5ZLU Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/DD/13:23 | NA | NA | ||
1/DD/32:40 | NA | NA | ||
1/DD/54:62 | NA | NA | ||
1/G/11:23 | NA | NA | ||
1/G/79:90 | NA | NA | ||
1/G/158:163 | NA | NA | ||
1/G/186E:191B | NA | NA | ||
1/G/201:216 | NA | NA | ||
1/G/259:267 | NA | NA | ||
1/G/296:301 | NA | NA | ||
1/G/320:333 | NA | NA | ||
1/G/342:347 | NA | NA | ||
1/G/379:384 | NA | NA | ||
1/G/419:424 | NA | NA | ||
1/G/458:474 | NA | NA | ||
1/G/522:527 | NA | NA | ||
1/G/617:623 | NA | NA | ||
1/G/689:698 | NA | NA | ||
1/G/726:731 | NA | NA | ||
1/G/786:796 | NA | NA | ||
1/G/836:850 | NA | NA | ||
1/G/862:867 | NA | NA | ||
1/G/897:902 | NA | NA | ||
1/G/963:972 | NA | NA | ||
1/G/1007:1022 | NA | NA | ||
1/G/1027:1034 | NA | NA | ||
1/G/1076:1081 | NA | NA | ||
1/G/1089:1096 | NA | NA | ||
1/G/1134:1140 | NA | NA | ||
1/G/1162:1174 | NA | NA | ||
1/G/1265:1270 | NA | NA | ||
1/G/1314:1323 | NA | NA | ||
1/G/1356:1366 | NA | NA | ||
1/G/1449:1454 | NA | NA | ||
1/G/1515:1520 | NA | NA | ||
1/V/59:68 | homologous HL_7RQB_001 | NA HL_29414.1* | ||
1/V/87:95 | geometric HL_7RQB_002 | NA HL_17926.5* | ||
1/V/123:128 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
1/V/136:143 | NA | NA | ||
1/V/153:173 | homologous HL_7RQB_005 | NA | ||
1/V/194:201 | geometric HL_5TBW_001 | NA HL_23481.5* | ||
1/V/224:231 | geometric HL_6CF2_001 | NA HL_80105.3* | ||
1/V/246:252 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
1/V/270I:270Q | geometric HL_2ZZM_002 | NA HL_18218.2* | ||
1/V/304:313 | NA | NA | ||
1/V/319:323 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
1/V/327:335 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
1/V/382:392 | homologous HL_7RQB_013 | NA HL_91503.3* | ||
1/V/410:417 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
1/V/462:467 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
1/V/487:493 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
1/V/544:549 | homologous HL_7RQB_017 | NA | ||
1/V/566:575 | geometric HL_7A0S_018 | NA HL_33239.17* | ||
1/V/629:635 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
1/V/640:648 | NA | NA | ||
1/V/712:719 | homologous HL_7RQB_022 | NA HL_93727.5* | ||
1/V/744:753 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
1/V/779:785 | geometric HL_5U3G_001 | NA HL_40469.1* | ||
1/V/826:831 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
1/V/880:897 | NA | NA | ||
1/V/955:962 | homologous HL_7RQB_027 | NA HL_43074.18* | ||
1/V/978:985 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
1/V/1064:1074 | NA | NA | ||
1/V/1092:1099 | homologous HL_7RQB_030 | NA | ||
1/V/1170:1179 | NA | NA | ||
1/V/1221:1228 | NA | NA | ||
1/V/1281:1289 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
1/V/1324:1330 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
1/V/1362:1369 | NA | NA | ||
1/V/1388:1399 | NA | NA | ||
1/V/1448:1463 | NA | NA | ||
1/V/1491:1499 | NA | NA | ||
1/V/1612:1619 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
1/V/1629:1637 | NA | NA | ||
1/V/1691:1696 | homologous HL_7RQB_042 | NA HL_79299.11* | ||
1/V/1725:1735 | NA | NA | ||
1/V/1752:1756 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
1/V/1778:1787 | NA | NA | ||
1/V/1806:1811 | geometric HL_5U3G_001 | NA HL_40469.1* | ||
1/V/1863:1879 | geometric HL_7A0S_056 | NA HL_93727.5* | ||
1/V/1909:1921 | NA | NA | ||
1/V/1949:1957 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
1/V/2027:2036 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
1/V/2143:2148 | geometric HL_2Y8W_001 | NA HL_69459.1* | ||
1/V/2209:2215 | geometric HL_5TBW_068 | NA HL_46546.1* | ||
1/V/2248:2256 | homologous HL_7RQB_053 | NA | ||
1/V/2264:2276 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
1/V/2303:2313 | homologous HL_7RQB_055 | NA HL_11805.3* | ||
1/V/2324:2331 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
1/V/2355:2362 | homologous HL_7RQB_057 | NA HL_93727.5* | ||
1/V/2374:2379 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
1/V/2404:2413 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
1/V/2471:2479 | homologous HL_7RQB_060 | NA HL_36421.5* | ||
1/V/2528:2535 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
1/V/2551:2557 | homologous HL_7RQB_062 | NA | ||
1/V/2594:2599 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
1/V/2658:2663 | homologous HL_7RQB_064 | NA HL_43074.18* | ||
1/V/2701:2706 | homologous HL_7RQB_065 | NA HL_31583.1* | ||
1/V/2745:2759 | NA | NA | ||
1/V/2819:2827 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
1/V/2856:2861 | homologous HL_7RQB_069 | NA HL_43074.18* | ||
1/X/33:49 | NA | NA | ||
1/X/86:90 | NA | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/DD/28:29, 1/DD/43:45 | NA | NA | ||
1/G/30:32, 1/G/552:553 | NA | NA | ||
1/G/44:45, 1/G/396:398 | NA | NA | ||
1/G/47:54, 1/G/357:361 | NA | NA | ||
1/G/54:56, 1/G/356:357 | NA | NA | ||
1/G/63:66, 1/G/103:104 | NA | NA | ||
1/G/66:76, 1/G/93:103 | NA | NA | ||
1/G/128:131, 1/G/231:233 | NA | NA | ||
1/G/132:136, 1/G/227:230 | NA | NA | ||
1/G/148:154, 1/G/168:174 | NA | NA | ||
1/G/154:156, 1/G/165:168 | NA | NA | ||
1/G/156:158, 1/G/163:165 | NA | NA | ||
1/G/185:186D, 1/G/191C:192 | NA | NA | ||
1/G/242:247, 1/G/277:284 | NA | NA | ||
1/G/248:254, 1/G/272:276 | NA | NA | ||
1/G/292:293, 1/G/304:308 | NA | NA | ||
1/G/367:369, 1/G/392:393 | NA | NA | ||
1/G/371:375, 1/G/389:390 | NA | NA | ||
1/G/375:376, 1/G/387:389 | NA | NA | ||
1/G/376:378, 1/G/386:387 | NA | NA | ||
1/G/378:379, 1/G/384:386 | NA | NA | ||
1/G/409:416, 1/G/427:433 | NA | NA | ||
1/G/446:450, 1/G/483:488 | NA | NA | ||
1/G/450:455, 1/G/477:483 | NA | NA | ||
1/G/504:511, 1/G/540:541 | NA | NA | ||
1/G/514:521, 1/G/528:537 | NA | NA | ||
1/G/569:575, 1/G/880:881 | NA | NA | ||
1/G/580:584, 1/G/757:761 | NA | NA | ||
1/G/594:596, 1/G/644:645 | NA | NA | ||
1/G/597:599, 1/G/639:643 | NA | NA | ||
1/G/605:613, 1/G/627:633 | NA | NA | ||
1/G/654:658, 1/G/747:754 | NA | NA | ||
1/G/659:661, 1/G/745:746 | NA | NA | ||
1/G/661:666, 1/G/740:745 | NA | NA | ||
1/G/666:671, 1/G/736:740 | NA | NA | ||
1/G/673:681, 1/G/710:717 | NA | NA | ||
1/G/681:682, 1/G/708:710 | NA | NA | ||
1/G/683:689, 1/G/698:707 | NA | NA | ||
1/G/774:783, 1/G/799:805 | NA | NA | ||
1/G/887:895, 1/G/904:910 | NA | NA | ||
1/G/922:923, 1/G/1393:1395 | NA | NA | ||
1/G/925:927, 1/G/1390:1391 | NA | NA | ||
1/G/933:935, 1/G/1380:1384 | NA | NA | ||
1/G/953:954, 1/G/1226:1228 | NA | NA | ||
1/G/1048:1050, 1/G/1208:1209 | NA | NA | ||
1/G/1051:1056, 1/G/1204:1207 | NA | NA | ||
1/G/1057:1058, 1/G/1199:1203 | NA | NA | ||
1/G/1059:1061, 1/G/1195:1198 | NA | NA | ||
1/G/1124:1128, 1/G/1143:1149 | NA | NA | ||
1/G/1128:1133, 1/G/1141:1143 | NA | NA | ||
1/G/1158:1162, 1/G/1174:1181 | NA | NA | ||
1/G/1246:1253, 1/G/1284:1291 | NA | NA | ||
1/G/1255:1258, 1/G/1277:1282 | NA | NA | ||
1/G/1258:1260, 1/G/1274:1277 | NA | NA | ||
1/G/1260:1263, 1/G/1272:1274 | NA | NA | ||
1/G/1303:1311, 1/G/1326:1334 | NA | NA | ||
1/G/1399:1401, 1/G/1501:1504 | NA | NA | ||
1/G/1401:1404, 1/G/1497:1501 | NA | NA | ||
1/G/1405:1407, 1/G/1494:1496 | NA | NA | ||
1/G/1407:1409, 1/G/1491:1494 | NA | NA | ||
1/G/1410:1412, 1/G/1489:1490 | NA | NA | ||
1/G/1431:1435, 1/G/1466:1469 | NA | NA | ||
1/G/1435:1437, 1/G/1464:1466 | NA | NA | ||
1/G/1439:1449, 1/G/1454:1462 | NA | NA | ||
1/V/24:30, 1/V/510:516 | Triple sheared with non-canonical cWW homologous IL_7RQB_001 | NA IL_66414.5* | ||
1/V/36:37, 1/V/442:444 | Single bulged A homologous IL_7RQB_002 | NA IL_80007.16* | ||
1/V/40:44, 1/V/434:439 | NA | NA | ||
1/V/81:87, 1/V/95:105 | NA | NA | ||
1/V/183:184, 1/V/212:214 | Single stack bend homologous IL_7RQB_005 | NA IL_04038.4* | ||
1/V/188:194, 1/V/201:208 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_006 | NA IL_04346.5* | ||
1/V/239:245, 1/V/253:258 | 7x6 Sarcin-Ricin; G-bulge homologous IL_7RQB_007 | NA IL_35110.5* | ||
1/V/288:291, 1/V/349:353 | NA | NA | ||
1/V/291:295, 1/V/343:349 | NA | NA | ||
1/V/481:484, 1/V/496:509 | geometric IL_7RQB_014 | NA IL_60992.5* | ||
1/V/564:566, 1/V/575:577 | homologous IL_7RQB_015 | NA IL_01312.13* | ||
1/V/672:674, 1/V/806:808 | homologous IL_7RQB_017 | NA IL_01312.13* | ||
1/V/674:678, 1/V/799:806 | tHW-tHW cross-strand stack geometric IL_4WF9_021 | NA IL_17470.5* | ||
1/V/697:698, 1/V/763:765 | Single bulged A geometric IL_5J7L_261 | NA IL_80007.16* | ||
1/V/701:707, 1/V/724:731 | NA | NA | ||
1/V/738:741, 1/V/756:758 | Major groove platform with extra cWW homologous IL_7RQB_022 | NA IL_95485.6* | ||
1/V/837:838, 1/V/940:942 | Single stack bend homologous IL_7RQB_024 | NA IL_04038.4* | ||
1/V/844:850, 1/V/928:934 | NA | NA | ||
1/V/857:862, 1/V/915:920 | 5x5 Sarcin-Ricin with intercalated A; G-bulge geometric IL_7A0S_027 | NA IL_89193.1* | ||
1/V/862:869, 1/V/908:915 | NA | NA | ||
1/V/870:874, 1/V/904:907 | NA | NA | ||
1/V/875:880, 1/V/897:903 | NA | NA | ||
1/V/952:954, 1/V/963:965 | homologous IL_7RQB_034 | NA IL_01312.13* | ||
1/V/993:996, 1/V/1159:1161 | Isolated non-canonical cWW with bulges geometric IL_5J7L_009 | NA IL_55456.1* | ||
1/V/997:1002, 1/V/1153:1158 | UAA/GAN with extra cWW geometric IL_7RQB_107 | NA IL_49767.4* | ||
1/V/1004:1011, 1/V/1150:1151 | SSU/LSU pseudoknot homologous IL_7RQB_037 | NA IL_15861.6* | ||
1/V/1011:1013, 1/V/1149:1150 | Single bulged U geometric IL_5J7L_279 | NA IL_83039.11* | ||
1/V/1018:1030, 1/V/1124:1144 | NA | NA | ||
1/V/1031:1034, 1/V/1121:1123 | Isolated non-canonical cWW with bulges homologous IL_7RQB_041 | NA IL_55456.1* | ||
1/V/1043:1053, 1/V/1107:1112 | NA | NA | ||
1/V/1087:1091, 1/V/1100:1102 | Decoding loop related geometric IL_3C3Z_002 | NA IL_04038.4* | ||
1/V/1166:1168, 1/V/1180:1183 | geometric IL_4M4O_001 | NA IL_01312.13* | ||
1/V/1168:1170, 1/V/1179:1180 | Single stack bend geometric IL_5J7L_249 | NA IL_04038.4* | ||
1/V/1202:1207, 1/V/1239:1243 | NA | NA | ||
1/V/1208:1215, 1/V/1234:1238 | Kink-turn homologous IL_7RQB_047 | NA IL_29549.9* | ||
1/V/1219:1221, 1/V/1228:1230 | Not an internal loop geometric IL_5VCI_005 | NA IL_04038.4* | ||
1/V/1319:1324, 1/V/1330:1333 | NA | NA | ||
1/V/1351:1355, 1/V/1376:1380 | UAA/GAN homologous IL_7RQB_052 | NA IL_53523.5* | ||
1/V/1357:1361, 1/V/1370:1374 | tSH-tHW-tHS homologous IL_7RQB_053 | NA IL_39521.5* | ||
1/V/1415:1423, 1/V/1574:1587 | NA | NA | ||
1/V/1431:1435, 1/V/1557:1562 | NA | NA | ||
1/V/1437:1440, 1/V/1551:1555 | tSH-tHW homologous IL_7RQB_057 | NA IL_08757.3* | ||
1/V/1489:1491, 1/V/1499:1500 | Single bulged A homologous IL_7RQB_062 | NA IL_40508.4* | ||
1/V/1651:1656, 1/V/2004:2006 | homologous IL_7RQB_064 | NA IL_12566.2* | ||
1/V/1663:1665, 1/V/1995:1997 | NA | NA | ||
1/V/1666:1674, 1/V/1990:1994 | NA | NA | ||
1/V/1686:1691, 1/V/1696:1702 | tSH-tSH-tHH-tHS geometric IL_7RQB_068 | NA IL_66584.5* | ||
1/V/1710:1725, 1/V/1735:1748 | NA | NA | ||
1/V/1770:1771, 1/V/1980:1982 | Single bulged A homologous IL_7RQB_069 | NA IL_80007.16* | ||
1/V/1776:1778, 1/V/1787:1788 | Single stack bend geometric IL_7KGA_003 | NA IL_04038.4* | ||
1/V/1798:1804, 1/V/1813:1821 | Kink-turn related homologous IL_7RQB_070 | NA IL_17069.3* | ||
1/V/1837:1840, 1/V/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_071 | NA IL_31836.1* | ||
1/V/1841:1842, 1/V/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_072 | NA IL_13730.12* | ||
1/V/1846:1849, 1/V/1893:1894 | Minor groove platform homologous IL_7RQB_073 | NA IL_06437.11* | ||
1/V/1850:1855, 1/V/1887:1892 | NA | NA | ||
1/V/1856:1860, 1/V/1882:1886 | Triple sheared homologous IL_7RQB_075 | NA IL_56467.6* | ||
1/V/1933:1934, 1/V/1964:1967 | Multiple bulged bases homologous IL_7RQB_076 | NA IL_69632.1* | ||
1/V/1934:1945, 1/V/1961:1964 | geometric IL_7A0S_072 | NA IL_07097.1* | ||
1/V/2050:2052, 1/V/2617:2618 | Major groove platform homologous IL_7RQB_078 | NA IL_80663.10* | ||
1/V/2067:2069, 1/V/2442:2443 | Single bulged U homologous IL_7RQB_080 | NA IL_83039.11* | ||
1/V/2070:2071, 1/V/2438:2441 | Minor groove platform homologous IL_7RQB_081 | NA IL_06437.11* | ||
1/V/2081:2083, 1/V/2236:2239 | Isolated tHS basepair with bulges homologous IL_7RQB_082 | NA IL_38958.6* | ||
1/V/2085:2087, 1/V/2232:2234 | homologous IL_7RQB_083 | NA IL_01312.13* | ||
1/V/2097:2103, 1/V/2187:2192 | NA | NA | ||
1/V/2103:2104, 1/V/2185:2187 | NA | NA | ||
1/V/2297:2299, 1/V/2317:2321 | Isolated tHS basepair with bulges geometric IL_7RQB_082 | NA IL_38958.6* | ||
1/V/2347:2353, 1/V/2364:2370 | NA | NA | ||
1/V/2400:2403, 1/V/2414:2416 | Major groove platform with extra pair geometric IL_3V7E_003 | NA IL_87630.5* | ||
1/V/2453:2454, 1/V/2498:2500 | Single stack bend homologous IL_7RQB_091 | NA IL_04038.4* | ||
1/V/2454:2455, 1/V/2496:2498 | Major groove platform geometric IL_4V9F_082 | NA IL_80663.10* | ||
1/V/2456:2461, 1/V/2489:2495 | NA | NA | ||
1/V/2466:2470, 1/V/2480:2484 | Triple sheared homologous IL_7RQB_095 | NA IL_56467.6* | ||
1/V/2507:2508, 1/V/2580:2582 | Major groove platform homologous IL_7RQB_096 | NA IL_02060.4* | ||
1/V/2510:2512, 1/V/2574:2578 | Isolated non-canonical cWW with bulges geometric IL_7A0S_089 | NA IL_01312.13* | ||
1/V/2512:2513, 1/V/2571:2574 | Multiple bulged bases homologous IL_7RQB_098 | NA IL_13730.12* | ||
1/V/2522:2523, 1/V/2540:2543 | Minor groove platform with intercalation homologous IL_7RQB_099 | NA IL_95601.1* | ||
1/V/2591:2592, 1/V/2601:2603 | Single bulged A homologous IL_7RQB_101 | NA IL_80007.16* | ||
1/V/2633:2640, 1/V/2774:2785 | NA | NA | ||
1/V/2651:2658, 1/V/2663:2669 | NA | NA | ||
1/V/2680:2685, 1/V/2724:2727 | NA | NA | ||
1/V/2687:2691, 1/V/2718:2722 | homologous IL_7RQB_105 | NA IL_08296.3* | ||
1/V/2695:2697, 1/V/2710:2714 | geometric IL_5VSU_002 | NA IL_01312.13* | ||
1/V/2737:2742, 1/V/2762:2767 | UAA/GAN with extra cWW homologous IL_7RQB_107 | NA IL_49767.4* | ||
1/V/2836:2840, 1/V/2877:2882 | Other IL geometric IL_4WF9_084 | NA IL_56467.6* | ||
1/V/2843:2846, 1/V/2870:2874 | homologous IL_7RQB_109 | NA IL_58764.1* | ||
1/V/2847:2852, 1/V/2865:2869 | homologous IL_7RQB_110 | NA IL_83162.3* | ||
1/X/16:18, 1/X/65:68 | NA | NA | ||
1/X/23:28, 1/X/56:60 | NA | NA | ||
1/X/30:31, 1/X/51:54 | NA | NA | ||
1/X/71:79, 1/X/97:105 | NA | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/G/46:47, 1/G/361:367, 1/G/393:395 | NA | NA | ||
1/G/586:590, 1/G/649:654, 1/G/754:755 | NA | NA | ||
1/G/671:673, 1/G/717:725, 1/G/732:736 | NA | NA | ||
1/G/826:830, 1/G/856:861, 1/G/868:874 | NA | NA | ||
1/G/943:947, 1/G/1234:1237, 1/G/1337:1340 | NA | NA | ||
1/G/955:962, 1/G/973:984, 1/G/1221:1225 | NA | NA | ||
1/G/990:997, 1/G/1044:1047, 1/G/1210:1215 | NA | NA | ||
1/G/1002:1007, 1/G/1022:1027, 1/G/1034:1038 | NA | NA | ||
1/G/1073:1075, 1/G/1082:1087, 1/G/1098:1102 | NA | NA | ||
1/G/1116:1118, 1/G/1155:1158, 1/G/1181:1184 | NA | NA | ||
1/G/1237:1241, 1/G/1296:1303, 1/G/1334:1337 | NA | NA | ||
1/V/30:31, 1/V/474:481, 1/V/509:510 | NA | NA | ||
1/V/56:57, 1/V/70:76, 1/V/110:114 | homologous J3_7RQB_002 | NA | ||
1/V/683:689, 1/V/773:777, 1/V/787:794 | NA | NA | ||
1/V/698:700, 1/V/732:736, 1/V/760:763 | homologous J3_7RQB_005 | NA | ||
1/V/1298:1303, 1/V/1625:1628, 1/V/1638:1642 | NA | NA | ||
1/V/1306:1309, 1/V/1605:1611, 1/V/1620:1622 | homologous J3_7RQB_008 | NA | ||
1/V/2090:2093, 1/V/2196:2205, 1/V/2219:2229 | NA | NA | ||
1/V/2295:2297, 1/V/2321:2323, 1/V/2332:2337 | homologous J3_7RQB_011 | NA | ||
1/V/2517:2520, 1/V/2545:2547, 1/V/2561:2567 | NA | NA | ||
1/X/11:16, 1/X/68:70, 1/X/106:109 | NA | NA |
Problematic loops
No problematic loops
Coloring options: