Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V5K_0011/AA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_4V5K_0031/AA/157:164No text annotation
Not in a motif group
geometric
HL_7A0S_056
HL_84085.2
HL_4V5K_0041/AA/189C:189HNo text annotation
Not in a motif group
homologous
HL_4LFB_004
HL_10278.1
HL_4V5K_0051/AA/199:218No text annotation
Not in a motif group
HL_4V5K_0061/AA/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_4V5K_0071/AA/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.2
HL_4V5K_0081/AA/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_4V5K_0101/AA/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.2
HL_4V5K_0111/AA/419:424UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_4V5K_0121/AA/458:473No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_4V5K_0131/AA/522:527No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_75407.1
HL_4V5K_0141/AA/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_4V5K_0151/AA/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_4V5K_0161/AA/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_4V5K_0171/AA/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_4V5K_0181/AA/838:848No text annotation
Not in a motif group
HL_4V5K_0191/AA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.2
HL_4V5K_0201/AA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.2
HL_4V5K_0211/AA/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4V5K_0221/AA/1012:1017No text annotation
Not in a motif group
HL_4V5K_0231/AA/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.2
HL_4V5K_0241/AA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4V5K_0251/AA/1128:1143No text annotation
Not in a motif group
HL_4V5K_0261/AA/1164:1172No text annotation
Not in a motif group
HL_4V5K_0271/AA/1264:1271No text annotation
Not in a motif group
geometric
HL_4WF9_053
HL_09136.1
HL_4V5K_0281/AA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_4V5K_0291/AA/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_4V5K_0301/AA/1445:1457UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_4V5K_0311/AA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_4V5K_0321/AV/13:22No text annotation
Not in a motif group
homologous
HL_4TUE_033
HL_25462.2
HL_4V5K_0331/AV/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_4V9Q_214
HL_53597.2
HL_4V5K_0341/AV/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5HR7_006
HL_22280.1
HL_4V5K_0361/AW/30:40No text annotation
Not in a motif group
HL_4V5K_0371/BA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_4V5K_0381/BA/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_4V5K_0391/BA/123:128No text annotation
Not in a motif group
homologous
HL_7RQB_003
HL_75407.1
HL_4V5K_0401/BA/139:142ANo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.3
HL_4V5K_0421/BA/194:201No text annotation
Not in a motif group
homologous
HL_7RQB_006
HL_06192.2
HL_4V5K_0431/BA/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_4V5K_0441/BA/246:252No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_4V5K_0451/BA/271J:271MNo text annotation
Not in a motif group
homologous
HL_7RQB_009
HL_89098.1
HL_4V5K_0461/BA/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_4V5K_0471/BA/319:323No text annotation
Not in a motif group
homologous
HL_7RQB_011
HL_75407.1
HL_4V5K_0481/BA/327:335No text annotation
Not in a motif group
homologous
HL_7RQB_012
HL_08002.9
HL_4V5K_0491/BA/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_4V5K_0501/BA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_4V5K_0511/BA/462:467No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_42097.2
HL_4V5K_0521/BA/487:493No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_42097.2
HL_4V5K_0541/BA/566:575No text annotation
Not in a motif group
homologous
HL_7RQB_018
HL_89380.2
HL_4V5K_0551/BA/612:615No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_4V5K_0561/BA/629:634No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_42097.2
HL_4V5K_0571/BA/641:647GNRA with one bulged base
Not in a motif group
homologous
HL_4WF9_021
HL_42097.2
HL_4V5K_0581/BA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_4V5K_0591/BA/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_4V5K_0601/BA/779:785No text annotation
Not in a motif group
homologous
HL_7A0S_023
HL_27930.1
HL_4V5K_0611/BA/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_4V5K_0621/BA/883:893No text annotation
Not in a motif group
HL_4V5K_0631/BA/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.2
HL_4V5K_0641/BA/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_4V5K_0651/BA/1043:1112No text annotation
Not in a motif group
HL_4V5K_0661/BA/1171:1178No text annotation
Not in a motif group
geometric
HL_4OOG_001
HL_28980.1
HL_4V5K_0671/BA/1222:1227No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.2
HL_4V5K_0681/BA/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4WF9_032
HL_89380.2
HL_4V5K_0691/BA/1324:1330No text annotation
Not in a motif group
homologous
HL_7RQB_034
HL_46680.1
HL_4V5K_0701/BA/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_4V5K_0711/BA/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_4V5K_0721/BA/1450A:1461No text annotation
Not in a motif group
HL_4V5K_0731/BA/1492:1498No text annotation
Not in a motif group
HL_4V5K_0751/BA/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_4V5K_0761/BA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_4V5K_0771/BA/1631:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_4V5K_0781/BA/1691:1696No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_03562.2
HL_4V5K_0791/BA/1720:1742No text annotation
Not in a motif group
geometric
HL_4V88_190
HL_91058.1
HL_4V5K_0801/BA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_4V5K_0811/BA/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_4V5K_0821/BA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.2
HL_4V5K_0831/BA/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.2
HL_4V5K_0841/BA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4V5K_0851/BA/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_4V5K_0861/BA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_4V5K_0881/BA/2205:2219No text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_89098.1
HL_4V5K_0891/BA/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_4V5K_0901/BA/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_4V5K_0911/BA/2302:2314No text annotation
Not in a motif group
HL_4V5K_0921/BA/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_4V5K_0931/BA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_4V5K_0941/BA/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.2
HL_4V5K_0951/BA/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_4V5K_0961/BA/2471:2479No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_4V5K_0971/BA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_91104.1
HL_4V5K_0981/BA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4V5K_0991/BA/2594:2599GNRA
Not in a motif group
homologous
HL_4WF9_059
HL_42097.2
HL_4V5K_1001/BA/2658:2663GNRA
Not in a motif group
geometric
HL_5J7L_197
HL_42097.2
HL_4V5K_1011/BA/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_4V5K_1021/BA/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_4V5K_1041/BA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_4V5K_1051/BA/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.2
HL_4V5K_1061/BB/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_4V5K_1071/BB/86:91No text annotation
Not in a motif group
homologous
HL_7A0S_070
HL_42097.2
HL_4V5K_1081/CA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_4V5K_1101/CA/157:164No text annotation
Not in a motif group
geometric
HL_7A0S_056
HL_84085.2
HL_4V5K_1111/CA/189C:189HNo text annotation
Not in a motif group
homologous
HL_4LFB_004
HL_10278.1
HL_4V5K_1121/CA/199:218No text annotation
Not in a motif group
HL_4V5K_1131/CA/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_4V5K_1141/CA/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.2
HL_4V5K_1151/CA/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_4V5K_1161/CA/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_4V5K_1171/CA/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.2
HL_4V5K_1181/CA/419:424UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_4V5K_1191/CA/458:473No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_4V5K_1201/CA/522:527No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_75407.1
HL_4V5K_1211/CA/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_4V5K_1221/CA/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_4V5K_1231/CA/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_4V5K_1241/CA/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_4V5K_1251/CA/838:848No text annotation
Not in a motif group
HL_4V5K_1261/CA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.2
HL_4V5K_1271/CA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.2
HL_4V5K_1281/CA/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4V5K_1291/CA/1010:1019No text annotation
Not in a motif group
HL_4V5K_1301/CA/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.2
HL_4V5K_1311/CA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4V5K_1321/CA/1128:1143No text annotation
Not in a motif group
HL_4V5K_1331/CA/1164:1172No text annotation
Not in a motif group
HL_4V5K_1341/CA/1264:1271No text annotation
Not in a motif group
geometric
HL_4WF9_053
HL_09136.1
HL_4V5K_1351/CA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_4V5K_1361/CA/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_4V5K_1371/CA/1444:1458No text annotation
Not in a motif group
HL_4V5K_1381/CA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_4V5K_1391/CV/13:22No text annotation
Not in a motif group
homologous
HL_4TUE_033
HL_25462.2
HL_4V5K_1401/CV/31:39No text annotation
Not in a motif group
homologous
HL_4V8N_144
NA
HL_4V5K_1411/CV/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4TUE_035
HL_71309.1
HL_4V5K_1421/CW/53:61No text annotation
Not in a motif group
homologous
HL_4V7M_034
NA
HL_4V5K_1431/DA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_4V5K_1441/DA/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_4V5K_1451/DA/123:128No text annotation
Not in a motif group
homologous
HL_7RQB_003
HL_75407.1
HL_4V5K_1461/DA/139:142ANo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.3
HL_4V5K_1481/DA/194:201No text annotation
Not in a motif group
geometric
HL_7RQB_006
HL_06192.2
HL_4V5K_1491/DA/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_4V5K_1501/DA/246:252No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_4V5K_1511/DA/271J:271MNo text annotation
Not in a motif group
geometric
HL_6JOO_002
HL_38927.2
HL_4V5K_1521/DA/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_4V5K_1531/DA/319:323No text annotation
Not in a motif group
homologous
HL_7RQB_011
HL_75407.1
HL_4V5K_1541/DA/327:335No text annotation
Not in a motif group
homologous
HL_7RQB_012
HL_08002.9
HL_4V5K_1551/DA/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_4V5K_1561/DA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_4V5K_1571/DA/462:467No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_42097.2
HL_4V5K_1581/DA/487:493No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_42097.2
HL_4V5K_1601/DA/566:575No text annotation
Not in a motif group
geometric
HL_7RQB_018
HL_89380.2
HL_4V5K_1611/DA/612:615No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_4V5K_1621/DA/629:634GNRA
Not in a motif group
homologous
HL_4WF9_020
HL_42097.2
HL_4V5K_1631/DA/641:647GNRA with one bulged base
Not in a motif group
homologous
HL_4WF9_021
HL_42097.2
HL_4V5K_1641/DA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_4V5K_1651/DA/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_4V5K_1661/DA/779:785No text annotation
Not in a motif group
homologous
HL_7A0S_023
HL_27930.1
HL_4V5K_1671/DA/826:831No text annotation
Not in a motif group
homologous
HL_4WF9_025
HL_64365.1
HL_4V5K_1681/DA/883:893No text annotation
Not in a motif group
HL_4V5K_1691/DA/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.2
HL_4V5K_1701/DA/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_4V5K_1711/DA/1043:1112No text annotation
Not in a motif group
HL_4V5K_1721/DA/1171:1178No text annotation
Not in a motif group
geometric
HL_4OOG_001
HL_28980.1
HL_4V5K_1731/DA/1222:1227No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.2
HL_4V5K_1741/DA/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4WF9_032
HL_89380.2
HL_4V5K_1751/DA/1324:1330No text annotation
Not in a motif group
homologous
HL_7RQB_034
HL_46680.1
HL_4V5K_1761/DA/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_4V5K_1771/DA/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_4V5K_1781/DA/1450A:1461No text annotation
Not in a motif group
HL_4V5K_1791/DA/1492:1498No text annotation
Not in a motif group
HL_4V5K_1811/DA/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_4V5K_1821/DA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_4V5K_1831/DA/1631:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_4V5K_1841/DA/1691:1696No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_03562.2
HL_4V5K_1851/DA/1720:1742No text annotation
Not in a motif group
geometric
HL_4V88_190
HL_91058.1
HL_4V5K_1861/DA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_4V5K_1871/DA/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_4V5K_1881/DA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.2
HL_4V5K_1891/DA/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.2
HL_4V5K_1901/DA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4V5K_1911/DA/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_4V5K_1921/DA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_4V5K_1931/DA/2137:2154No text annotation
Not in a motif group
HL_4V5K_1941/DA/2205:2219No text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_89098.1
HL_4V5K_1951/DA/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_4V5K_1961/DA/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_4V5K_1971/DA/2302:2314No text annotation
Not in a motif group
HL_4V5K_1981/DA/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_4V5K_1991/DA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_4V5K_2001/DA/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.2
HL_4V5K_2011/DA/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_4V5K_2021/DA/2471:2479No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_4V5K_2031/DA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_91104.1
HL_4V5K_2041/DA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4V5K_2051/DA/2594:2599GNRA
Not in a motif group
homologous
HL_4WF9_059
HL_42097.2
HL_4V5K_2061/DA/2658:2663GNRA
Not in a motif group
geometric
HL_5J7L_197
HL_42097.2
HL_4V5K_2071/DA/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_4V5K_2081/DA/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_4V5K_2101/DA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_4V5K_2111/DA/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.2
HL_4V5K_2121/DB/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_4V5K_2131/DB/86:91No text annotation
Not in a motif group
homologous
HL_7A0S_070
HL_42097.2

Problematic loops

#loop idProblemSequence
HL_4V5K_002No text annotation
HL_4V5K_009UNCG
HL_4V5K_035No text annotation
HL_4V5K_041No text annotation
HL_4V5K_053No text annotation
HL_4V5K_074No text annotation
HL_4V5K_087No text annotation
HL_4V5K_103No text annotation
HL_4V5K_109No text annotation
HL_4V5K_147No text annotation
HL_4V5K_159No text annotation
HL_4V5K_180No text annotation
HL_4V5K_209No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V5K_0011/AA/30:32,
1/AA/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.3
IL_4V5K_0021/AA/44:45,
1/AA/396:398
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.3
IL_4V5K_0031/AA/47:52,
1/AA/359:361
No text annotation
Not in a motif group
geometric
IL_4LFB_003
IL_11178.1
IL_4V5K_0041/AA/54:56,
1/AA/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_4V5K_0051/AA/63:66,
1/AA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_4V5K_0061/AA/67:69,
1/AA/100:102
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_95997.1
IL_4V5K_0071/AA/129:131,
1/AA/231:232
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_4V5K_0081/AA/132:136,
1/AA/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_4V5K_0091/AA/148:153,
1/AA/168:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4LFB_009
IL_39753.1
IL_4V5K_0101/AA/186:188,
1/AA/189L:191
No text annotation
Not in a motif group
homologous
IL_4LFB_010
IL_95997.1
IL_4V5K_0111/AA/242:247,
1/AA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_4V5K_0121/AA/249:252,
1/AA/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_4V5K_0131/AA/292:293,
1/AA/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_4V5K_0141/AA/367:369,
1/AA/392:393
Single bulged U
Not in a motif group
homologous
IL_4LFB_014
IL_83039.14
IL_4V5K_0151/AA/371:375,
1/AA/389:390
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_4V5K_0161/AA/375:376,
1/AA/387:389
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.3
IL_4V5K_0171/AA/409:416,
1/AA/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_4V5K_0181/AA/446:450,
1/AA/483:488
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4LFB_018
IL_88269.3
IL_4V5K_0191/AA/450:455,
1/AA/476:483
No text annotation
Not in a motif group
geometric
IL_4LFB_019
IL_11882.1
IL_4V5K_0201/AA/504:511,
1/AA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_4V5K_0211/AA/515:521,
1/AA/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_4V5K_0221/AA/569:575,
1/AA/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_4V5K_0231/AA/580:584,
1/AA/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_4V5K_0241/AA/594:596,
1/AA/644:645
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.2
IL_4V5K_0251/AA/597:598,
1/AA/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.6
IL_4V5K_0261/AA/605:612,
1/AA/628:633
No text annotation
Not in a motif group
homologous
IL_4LFB_026
IL_78349.1
IL_4V5K_0271/AA/654:655,
1/AA/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_031
IL_50694.2
IL_4V5K_0281/AA/657:658,
1/AA/747:749
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.2
IL_4V5K_0291/AA/662:666,
1/AA/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4LFB_029
IL_71110.1
IL_4V5K_0301/AA/683:688,
1/AA/699:707
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_4V5K_0311/AA/774:778,
1/AA/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_4V5K_0321/AA/779:783,
1/AA/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_4V5K_0331/AA/887:894,
1/AA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_4V5K_0341/AA/922:923,
1/AA/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.3
IL_4V5K_0351/AA/925:927,
1/AA/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.3
IL_4V5K_0361/AA/933:936,
1/AA/1379:1384
No text annotation
Not in a motif group
homologous
IL_6CZR_149
IL_93211.1
IL_4V5K_0371/AA/952:954,
1/AA/1226:1229
Minor groove platform with extra cWW
Not in a motif group
geometric
IL_4WF9_003
IL_65006.1
IL_4V5K_0381/AA/993:999,
1/AA/1042:1045
No text annotation
Not in a motif group
IL_4V5K_0391/AA/1048:1050,
1/AA/1208:1209
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.14
IL_4V5K_0401/AA/1051:1056,
1/AA/1204:1207
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_473
IL_30621.3
IL_4V5K_0411/AA/1057:1058,
1/AA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_4V5K_0421/AA/1060:1061,
1/AA/1195:1197
Single bulged U
Not in a motif group
geometric
IL_4LFB_046
IL_83039.14
IL_4V5K_0431/AA/1061:1063,
1/AA/1193:1195
No text annotation
Not in a motif group
homologous
IL_4LFB_047
IL_95997.1
IL_4V5K_0441/AA/1122:1128,
1/AA/1143:1151
No text annotation
Not in a motif group
IL_4V5K_0451/AA/1246:1253,
1/AA/1284:1291
No text annotation
Not in a motif group
IL_4V5K_0461/AA/1254:1264,
1/AA/1271:1283
No text annotation
Not in a motif group
IL_4V5K_0471/AA/1303:1308,
1/AA/1329:1334
No text annotation
Not in a motif group
homologous
IL_4LFB_055
IL_19954.2
IL_4V5K_0481/AA/1399:1401,
1/AA/1501:1504
No text annotation
Not in a motif group
geometric
IL_4V88_463
IL_36143.3
IL_4V5K_0491/AA/1401:1404,
1/AA/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_4V5K_0511/AA/1407:1409,
1/AA/1491:1494
Not an internal loop
Not in a motif group
geometric
IL_5VCI_005
IL_82842.2
IL_4V5K_0521/AA/1412:1414,
1/AA/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_4V5K_0531/AA/1416:1419,
1/AA/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_4V5K_0541/AA/1431:1435,
1/AA/1466:1469
UAA/GAN variation
Not in a motif group
homologous
IL_4LFB_062
IL_07235.1
IL_4V5K_0551/AA/1435:1437,
1/AA/1464:1466
No text annotation
Not in a motif group
geometric
IL_4LFB_063
IL_95997.1
IL_4V5K_0561/AA/1440:1443,
1/AA/1459:1461
Isolated basepair with bulged bases
Not in a motif group
homologous
IL_6CZR_172
IL_92788.2
IL_4V5K_0571/BA/24:30,
1/BA/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_7RQB_001
IL_66414.6
IL_4V5K_0581/BA/36:37,
1/BA/442:444
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.3
IL_4V5K_0591/BA/42:43,
1/BA/434:436
Minor groove platform
Not in a motif group
homologous
IL_7RQB_003
IL_42622.2
IL_4V5K_0601/BA/81:85,
1/BA/97:105
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_4V5K_0611/BA/183:184,
1/BA/212:214
Single stack bend
Not in a motif group
homologous
IL_7RQB_005
IL_76488.2
IL_4V5K_0621/BA/188:194,
1/BA/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7RQB_006
IL_04346.7
IL_4V5K_0631/BA/239:245,
1/BA/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_4V5K_0641/BA/271I:271J,
1/BA/271M:271O
No text annotation
Not in a motif group
IL_4V5K_0651/BA/272D:272E,
1/BA/363E:364
Major groove platform
Not in a motif group
homologous
IL_7RQB_009
IL_27635.2
IL_4V5K_0671/BA/280:284,
1/BA/357:360
tSH-tHW
Not in a motif group
homologous
IL_7RQB_011
IL_04059.1
IL_4V5K_0681/BA/288:290,
1/BA/350:353
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_012
IL_38958.7
IL_4V5K_0691/BA/293:295,
1/BA/343:347
No text annotation
Not in a motif group
homologous
IL_7RQB_013
IL_69440.1
IL_4V5K_0701/BA/481:484,
1/BA/496:509
No text annotation
Not in a motif group
homologous
IL_7RQB_014
IL_60992.6
IL_4V5K_0711/BA/564:566,
1/BA/575:577
No text annotation
Not in a motif group
geometric
IL_7RQB_015
IL_95997.1
IL_4V5K_0721/BA/606:610,
1/BA/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_4WF9_019
IL_17136.1
IL_4V5K_0731/BA/672:674,
1/BA/806:808
No text annotation
Not in a motif group
homologous
IL_7RQB_017
IL_95997.1
IL_4V5K_0741/BA/674:678,
1/BA/799:806
tHW-tHW cross-strand stack
Not in a motif group
geometric
IL_4WF9_021
IL_17470.6
IL_4V5K_0751/BA/697:698,
1/BA/763:765
Single bulged A
Not in a motif group
homologous
IL_7RQB_019
IL_37497.3
IL_4V5K_0761/BA/702:703,
1/BA/728:730
Single bulged G
Not in a motif group
homologous
IL_7RQB_020
IL_00225.3
IL_4V5K_0771/BA/703:707,
1/BA/724:728
Triple sheared
Not in a motif group