,
1/1a/393:395
No text annotation
Not in a motif group
homologous
J3_5J7L_001
NA
J3_6CFJ_0171/1a/586:588,
1/1a/651:654,
1/1a/754:755
No text annotation
Not in a motif group
J3_6CFJ_0181/1a/672:673,
1/1a/717:725,
1/1a/732:734
No text annotation
Not in a motif group
homologous
J3_6CZR_017
NA
J3_6CFJ_0191/1a/826:829,
1/1a/857:861,
1/1a/868:874
No text annotation
Not in a motif group
homologous
J3_4LFB_001
NA
J3_6CFJ_0201/1a/936:939,
1/1a/1344:1350,
1/1a/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_6CFJ_0211/1a/943:946,
1/1a/1235:1237,
1/1a/1337:1340
No text annotation
Not in a motif group
J3_6CFJ_0221/1a/955:962,
1/1a/973:984,
1/1a/1221:1225
No text annotation
Not in a motif group
J3_6CFJ_0231/1a/990:993,
1/1a/1045:1047,
1/1a/1210:1215
No text annotation
Not in a motif group
homologous
J3_4LFB_005
NA
J3_6CFJ_0241/1a/1002:1007,
1/1a/1022:1028,
1/1a/1033:1038
No text annotation
Not in a motif group
J3_6CFJ_0251/1a/1063:1068,
1/1a/1107:1113,
1/1a/1187:1193
No text annotation
Not in a motif group
J3_6CFJ_0261/1a/1073:1074,
1/1a/1083:1087,
1/1a/1098:1102
No text annotation
Not in a motif group
homologous
J3_5J7L_009
NA
J3_6CFJ_0271/1a/1116:1118,
1/1a/1155:1158,
1/1a/1181:1184
No text annotation
Not in a motif group
homologous
J3_4LFB_008
NA
J3_6CFJ_0281/1a/1237:1241,
1/1a/1296:1303,
1/1a/1334:1337
No text annotation
Not in a motif group
homologous
J3_4LFB_009
NA
J3_6CFJ_0291/2A/30:31,
1/2A/474:481,
1/2A/509:510
No text annotation
Not in a motif group
J3_6CFJ_0301/2A/56:57,
1/2A/70:76,
1/2A/110:114
No text annotation
Not in a motif group
homologous
J3_7RQB_002
NA
J3_6CFJ_0311/2A/269:271B,
1/2A/271V:272B,
1/2A/366:370
No text annotation
Not in a motif group
homologous
J3_7RQB_003
NA
J3_6CFJ_0321/2A/683:689,
1/2A/773:775,
1/2A/791:794
No text annotation
Not in a motif group
homologous
J3_7RQB_004
NA
J3_6CFJ_0331/2A/698:700,
1/2A/732:736,
1/2A/760:763
No text annotation
Not in a motif group
homologous
J3_7RQB_005
NA
J3_6CFJ_0341/2A/1298:1303,
1/2A/1625:1627,
1/2A/1639:1642
No text annotation
Not in a motif group
homologous
J3_7RQB_007
NA
J3_6CFJ_0351/2A/1306:1309,
1/2A/1605:1611,
1/2A/1620:1622
No text annotation
Not in a motif group
homologous
J3_7RQB_008
NA
J3_6CFJ_0361/2A/1344:1350,
1/2A/1381:1385,
1/2A/1402:1403
No text annotation
Not in a motif group
homologous
J3_7RQB_009
NA
J3_6CFJ_0371/2A/2091:2093,
1/2A/2196:2200,
1/2A/2223:2228
No text annotation
Not in a motif group
homologous
J3_7RQB_010
NA
J3_6CFJ_0381/2A/2295:2299,
1/2A/2317:2323,
1/2A/2332:2337
No text annotation
Not in a motif group
J3_6CFJ_0391/2A/2517:2520,
1/2A/2545:2547,
1/2A/2561:2567
No text annotation
Not in a motif group
homologous
J3_7RQB_012
NA
J3_6CFJ_0401/2A/2814:2815,
1/2A/2831:2836,
1/2A/2882:2886
No text annotation
Not in a motif group
J3_6CFJ_0411/2B/11:16,
1/2B/68:69,
1/2B/108:110
No text annotation
Not in a motif group
homologous
J3_7RQB_015
NA
J3_6CFJ_0421/2a/46:47,
1/2a/361:369,
1/2a/392:395
No text annotation
Not in a motif group
J3_6CFJ_0431/2a/586:588,
1/2a/651:654,
1/2a/754:755
No text annotation
Not in a motif group
J3_6CFJ_0441/2a/672:673,
1/2a/717:725,
1/2a/732:734
No text annotation
Not in a motif group
J3_6CFJ_0451/2a/826:829,
1/2a/857:861,
1/2a/868:874
No text annotation
Not in a motif group
homologous
J3_4LFB_001
NA
J3_6CFJ_0461/2a/936:939,
1/2a/1344:1350,
1/2a/1372:1379
No text annotation
Not in a motif group
J3_6CFJ_0471/2a/943:946,
1/2a/1235:1237,
1/2a/1337:1340
No text annotation
Not in a motif group
J3_6CFJ_0481/2a/955:962,
1/2a/973:984,
1/2a/1221:1225
No text annotation
Not in a motif group
J3_6CFJ_0491/2a/990:993,
1/2a/1045:1047,
1/2a/1210:1215
No text annotation
Not in a motif group
J3_6CFJ_0501/2a/1002:1006,
1/2a/1023:1028,
1/2a/1033:1038
No text annotation
Not in a motif group
J3_6CFJ_0511/2a/1063:1068,
1/2a/1107:1113,
1/2a/1187:1193
No text annotation
Not in a motif group
J3_6CFJ_0521/2a/1073:1074,
1/2a/1083:1087,
1/2a/1098:1102
No text annotation
Not in a motif group
homologous
J3_5J7L_009
NA
J3_6CFJ_0531/2a/1116:1118,
1/2a/1155:1158,
1/2a/1181:1184
No text annotation
Not in a motif group
J3_6CFJ_0541/2a/1237:1241,
1/2a/1296:1303,
1/2a/1334:1337
No text annotation
Not in a motif group
homologous
J3_4LFB_009
NA

Problematic loops

#loop idProblemSequence
J3_6CFJ_006No text annotation

Coloring options:
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