Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/DD/13:23NANA
1/DD/32:40NANA
1/DD/54:62NANA
1/G/11:23NANA
1/G/79:90NANA
1/G/158:163NANA
1/G/186E:191BNANA
1/G/201:216NANA
1/G/259:267NANA
1/G/296:301NANA
1/G/320:333NANA
1/G/342:347NANA
1/G/379:384NANA
1/G/419:424NANA
1/G/458:474NANA
1/G/522:527NANA
1/G/617:623NANA
1/G/689:698NANA
1/G/726:731NANA
1/G/786:796NANA
1/G/836:850NANA
1/G/862:867NANA
1/G/897:902NANA
1/G/963:972NANA
1/G/1007:1022NANA
1/G/1027:1034NANA
1/G/1076:1081NANA
1/G/1089:1096NANA
1/G/1134:1140NANA
1/G/1162:1174NANA
1/G/1265:1270NANA
1/G/1314:1323NANA
1/G/1356:1366NANA
1/G/1449:1454NANA
1/G/1515:1520NANA
1/V/59:68
homologous
HL_7RQB_001
NA

HL_29414.1*
1/V/87:95
geometric
HL_7RQB_002
NA

HL_17926.5*
1/V/123:128
homologous
HL_7RQB_003
NA

HL_62869.3*
1/V/136:143NANA
1/V/153:173
homologous
HL_7RQB_005
NA
1/V/194:201
geometric
HL_5TBW_001
NA

HL_23481.5*
1/V/224:231
geometric
HL_6CF2_001
NA

HL_80105.3*
1/V/246:252
homologous
HL_7RQB_008
NA

HL_67216.5*
1/V/270I:270Q
geometric
HL_2ZZM_002
NA

HL_18218.2*
1/V/304:313NANA
1/V/319:323
homologous
HL_7RQB_011
NA

HL_98557.5*
1/V/327:335
homologous
HL_7RQB_012
NA

HL_08002.6*
1/V/382:392
homologous
HL_7RQB_013
NA

HL_91503.3*
1/V/410:417
homologous
HL_7RQB_014
NA

HL_32512.8*
1/V/462:467
homologous
HL_7RQB_015
NA

HL_43074.18*
1/V/487:493
homologous
HL_7RQB_016
NA

HL_43074.18*
1/V/544:549
homologous
HL_7RQB_017
NA
1/V/566:575
geometric
HL_7A0S_018
NA

HL_33239.17*
1/V/629:635
homologous
HL_7RQB_020
NA

HL_43074.18*
1/V/640:648NANA
1/V/712:719
homologous
HL_7RQB_022
NA

HL_93727.5*
1/V/744:753
homologous
HL_7RQB_023
NA

HL_39334.5*
1/V/779:785
geometric
HL_5U3G_001
NA

HL_40469.1*
1/V/826:831
homologous
HL_7RQB_025
NA

HL_15942.5*
1/V/880:897NANA
1/V/955:962
homologous
HL_7RQB_027
NA

HL_43074.18*
1/V/978:985
homologous
HL_7RQB_028
NA

HL_72451.5*
1/V/1064:1074NANA
1/V/1092:1099
homologous
HL_7RQB_030
NA
1/V/1170:1179NANA
1/V/1221:1228NANA
1/V/1281:1289
homologous
HL_7RQB_033
NA

HL_33239.17*
1/V/1324:1330
homologous
HL_7RQB_034
NA

HL_86880.5*
1/V/1362:1369NANA
1/V/1388:1399NANA
1/V/1448:1463NANA
1/V/1491:1499NANA
1/V/1612:1619
homologous
HL_7RQB_040
NA

HL_66171.3*
1/V/1629:1637NANA
1/V/1691:1696
homologous
HL_7RQB_042
NA

HL_79299.11*
1/V/1725:1735NANA
1/V/1752:1756
homologous
HL_7RQB_044
NA

HL_79272.3*
1/V/1778:1787NANA
1/V/1806:1811
geometric
HL_5U3G_001
NA

HL_40469.1*
1/V/1863:1879
geometric
HL_7A0S_056
NA

HL_93727.5*
1/V/1909:1921NANA
1/V/1949:1957
homologous
HL_7RQB_049
NA

HL_53760.4*
1/V/2027:2036
homologous
HL_7RQB_050
NA

HL_90642.5*
1/V/2143:2148
geometric
HL_2Y8W_001
NA

HL_69459.1*
1/V/2209:2215
geometric
HL_5TBW_068
NA

HL_46546.1*
1/V/2248:2256
homologous
HL_7RQB_053
NA
1/V/2264:2276
homologous
HL_7RQB_054
NA

HL_19870.5*
1/V/2303:2313
homologous
HL_7RQB_055
NA

HL_11805.3*
1/V/2324:2331
homologous
HL_7RQB_056
NA

HL_46142.8*
1/V/2355:2362
homologous
HL_7RQB_057
NA

HL_93727.5*
1/V/2374:2379
homologous
HL_7RQB_058
NA

HL_43074.18*
1/V/2404:2413
homologous
HL_7RQB_059
NA

HL_48376.4*
1/V/2471:2479
homologous
HL_7RQB_060
NA

HL_36421.5*
1/V/2528:2535
homologous
HL_7RQB_061
NA

HL_92681.5*
1/V/2551:2557
homologous
HL_7RQB_062
NA
1/V/2594:2599
homologous
HL_7RQB_063
NA

HL_43074.18*
1/V/2658:2663
homologous
HL_7RQB_064
NA

HL_43074.18*
1/V/2701:2706
homologous
HL_7RQB_065
NA

HL_31583.1*
1/V/2745:2759NANA
1/V/2819:2827
homologous
HL_7RQB_068
NA

HL_05018.6*
1/V/2856:2861
homologous
HL_7RQB_069
NA

HL_43074.18*
1/X/33:49NANA
1/X/86:90NANA

Problematic loops

No problematic loops

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/DD/28:29,
1/DD/43:45
NANA
1/G/30:32,
1/G/552:553
NANA
1/G/44:45,
1/G/396:398
NANA
1/G/47:54,
1/G/357:361
NANA
1/G/54:56,
1/G/356:357
NANA
1/G/63:66,
1/G/103:104
NANA
1/G/66:76,
1/G/93:103
NANA
1/G/128:131,
1/G/231:233
NANA
1/G/132:136,
1/G/227:230
NANA
1/G/148:154,
1/G/168:174
NANA
1/G/154:156,
1/G/165:168
NANA
1/G/156:158,
1/G/163:165
NANA
1/G/185:186D,
1/G/191C:192
NANA
1/G/242:247,
1/G/277:284
NANA
1/G/248:254,
1/G/272:276
NANA
1/G/292:293,
1/G/304:308
NANA
1/G/367:369,
1/G/392:393
NANA
1/G/371:375,
1/G/389:390
NANA
1/G/375:376,
1/G/387:389
NANA
1/G/376:378,
1/G/386:387
NANA
1/G/378:379,
1/G/384:386
NANA
1/G/409:416,
1/G/427:433
NANA
1/G/446:450,
1/G/483:488
NANA
1/G/450:455,
1/G/477:483
NANA
1/G/504:511,
1/G/540:541
NANA
1/G/514:521,
1/G/528:537
NANA
1/G/569:575,
1/G/880:881
NANA
1/G/580:584,
1/G/757:761
NANA
1/G/594:596,
1/G/644:645
NANA
1/G/597:599,
1/G/639:643
NANA
1/G/605:613,
1/G/627:633
NANA
1/G/654:658,
1/G/747:754
NANA
1/G/659:661,
1/G/745:746
NANA
1/G/661:666,
1/G/740:745
NANA
1/G/666:671,
1/G/736:740
NANA
1/G/673:681,
1/G/710:717
NANA
1/G/681:682,
1/G/708:710
NANA
1/G/683:689,
1/G/698:707
NANA
1/G/774:783,
1/G/799:805
NANA
1/G/887:895,
1/G/904:910
NANA
1/G/922:923,
1/G/1393:1395
NANA
1/G/925:927,
1/G/1390:1391
NANA
1/G/933:935,
1/G/1380:1384
NANA
1/G/953:954,
1/G/1226:1228
NANA
1/G/1048:1050,
1/G/1208:1209
NANA
1/G/1051:1056,
1/G/1204:1207
NANA
1/G/1057:1058,
1/G/1199:1203
NANA
1/G/1059:1061,
1/G/1195:1198
NANA
1/G/1124:1128,
1/G/1143:1149
NANA
1/G/1128:1133,
1/G/1141:1143
NANA
1/G/1158:1162,
1/G/1174:1181
NANA
1/G/1246:1253,
1/G/1284:1291
NANA
1/G/1255:1258,
1/G/1277:1282
NANA
1/G/1258:1260,
1/G/1274:1277
NANA
1/G/1260:1263,
1/G/1272:1274
NANA
1/G/1303:1311,
1/G/1326:1334
NANA
1/G/1399:1401,
1/G/1501:1504
NANA
1/G/1401:1404,
1/G/1497:1501
NANA
1/G/1405:1407,
1/G/1494:1496
NANA
1/G/1407:1409,
1/G/1491:1494
NANA
1/G/1410:1412,
1/G/1489:1490
NANA
1/G/1431:1435,
1/G/1466:1469
NANA
1/G/1435:1437,
1/G/1464:1466
NANA
1/G/1439:1449,
1/G/1454:1462
NANA
1/V/24:30,
1/V/510:516
Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
NA

IL_66414.5*
1/V/36:37,
1/V/442:444
Single bulged A
homologous
IL_7RQB_002
NA

IL_80007.16*
1/V/40:44,
1/V/434:439
NANA
1/V/81:87,
1/V/95:105
NANA
1/V/183:184,
1/V/212:214
Single stack bend
homologous
IL_7RQB_005
NA

IL_04038.4*
1/V/188:194,
1/V/201:208
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_006
NA

IL_04346.5*
1/V/239:245,
1/V/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
NA

IL_35110.5*
1/V/288:291,
1/V/349:353
NANA
1/V/291:295,
1/V/343:349
NANA
1/V/481:484,
1/V/496:509

geometric
IL_7RQB_014
NA

IL_60992.5*
1/V/564:566,
1/V/575:577

homologous
IL_7RQB_015
NA

IL_01312.13*
1/V/672:674,
1/V/806:808

homologous
IL_7RQB_017
NA

IL_01312.13*
1/V/674:678,
1/V/799:806
tHW-tHW cross-strand stack
geometric
IL_4WF9_021
NA

IL_17470.5*
1/V/697:698,
1/V/763:765
Single bulged A
geometric
IL_5J7L_261
NA

IL_80007.16*
1/V/701:707,
1/V/724:731
NANA
1/V/738:741,
1/V/756:758
Major groove platform with extra cWW
homologous
IL_7RQB_022
NA

IL_95485.6*
1/V/837:838,
1/V/940:942
Single stack bend
homologous
IL_7RQB_024
NA

IL_04038.4*
1/V/844:850,
1/V/928:934
NANA
1/V/857:862,
1/V/915:920
5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA

IL_89193.1*
1/V/862:869,
1/V/908:915
NANA
1/V/870:874,
1/V/904:907
NANA
1/V/875:880,
1/V/897:903
NANA
1/V/952:954,
1/V/963:965

homologous
IL_7RQB_034
NA

IL_01312.13*
1/V/993:996,
1/V/1159:1161
Isolated non-canonical cWW with bulges
geometric
IL_5J7L_009
NA

IL_55456.1*
1/V/997:1002,
1/V/1153:1158
UAA/GAN with extra cWW
geometric
IL_7RQB_107
NA

IL_49767.4*
1/V/1004:1011,
1/V/1150:1151
SSU/LSU pseudoknot
homologous
IL_7RQB_037
NA

IL_15861.6*
1/V/1011:1013,
1/V/1149:1150
Single bulged U
geometric
IL_5J7L_279
NA

IL_83039.11*
1/V/1018:1030,
1/V/1124:1144
NANA
1/V/1031:1034,
1/V/1121:1123
Isolated non-canonical cWW with bulges
homologous
IL_7RQB_041
NA

IL_55456.1*
1/V/1043:1053,
1/V/1107:1112
NANA
1/V/1087:1091,
1/V/1100:1102
Decoding loop related
geometric
IL_3C3Z_002
NA

IL_04038.4*
1/V/1166:1168,
1/V/1180:1183

geometric
IL_4M4O_001
NA

IL_01312.13*
1/V/1168:1170,
1/V/1179:1180
Single stack bend
geometric
IL_5J7L_249
NA

IL_04038.4*
1/V/1202:1207,
1/V/1239:1243
NANA
1/V/1208:1215,
1/V/1234:1238
Kink-turn
homologous
IL_7RQB_047
NA

IL_29549.9*
1/V/1219:1221,
1/V/1228:1230
Not an internal loop
geometric
IL_5VCI_005
NA

IL_04038.4*
1/V/1319:1324,
1/V/1330:1333
NANA
1/V/1351:1355,
1/V/1376:1380
UAA/GAN
homologous
IL_7RQB_052
NA

IL_53523.5*
1/V/1357:1361,
1/V/1370:1374
tSH-tHW-tHS
homologous
IL_7RQB_053
NA

IL_39521.5*
1/V/1415:1423,
1/V/1574:1587
NANA
1/V/1431:1435,
1/V/1557:1562
NANA
1/V/1437:1440,
1/V/1551:1555
tSH-tHW
homologous
IL_7RQB_057
NA

IL_08757.3*
1/V/1489:1491,
1/V/1499:1500
Single bulged A
homologous
IL_7RQB_062
NA

IL_40508.4*
1/V/1651:1656,
1/V/2004:2006

homologous
IL_7RQB_064
NA

IL_12566.2*
1/V/1663:1665,
1/V/1995:1997
NANA
1/V/1666:1674,
1/V/1990:1994
NANA
1/V/1686:1691,
1/V/1696:1702
tSH-tSH-tHH-tHS
geometric
IL_7RQB_068
NA

IL_66584.5*
1/V/1710:1725,
1/V/1735:1748
NANA
1/V/1770:1771,
1/V/1980:1982
Single bulged A
homologous
IL_7RQB_069
NA

IL_80007.16*
1/V/1776:1778,
1/V/1787:1788
Single stack bend
geometric
IL_7KGA_003
NA

IL_04038.4*
1/V/1798:1804,
1/V/1813:1821
Kink-turn related
homologous
IL_7RQB_070
NA

IL_17069.3*
1/V/1837:1840,
1/V/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
homologous
IL_7RQB_071
NA

IL_31836.1*
1/V/1841:1842,
1/V/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
homologous
IL_7RQB_072
NA

IL_13730.12*
1/V/1846:1849,
1/V/1893:1894
Minor groove platform
homologous
IL_7RQB_073
NA

IL_06437.11*
1/V/1850:1855,
1/V/1887:1892
NANA
1/V/1856:1860,
1/V/1882:1886
Triple sheared
homologous
IL_7RQB_075
NA

IL_56467.6*
1/V/1933:1934,
1/V/1964:1967
Multiple bulged bases
homologous
IL_7RQB_076
NA

IL_69632.1*
1/V/1934:1945,
1/V/1961:1964

geometric
IL_7A0S_072
NA

IL_07097.1*
1/V/2050:2052,
1/V/2617:2618
Major groove platform
homologous
IL_7RQB_078
NA

IL_80663.10*
1/V/2067:2069,
1/V/2442:2443
Single bulged U
homologous
IL_7RQB_080
NA

IL_83039.11*
1/V/2070:2071,
1/V/2438:2441
Minor groove platform
homologous
IL_7RQB_081
NA

IL_06437.11*
1/V/2081:2083,
1/V/2236:2239
Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA

IL_38958.6*
1/V/2085:2087,
1/V/2232:2234

homologous
IL_7RQB_083
NA

IL_01312.13*
1/V/2097:2103,
1/V/2187:2192
NANA
1/V/2103:2104,
1/V/2185:2187
NANA
1/V/2297:2299,
1/V/2317:2321
Isolated tHS basepair with bulges
geometric
IL_7RQB_082
NA

IL_38958.6*
1/V/2347:2353,
1/V/2364:2370
NANA
1/V/2400:2403,
1/V/2414:2416
Major groove platform with extra pair
geometric
IL_3V7E_003
NA

IL_87630.5*
1/V/2453:2454,
1/V/2498:2500
Single stack bend
homologous
IL_7RQB_091
NA

IL_04038.4*
1/V/2454:2455,
1/V/2496:2498
Major groove platform
geometric
IL_4V9F_082
NA

IL_80663.10*
1/V/2456:2461,
1/V/2489:2495
NANA
1/V/2466:2470,
1/V/2480:2484
Triple sheared
homologous
IL_7RQB_095
NA

IL_56467.6*
1/V/2507:2508,
1/V/2580:2582
Major groove platform
homologous
IL_7RQB_096
NA

IL_02060.4*
1/V/2510:2512,
1/V/2574:2578
Isolated non-canonical cWW with bulges
geometric
IL_7A0S_089
NA

IL_01312.13*
1/V/2512:2513,
1/V/2571:2574
Multiple bulged bases
homologous
IL_7RQB_098
NA

IL_13730.12*
1/V/2522:2523,
1/V/2540:2543
Minor groove platform with intercalation
homologous
IL_7RQB_099
NA

IL_95601.1*
1/V/2591:2592,
1/V/2601:2603
Single bulged A
homologous
IL_7RQB_101
NA

IL_80007.16*
1/V/2633:2640,
1/V/2774:2785
NANA
1/V/2651:2658,
1/V/2663:2669
NANA
1/V/2680:2685,
1/V/2724:2727
NANA
1/V/2687:2691,
1/V/2718:2722

homologous
IL_7RQB_105
NA

IL_08296.3*
1/V/2695:2697,
1/V/2710:2714

geometric
IL_5VSU_002
NA

IL_01312.13*
1/V/2737:2742,
1/V/2762:2767
UAA/GAN with extra cWW
homologous
IL_7RQB_107
NA

IL_49767.4*
1/V/2836:2840,
1/V/2877:2882
Other IL
geometric
IL_4WF9_084
NA

IL_56467.6*
1/V/2843:2846,
1/V/2870:2874

homologous
IL_7RQB_109
NA

IL_58764.1*
1/V/2847:2852,
1/V/2865:2869

homologous
IL_7RQB_110
NA

IL_83162.3*
1/X/16:18,
1/X/65:68
NANA
1/X/23:28,
1/X/56:60
NANA
1/X/30:31,
1/X/51:54
NANA
1/X/71:79,
1/X/97:105
NANA

Problematic loops

No problematic loops

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/G/46:47,
1/G/361:367,
1/G/393:395
NANA
1/G/586:590,
1/G/649:654,
1/G/754:755
NANA
1/G/671:673,
1/G/717:725,
1/G/732:736
NANA
1/G/826:830,
1/G/856:861,
1/G/868:874
NANA
1/G/943:947,
1/G/1234:1237,
1/G/1337:1340
NANA
1/G/955:962,
1/G/973:984,
1/G/1221:1225
NANA
1/G/990:997,
1/G/1044:1047,
1/G/1210:1215
NANA
1/G/1002:1007,
1/G/1022:1027,
1/G/1034:1038
NANA
1/G/1073:1075,
1/G/1082:1087,
1/G/1098:1102
NANA
1/G/1116:1118,
1/G/1155:1158,
1/G/1181:1184
NANA
1/G/1237:1241,
1/G/1296:1303,
1/G/1334:1337
NANA
1/V/30:31,
1/V/474:481,
1/V/509:510
NANA
1/V/56:57,
1/V/70:76,
1/V/110:114

homologous
J3_7RQB_002
NA
1/V/683:689,
1/V/773:777,
1/V/787:794
NANA
1/V/698:700,
1/V/732:736,
1/V/760:763

homologous
J3_7RQB_005
NA
1/V/1298:1303,
1/V/1625:1628,
1/V/1638:1642
NANA
1/V/1306:1309,
1/V/1605:1611,
1/V/1620:1622

homologous
J3_7RQB_008
NA
1/V/2090:2093,
1/V/2196:2205,
1/V/2219:2229
NANA
1/V/2295:2297,
1/V/2321:2323,
1/V/2332:2337

homologous
J3_7RQB_011
NA
1/V/2517:2520,
1/V/2545:2547,
1/V/2561:2567
NANA
1/X/11:16,
1/X/68:70,
1/X/106:109
NANA

Problematic loops

No problematic loops


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