5ZLU Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/DD/28:29,1/DD/43:45 | NA | NA |
2 | ➜ | 1/G/30:32,1/G/552:553 | NA | NA |
3 | ➜ | 1/G/44:45,1/G/396:398 | NA | NA |
4 | ➜ | 1/G/47:54,1/G/357:361 | NA | NA |
5 | ➜ | 1/G/54:56,1/G/356:357 | NA | NA |
6 | ➜ | 1/G/63:66,1/G/103:104 | NA | NA |
7 | ➜ | 1/G/66:76,1/G/93:103 | NA | NA |
8 | ➜ | 1/G/128:131,1/G/231:233 | NA | NA |
9 | ➜ | 1/G/132:136,1/G/227:230 | NA | NA |
10 | ➜ | 1/G/148:154,1/G/168:174 | NA | NA |
11 | ➜ | 1/G/154:156,1/G/165:168 | NA | NA |
12 | ➜ | 1/G/156:158,1/G/163:165 | NA | NA |
13 | ➜ | 1/G/185:186D,1/G/191C:192 | NA | NA |
14 | ➜ | 1/G/242:247,1/G/277:284 | NA | NA |
15 | ➜ | 1/G/248:254,1/G/272:276 | NA | NA |
16 | ➜ | 1/G/292:293,1/G/304:308 | NA | NA |
17 | ➜ | 1/G/367:369,1/G/392:393 | NA | NA |
18 | ➜ | 1/G/371:375,1/G/389:390 | NA | NA |
19 | ➜ | 1/G/375:376,1/G/387:389 | NA | NA |
20 | ➜ | 1/G/376:378,1/G/386:387 | NA | NA |
21 | ➜ | 1/G/378:379,1/G/384:386 | NA | NA |
22 | ➜ | 1/G/409:416,1/G/427:433 | NA | NA |
23 | ➜ | 1/G/446:450,1/G/483:488 | NA | NA |
24 | ➜ | 1/G/450:455,1/G/477:483 | NA | NA |
25 | ➜ | 1/G/504:511,1/G/540:541 | NA | NA |
26 | ➜ | 1/G/514:521,1/G/528:537 | NA | NA |
27 | ➜ | 1/G/569:575,1/G/880:881 | NA | NA |
28 | ➜ | 1/G/580:584,1/G/757:761 | NA | NA |
29 | ➜ | 1/G/594:596,1/G/644:645 | NA | NA |
30 | ➜ | 1/G/597:599,1/G/639:643 | NA | NA |
31 | ➜ | 1/G/605:613,1/G/627:633 | NA | NA |
32 | ➜ | 1/G/654:658,1/G/747:754 | NA | NA |
33 | ➜ | 1/G/659:661,1/G/745:746 | NA | NA |
34 | ➜ | 1/G/661:666,1/G/740:745 | NA | NA |
35 | ➜ | 1/G/666:671,1/G/736:740 | NA | NA |
36 | ➜ | 1/G/673:681,1/G/710:717 | NA | NA |
37 | ➜ | 1/G/681:682,1/G/708:710 | NA | NA |
38 | ➜ | 1/G/683:689,1/G/698:707 | NA | NA |
39 | ➜ | 1/G/774:783,1/G/799:805 | NA | NA |
40 | ➜ | 1/G/887:895,1/G/904:910 | NA | NA |
41 | ➜ | 1/G/922:923,1/G/1393:1395 | NA | NA |
42 | ➜ | 1/G/925:927,1/G/1390:1391 | NA | NA |
43 | ➜ | 1/G/933:935,1/G/1380:1384 | NA | NA |
44 | ➜ | 1/G/953:954,1/G/1226:1228 | NA | NA |
45 | ➜ | 1/G/1048:1050,1/G/1208:1209 | NA | NA |
46 | ➜ | 1/G/1051:1056,1/G/1204:1207 | NA | NA |
47 | ➜ | 1/G/1057:1058,1/G/1199:1203 | NA | NA |
48 | ➜ | 1/G/1059:1061,1/G/1195:1198 | NA | NA |
49 | ➜ | 1/G/1124:1128,1/G/1143:1149 | NA | NA |
50 | ➜ | 1/G/1128:1133,1/G/1141:1143 | NA | NA |
51 | ➜ | 1/G/1158:1162,1/G/1174:1181 | NA | NA |
52 | ➜ | 1/G/1246:1253,1/G/1284:1291 | NA | NA |
53 | ➜ | 1/G/1255:1258,1/G/1277:1282 | NA | NA |
54 | ➜ | 1/G/1258:1260,1/G/1274:1277 | NA | NA |
55 | ➜ | 1/G/1260:1263,1/G/1272:1274 | NA | NA |
56 | ➜ | 1/G/1303:1311,1/G/1326:1334 | NA | NA |
57 | ➜ | 1/G/1399:1401,1/G/1501:1504 | NA | NA |
58 | ➜ | 1/G/1401:1404,1/G/1497:1501 | NA | NA |
59 | ➜ | 1/G/1405:1407,1/G/1494:1496 | NA | NA |
60 | ➜ | 1/G/1407:1409,1/G/1491:1494 | NA | NA |
61 | ➜ | 1/G/1410:1412,1/G/1489:1490 | NA | NA |
62 | ➜ | 1/G/1431:1435,1/G/1466:1469 | NA | NA |
63 | ➜ | 1/G/1435:1437,1/G/1464:1466 | NA | NA |
64 | ➜ | 1/G/1439:1449,1/G/1454:1462 | NA | NA |
65 | ➜ | 1/V/24:30,1/V/510:516 | NA | NA |
66 | ➜ | 1/V/36:37,1/V/442:444 | NA | NA |
67 | ➜ | 1/V/40:44,1/V/434:439 | NA | NA |
68 | ➜ | 1/V/81:87,1/V/95:105 | NA | NA |
69 | ➜ | 1/V/183:184,1/V/212:214 | NA | NA |
70 | ➜ | 1/V/188:194,1/V/201:208 | NA | NA |
71 | ➜ | 1/V/239:245,1/V/253:258 | NA | NA |
72 | ➜ | 1/V/288:291,1/V/349:353 | NA | NA |
73 | ➜ | 1/V/291:295,1/V/343:349 | NA | NA |
74 | ➜ | 1/V/481:484,1/V/496:509 | NA | NA |
75 | ➜ | 1/V/564:566,1/V/575:577 | NA | NA |
76 | ➜ | 1/V/672:674,1/V/806:808 | NA | NA |
77 | ➜ | 1/V/674:678,1/V/799:806 | NA | NA |
78 | ➜ | 1/V/697:698,1/V/763:765 | NA | NA |
79 | ➜ | 1/V/701:707,1/V/724:731 | NA | NA |
80 | ➜ | 1/V/738:741,1/V/756:758 | NA | NA |
81 | ➜ | 1/V/837:838,1/V/940:942 | NA | NA |
82 | ➜ | 1/V/844:850,1/V/928:934 | NA | NA |
83 | ➜ | 1/V/857:862,1/V/915:920 | NA | NA |
84 | ➜ | 1/V/862:869,1/V/908:915 | NA | NA |
85 | ➜ | 1/V/870:874,1/V/904:907 | NA | NA |
86 | ➜ | 1/V/875:880,1/V/897:903 | NA | NA |
87 | ➜ | 1/V/952:954,1/V/963:965 | NA | NA |
88 | ➜ | 1/V/993:996,1/V/1159:1161 | NA | NA |
89 | ➜ | 1/V/997:1002,1/V/1153:1158 | NA | NA |
90 | ➜ | 1/V/1004:1011,1/V/1150:1151 | NA | NA |
91 | ➜ | 1/V/1011:1013,1/V/1149:1150 | NA | NA |
92 | ➜ | 1/V/1018:1030,1/V/1124:1144 | NA | NA |
93 | ➜ | 1/V/1031:1034,1/V/1121:1123 | NA | NA |
94 | ➜ | 1/V/1043:1053,1/V/1107:1112 | NA | NA |
95 | ➜ | 1/V/1087:1091,1/V/1100:1102 | NA | NA |
96 | ➜ | 1/V/1166:1168,1/V/1180:1183 | NA | NA |
97 | ➜ | 1/V/1168:1170,1/V/1179:1180 | NA | NA |
98 | ➜ | 1/V/1202:1207,1/V/1239:1243 | NA | NA |
99 | ➜ | 1/V/1208:1215,1/V/1234:1238 | NA | NA |
100 | ➜ | 1/V/1219:1221,1/V/1228:1230 | NA | NA |
101 | ➜ | 1/V/1319:1324,1/V/1330:1333 | NA | NA |
102 | ➜ | 1/V/1351:1355,1/V/1376:1380 | NA | NA |
103 | ➜ | 1/V/1357:1361,1/V/1370:1374 | NA | NA |
104 | ➜ | 1/V/1415:1423,1/V/1574:1587 | NA | NA |
105 | ➜ | 1/V/1431:1435,1/V/1557:1562 | NA | NA |
106 | ➜ | 1/V/1437:1440,1/V/1551:1555 | NA | NA |
107 | ➜ | 1/V/1489:1491,1/V/1499:1500 | NA | NA |
108 | ➜ | 1/V/1651:1656,1/V/2004:2006 | NA | NA |
109 | ➜ | 1/V/1663:1665,1/V/1995:1997 | NA | NA |
110 | ➜ | 1/V/1666:1674,1/V/1990:1994 | NA | NA |
111 | ➜ | 1/V/1686:1691,1/V/1696:1702 | NA | NA |
112 | ➜ | 1/V/1710:1725,1/V/1735:1748 | NA | NA |
113 | ➜ | 1/V/1770:1771,1/V/1980:1982 | NA | NA |
114 | ➜ | 1/V/1776:1778,1/V/1787:1788 | NA | NA |
115 | ➜ | 1/V/1798:1804,1/V/1813:1821 | NA | NA |
116 | ➜ | 1/V/1837:1840,1/V/1902:1903 | NA | NA |
117 | ➜ | 1/V/1841:1842,1/V/1898:1901 | NA | NA |
118 | ➜ | 1/V/1846:1849,1/V/1893:1894 | NA | NA |
119 | ➜ | 1/V/1850:1855,1/V/1887:1892 | NA | NA |
120 | ➜ | 1/V/1856:1860,1/V/1882:1886 | NA | NA |
121 | ➜ | 1/V/1933:1934,1/V/1964:1967 | NA | NA |
122 | ➜ | 1/V/1934:1945,1/V/1961:1964 | NA | NA |
123 | ➜ | 1/V/2050:2052,1/V/2617:2618 | NA | NA |
124 | ➜ | 1/V/2067:2069,1/V/2442:2443 | NA | NA |
125 | ➜ | 1/V/2070:2071,1/V/2438:2441 | NA | NA |
126 | ➜ | 1/V/2081:2083,1/V/2236:2239 | NA | NA |
127 | ➜ | 1/V/2085:2087,1/V/2232:2234 | NA | NA |
128 | ➜ | 1/V/2097:2103,1/V/2187:2192 | NA | NA |
129 | ➜ | 1/V/2103:2104,1/V/2185:2187 | NA | NA |
130 | ➜ | 1/V/2297:2299,1/V/2317:2321 | NA | NA |
131 | ➜ | 1/V/2347:2353,1/V/2364:2370 | NA | NA |
132 | ➜ | 1/V/2400:2403,1/V/2414:2416 | NA | NA |
133 | ➜ | 1/V/2453:2454,1/V/2498:2500 | NA | NA |
134 | ➜ | 1/V/2454:2455,1/V/2496:2498 | NA | NA |
135 | ➜ | 1/V/2456:2461,1/V/2489:2495 | NA | NA |
136 | ➜ | 1/V/2466:2470,1/V/2480:2484 | NA | NA |
137 | ➜ | 1/V/2507:2508,1/V/2580:2582 | NA | NA |
138 | ➜ | 1/V/2510:2512,1/V/2574:2578 | NA | NA |
139 | ➜ | 1/V/2512:2513,1/V/2571:2574 | NA | NA |
140 | ➜ | 1/V/2522:2523,1/V/2540:2543 | NA | NA |
141 | ➜ | 1/V/2591:2592,1/V/2601:2603 | NA | NA |
142 | ➜ | 1/V/2633:2640,1/V/2774:2785 | NA | NA |
143 | ➜ | 1/V/2651:2658,1/V/2663:2669 | NA | NA |
144 | ➜ | 1/V/2680:2685,1/V/2724:2727 | NA | NA |
145 | ➜ | 1/V/2687:2691,1/V/2718:2722 | NA | NA |
146 | ➜ | 1/V/2695:2697,1/V/2710:2714 | NA | NA |
147 | ➜ | 1/V/2737:2742,1/V/2762:2767 | NA | NA |
148 | ➜ | 1/V/2836:2840,1/V/2877:2882 | NA | NA |
149 | ➜ | 1/V/2843:2846,1/V/2870:2874 | NA | NA |
150 | ➜ | 1/V/2847:2852,1/V/2865:2869 | NA | NA |
151 | ➜ | 1/X/16:18,1/X/65:68 | NA | NA |
152 | ➜ | 1/X/23:28,1/X/56:60 | NA | NA |
153 | ➜ | 1/X/30:31,1/X/51:54 | NA | NA |
154 | ➜ | 1/X/71:79,1/X/97:105 | NA | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/DD/13:23 | NA | NA |
2 | ➜ | 1/DD/32:40 | NA | NA |
3 | ➜ | 1/DD/54:62 | NA | NA |
4 | ➜ | 1/G/11:23 | NA | NA |
5 | ➜ | 1/G/79:90 | NA | NA |
6 | ➜ | 1/G/158:163 | NA | NA |
7 | ➜ | 1/G/186E:191B | NA | NA |
8 | ➜ | 1/G/201:216 | NA | NA |
9 | ➜ | 1/G/259:267 | NA | NA |
10 | ➜ | 1/G/296:301 | NA | NA |
11 | ➜ | 1/G/320:333 | NA | NA |
12 | ➜ | 1/G/342:347 | NA | NA |
13 | ➜ | 1/G/379:384 | NA | NA |
14 | ➜ | 1/G/419:424 | NA | NA |
15 | ➜ | 1/G/458:474 | NA | NA |
16 | ➜ | 1/G/522:527 | NA | NA |
17 | ➜ | 1/G/617:623 | NA | NA |
18 | ➜ | 1/G/689:698 | NA | NA |
19 | ➜ | 1/G/726:731 | NA | NA |
20 | ➜ | 1/G/786:796 | NA | NA |
21 | ➜ | 1/G/836:850 | NA | NA |
22 | ➜ | 1/G/862:867 | NA | NA |
23 | ➜ | 1/G/897:902 | NA | NA |
24 | ➜ | 1/G/963:972 | NA | NA |
25 | ➜ | 1/G/1007:1022 | NA | NA |
26 | ➜ | 1/G/1027:1034 | NA | NA |
27 | ➜ | 1/G/1076:1081 | NA | NA |
28 | ➜ | 1/G/1089:1096 | NA | NA |
29 | ➜ | 1/G/1134:1140 | NA | NA |
30 | ➜ | 1/G/1162:1174 | NA | NA |
31 | ➜ | 1/G/1265:1270 | NA | NA |
32 | ➜ | 1/G/1314:1323 | NA | NA |
33 | ➜ | 1/G/1356:1366 | NA | NA |
34 | ➜ | 1/G/1449:1454 | NA | NA |
35 | ➜ | 1/G/1515:1520 | NA | NA |
36 | ➜ | 1/V/59:68 | NA | NA |
37 | ➜ | 1/V/87:95 | NA | NA |
38 | ➜ | 1/V/123:128 | NA | NA |
39 | ➜ | 1/V/136:143 | NA | NA |
40 | ➜ | 1/V/153:173 | NA | NA |
41 | ➜ | 1/V/194:201 | NA | NA |
42 | ➜ | 1/V/224:231 | NA | NA |
43 | ➜ | 1/V/246:252 | NA | NA |
44 | ➜ | 1/V/270I:270Q | NA | NA |
45 | ➜ | 1/V/304:313 | NA | NA |
46 | ➜ | 1/V/319:323 | NA | NA |
47 | ➜ | 1/V/327:335 | NA | NA |
48 | ➜ | 1/V/382:392 | NA | NA |
49 | ➜ | 1/V/410:417 | NA | NA |
50 | ➜ | 1/V/462:467 | NA | NA |
51 | ➜ | 1/V/487:493 | NA | NA |
52 | ➜ | 1/V/544:549 | NA | NA |
53 | ➜ | 1/V/566:575 | NA | NA |
54 | ➜ | 1/V/629:635 | NA | NA |
55 | ➜ | 1/V/640:648 | NA | NA |
56 | ➜ | 1/V/712:719 | NA | NA |
57 | ➜ | 1/V/744:753 | NA | NA |
58 | ➜ | 1/V/779:785 | NA | NA |
59 | ➜ | 1/V/826:831 | NA | NA |
60 | ➜ | 1/V/880:897 | NA | NA |
61 | ➜ | 1/V/955:962 | NA | NA |
62 | ➜ | 1/V/978:985 | NA | NA |
63 | ➜ | 1/V/1064:1074 | NA | NA |
64 | ➜ | 1/V/1092:1099 | NA | NA |
65 | ➜ | 1/V/1170:1179 | NA | NA |
66 | ➜ | 1/V/1221:1228 | NA | NA |
67 | ➜ | 1/V/1281:1289 | NA | NA |
68 | ➜ | 1/V/1324:1330 | NA | NA |
69 | ➜ | 1/V/1362:1369 | NA | NA |
70 | ➜ | 1/V/1388:1399 | NA | NA |
71 | ➜ | 1/V/1448:1463 | NA | NA |
72 | ➜ | 1/V/1491:1499 | NA | NA |
73 | ➜ | 1/V/1612:1619 | NA | NA |
74 | ➜ | 1/V/1629:1637 | NA | NA |
75 | ➜ | 1/V/1691:1696 | NA | NA |
76 | ➜ | 1/V/1725:1735 | NA | NA |
77 | ➜ | 1/V/1752:1756 | NA | NA |
78 | ➜ | 1/V/1778:1787 | NA | NA |
79 | ➜ | 1/V/1806:1811 | NA | NA |
80 | ➜ | 1/V/1863:1879 | NA | NA |
81 | ➜ | 1/V/1909:1921 | NA | NA |
82 | ➜ | 1/V/1949:1957 | NA | NA |
83 | ➜ | 1/V/2027:2036 | NA | NA |
84 | ➜ | 1/V/2143:2148 | NA | NA |
85 | ➜ | 1/V/2209:2215 | NA | NA |
86 | ➜ | 1/V/2248:2256 | NA | NA |
87 | ➜ | 1/V/2264:2276 | NA | NA |
88 | ➜ | 1/V/2303:2313 | NA | NA |
89 | ➜ | 1/V/2324:2331 | NA | NA |
90 | ➜ | 1/V/2355:2362 | NA | NA |
91 | ➜ | 1/V/2374:2379 | NA | NA |
92 | ➜ | 1/V/2404:2413 | NA | NA |
93 | ➜ | 1/V/2471:2479 | NA | NA |
94 | ➜ | 1/V/2528:2535 | NA | NA |
95 | ➜ | 1/V/2551:2557 | NA | NA |
96 | ➜ | 1/V/2594:2599 | NA | NA |
97 | ➜ | 1/V/2658:2663 | NA | NA |
98 | ➜ | 1/V/2701:2706 | NA | NA |
99 | ➜ | 1/V/2745:2759 | NA | NA |
100 | ➜ | 1/V/2819:2827 | NA | NA |
101 | ➜ | 1/V/2856:2861 | NA | NA |
102 | ➜ | 1/X/33:49 | NA | NA |
103 | ➜ | 1/X/86:90 | NA | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/G/46:47,1/G/361:367,1/G/393:395 | NA | NA |
2 | ➜ | 1/G/586:590,1/G/649:654,1/G/754:755 | NA | NA |
3 | ➜ | 1/G/671:673,1/G/717:725,1/G/732:736 | NA | NA |
4 | ➜ | 1/G/826:830,1/G/856:861,1/G/868:874 | NA | NA |
5 | ➜ | 1/G/943:947,1/G/1234:1237,1/G/1337:1340 | NA | NA |
6 | ➜ | 1/G/955:962,1/G/973:984,1/G/1221:1225 | NA | NA |
7 | ➜ | 1/G/990:997,1/G/1044:1047,1/G/1210:1215 | NA | NA |
8 | ➜ | 1/G/1002:1007,1/G/1022:1027,1/G/1034:1038 | NA | NA |
9 | ➜ | 1/G/1073:1075,1/G/1082:1087,1/G/1098:1102 | NA | NA |
10 | ➜ | 1/G/1116:1118,1/G/1155:1158,1/G/1181:1184 | NA | NA |
11 | ➜ | 1/G/1237:1241,1/G/1296:1303,1/G/1334:1337 | NA | NA |
12 | ➜ | 1/V/30:31,1/V/474:481,1/V/509:510 | NA | NA |
13 | ➜ | 1/V/56:57,1/V/70:76,1/V/110:114 | NA | NA |
14 | ➜ | 1/V/683:689,1/V/773:777,1/V/787:794 | NA | NA |
15 | ➜ | 1/V/698:700,1/V/732:736,1/V/760:763 | NA | NA |
16 | ➜ | 1/V/1298:1303,1/V/1625:1628,1/V/1638:1642 | NA | NA |
17 | ➜ | 1/V/1306:1309,1/V/1605:1611,1/V/1620:1622 | NA | NA |
18 | ➜ | 1/V/2090:2093,1/V/2196:2205,1/V/2219:2229 | NA | NA |
19 | ➜ | 1/V/2295:2297,1/V/2321:2323,1/V/2332:2337 | NA | NA |
20 | ➜ | 1/V/2517:2520,1/V/2545:2547,1/V/2561:2567 | NA | NA |
21 | ➜ | 1/X/11:16,1/X/68:70,1/X/106:109 | NA | NA |
Problematic loops
No problematic loops
Coloring options: