5ZLU Internal, Hairpin and 3-way Junction Loop Motifs

154 Internal loops
103 Hairpin loops
21 Junction loops

Valid loops

#	loop id	location	motif
1	IL_5ZLU_001 ➜	1/DD/28:29,1/DD/43:45	NA
2	IL_5ZLU_002 ➜	1/G/30:32,1/G/552:553	NA
3	IL_5ZLU_003 ➜	1/G/44:45,1/G/396:398	NA
4	IL_5ZLU_004 ➜	1/G/47:54,1/G/357:361	NA
5	IL_5ZLU_005 ➜	1/G/54:56,1/G/356:357	NA
6	IL_5ZLU_006 ➜	1/G/63:66,1/G/103:104	NA
7	IL_5ZLU_007 ➜	1/G/66:76,1/G/93:103	NA
8	IL_5ZLU_008 ➜	1/G/128:131,1/G/231:233	NA
9	IL_5ZLU_009 ➜	1/G/132:136,1/G/227:230	NA
10	IL_5ZLU_010 ➜	1/G/148:154,1/G/168:174	NA
11	IL_5ZLU_011 ➜	1/G/154:156,1/G/165:168	NA
12	IL_5ZLU_012 ➜	1/G/156:158,1/G/163:165	NA
13	IL_5ZLU_013 ➜	1/G/185:186D,1/G/191C:192	NA
14	IL_5ZLU_014 ➜	1/G/242:247,1/G/277:284	NA
15	IL_5ZLU_015 ➜	1/G/248:254,1/G/272:276	NA
16	IL_5ZLU_016 ➜	1/G/292:293,1/G/304:308	NA
17	IL_5ZLU_017 ➜	1/G/367:369,1/G/392:393	NA
18	IL_5ZLU_018 ➜	1/G/371:375,1/G/389:390	NA
19	IL_5ZLU_019 ➜	1/G/375:376,1/G/387:389	NA
20	IL_5ZLU_020 ➜	1/G/376:378,1/G/386:387	NA
21	IL_5ZLU_021 ➜	1/G/378:379,1/G/384:386	NA
22	IL_5ZLU_022 ➜	1/G/409:416,1/G/427:433	NA
23	IL_5ZLU_023 ➜	1/G/446:450,1/G/483:488	NA
24	IL_5ZLU_024 ➜	1/G/450:455,1/G/477:483	NA
25	IL_5ZLU_025 ➜	1/G/504:511,1/G/540:541	NA
26	IL_5ZLU_026 ➜	1/G/514:521,1/G/528:537	NA
27	IL_5ZLU_027 ➜	1/G/569:575,1/G/880:881	NA
28	IL_5ZLU_028 ➜	1/G/580:584,1/G/757:761	NA
29	IL_5ZLU_029 ➜	1/G/594:596,1/G/644:645	NA
30	IL_5ZLU_030 ➜	1/G/597:599,1/G/639:643	NA
31	IL_5ZLU_031 ➜	1/G/605:613,1/G/627:633	NA
32	IL_5ZLU_032 ➜	1/G/654:658,1/G/747:754	NA
33	IL_5ZLU_033 ➜	1/G/659:661,1/G/745:746	NA
34	IL_5ZLU_034 ➜	1/G/661:666,1/G/740:745	NA
35	IL_5ZLU_035 ➜	1/G/666:671,1/G/736:740	NA
36	IL_5ZLU_036 ➜	1/G/673:681,1/G/710:717	NA
37	IL_5ZLU_037 ➜	1/G/681:682,1/G/708:710	NA
38	IL_5ZLU_038 ➜	1/G/683:689,1/G/698:707	NA
39	IL_5ZLU_039 ➜	1/G/774:783,1/G/799:805	NA
40	IL_5ZLU_040 ➜	1/G/887:895,1/G/904:910	NA
41	IL_5ZLU_041 ➜	1/G/922:923,1/G/1393:1395	NA
42	IL_5ZLU_042 ➜	1/G/925:927,1/G/1390:1391	NA
43	IL_5ZLU_043 ➜	1/G/933:935,1/G/1380:1384	NA
44	IL_5ZLU_044 ➜	1/G/953:954,1/G/1226:1228	NA
45	IL_5ZLU_045 ➜	1/G/1048:1050,1/G/1208:1209	NA
46	IL_5ZLU_046 ➜	1/G/1051:1056,1/G/1204:1207	NA
47	IL_5ZLU_047 ➜	1/G/1057:1058,1/G/1199:1203	NA
48	IL_5ZLU_048 ➜	1/G/1059:1061,1/G/1195:1198	NA
49	IL_5ZLU_049 ➜	1/G/1124:1128,1/G/1143:1149	NA
50	IL_5ZLU_050 ➜	1/G/1128:1133,1/G/1141:1143	NA
51	IL_5ZLU_051 ➜	1/G/1158:1162,1/G/1174:1181	NA
52	IL_5ZLU_052 ➜	1/G/1246:1253,1/G/1284:1291	NA
53	IL_5ZLU_053 ➜	1/G/1255:1258,1/G/1277:1282	NA
54	IL_5ZLU_054 ➜	1/G/1258:1260,1/G/1274:1277	NA
55	IL_5ZLU_055 ➜	1/G/1260:1263,1/G/1272:1274	NA
56	IL_5ZLU_056 ➜	1/G/1303:1311,1/G/1326:1334	NA
57	IL_5ZLU_057 ➜	1/G/1399:1401,1/G/1501:1504	NA
58	IL_5ZLU_058 ➜	1/G/1401:1404,1/G/1497:1501	NA
59	IL_5ZLU_059 ➜	1/G/1405:1407,1/G/1494:1496	NA
60	IL_5ZLU_060 ➜	1/G/1407:1409,1/G/1491:1494	NA
61	IL_5ZLU_061 ➜	1/G/1410:1412,1/G/1489:1490	NA
62	IL_5ZLU_062 ➜	1/G/1431:1435,1/G/1466:1469	NA
63	IL_5ZLU_063 ➜	1/G/1435:1437,1/G/1464:1466	NA
64	IL_5ZLU_064 ➜	1/G/1439:1449,1/G/1454:1462	NA
65	IL_5ZLU_065 ➜	1/V/24:30,1/V/510:516	NA
66	IL_5ZLU_066 ➜	1/V/36:37,1/V/442:444	NA
67	IL_5ZLU_067 ➜	1/V/40:44,1/V/434:439	NA
68	IL_5ZLU_068 ➜	1/V/81:87,1/V/95:105	NA
69	IL_5ZLU_069 ➜	1/V/183:184,1/V/212:214	NA
70	IL_5ZLU_070 ➜	1/V/188:194,1/V/201:208	NA
71	IL_5ZLU_071 ➜	1/V/239:245,1/V/253:258	NA
72	IL_5ZLU_072 ➜	1/V/288:291,1/V/349:353	NA
73	IL_5ZLU_073 ➜	1/V/291:295,1/V/343:349	NA
74	IL_5ZLU_074 ➜	1/V/481:484,1/V/496:509	NA
75	IL_5ZLU_075 ➜	1/V/564:566,1/V/575:577	NA
76	IL_5ZLU_076 ➜	1/V/672:674,1/V/806:808	NA
77	IL_5ZLU_077 ➜	1/V/674:678,1/V/799:806	NA
78	IL_5ZLU_078 ➜	1/V/697:698,1/V/763:765	NA
79	IL_5ZLU_079 ➜	1/V/701:707,1/V/724:731	NA
80	IL_5ZLU_080 ➜	1/V/738:741,1/V/756:758	NA
81	IL_5ZLU_081 ➜	1/V/837:838,1/V/940:942	NA
82	IL_5ZLU_082 ➜	1/V/844:850,1/V/928:934	NA
83	IL_5ZLU_083 ➜	1/V/857:862,1/V/915:920	NA
84	IL_5ZLU_084 ➜	1/V/862:869,1/V/908:915	NA
85	IL_5ZLU_085 ➜	1/V/870:874,1/V/904:907	NA
86	IL_5ZLU_086 ➜	1/V/875:880,1/V/897:903	NA
87	IL_5ZLU_087 ➜	1/V/952:954,1/V/963:965	NA
88	IL_5ZLU_088 ➜	1/V/993:996,1/V/1159:1161	NA
89	IL_5ZLU_089 ➜	1/V/997:1002,1/V/1153:1158	NA
90	IL_5ZLU_090 ➜	1/V/1004:1011,1/V/1150:1151	NA
91	IL_5ZLU_091 ➜	1/V/1011:1013,1/V/1149:1150	NA
92	IL_5ZLU_092 ➜	1/V/1018:1030,1/V/1124:1144	NA
93	IL_5ZLU_093 ➜	1/V/1031:1034,1/V/1121:1123	NA
94	IL_5ZLU_094 ➜	1/V/1043:1053,1/V/1107:1112	NA
95	IL_5ZLU_095 ➜	1/V/1087:1091,1/V/1100:1102	NA
96	IL_5ZLU_096 ➜	1/V/1166:1168,1/V/1180:1183	NA
97	IL_5ZLU_097 ➜	1/V/1168:1170,1/V/1179:1180	NA
98	IL_5ZLU_098 ➜	1/V/1202:1207,1/V/1239:1243	NA
99	IL_5ZLU_099 ➜	1/V/1208:1215,1/V/1234:1238	NA
100	IL_5ZLU_100 ➜	1/V/1219:1221,1/V/1228:1230	NA
101	IL_5ZLU_101 ➜	1/V/1319:1324,1/V/1330:1333	NA
102	IL_5ZLU_102 ➜	1/V/1351:1355,1/V/1376:1380	NA
103	IL_5ZLU_103 ➜	1/V/1357:1361,1/V/1370:1374	NA
104	IL_5ZLU_104 ➜	1/V/1415:1423,1/V/1574:1587	NA
105	IL_5ZLU_105 ➜	1/V/1431:1435,1/V/1557:1562	NA
106	IL_5ZLU_106 ➜	1/V/1437:1440,1/V/1551:1555	NA
107	IL_5ZLU_107 ➜	1/V/1489:1491,1/V/1499:1500	NA
108	IL_5ZLU_108 ➜	1/V/1651:1656,1/V/2004:2006	NA
109	IL_5ZLU_109 ➜	1/V/1663:1665,1/V/1995:1997	NA
110	IL_5ZLU_110 ➜	1/V/1666:1674,1/V/1990:1994	NA
111	IL_5ZLU_111 ➜	1/V/1686:1691,1/V/1696:1702	NA
112	IL_5ZLU_112 ➜	1/V/1710:1725,1/V/1735:1748	NA
113	IL_5ZLU_113 ➜	1/V/1770:1771,1/V/1980:1982	NA
114	IL_5ZLU_114 ➜	1/V/1776:1778,1/V/1787:1788	NA
115	IL_5ZLU_115 ➜	1/V/1798:1804,1/V/1813:1821	NA
116	IL_5ZLU_116 ➜	1/V/1837:1840,1/V/1902:1903	NA
117	IL_5ZLU_117 ➜	1/V/1841:1842,1/V/1898:1901	NA
118	IL_5ZLU_118 ➜	1/V/1846:1849,1/V/1893:1894	NA
119	IL_5ZLU_119 ➜	1/V/1850:1855,1/V/1887:1892	NA
120	IL_5ZLU_120 ➜	1/V/1856:1860,1/V/1882:1886	NA
121	IL_5ZLU_121 ➜	1/V/1933:1934,1/V/1964:1967	NA
122	IL_5ZLU_122 ➜	1/V/1934:1945,1/V/1961:1964	NA
123	IL_5ZLU_123 ➜	1/V/2050:2052,1/V/2617:2618	NA
124	IL_5ZLU_124 ➜	1/V/2067:2069,1/V/2442:2443	NA
125	IL_5ZLU_125 ➜	1/V/2070:2071,1/V/2438:2441	NA
126	IL_5ZLU_126 ➜	1/V/2081:2083,1/V/2236:2239	NA
127	IL_5ZLU_127 ➜	1/V/2085:2087,1/V/2232:2234	NA
128	IL_5ZLU_128 ➜	1/V/2097:2103,1/V/2187:2192	NA
129	IL_5ZLU_129 ➜	1/V/2103:2104,1/V/2185:2187	NA
130	IL_5ZLU_130 ➜	1/V/2297:2299,1/V/2317:2321	NA
131	IL_5ZLU_131 ➜	1/V/2347:2353,1/V/2364:2370	NA
132	IL_5ZLU_132 ➜	1/V/2400:2403,1/V/2414:2416	NA
133	IL_5ZLU_133 ➜	1/V/2453:2454,1/V/2498:2500	NA
134	IL_5ZLU_134 ➜	1/V/2454:2455,1/V/2496:2498	NA
135	IL_5ZLU_135 ➜	1/V/2456:2461,1/V/2489:2495	NA
136	IL_5ZLU_136 ➜	1/V/2466:2470,1/V/2480:2484	NA
137	IL_5ZLU_137 ➜	1/V/2507:2508,1/V/2580:2582	NA
138	IL_5ZLU_138 ➜	1/V/2510:2512,1/V/2574:2578	NA
139	IL_5ZLU_139 ➜	1/V/2512:2513,1/V/2571:2574	NA
140	IL_5ZLU_140 ➜	1/V/2522:2523,1/V/2540:2543	NA
141	IL_5ZLU_141 ➜	1/V/2591:2592,1/V/2601:2603	NA
142	IL_5ZLU_142 ➜	1/V/2633:2640,1/V/2774:2785	NA
143	IL_5ZLU_143 ➜	1/V/2651:2658,1/V/2663:2669	NA
144	IL_5ZLU_144 ➜	1/V/2680:2685,1/V/2724:2727	NA
145	IL_5ZLU_145 ➜	1/V/2687:2691,1/V/2718:2722	NA
146	IL_5ZLU_146 ➜	1/V/2695:2697,1/V/2710:2714	NA
147	IL_5ZLU_147 ➜	1/V/2737:2742,1/V/2762:2767	NA
148	IL_5ZLU_148 ➜	1/V/2836:2840,1/V/2877:2882	NA
149	IL_5ZLU_149 ➜	1/V/2843:2846,1/V/2870:2874	NA
150	IL_5ZLU_150 ➜	1/V/2847:2852,1/V/2865:2869	NA
151	IL_5ZLU_151 ➜	1/X/16:18,1/X/65:68	NA
152	IL_5ZLU_152 ➜	1/X/23:28,1/X/56:60	NA
153	IL_5ZLU_153 ➜	1/X/30:31,1/X/51:54	NA
154	IL_5ZLU_154 ➜	1/X/71:79,1/X/97:105	NA

Problematic loops

No problematic loops

Valid loops

#	loop id	location	motif
1	HL_5ZLU_001 ➜	1/DD/13:23	NA
2	HL_5ZLU_002 ➜	1/DD/32:40	NA
3	HL_5ZLU_003 ➜	1/DD/54:62	NA
4	HL_5ZLU_004 ➜	1/G/11:23	NA
5	HL_5ZLU_005 ➜	1/G/79:90	NA
6	HL_5ZLU_006 ➜	1/G/158:163	NA
7	HL_5ZLU_007 ➜	1/G/186E:191B	NA
8	HL_5ZLU_008 ➜	1/G/201:216	NA
9	HL_5ZLU_009 ➜	1/G/259:267	NA
10	HL_5ZLU_010 ➜	1/G/296:301	NA
11	HL_5ZLU_011 ➜	1/G/320:333	NA
12	HL_5ZLU_012 ➜	1/G/342:347	NA
13	HL_5ZLU_013 ➜	1/G/379:384	NA
14	HL_5ZLU_014 ➜	1/G/419:424	NA
15	HL_5ZLU_015 ➜	1/G/458:474	NA
16	HL_5ZLU_016 ➜	1/G/522:527	NA
17	HL_5ZLU_017 ➜	1/G/617:623	NA
18	HL_5ZLU_018 ➜	1/G/689:698	NA
19	HL_5ZLU_019 ➜	1/G/726:731	NA
20	HL_5ZLU_020 ➜	1/G/786:796	NA
21	HL_5ZLU_021 ➜	1/G/836:850	NA
22	HL_5ZLU_022 ➜	1/G/862:867	NA
23	HL_5ZLU_023 ➜	1/G/897:902	NA
24	HL_5ZLU_024 ➜	1/G/963:972	NA
25	HL_5ZLU_025 ➜	1/G/1007:1022	NA
26	HL_5ZLU_026 ➜	1/G/1027:1034	NA
27	HL_5ZLU_027 ➜	1/G/1076:1081	NA
28	HL_5ZLU_028 ➜	1/G/1089:1096	NA
29	HL_5ZLU_029 ➜	1/G/1134:1140	NA
30	HL_5ZLU_030 ➜	1/G/1162:1174	NA
31	HL_5ZLU_031 ➜	1/G/1265:1270	NA
32	HL_5ZLU_032 ➜	1/G/1314:1323	NA
33	HL_5ZLU_033 ➜	1/G/1356:1366	NA
34	HL_5ZLU_034 ➜	1/G/1449:1454	NA
35	HL_5ZLU_035 ➜	1/G/1515:1520	NA
36	HL_5ZLU_036 ➜	1/V/59:68	NA
37	HL_5ZLU_037 ➜	1/V/87:95	NA
38	HL_5ZLU_038 ➜	1/V/123:128	NA
39	HL_5ZLU_039 ➜	1/V/136:143	NA
40	HL_5ZLU_040 ➜	1/V/153:173	NA
41	HL_5ZLU_041 ➜	1/V/194:201	NA
42	HL_5ZLU_042 ➜	1/V/224:231	NA
43	HL_5ZLU_043 ➜	1/V/246:252	NA
44	HL_5ZLU_044 ➜	1/V/270I:270Q	NA
45	HL_5ZLU_045 ➜	1/V/304:313	NA
46	HL_5ZLU_046 ➜	1/V/319:323	NA
47	HL_5ZLU_047 ➜	1/V/327:335	NA
48	HL_5ZLU_048 ➜	1/V/382:392	NA
49	HL_5ZLU_049 ➜	1/V/410:417	NA
50	HL_5ZLU_050 ➜	1/V/462:467	NA
51	HL_5ZLU_051 ➜	1/V/487:493	NA
52	HL_5ZLU_052 ➜	1/V/544:549	NA
53	HL_5ZLU_053 ➜	1/V/566:575	NA
54	HL_5ZLU_054 ➜	1/V/629:635	NA
55	HL_5ZLU_055 ➜	1/V/640:648	NA
56	HL_5ZLU_056 ➜	1/V/712:719	NA
57	HL_5ZLU_057 ➜	1/V/744:753	NA
58	HL_5ZLU_058 ➜	1/V/779:785	NA
59	HL_5ZLU_059 ➜	1/V/826:831	NA
60	HL_5ZLU_060 ➜	1/V/880:897	NA
61	HL_5ZLU_061 ➜	1/V/955:962	NA
62	HL_5ZLU_062 ➜	1/V/978:985	NA
63	HL_5ZLU_063 ➜	1/V/1064:1074	NA
64	HL_5ZLU_064 ➜	1/V/1092:1099	NA
65	HL_5ZLU_065 ➜	1/V/1170:1179	NA
66	HL_5ZLU_066 ➜	1/V/1221:1228	NA
67	HL_5ZLU_067 ➜	1/V/1281:1289	NA
68	HL_5ZLU_068 ➜	1/V/1324:1330	NA
69	HL_5ZLU_069 ➜	1/V/1362:1369	NA
70	HL_5ZLU_070 ➜	1/V/1388:1399	NA
71	HL_5ZLU_071 ➜	1/V/1448:1463	NA
72	HL_5ZLU_072 ➜	1/V/1491:1499	NA
73	HL_5ZLU_073 ➜	1/V/1612:1619	NA
74	HL_5ZLU_074 ➜	1/V/1629:1637	NA
75	HL_5ZLU_075 ➜	1/V/1691:1696	NA
76	HL_5ZLU_076 ➜	1/V/1725:1735	NA
77	HL_5ZLU_077 ➜	1/V/1752:1756	NA
78	HL_5ZLU_078 ➜	1/V/1778:1787	NA
79	HL_5ZLU_079 ➜	1/V/1806:1811	NA
80	HL_5ZLU_080 ➜	1/V/1863:1879	NA
81	HL_5ZLU_081 ➜	1/V/1909:1921	NA
82	HL_5ZLU_082 ➜	1/V/1949:1957	NA
83	HL_5ZLU_083 ➜	1/V/2027:2036	NA
84	HL_5ZLU_084 ➜	1/V/2143:2148	NA
85	HL_5ZLU_085 ➜	1/V/2209:2215	NA
86	HL_5ZLU_086 ➜	1/V/2248:2256	NA
87	HL_5ZLU_087 ➜	1/V/2264:2276	NA
88	HL_5ZLU_088 ➜	1/V/2303:2313	NA
89	HL_5ZLU_089 ➜	1/V/2324:2331	NA
90	HL_5ZLU_090 ➜	1/V/2355:2362	NA
91	HL_5ZLU_091 ➜	1/V/2374:2379	NA
92	HL_5ZLU_092 ➜	1/V/2404:2413	NA
93	HL_5ZLU_093 ➜	1/V/2471:2479	NA
94	HL_5ZLU_094 ➜	1/V/2528:2535	NA
95	HL_5ZLU_095 ➜	1/V/2551:2557	NA
96	HL_5ZLU_096 ➜	1/V/2594:2599	NA
97	HL_5ZLU_097 ➜	1/V/2658:2663	NA
98	HL_5ZLU_098 ➜	1/V/2701:2706	NA
99	HL_5ZLU_099 ➜	1/V/2745:2759	NA
100	HL_5ZLU_100 ➜	1/V/2819:2827	NA
101	HL_5ZLU_101 ➜	1/V/2856:2861	NA
102	HL_5ZLU_102 ➜	1/X/33:49	NA
103	HL_5ZLU_103 ➜	1/X/86:90	NA

Problematic loops

No problematic loops

Valid loops

#	loop id	location	motif
1	J3_5ZLU_001 ➜	1/G/46:47,1/G/361:367,1/G/393:395	NA
2	J3_5ZLU_002 ➜	1/G/586:590,1/G/649:654,1/G/754:755	NA
3	J3_5ZLU_003 ➜	1/G/671:673,1/G/717:725,1/G/732:736	NA
4	J3_5ZLU_004 ➜	1/G/826:830,1/G/856:861,1/G/868:874	NA
5	J3_5ZLU_005 ➜	1/G/943:947,1/G/1234:1237,1/G/1337:1340	NA
6	J3_5ZLU_006 ➜	1/G/955:962,1/G/973:984,1/G/1221:1225	NA
7	J3_5ZLU_007 ➜	1/G/990:997,1/G/1044:1047,1/G/1210:1215	NA
8	J3_5ZLU_008 ➜	1/G/1002:1007,1/G/1022:1027,1/G/1034:1038	NA
9	J3_5ZLU_009 ➜	1/G/1073:1075,1/G/1082:1087,1/G/1098:1102	NA
10	J3_5ZLU_010 ➜	1/G/1116:1118,1/G/1155:1158,1/G/1181:1184	NA
11	J3_5ZLU_011 ➜	1/G/1237:1241,1/G/1296:1303,1/G/1334:1337	NA
12	J3_5ZLU_012 ➜	1/V/30:31,1/V/474:481,1/V/509:510	NA
13	J3_5ZLU_013 ➜	1/V/56:57,1/V/70:76,1/V/110:114	NA
14	J3_5ZLU_014 ➜	1/V/683:689,1/V/773:777,1/V/787:794	NA
15	J3_5ZLU_015 ➜	1/V/698:700,1/V/732:736,1/V/760:763	NA
16	J3_5ZLU_016 ➜	1/V/1298:1303,1/V/1625:1628,1/V/1638:1642	NA
17	J3_5ZLU_017 ➜	1/V/1306:1309,1/V/1605:1611,1/V/1620:1622	NA
18	J3_5ZLU_018 ➜	1/V/2090:2093,1/V/2196:2205,1/V/2219:2229	NA
19	J3_5ZLU_019 ➜	1/V/2295:2297,1/V/2321:2323,1/V/2332:2337	NA
20	J3_5ZLU_020 ➜	1/V/2517:2520,1/V/2545:2547,1/V/2561:2567	NA
21	J3_5ZLU_021 ➜	1/X/11:16,1/X/68:70,1/X/106:109	NA

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers