5ND8 | Motifs

101 Hairpin loops
178 Internal loops
25 Junction loops

Valid loops

#	loop id	location	annotation	motif
1	HL_5ND8_001 ➜	1/A/59:68	NA	NA
2	HL_5ND8_002 ➜	1/A/87:95	NA	NA
3	HL_5ND8_003 ➜	1/A/122:127	NA	NA
4	HL_5ND8_004 ➜	1/A/136:143	NA	NA
5	HL_5ND8_005 ➜	1/A/159:169	NA	NA
6	HL_5ND8_006 ➜	1/A/197:204	NA	NA
7	HL_5ND8_007 ➜	1/A/228:233	NA	NA
8	HL_5ND8_008 ➜	1/A/249:255	NA	NA
9	HL_5ND8_009 ➜	1/A/283:288	NA	NA
10	HL_5ND8_010 ➜	1/A/348:355	NA	NA
11	HL_5ND8_011 ➜	1/A/362:366	NA	NA
12	HL_5ND8_012 ➜	1/A/370:378	NA	NA
13	HL_5ND8_013 ➜	1/A/427:439	NA	NA
14	HL_5ND8_014 ➜	1/A/456:463	NA	NA
15	HL_5ND8_015 ➜	1/A/508:513	NA	NA
16	HL_5ND8_016 ➜	1/A/533:538	NA	NA
17	HL_5ND8_017 ➜	1/A/587:594	NA	NA
18	HL_5ND8_018 ➜	1/A/609:618	NA	NA
19	HL_5ND8_019 ➜	1/A/655:661	NA	NA
20	HL_5ND8_020 ➜	1/A/674:679	NA	NA
21	HL_5ND8_021 ➜	1/A/686:692	NA	NA
22	HL_5ND8_022 ➜	1/A/757:764	NA	NA
23	HL_5ND8_023 ➜	1/A/789:798	NA	NA
24	HL_5ND8_024 ➜	1/A/824:830	NA	NA
25	HL_5ND8_025 ➜	1/A/871:876	NA	NA
26	HL_5ND8_027 ➜	1/A/999:1006	NA	NA
27	HL_5ND8_028 ➜	1/A/1022:1029	NA	NA
28	HL_5ND8_029 ➜	1/A/1108:1118	NA	NA
29	HL_5ND8_030 ➜	1/A/1214:1218	NA	NA
30	HL_5ND8_031 ➜	1/A/1260:1265	NA	NA
31	HL_5ND8_032 ➜	1/A/1318:1326	NA	NA
32	HL_5ND8_033 ➜	1/A/1361:1367	NA	NA
33	HL_5ND8_034 ➜	1/A/1400:1405	NA	NA
34	HL_5ND8_035 ➜	1/A/1426:1435	NA	NA
35	HL_5ND8_036 ➜	1/A/1535:1541	NA	NA
36	HL_5ND8_037 ➜	1/A/1612:1615	NA	NA
37	HL_5ND8_038 ➜	1/A/1656:1663	NA	NA
38	HL_5ND8_039 ➜	1/A/1673:1681	NA	NA
39	HL_5ND8_040 ➜	1/A/1735:1740	NA	NA
40	HL_5ND8_041 ➜	1/A/1762:1767	NA	NA
41	HL_5ND8_042 ➜	1/A/1779:1783	NA	NA
42	HL_5ND8_043 ➜	1/A/1804:1814	NA	NA
43	HL_5ND8_044 ➜	1/A/1833:1838	NA	NA
44	HL_5ND8_045 ➜	1/A/1895:1900	NA	NA
45	HL_5ND8_047 ➜	1/A/1976:1984	NA	NA
46	HL_5ND8_048 ➜	1/A/2054:2063	NA	NA
47	HL_5ND8_049 ➜	1/A/2170:2175	NA	NA
48	HL_5ND8_050 ➜	1/A/2236:2242	NA	NA
49	HL_5ND8_051 ➜	1/A/2275:2283	NA	NA
50	HL_5ND8_052 ➜	1/A/2291:2303	NA	NA
51	HL_5ND8_053 ➜	1/A/2330:2340	NA	NA
52	HL_5ND8_054 ➜	1/A/2351:2358	NA	NA
53	HL_5ND8_055 ➜	1/A/2382:2389	NA	NA
54	HL_5ND8_056 ➜	1/A/2401:2406	NA	NA
55	HL_5ND8_057 ➜	1/A/2431:2440	NA	NA
56	HL_5ND8_058 ➜	1/A/2498:2506	NA	NA
57	HL_5ND8_059 ➜	1/A/2555:2562	NA	NA
58	HL_5ND8_060 ➜	1/A/2578:2584	NA	NA
59	HL_5ND8_061 ➜	1/A/2621:2626	NA	NA
60	HL_5ND8_062 ➜	1/A/2685:2690	NA	NA
61	HL_5ND8_063 ➜	1/A/2728:2733	NA	NA
62	HL_5ND8_064 ➜	1/A/2772:2786	NA	NA
63	HL_5ND8_065 ➜	1/A/2819:2824	NA	NA
64	HL_5ND8_066 ➜	1/A/2839:2847	NA	NA
65	HL_5ND8_067 ➜	1/A/2876:2881	NA	NA
66	HL_5ND8_068 ➜	1/B/36:42	NA	NA
67	HL_5ND8_069 ➜	1/B/79:92	NA	NA
68	HL_5ND8_070 ➜	1/a/13:23	NA	NA
69	HL_5ND8_071 ➜	1/a/80:89	NA	NA
70	HL_5ND8_072 ➜	1/a/158:163	NA	NA
71	HL_5ND8_073 ➜	1/a/193:198	NA	NA
72	HL_5ND8_074 ➜	1/a/217:223	NA	NA
73	HL_5ND8_075 ➜	1/a/267:275	NA	NA
74	HL_5ND8_076 ➜	1/a/304:309	NA	NA
75	HL_5ND8_077 ➜	1/a/328:341	NA	NA
76	HL_5ND8_078 ➜	1/a/350:355	NA	NA
77	HL_5ND8_079 ➜	1/a/387:392	NA	NA
78	HL_5ND8_080 ➜	1/a/427:432	NA	NA
79	HL_5ND8_081 ➜	1/a/471:479	NA	NA
80	HL_5ND8_082 ➜	1/a/530:535	NA	NA
81	HL_5ND8_083 ➜	1/a/625:631	NA	NA
82	HL_5ND8_084 ➜	1/a/697:706	NA	NA
83	HL_5ND8_085 ➜	1/a/734:739	NA	NA
84	HL_5ND8_086 ➜	1/a/794:804	NA	NA
85	HL_5ND8_087 ➜	1/a/848:856	NA	NA
86	HL_5ND8_088 ➜	1/a/872:877	NA	NA
87	HL_5ND8_089 ➜	1/a/907:912	NA	NA
88	HL_5ND8_090 ➜	1/a/973:982	NA	NA
89	HL_5ND8_091 ➜	1/a/1022:1027	NA	NA
90	HL_5ND8_092 ➜	1/a/1038:1045	NA	NA
91	HL_5ND8_093 ➜	1/a/1088:1093	NA	NA
92	HL_5ND8_094 ➜	1/a/1101:1108	NA	NA
93	HL_5ND8_095 ➜	1/a/1145:1152	NA	NA
94	HL_5ND8_096 ➜	1/a/1176:1182	NA	NA
95	HL_5ND8_097 ➜	1/a/1276:1281	NA	NA
96	HL_5ND8_098 ➜	1/a/1325:1334	NA	NA
97	HL_5ND8_099 ➜	1/a/1367:1377	NA	NA
98	HL_5ND8_100 ➜	1/a/1461:1465	NA	NA
99	HL_5ND8_101 ➜	1/a/1527:1532	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_5ND8_026 ➜	missing nts	NA
2	HL_5ND8_046 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_5ND8_001 ➜	1/A/24:30,1/A/555:561	NA	NA
2	IL_5ND8_002 ➜	1/A/36:37,1/A/488:490	NA	NA
3	IL_5ND8_003 ➜	1/A/43:44,1/A/480:482	NA	NA
4	IL_5ND8_004 ➜	1/A/81:85,1/A/97:104	NA	NA
5	IL_5ND8_005 ➜	1/A/152:153,1/A/175:177	NA	NA
6	IL_5ND8_006 ➜	1/A/186:187,1/A/215:217	NA	NA
7	IL_5ND8_007 ➜	1/A/190:197,1/A/204:212	NA	NA
8	IL_5ND8_008 ➜	1/A/241:248,1/A/256:262	NA	NA
9	IL_5ND8_009 ➜	1/A/304:306,1/A/409:413	NA	NA
10	IL_5ND8_010 ➜	1/A/336:338,1/A/386:390	NA	NA
11	IL_5ND8_011 ➜	1/A/527:530,1/A/541:554	NA	NA
12	IL_5ND8_012 ➜	1/A/581:584,1/A/597:600	NA	NA
13	IL_5ND8_013 ➜	1/A/607:609,1/A/618:620	NA	NA
14	IL_5ND8_014 ➜	1/A/638:640,1/A/705:707	NA	NA
15	IL_5ND8_015 ➜	1/A/649:653,1/A/663:667	NA	NA
16	IL_5ND8_016 ➜	1/A/717:719,1/A/851:853	NA	NA
17	IL_5ND8_017 ➜	1/A/719:723,1/A/844:851	NA	NA
18	IL_5ND8_018 ➜	1/A/742:743,1/A/808:810	NA	NA
19	IL_5ND8_019 ➜	1/A/747:752,1/A/769:775	NA	NA
20	IL_5ND8_020 ➜	1/A/783:785,1/A/802:803	NA	NA
21	IL_5ND8_021 ➜	1/A/820:822,1/A/832:836	NA	NA
22	IL_5ND8_022 ➜	1/A/882:883,1/A/984:986	NA	NA
23	IL_5ND8_023 ➜	1/A/889:893,1/A/975:978	NA	NA
24	IL_5ND8_024 ➜	1/A/897:898,1/A/969:971	NA	NA
25	IL_5ND8_025 ➜	1/A/901:907,1/A/960:966	NA	NA
26	IL_5ND8_026 ➜	1/A/907:908,1/A/958:960	NA	NA
27	IL_5ND8_027 ➜	1/A/909:913,1/A/954:957	NA	NA
28	IL_5ND8_028 ➜	1/A/915:917,1/A/950:952	NA	NA
29	IL_5ND8_029 ➜	1/A/920:924,1/A/943:947	NA	NA
30	IL_5ND8_030 ➜	1/A/924:929,1/A/937:943	NA	NA
31	IL_5ND8_031 ➜	1/A/1038:1040,1/A/1203:1204	NA	NA
32	IL_5ND8_032 ➜	1/A/1042:1046,1/A/1197:1201	NA	NA
33	IL_5ND8_033 ➜	1/A/1048:1055,1/A/1194:1195	NA	NA
34	IL_5ND8_034 ➜	1/A/1055:1057,1/A/1193:1194	NA	NA
35	IL_5ND8_035 ➜	1/A/1062:1068,1/A/1184:1188	NA	NA
36	IL_5ND8_036 ➜	1/A/1068:1074,1/A/1168:1184	NA	NA
37	IL_5ND8_037 ➜	1/A/1075:1078,1/A/1165:1167	NA	NA
38	IL_5ND8_038 ➜	1/A/1081:1083,1/A/1160:1162	NA	NA
39	IL_5ND8_039 ➜	1/A/1087:1095,1/A/1152:1156	NA	NA
40	IL_5ND8_040 ➜	1/A/1098:1101,1/A/1125:1149	NA	NA
41	IL_5ND8_041 ➜	1/A/1103:1107,1/A/1119:1123	NA	NA
42	IL_5ND8_042 ➜	1/A/1243:1245,1/A/1277:1279	NA	NA
43	IL_5ND8_043 ➜	1/A/1246:1253,1/A/1272:1276	NA	NA
44	IL_5ND8_044 ➜	1/A/1257:1259,1/A/1266:1268	NA	NA
45	IL_5ND8_045 ➜	1/A/1300:1307,1/A/2038:2044	NA	NA
46	IL_5ND8_046 ➜	1/A/1347:1350,1/A/1647:1648	NA	NA
47	IL_5ND8_047 ➜	1/A/1356:1360,1/A/1368:1370	NA	NA
48	IL_5ND8_048 ➜	1/A/1388:1392,1/A/1413:1417	NA	NA
49	IL_5ND8_049 ➜	1/A/1394:1398,1/A/1407:1411	NA	NA
50	IL_5ND8_050 ➜	1/A/1447:1460,1/A/1628:1636	NA	NA
51	IL_5ND8_051 ➜	1/A/1461:1465,1/A/1624:1627	NA	NA
52	IL_5ND8_052 ➜	1/A/1476:1480,1/A/1604:1608	NA	NA
53	IL_5ND8_053 ➜	1/A/1511:1515,1/A/1565:1570	NA	NA
54	IL_5ND8_054 ➜	1/A/1518:1522,1/A/1558:1562	NA	NA
55	IL_5ND8_055 ➜	1/A/1524:1526,1/A/1549:1556	NA	NA
56	IL_5ND8_056 ➜	1/A/1532:1534,1/A/1542:1543	NA	NA
57	IL_5ND8_057 ➜	1/A/1695:1700,1/A/2031:2033	NA	NA
58	IL_5ND8_058 ➜	1/A/1707:1709,1/A/2022:2024	NA	NA
59	IL_5ND8_059 ➜	1/A/1710:1713,1/A/2020:2021	NA	NA
60	IL_5ND8_060 ➜	1/A/1713:1718,1/A/2017:2020	NA	NA
61	IL_5ND8_061 ➜	1/A/1730:1735,1/A/1740:1746	NA	NA
62	IL_5ND8_062 ➜	1/A/1757:1759,1/A/1770:1772	NA	NA
63	IL_5ND8_063 ➜	1/A/1797:1798,1/A/2007:2009	NA	NA
64	IL_5ND8_064 ➜	1/A/1825:1831,1/A/1840:1848	NA	NA
65	IL_5ND8_065 ➜	1/A/1864:1867,1/A/1929:1930	NA	NA
66	IL_5ND8_066 ➜	1/A/1868:1869,1/A/1925:1928	NA	NA
67	IL_5ND8_067 ➜	1/A/1873:1876,1/A/1920:1921	NA	NA
68	IL_5ND8_068 ➜	1/A/1878:1882,1/A/1914:1918	NA	NA
69	IL_5ND8_069 ➜	1/A/1883:1887,1/A/1909:1913	NA	NA
70	IL_5ND8_070 ➜	1/A/1890:1894,1/A/1901:1906	NA	NA
71	IL_5ND8_071 ➜	1/A/1960:1961,1/A/1991:1994	NA	NA
72	IL_5ND8_072 ➜	1/A/1961:1972,1/A/1988:1991	NA	NA
73	IL_5ND8_073 ➜	1/A/2077:2079,1/A/2644:2645	NA	NA
74	IL_5ND8_074 ➜	1/A/2081:2083,1/A/2639:2642	NA	NA
75	IL_5ND8_075 ➜	1/A/2094:2096,1/A/2469:2470	NA	NA
76	IL_5ND8_076 ➜	1/A/2096:2099,1/A/2464:2469	NA	NA
77	IL_5ND8_077 ➜	1/A/2108:2110,1/A/2263:2266	NA	NA
78	IL_5ND8_078 ➜	1/A/2123:2125,1/A/2218:2220	NA	NA
79	IL_5ND8_079 ➜	1/A/2135:2137,1/A/2206:2208	NA	NA
80	IL_5ND8_080 ➜	1/A/2137:2147,1/A/2205:2206	NA	NA
81	IL_5ND8_081 ➜	1/A/2151:2154,1/A/2188:2201	NA	NA
82	IL_5ND8_082 ➜	1/A/2156:2163,1/A/2182:2186	NA	NA
83	IL_5ND8_083 ➜	1/A/2229:2231,1/A/2247:2248	NA	NA
84	IL_5ND8_084 ➜	1/A/2324:2326,1/A/2344:2348	NA	NA
85	IL_5ND8_085 ➜	1/A/2377:2380,1/A/2391:2394	NA	NA
86	IL_5ND8_086 ➜	1/A/2428:2430,1/A/2441:2442	NA	NA
87	IL_5ND8_087 ➜	1/A/2480:2481,1/A/2525:2527	NA	NA
88	IL_5ND8_088 ➜	1/A/2481:2482,1/A/2523:2525	NA	NA
89	IL_5ND8_089 ➜	1/A/2484:2486,1/A/2520:2521	NA	NA
90	IL_5ND8_090 ➜	1/A/2486:2488,1/A/2516:2520	NA	NA
91	IL_5ND8_091 ➜	1/A/2493:2497,1/A/2507:2511	NA	NA
92	IL_5ND8_092 ➜	1/A/2534:2535,1/A/2607:2609	NA	NA
93	IL_5ND8_093 ➜	1/A/2537:2539,1/A/2601:2605	NA	NA
94	IL_5ND8_094 ➜	1/A/2539:2540,1/A/2598:2601	NA	NA
95	IL_5ND8_095 ➜	1/A/2549:2550,1/A/2567:2570	NA	NA
96	IL_5ND8_096 ➜	1/A/2618:2619,1/A/2628:2630	NA	NA
97	IL_5ND8_097 ➜	1/A/2663:2667,1/A/2801:2809	NA	NA
98	IL_5ND8_098 ➜	1/A/2679:2685,1/A/2690:2695	NA	NA
99	IL_5ND8_099 ➜	1/A/2707:2711,1/A/2752:2754	NA	NA
100	IL_5ND8_100 ➜	1/A/2714:2718,1/A/2745:2749	NA	NA
101	IL_5ND8_101 ➜	1/A/2722:2723,1/A/2738:2741	NA	NA
102	IL_5ND8_102 ➜	1/A/2764:2769,1/A/2789:2794	NA	NA
103	IL_5ND8_103 ➜	1/A/2858:2861,1/A/2896:2900	NA	NA
104	IL_5ND8_104 ➜	1/A/2863:2865,1/A/2891:2894	NA	NA
105	IL_5ND8_105 ➜	1/A/2867:2872,1/A/2885:2889	NA	NA
106	IL_5ND8_106 ➜	1/B/2:5,1/B/110:113	NA	NA
107	IL_5ND8_107 ➜	1/B/5:8,1/B/107:110	NA	NA
108	IL_5ND8_108 ➜	1/B/15:16,1/B/63:65	NA	NA
109	IL_5ND8_109 ➜	1/B/20:27,1/B/53:59	NA	NA
110	IL_5ND8_110 ➜	1/B/28:29,1/B/49:52	NA	NA
111	IL_5ND8_111 ➜	1/B/32:36,1/B/42:46	NA	NA
112	IL_5ND8_112 ➜	1/B/77:79,1/B/92:94	NA	NA
113	IL_5ND8_113 ➜	1/a/31:33,1/a/560:561	NA	NA
114	IL_5ND8_114 ➜	1/a/45:46,1/a/404:406	NA	NA
115	IL_5ND8_115 ➜	1/a/48:53,1/a/367:369	NA	NA
116	IL_5ND8_116 ➜	1/a/55:57,1/a/364:365	NA	NA
117	IL_5ND8_117 ➜	1/a/64:67,1/a/102:103	NA	NA
118	IL_5ND8_118 ➜	1/a/68:71,1/a/98:101	NA	NA
119	IL_5ND8_119 ➜	1/a/72:79,1/a/90:97	NA	NA
120	IL_5ND8_120 ➜	1/a/128:131,1/a/239:240	NA	NA
121	IL_5ND8_121 ➜	1/a/132:136,1/a/235:238	NA	NA
122	IL_5ND8_122 ➜	1/a/147:153,1/a/168:175	NA	NA
123	IL_5ND8_123 ➜	1/a/154:156,1/a/165:167	NA	NA
124	IL_5ND8_124 ➜	1/a/250:255,1/a/285:292	NA	NA
125	IL_5ND8_125 ➜	1/a/257:260,1/a/282:283	NA	NA
126	IL_5ND8_126 ➜	1/a/300:301,1/a/312:316	NA	NA
127	IL_5ND8_127 ➜	1/a/375:377,1/a/400:401	NA	NA
128	IL_5ND8_128 ➜	1/a/379:383,1/a/397:398	NA	NA
129	IL_5ND8_129 ➜	1/a/383:384,1/a/395:397	NA	NA
130	IL_5ND8_130 ➜	1/a/417:424,1/a/435:441	NA	NA
131	IL_5ND8_131 ➜	1/a/468:471,1/a/479:481	NA	NA
132	IL_5ND8_132 ➜	1/a/512:519,1/a/548:549	NA	NA
133	IL_5ND8_133 ➜	1/a/523:529,1/a/536:544	NA	NA
134	IL_5ND8_134 ➜	1/a/577:583,1/a/890:891	NA	NA
135	IL_5ND8_135 ➜	1/a/588:592,1/a/765:769	NA	NA
136	IL_5ND8_136 ➜	1/a/602:604,1/a/652:653	NA	NA
137	IL_5ND8_137 ➜	1/a/605:606,1/a/648:651	NA	NA
138	IL_5ND8_138 ➜	1/a/612:613,1/a/640:642	NA	NA
139	IL_5ND8_139 ➜	1/a/613:620,1/a/636:640	NA	NA
140	IL_5ND8_140 ➜	1/a/662:663,1/a/759:762	NA	NA
141	IL_5ND8_141 ➜	1/a/664:667,1/a/754:758	NA	NA
142	IL_5ND8_142 ➜	1/a/670:674,1/a/748:751	NA	NA
143	IL_5ND8_143 ➜	1/a/681:686,1/a/720:725	NA	NA
144	IL_5ND8_144 ➜	1/a/692:696,1/a/707:714	NA	NA
145	IL_5ND8_145 ➜	1/a/782:787,1/a/811:813	NA	NA
146	IL_5ND8_146 ➜	1/a/787:791,1/a/807:811	NA	NA
147	IL_5ND8_147 ➜	1/a/897:904,1/a/915:920	NA	NA
148	IL_5ND8_148 ➜	1/a/932:933,1/a/1404:1406	NA	NA
149	IL_5ND8_149 ➜	1/a/935:937,1/a/1401:1402	NA	NA
150	IL_5ND8_150 ➜	1/a/943:945,1/a/1391:1395	NA	NA
151	IL_5ND8_151 ➜	1/a/963:964,1/a/1237:1239	NA	NA
152	IL_5ND8_152 ➜	1/a/1003:1007,1/a/1056:1057	NA	NA
153	IL_5ND8_153 ➜	1/a/1008:1009,1/a/1053:1055	NA	NA
154	IL_5ND8_154 ➜	1/a/1010:1011,1/a/1050:1052	NA	NA
155	IL_5ND8_155 ➜	1/a/1036:1038,1/a/1045:1046	NA	NA
156	IL_5ND8_156 ➜	1/a/1060:1062,1/a/1219:1220	NA	NA
157	IL_5ND8_157 ➜	1/a/1064:1068,1/a/1215:1217	NA	NA
158	IL_5ND8_158 ➜	1/a/1069:1070,1/a/1210:1214	NA	NA
159	IL_5ND8_159 ➜	1/a/1072:1073,1/a/1206:1208	NA	NA
160	IL_5ND8_160 ➜	1/a/1073:1075,1/a/1204:1206	NA	NA
161	IL_5ND8_161 ➜	1/a/1136:1139,1/a/1156:1160	NA	NA
162	IL_5ND8_162 ➜	1/a/1141:1144,1/a/1153:1154	NA	NA
163	IL_5ND8_163 ➜	1/a/1169:1172,1/a/1186:1192	NA	NA
164	IL_5ND8_164 ➜	1/a/1258:1264,1/a/1295:1301	NA	NA
165	IL_5ND8_165 ➜	1/a/1266:1269,1/a/1288:1293	NA	NA
166	IL_5ND8_166 ➜	1/a/1270:1274,1/a/1283:1287	NA	NA
167	IL_5ND8_167 ➜	1/a/1314:1319,1/a/1340:1345	NA	NA
168	IL_5ND8_168 ➜	1/a/1410:1412,1/a/1513:1516	NA	NA
169	IL_5ND8_169 ➜	1/a/1412:1415,1/a/1509:1513	NA	NA
170	IL_5ND8_170 ➜	1/a/1416:1418,1/a/1506:1508	NA	NA
171	IL_5ND8_171 ➜	1/a/1418:1420,1/a/1503:1506	NA	NA
172	IL_5ND8_172 ➜	1/a/1423:1425,1/a/1498:1500	NA	NA
173	IL_5ND8_173 ➜	1/a/1427:1430,1/a/1493:1496	NA	NA
174	IL_5ND8_174 ➜	1/a/1435:1438,1/a/1485:1488	NA	NA
175	IL_5ND8_175 ➜	1/a/1441:1446,1/a/1478:1482	NA	NA
176	IL_5ND8_176 ➜	1/a/1446:1448,1/a/1476:1478	NA	NA
177	IL_5ND8_177 ➜	1/a/1451:1454,1/a/1471:1473	NA	NA
178	IL_5ND8_178 ➜	1/a/1456:1459,1/a/1467:1469	NA	NA

Problematic loops

No problematic loops

Valid loops

#	loop id	location	annotation	motif
1	J3_5ND8_001 ➜	1/A/30:31,1/A/520:527,1/A/554:555	NA	NA
2	J3_5ND8_002 ➜	1/A/56:57,1/A/70:76,1/A/109:113	NA	NA
3	J3_5ND8_003 ➜	1/A/272:276,1/A/295:302,1/A/415:416	NA	NA
4	J3_5ND8_004 ➜	1/A/728:734,1/A/818:820,1/A/836:839	NA	NA
5	J3_5ND8_005 ➜	1/A/743:745,1/A/777:781,1/A/805:808	NA	NA
6	J3_5ND8_006 ➜	1/A/1335:1340,1/A/1669:1671,1/A/1683:1686	NA	NA
7	J3_5ND8_007 ➜	1/A/1343:1346,1/A/1649:1655,1/A/1664:1666	NA	NA
8	J3_5ND8_008 ➜	1/A/1381:1387,1/A/1418:1422,1/A/1439:1440	NA	NA
9	J3_5ND8_009 ➜	1/A/2118:2120,1/A/2223:2228,1/A/2249:2255	NA	NA
10	J3_5ND8_010 ➜	1/A/2322:2324,1/A/2348:2350,1/A/2359:2364	NA	NA
11	J3_5ND8_011 ➜	1/A/2544:2547,1/A/2572:2574,1/A/2588:2594	NA	NA
12	J3_5ND8_012 ➜	1/A/2816:2817,1/A/2826:2831,1/A/2909:2913	NA	NA
13	J3_5ND8_013 ➜	1/A/2834:2835,1/A/2851:2856,1/A/2902:2906	NA	NA
14	J3_5ND8_014 ➜	1/a/47:48,1/a/369:375,1/a/401:403	NA	NA
15	J3_5ND8_015 ➜	1/a/594:596,1/a/659:662,1/a/762:763	NA	NA
16	J3_5ND8_016 ➜	1/a/680:681,1/a/725:733,1/a/740:742	NA	NA
17	J3_5ND8_017 ➜	1/a/834:837,1/a/867:871,1/a/878:884	NA	NA
18	J3_5ND8_018 ➜	1/a/953:956,1/a/1246:1248,1/a/1348:1351	NA	NA
19	J3_5ND8_019 ➜	1/a/965:972,1/a/983:994,1/a/1232:1236	NA	NA
20	J3_5ND8_020 ➜	1/a/1000:1003,1/a/1057:1059,1/a/1221:1226	NA	NA
21	J3_5ND8_021 ➜	1/a/1011:1018,1/a/1031:1036,1/a/1046:1050	NA	NA
22	J3_5ND8_022 ➜	1/a/1075:1080,1/a/1119:1125,1/a/1198:1204	NA	NA
23	J3_5ND8_023 ➜	1/a/1085:1086,1/a/1095:1099,1/a/1110:1114	NA	NA
24	J3_5ND8_024 ➜	1/a/1128:1130,1/a/1166:1169,1/a/1192:1195	NA	NA
25	J3_5ND8_025 ➜	1/a/1248:1252,1/a/1307:1314,1/a/1345:1348	NA	NA

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers

5ND8 Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops