5ZLU Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5ZLU_001 | 1/DD/13:23 | No text annotation Not in a motif group | ||
| HL_5ZLU_002 | 1/DD/32:40 | tRNA anticodon loop Not in a motif group | homologous HL_6UFG_007 HL_53597.2 | |
| HL_5ZLU_003 | 1/DD/54:62 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA | |
| HL_5ZLU_004 | 1/G/11:23 | No text annotation Not in a motif group | ||
| HL_5ZLU_005 | 1/G/79:90 | No text annotation Not in a motif group | ||
| HL_5ZLU_006 | 1/G/158:163 | GNRA Not in a motif group | geometric HL_5TBW_019 HL_42097.1 | |
| HL_5ZLU_007 | 1/G/186E:191B | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_5ZLU_008 | 1/G/201:216 | No text annotation Not in a motif group | ||
| HL_5ZLU_009 | 1/G/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_5ZLU_010 | 1/G/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_5ZLU_011 | 1/G/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_5ZLU_012 | 1/G/342:347 | UNCG Not in a motif group | homologous HL_5J7L_009 HL_03562.2 | |
| HL_5ZLU_013 | 1/G/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_5ZLU_014 | 1/G/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_5ZLU_015 | 1/G/458:474 | No text annotation Not in a motif group | homologous HL_6CZR_083 HL_43656.2 | |
| HL_5ZLU_016 | 1/G/522:527 | Other HL Not in a motif group | geometric HL_1MFQ_001 HL_87030.2 | |
| HL_5ZLU_017 | 1/G/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_5ZLU_018 | 1/G/689:698 | No text annotation Not in a motif group | homologous HL_6CZR_086 HL_12326.1 | |
| HL_5ZLU_019 | 1/G/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_5ZLU_020 | 1/G/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_5ZLU_021 | 1/G/836:850 | No text annotation Not in a motif group | ||
| HL_5ZLU_022 | 1/G/862:867 | GNRA Not in a motif group | homologous HL_6CZR_090 HL_87030.2 | |
| HL_5ZLU_023 | 1/G/897:902 | GNRA Not in a motif group | homologous HL_6CZR_091 HL_42097.1 | |
| HL_5ZLU_024 | 1/G/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_5ZLU_025 | 1/G/1007:1022 | No text annotation Not in a motif group | ||
| HL_5ZLU_026 | 1/G/1027:1034 | No text annotation Not in a motif group | ||
| HL_5ZLU_027 | 1/G/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_5ZLU_028 | 1/G/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_5ZLU_029 | 1/G/1134:1140 | No text annotation Not in a motif group | homologous HL_4LFB_026 HL_03562.2 | |
| HL_5ZLU_030 | 1/G/1162:1174 | No text annotation Not in a motif group | ||
| HL_5ZLU_031 | 1/G/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_5ZLU_032 | 1/G/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_5ZLU_033 | 1/G/1356:1366 | No text annotation Not in a motif group | ||
| HL_5ZLU_034 | 1/G/1449:1454 | UNCG Not in a motif group | geometric HL_5J7L_030 HL_03562.2 | |
| HL_5ZLU_035 | 1/G/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_5ZLU_036 | 1/V/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_5ZLU_037 | 1/V/87:95 | No text annotation Not in a motif group | geometric HL_7RQB_002 HL_96598.1 | |
| HL_5ZLU_038 | 1/V/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_5ZLU_039 | 1/V/136:143 | No text annotation Not in a motif group | ||
| HL_5ZLU_040 | 1/V/153:173 | No text annotation Not in a motif group | homologous HL_7RQB_005 NA | |
| HL_5ZLU_041 | 1/V/194:201 | No text annotation Not in a motif group | geometric HL_5TBW_001 HL_06192.2 | |
| HL_5ZLU_042 | 1/V/224:231 | No text annotation Not in a motif group | geometric HL_6CF2_001 HL_24068.2 | |
| HL_5ZLU_043 | 1/V/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_5ZLU_044 | 1/V/270I:270Q | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_5ZLU_045 | 1/V/304:313 | No text annotation Not in a motif group | ||
| HL_5ZLU_046 | 1/V/319:323 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_75407.1 | |
| HL_5ZLU_047 | 1/V/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_5ZLU_048 | 1/V/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_5ZLU_049 | 1/V/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.1 | |
| HL_5ZLU_050 | 1/V/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_5ZLU_051 | 1/V/487:493 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
| HL_5ZLU_052 | 1/V/544:549 | No text annotation Not in a motif group | homologous HL_7RQB_017 NA | |
| HL_5ZLU_053 | 1/V/566:575 | No text annotation Not in a motif group | geometric HL_7A0S_018 HL_89380.2 | |
| HL_5ZLU_054 | 1/V/629:635 | No text annotation Not in a motif group | homologous HL_7A0S_020 HL_42097.1 | |
| HL_5ZLU_055 | 1/V/640:648 | No text annotation Not in a motif group | ||
| HL_5ZLU_056 | 1/V/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_5ZLU_057 | 1/V/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_5ZLU_058 | 1/V/779:785 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_5ZLU_059 | 1/V/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_5ZLU_060 | 1/V/880:897 | No text annotation Not in a motif group | ||
| HL_5ZLU_061 | 1/V/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_5ZLU_062 | 1/V/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_5ZLU_063 | 1/V/1064:1074 | No text annotation Not in a motif group | ||
| HL_5ZLU_064 | 1/V/1092:1099 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.2 | |
| HL_5ZLU_065 | 1/V/1170:1179 | No text annotation Not in a motif group | ||
| HL_5ZLU_066 | 1/V/1221:1228 | No text annotation Not in a motif group | ||
| HL_5ZLU_067 | 1/V/1281:1289 | No text annotation Not in a motif group | homologous HL_7A0S_032 HL_89380.2 | |
| HL_5ZLU_068 | 1/V/1324:1330 | No text annotation Not in a motif group | homologous HL_4WF9_033 HL_46680.1 | |
| HL_5ZLU_069 | 1/V/1362:1369 | No text annotation Not in a motif group | ||
| HL_5ZLU_070 | 1/V/1388:1399 | No text annotation Not in a motif group | ||
| HL_5ZLU_071 | 1/V/1448:1463 | No text annotation Not in a motif group | ||
| HL_5ZLU_072 | 1/V/1491:1499 | No text annotation Not in a motif group | ||
| HL_5ZLU_073 | 1/V/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_5ZLU_074 | 1/V/1629:1637 | No text annotation Not in a motif group | ||
| HL_5ZLU_075 | 1/V/1691:1696 | No text annotation Not in a motif group | homologous HL_7A0S_042 HL_03562.2 | |
| HL_5ZLU_076 | 1/V/1725:1735 | No text annotation Not in a motif group | ||
| HL_5ZLU_077 | 1/V/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_5ZLU_078 | 1/V/1778:1787 | No text annotation Not in a motif group | ||
| HL_5ZLU_079 | 1/V/1806:1811 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_5ZLU_080 | 1/V/1863:1879 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_5ZLU_081 | 1/V/1909:1921 | No text annotation Not in a motif group | ||
| HL_5ZLU_082 | 1/V/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_5ZLU_083 | 1/V/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_5ZLU_084 | 1/V/2143:2148 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_5ZLU_085 | 1/V/2209:2215 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_98426.1 | |
| HL_5ZLU_086 | 1/V/2248:2256 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.2 | |
| HL_5ZLU_087 | 1/V/2264:2276 | No text annotation Not in a motif group | homologous HL_7A0S_053 HL_19870.6 | |
| HL_5ZLU_088 | 1/V/2303:2313 | No text annotation Not in a motif group | homologous HL_4WF9_051 NA | |
| HL_5ZLU_089 | 1/V/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_5ZLU_090 | 1/V/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_5ZLU_091 | 1/V/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
| HL_5ZLU_092 | 1/V/2404:2413 | No text annotation Not in a motif group | homologous HL_4WF9_055 HL_30784.2 | |
| HL_5ZLU_093 | 1/V/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_5ZLU_094 | 1/V/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_5ZLU_095 | 1/V/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_5ZLU_096 | 1/V/2594:2599 | GNRA Not in a motif group | homologous HL_4WF9_059 HL_42097.1 | |
| HL_5ZLU_097 | 1/V/2658:2663 | GNRA Not in a motif group | homologous HL_4WF9_060 HL_42097.1 | |
| HL_5ZLU_098 | 1/V/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_5ZLU_099 | 1/V/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_5ZLU_100 | 1/V/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_5ZLU_101 | 1/V/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 | |
| HL_5ZLU_102 | 1/X/33:49 | No text annotation Not in a motif group | ||
| HL_5ZLU_103 | 1/X/86:90 | GNRA Not in a motif group | homologous HL_4V9F_072 HL_42097.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5ZLU_001 | 1/DD/28:29, 1/DD/43:45 | Single stack bend Not in a motif group | geometric IL_7A0S_005 IL_76488.2 | |
| IL_5ZLU_002 | 1/G/30:32, 1/G/552:553 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.2 | |
| IL_5ZLU_003 | 1/G/44:45, 1/G/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_5ZLU_004 | 1/G/47:54, 1/G/357:361 | No text annotation Not in a motif group | ||
| IL_5ZLU_005 | 1/G/54:56, 1/G/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_5ZLU_006 | 1/G/63:66, 1/G/103:104 | Multiple bulged bases Not in a motif group | geometric IL_4LFB_005 IL_76389.1 | |
| IL_5ZLU_007 | 1/G/66:76, 1/G/93:103 | No text annotation Not in a motif group | ||
| IL_5ZLU_008 | 1/G/128:131, 1/G/231:233 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_009 IL_82068.2 | |
| IL_5ZLU_009 | 1/G/132:136, 1/G/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_5ZLU_010 | 1/G/148:154, 1/G/168:174 | No text annotation Not in a motif group | ||
| IL_5ZLU_011 | 1/G/154:156, 1/G/165:168 | No text annotation Not in a motif group | ||
| IL_5ZLU_012 | 1/G/156:158, 1/G/163:165 | Isolated cWS basepair Not in a motif group | geometric IL_5TBW_047 IL_52767.2 | |
| IL_5ZLU_013 | 1/G/185:186D, 1/G/191C:192 | No text annotation Not in a motif group | ||
| IL_5ZLU_014 | 1/G/242:247, 1/G/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_5ZLU_015 | 1/G/248:254, 1/G/272:276 | No text annotation Not in a motif group | ||
| IL_5ZLU_016 | 1/G/292:293, 1/G/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_5ZLU_017 | 1/G/367:369, 1/G/392:393 | Single bulged U Not in a motif group | geometric IL_4LFB_014 IL_83039.13 | |
| IL_5ZLU_018 | 1/G/371:375, 1/G/389:390 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_5ZLU_019 | 1/G/375:376, 1/G/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_5ZLU_020 | 1/G/376:378, 1/G/386:387 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_5ZLU_021 | 1/G/378:379, 1/G/384:386 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_5ZLU_022 | 1/G/409:416, 1/G/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_5ZLU_023 | 1/G/446:450, 1/G/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_6CZR_130 IL_88269.3 | |
| IL_5ZLU_024 | 1/G/450:455, 1/G/477:483 | No text annotation Not in a motif group | homologous IL_4LFB_019 IL_11882.1 | |
| IL_5ZLU_025 | 1/G/504:511, 1/G/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_5ZLU_026 | 1/G/514:521, 1/G/528:537 | No text annotation Not in a motif group | ||
| IL_5ZLU_027 | 1/G/569:575, 1/G/880:881 | No text annotation Not in a motif group | homologous IL_6CZR_134 IL_69996.1 | |
| IL_5ZLU_028 | 1/G/580:584, 1/G/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_5ZLU_029 | 1/G/594:596, 1/G/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_5ZLU_030 | 1/G/597:599, 1/G/639:643 | 8-nt loop receptor Not in a motif group | geometric IL_6CK5_002 IL_93341.1 | |
| IL_5ZLU_031 | 1/G/605:613, 1/G/627:633 | No text annotation Not in a motif group | ||
| IL_5ZLU_032 | 1/G/654:658, 1/G/747:754 | No text annotation Not in a motif group | ||
| IL_5ZLU_033 | 1/G/659:661, 1/G/745:746 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_5ZLU_034 | 1/G/661:666, 1/G/740:745 | No text annotation Not in a motif group | ||
| IL_5ZLU_035 | 1/G/666:671, 1/G/736:740 | No text annotation Not in a motif group | ||
| IL_5ZLU_036 | 1/G/673:681, 1/G/710:717 | No text annotation Not in a motif group | ||
| IL_5ZLU_037 | 1/G/681:682, 1/G/708:710 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_5ZLU_038 | 1/G/683:689, 1/G/698:707 | No text annotation Not in a motif group | ||
| IL_5ZLU_039 | 1/G/774:783, 1/G/799:805 | No text annotation Not in a motif group | ||
| IL_5ZLU_040 | 1/G/887:895, 1/G/904:910 | 9x7 Sarcin-Ricin with inserted C; G-bulge Not in a motif group | homologous IL_6CZR_146 IL_68633.1 | |
| IL_5ZLU_041 | 1/G/922:923, 1/G/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_5ZLU_042 | 1/G/925:927, 1/G/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_5ZLU_043 | 1/G/933:935, 1/G/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_5ZLU_044 | 1/G/953:954, 1/G/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_5ZLU_045 | 1/G/1048:1050, 1/G/1208:1209 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.13 | |
| IL_5ZLU_046 | 1/G/1051:1056, 1/G/1204:1207 | tSH-tHW Not in a motif group | geometric IL_5UNE_005 IL_21270.1 | |
| IL_5ZLU_047 | 1/G/1057:1058, 1/G/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_5ZLU_048 | 1/G/1059:1061, 1/G/1195:1198 | No text annotation Not in a motif group | homologous IL_4LFB_047 IL_95997.1 | |
| IL_5ZLU_049 | 1/G/1124:1128, 1/G/1143:1149 | No text annotation Not in a motif group | homologous IL_4LFB_048 IL_85222.1 | |
| IL_5ZLU_050 | 1/G/1128:1133, 1/G/1141:1143 | No text annotation Not in a motif group | ||
| IL_5ZLU_051 | 1/G/1158:1162, 1/G/1174:1181 | No text annotation Not in a motif group | ||
| IL_5ZLU_052 | 1/G/1246:1253, 1/G/1284:1291 | No text annotation Not in a motif group | ||
| IL_5ZLU_053 | 1/G/1255:1258, 1/G/1277:1282 | No text annotation Not in a motif group | ||
| IL_5ZLU_054 | 1/G/1258:1260, 1/G/1274:1277 | No text annotation Not in a motif group | ||
| IL_5ZLU_055 | 1/G/1260:1263, 1/G/1272:1274 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_411 IL_46796.1 | |
| IL_5ZLU_056 | 1/G/1303:1311, 1/G/1326:1334 | No text annotation Not in a motif group | ||
| IL_5ZLU_057 | 1/G/1399:1401, 1/G/1501:1504 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_5ZLU_058 | 1/G/1401:1404, 1/G/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_5ZLU_059 | 1/G/1405:1407, 1/G/1494:1496 | No text annotation Not in a motif group | geometric IL_4WF9_020 IL_95997.1 | |
| IL_5ZLU_060 | 1/G/1407:1409, 1/G/1491:1494 | No text annotation Not in a motif group | ||
| IL_5ZLU_061 | 1/G/1410:1412, 1/G/1489:1490 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_5ZLU_062 | 1/G/1431:1435, 1/G/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_6CZR_170 IL_07235.1 | |
| IL_5ZLU_063 | 1/G/1435:1437, 1/G/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_5ZLU_064 | 1/G/1439:1449, 1/G/1454:1462 | No text annotation Not in a motif group | ||
| IL_5ZLU_065 | 1/V/24:30, 1/V/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_4WF9_001 IL_66414.6 | |
| IL_5ZLU_066 | 1/V/36:37, 1/V/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
| IL_5ZLU_067 | 1/V/40:44, 1/V/434:439 | No text annotation Not in a motif group | ||
| IL_5ZLU_068 | 1/V/81:87, 1/V/95:105 | No text annotation Not in a motif group | ||
| IL_5ZLU_069 | 1/V/183:184, 1/V/212:214 | Single stack bend Not in a motif group | homologous IL_7A0S_005 IL_76488.2 | |
| IL_5ZLU_070 | 1/V/188:194, 1/V/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_250 IL_04346.7 | |
| IL_5ZLU_071 | 1/V/239:245, 1/V/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_5ZLU_072 | 1/V/288:291, 1/V/349:353 | No text annotation Not in a motif group | ||
| IL_5ZLU_073 | 1/V/291:295, 1/V/343:349 | No text annotation Not in a motif group | ||
| IL_5ZLU_074 | 1/V/481:484, 1/V/496:509 | No text annotation Not in a motif group | geometric IL_7RQB_014 IL_60992.6 | |
| IL_5ZLU_075 | 1/V/564:566, 1/V/575:577 | No text annotation Not in a motif group | homologous IL_4WF9_017 IL_95997.1 | |
| IL_5ZLU_076 | 1/V/672:674, 1/V/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
| IL_5ZLU_077 | 1/V/674:678, 1/V/799:806 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_4WF9_021 IL_17470.6 | |
| IL_5ZLU_078 | 1/V/697:698, 1/V/763:765 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_37497.2 | |
| IL_5ZLU_079 | 1/V/701:707, 1/V/724:731 | No text annotation Not in a motif group | ||
| IL_5ZLU_080 | 1/V/738:741, 1/V/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_5ZLU_081 | 1/V/837:838, 1/V/940:942 | Single stack bend Not in a motif group | homologous IL_7A0S_022 IL_92001.1 | |
| IL_5ZLU_082 | 1/V/844:850, 1/V/928:934 | No text annotation Not in a motif group | ||
| IL_5ZLU_083 | 1/V/857:862, 1/V/915:920 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_5ZLU_084 | 1/V/862:869, 1/V/908:915 | No text annotation Not in a motif group | ||
| IL_5ZLU_085 | 1/V/870:874, 1/V/904:907 | No text annotation Not in a motif group | ||
| IL_5ZLU_086 | 1/V/875:880, 1/V/897:903 | No text annotation Not in a motif group | ||
| IL_5ZLU_087 | 1/V/952:954, 1/V/963:965 | No text annotation Not in a motif group | homologous IL_7A0S_031 IL_95997.1 | |
| IL_5ZLU_088 | 1/V/993:996, 1/V/1159:1161 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_009 IL_82068.2 | |
| IL_5ZLU_089 | 1/V/997:1002, 1/V/1153:1158 | UAA/GAN with extra cWW Not in a motif group | geometric IL_7RQB_107 IL_49767.5 | |
| IL_5ZLU_090 | 1/V/1004:1011, 1/V/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.7 | |
| IL_5ZLU_091 | 1/V/1011:1013, 1/V/1149:1150 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_5ZLU_092 | 1/V/1018:1030, 1/V/1124:1144 | No text annotation Not in a motif group | ||
| IL_5ZLU_093 | 1/V/1031:1034, 1/V/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_041 IL_82068.2 | |
| IL_5ZLU_094 | 1/V/1043:1053, 1/V/1107:1112 | No text annotation Not in a motif group | ||
| IL_5ZLU_095 | 1/V/1087:1091, 1/V/1100:1102 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_5ZLU_096 | 1/V/1166:1168, 1/V/1180:1183 | No text annotation Not in a motif group | geometric IL_4M4O_001 IL_95997.1 | |
| IL_5ZLU_097 | 1/V/1168:1170, 1/V/1179:1180 | Single stack bend Not in a motif group | geometric IL_5J7L_249 IL_76488.2 | |
| IL_5ZLU_098 | 1/V/1202:1207, 1/V/1239:1243 | No text annotation Not in a motif group | ||
| IL_5ZLU_099 | 1/V/1208:1215, 1/V/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_5ZLU_100 | 1/V/1219:1221, 1/V/1228:1230 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_5ZLU_101 | 1/V/1319:1324, 1/V/1330:1333 | No text annotation Not in a motif group | ||
| IL_5ZLU_102 | 1/V/1351:1355, 1/V/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_5ZLU_103 | 1/V/1357:1361, 1/V/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_4WF9_052 IL_17136.1 | |
| IL_5ZLU_104 | 1/V/1415:1423, 1/V/1574:1587 | No text annotation Not in a motif group | ||
| IL_5ZLU_105 | 1/V/1431:1435, 1/V/1557:1562 | No text annotation Not in a motif group | ||
| IL_5ZLU_106 | 1/V/1437:1440, 1/V/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_5ZLU_107 | 1/V/1489:1491, 1/V/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
| IL_5ZLU_108 | 1/V/1651:1656, 1/V/2004:2006 | No text annotation Not in a motif group | homologous IL_4WF9_062 IL_12566.2 | |
| IL_5ZLU_109 | 1/V/1663:1665, 1/V/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.7 | |
| IL_5ZLU_110 | 1/V/1666:1674, 1/V/1990:1994 | No text annotation Not in a motif group | ||
| IL_5ZLU_111 | 1/V/1686:1691, 1/V/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
| IL_5ZLU_112 | 1/V/1710:1725, 1/V/1735:1748 | No text annotation Not in a motif group | ||
| IL_5ZLU_113 | 1/V/1770:1771, 1/V/1980:1982 | Single bulged A Not in a motif group | homologous IL_4WF9_068 IL_37497.2 | |
| IL_5ZLU_114 | 1/V/1776:1778, 1/V/1787:1788 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_76488.2 | |
| IL_5ZLU_115 | 1/V/1798:1804, 1/V/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_5ZLU_116 | 1/V/1837:1840, 1/V/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_5ZLU_117 | 1/V/1841:1842, 1/V/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_4WF9_071 IL_69996.1 | |
| IL_5ZLU_118 | 1/V/1846:1849, 1/V/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_5ZLU_119 | 1/V/1850:1855, 1/V/1887:1892 | No text annotation Not in a motif group | ||
| IL_5ZLU_120 | 1/V/1856:1860, 1/V/1882:1886 | Triple sheared Not in a motif group | homologous IL_7A0S_070 IL_56467.8 | |
| IL_5ZLU_121 | 1/V/1933:1934, 1/V/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 IL_59677.2 | |
| IL_5ZLU_122 | 1/V/1934:1945, 1/V/1961:1964 | No text annotation Not in a motif group | geometric IL_7A0S_072 IL_81589.2 | |
| IL_5ZLU_123 | 1/V/2050:2052, 1/V/2617:2618 | Major groove platform Not in a motif group | homologous IL_4WF9_078 IL_27635.1 | |
| IL_5ZLU_124 | 1/V/2067:2069, 1/V/2442:2443 | Single bulged U Not in a motif group | homologous IL_4WF9_080 IL_83039.13 | |
| IL_5ZLU_125 | 1/V/2070:2071, 1/V/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_5ZLU_126 | 1/V/2081:2083, 1/V/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_5ZLU_127 | 1/V/2085:2087, 1/V/2232:2234 | No text annotation Not in a motif group | homologous IL_7A0S_078 IL_95997.1 | |
| IL_5ZLU_128 | 1/V/2097:2103, 1/V/2187:2192 | No text annotation Not in a motif group | ||
| IL_5ZLU_129 | 1/V/2103:2104, 1/V/2185:2187 | No text annotation Not in a motif group | ||
| IL_5ZLU_130 | 1/V/2297:2299, 1/V/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_082 IL_38958.7 | |
| IL_5ZLU_131 | 1/V/2347:2353, 1/V/2364:2370 | No text annotation Not in a motif group | ||
| IL_5ZLU_132 | 1/V/2400:2403, 1/V/2414:2416 | Major groove platform with extra pair Not in a motif group | geometric IL_3V7E_003 IL_47263.2 | |
| IL_5ZLU_133 | 1/V/2453:2454, 1/V/2498:2500 | Single stack bend Not in a motif group | homologous IL_7A0S_083 IL_76488.2 | |
| IL_5ZLU_134 | 1/V/2454:2455, 1/V/2496:2498 | Major groove platform Not in a motif group | geometric IL_4V9F_082 IL_27635.1 | |
| IL_5ZLU_135 | 1/V/2456:2461, 1/V/2489:2495 | No text annotation Not in a motif group | ||
| IL_5ZLU_136 | 1/V/2466:2470, 1/V/2480:2484 | Triple sheared Not in a motif group | homologous IL_7A0S_087 IL_56467.8 | |
| IL_5ZLU_137 | 1/V/2507:2508, 1/V/2580:2582 | Major groove platform Not in a motif group | homologous IL_7A0S_088 IL_76223.2 | |
| IL_5ZLU_138 | 1/V/2510:2512, 1/V/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7A0S_089 IL_90933.2 | |
| IL_5ZLU_139 | 1/V/2512:2513, 1/V/2571:2574 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.2 | |
| IL_5ZLU_140 | 1/V/2522:2523, 1/V/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_5ZLU_141 | 1/V/2591:2592, 1/V/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_5ZLU_142 | 1/V/2633:2640, 1/V/2774:2785 | No text annotation Not in a motif group | ||
| IL_5ZLU_143 | 1/V/2651:2658, 1/V/2663:2669 | No text annotation Not in a motif group | ||
| IL_5ZLU_144 | 1/V/2680:2685, 1/V/2724:2727 | No text annotation Not in a motif group | ||
| IL_5ZLU_145 | 1/V/2687:2691, 1/V/2718:2722 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
| IL_5ZLU_146 | 1/V/2695:2697, 1/V/2710:2714 | No text annotation Not in a motif group | geometric IL_5VSU_002 IL_55351.2 | |
| IL_5ZLU_147 | 1/V/2737:2742, 1/V/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_5ZLU_148 | 1/V/2836:2840, 1/V/2877:2882 | Other IL Not in a motif group | geometric IL_4WF9_084 IL_05145.2 | |
| IL_5ZLU_149 | 1/V/2843:2846, 1/V/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_5ZLU_150 | 1/V/2847:2852, 1/V/2865:2869 | No text annotation Not in a motif group | homologous IL_7A0S_101 IL_83162.5 | |
| IL_5ZLU_151 | 1/X/16:18, 1/X/65:68 | No text annotation Not in a motif group | geometric IL_4V88_455 IL_10023.1 | |
| IL_5ZLU_152 | 1/X/23:28, 1/X/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
| IL_5ZLU_153 | 1/X/30:31, 1/X/51:54 | No text annotation Not in a motif group | ||
| IL_5ZLU_154 | 1/X/71:79, 1/X/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5ZLU_001 | 1/G/46:47, 1/G/361:367, 1/G/393:395 | No text annotation Not in a motif group | ||
| J3_5ZLU_002 | 1/G/586:590, 1/G/649:654, 1/G/754:755 | No text annotation Not in a motif group | ||
| J3_5ZLU_003 | 1/G/671:673, 1/G/717:725, 1/G/732:736 | No text annotation Not in a motif group | ||
| J3_5ZLU_004 | 1/G/826:830, 1/G/856:861, 1/G/868:874 | No text annotation Not in a motif group | ||
| J3_5ZLU_005 | 1/G/943:947, 1/G/1234:1237, 1/G/1337:1340 | No text annotation Not in a motif group | ||
| J3_5ZLU_006 | 1/G/955:962, 1/G/973:984, 1/G/1221:1225 | No text annotation Not in a motif group | ||
| J3_5ZLU_007 | 1/G/990:997, 1/G/1044:1047, 1/G/1210:1215 | No text annotation Not in a motif group | ||
| J3_5ZLU_008 | 1/G/1002:1007, 1/G/1022:1027, 1/G/1034:1038 | No text annotation Not in a motif group | ||
| J3_5ZLU_009 | 1/G/1073:1075, 1/G/1082:1087, 1/G/1098:1102 | No text annotation Not in a motif group | ||
| J3_5ZLU_010 | 1/G/1116:1118, 1/G/1155:1158, 1/G/1181:1184 | No text annotation Not in a motif group | homologous J3_4LFB_008 NA | |
| J3_5ZLU_011 | 1/G/1237:1241, 1/G/1296:1303, 1/G/1334:1337 | No text annotation Not in a motif group | ||
| J3_5ZLU_012 | 1/V/30:31, 1/V/474:481, 1/V/509:510 | No text annotation Not in a motif group | ||
| J3_5ZLU_013 | 1/V/56:57, 1/V/70:76, 1/V/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_5ZLU_014 | 1/V/683:689, 1/V/773:777, 1/V/787:794 | No text annotation Not in a motif group | ||
| J3_5ZLU_015 | 1/V/698:700, 1/V/732:736, 1/V/760:763 | No text annotation Not in a motif group | homologous J3_4WF9_003 NA | |
| J3_5ZLU_016 | 1/V/1298:1303, 1/V/1625:1628, 1/V/1638:1642 | No text annotation Not in a motif group | ||
| J3_5ZLU_017 | 1/V/1306:1309, 1/V/1605:1611, 1/V/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_5ZLU_018 | 1/V/2090:2093, 1/V/2196:2205, 1/V/2219:2229 | No text annotation Not in a motif group | ||
| J3_5ZLU_019 | 1/V/2295:2297, 1/V/2321:2323, 1/V/2332:2337 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
| J3_5ZLU_020 | 1/V/2517:2520, 1/V/2545:2547, 1/V/2561:2567 | No text annotation Not in a motif group | ||
| J3_5ZLU_021 | 1/X/11:16, 1/X/68:70, 1/X/106:109 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: