4LNT Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4LNT_001 | 1/QA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_67265.4 | |
| HL_4LNT_003 | 1/QA/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_43074.18 | |
| HL_4LNT_004 | 1/QA/186F:191A | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_44730.2 | |
| HL_4LNT_005 | 1/QA/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_57052.3 | |
| HL_4LNT_006 | 1/QA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_93727.5 | |
| HL_4LNT_007 | 1/QA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_43074.18 | |
| HL_4LNT_008 | 1/QA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4LNT_009 | 1/QA/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_79299.11 | |
| HL_4LNT_010 | 1/QA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_43074.18 | |
| HL_4LNT_011 | 1/QA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_79299.11 | |
| HL_4LNT_012 | 1/QA/458:474 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_68304.6 | |
| HL_4LNT_013 | 1/QA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_62869.3 | |
| HL_4LNT_014 | 1/QA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26055.6 | |
| HL_4LNT_015 | 1/QA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_87219.4 | |
| HL_4LNT_016 | 1/QA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_43074.18 | |
| HL_4LNT_017 | 1/QA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_87219.4 | |
| HL_4LNT_018 | 1/QA/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_18722.3 | |
| HL_4LNT_019 | 1/QA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_43074.18 | |
| HL_4LNT_020 | 1/QA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_43074.18 | |
| HL_4LNT_021 | 1/QA/963:972 | No text annotation Not in a motif group | ||
| HL_4LNT_022 | 1/QA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_43074.18 | |
| HL_4LNT_024 | 1/QA/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_43074.18 | |
| HL_4LNT_025 | 1/QA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_54035.7 | |
| HL_4LNT_026 | 1/QA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_4LNT_027 | 1/QA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_43074.18 | |
| HL_4LNT_028 | 1/QA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_43074.18 | |
| HL_4LNT_029 | 1/QA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_78061.2 | |
| HL_4LNT_030 | 1/QA/1356:1366 | No text annotation Not in a motif group | ||
| HL_4LNT_031 | 1/QA/1449:1454 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_18722.3 | |
| HL_4LNT_032 | 1/QA/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_4LNT_033 | 1/QV/12:22 | No text annotation Not in a motif group | homologous HL_4TUE_033 HL_51876.1 | |
| HL_4LNT_034 | 1/QV/31:39 | No text annotation Not in a motif group | homologous HL_5E81_212 NA | |
| HL_4LNT_035 | 1/QV/52:62 | No text annotation Not in a motif group | homologous HL_4WSM_226 HL_87219.4 | |
| HL_4LNT_037 | 1/RA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_29414.1 | |
| HL_4LNT_038 | 1/RA/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_17926.5 | |
| HL_4LNT_039 | 1/RA/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_62869.3 | |
| HL_4LNT_040 | 1/RA/137A:141A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_86069.1 | |
| HL_4LNT_042 | 1/RA/194:201 | No text annotation Not in a motif group | geometric HL_7RQB_006 HL_23481.5 | |
| HL_4LNT_043 | 1/RA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_06569.2 | |
| HL_4LNT_044 | 1/RA/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.5 | |
| HL_4LNT_045 | 1/RA/270J:270P | No text annotation Not in a motif group | ||
| HL_4LNT_046 | 1/RA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_68493.6 | |
| HL_4LNT_047 | 1/RA/319:323 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_98557.5 | |
| HL_4LNT_048 | 1/RA/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.6 | |
| HL_4LNT_049 | 1/RA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.3 | |
| HL_4LNT_050 | 1/RA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_32512.8 | |
| HL_4LNT_051 | 1/RA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_43074.18 | |
| HL_4LNT_052 | 1/RA/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_43074.18 | |
| HL_4LNT_053 | 1/RA/544:549 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_40469.1 | |
| HL_4LNT_054 | 1/RA/566:575 | No text annotation Not in a motif group | homologous HL_7RQB_018 HL_33239.17 | |
| HL_4LNT_055 | 1/RA/611:617 | No text annotation Not in a motif group | homologous HL_7A0S_019 HL_22515.1 | |
| HL_4LNT_056 | 1/RA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_43074.18 | |
| HL_4LNT_057 | 1/RA/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_02361.6 | |
| HL_4LNT_058 | 1/RA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_93727.5 | |
| HL_4LNT_059 | 1/RA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.5 | |
| HL_4LNT_060 | 1/RA/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_77081.1 | |
| HL_4LNT_061 | 1/RA/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_15942.5 | |
| HL_4LNT_062 | 1/RA/883:893 | No text annotation Not in a motif group | ||
| HL_4LNT_063 | 1/RA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_43074.18 | |
| HL_4LNT_064 | 1/RA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_72451.5 | |
| HL_4LNT_065 | 1/RA/1064:1074 | No text annotation Not in a motif group | homologous HL_5J7L_161 HL_92304.3 | |
| HL_4LNT_067 | 1/RA/1170:1179 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_18218.2 | |
| HL_4LNT_068 | 1/RA/1223:1228 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_43074.18 | |
| HL_4LNT_069 | 1/RA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_33239.17 | |
| HL_4LNT_070 | 1/RA/1324:1330 | No text annotation Not in a motif group | homologous HL_7A0S_033 HL_86880.5 | |
| HL_4LNT_071 | 1/RA/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_43074.18 | |
| HL_4LNT_072 | 1/RA/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_78457.4 | |
| HL_4LNT_073 | 1/RA/1451:1459 | No text annotation Not in a motif group | homologous HL_7RQB_037 HL_71540.1 | |
| HL_4LNT_074 | 1/RA/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_86880.5 | |
| HL_4LNT_075 | 1/RA/1533:1538 | No text annotation Not in a motif group | ||
| HL_4LNT_076 | 1/RA/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_69353.7 | |
| HL_4LNT_077 | 1/RA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_66171.3 | |
| HL_4LNT_078 | 1/RA/1630A:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_86880.5 | |
| HL_4LNT_079 | 1/RA/1691:1696 | UNCG Not in a motif group | homologous HL_5J7L_175 HL_79299.11 | |
| HL_4LNT_080 | 1/RA/1727:1733 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_49638.1 | |
| HL_4LNT_081 | 1/RA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_79272.3 | |
| HL_4LNT_082 | 1/RA/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.4 | |
| HL_4LNT_083 | 1/RA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_43074.18 | |
| HL_4LNT_084 | 1/RA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_43074.18 | |
| HL_4LNT_085 | 1/RA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_98248.1 | |
| HL_4LNT_086 | 1/RA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_53760.4 | |
| HL_4LNT_087 | 1/RA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.5 | |
| HL_4LNT_089 | 1/RA/2209:2215 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_82131.1 | |
| HL_4LNT_090 | 1/RA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4LNT_091 | 1/RA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.5 | |
| HL_4LNT_092 | 1/RA/2303:2313 | No text annotation Not in a motif group | homologous HL_5J7L_188 HL_11805.3 | |
| HL_4LNT_093 | 1/RA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_46142.8 | |
| HL_4LNT_094 | 1/RA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_93727.5 | |
| HL_4LNT_095 | 1/RA/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_43074.18 | |
| HL_4LNT_096 | 1/RA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_48376.4 | |
| HL_4LNT_097 | 1/RA/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_36421.5 | |
| HL_4LNT_098 | 1/RA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_92681.5 | |
| HL_4LNT_099 | 1/RA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_26055.6 | |
| HL_4LNT_100 | 1/RA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_43074.18 | |
| HL_4LNT_101 | 1/RA/2658:2663 | GNRA Not in a motif group | geometric HL_5J7L_197 HL_43074.18 | |
| HL_4LNT_102 | 1/RA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_31583.1 | |
| HL_4LNT_103 | 1/RA/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.5 | |
| HL_4LNT_105 | 1/RA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_05018.6 | |
| HL_4LNT_106 | 1/RA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_43074.18 | |
| HL_4LNT_107 | 1/RB/38:44 | No text annotation Not in a motif group | geometric HL_1MJI_002 HL_02733.5 | |
| HL_4LNT_108 | 1/RB/86:90 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_43074.18 | |
| HL_4LNT_109 | 1/XA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_67265.4 | |
| HL_4LNT_111 | 1/XA/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_43074.18 | |
| HL_4LNT_112 | 1/XA/186F:191A | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_44730.2 | |
| HL_4LNT_113 | 1/XA/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_57052.3 | |
| HL_4LNT_114 | 1/XA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_93727.5 | |
| HL_4LNT_115 | 1/XA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_43074.18 | |
| HL_4LNT_116 | 1/XA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4LNT_117 | 1/XA/343:347 | No text annotation Not in a motif group | ||
| HL_4LNT_118 | 1/XA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_43074.18 | |
| HL_4LNT_119 | 1/XA/419:424 | No text annotation Not in a motif group | homologous HL_6CZR_082 HL_79299.11 | |
| HL_4LNT_120 | 1/XA/458:474 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_68304.6 | |
| HL_4LNT_121 | 1/XA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_62869.3 | |
| HL_4LNT_122 | 1/XA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26055.6 | |
| HL_4LNT_123 | 1/XA/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_87219.4 | |
| HL_4LNT_124 | 1/XA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_43074.18 | |
| HL_4LNT_125 | 1/XA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_87219.4 | |
| HL_4LNT_126 | 1/XA/838:848 | No text annotation Not in a motif group | ||
| HL_4LNT_127 | 1/XA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_43074.18 | |
| HL_4LNT_128 | 1/XA/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_43074.18 | |
| HL_4LNT_129 | 1/XA/963:972 | No text annotation Not in a motif group | ||
| HL_4LNT_130 | 1/XA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_43074.18 | |
| HL_4LNT_132 | 1/XA/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_43074.18 | |
| HL_4LNT_133 | 1/XA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_54035.7 | |
| HL_4LNT_134 | 1/XA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_4LNT_135 | 1/XA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_43074.18 | |
| HL_4LNT_136 | 1/XA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_43074.18 | |
| HL_4LNT_137 | 1/XA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_78061.2 | |
| HL_4LNT_138 | 1/XA/1356:1366 | No text annotation Not in a motif group | ||
| HL_4LNT_139 | 1/XA/1449:1454 | No text annotation Not in a motif group | geometric HL_5TBW_004 HL_36982.3 | |
| HL_4LNT_140 | 1/XA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4LNT_141 | 1/XV/12:22 | No text annotation Not in a motif group | homologous HL_4TUE_033 HL_51876.1 | |
| HL_4LNT_142 | 1/XV/31:39 | No text annotation Not in a motif group | homologous HL_5E81_212 NA | |
| HL_4LNT_143 | 1/XV/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4TUE_035 HL_33239.17 | |
| HL_4LNT_145 | 1/YA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_29414.1 | |
| HL_4LNT_146 | 1/YA/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_17926.5 | |
| HL_4LNT_147 | 1/YA/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_62869.3 | |
| HL_4LNT_148 | 1/YA/137A:141A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_86069.1 | |
| HL_4LNT_150 | 1/YA/194:201 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_23481.5 | |
| HL_4LNT_151 | 1/YA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_06569.2 | |
| HL_4LNT_152 | 1/YA/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.5 | |
| HL_4LNT_153 | 1/YA/270K:270N | No text annotation Not in a motif group | homologous HL_7RQB_009 HL_69353.7 | |
| HL_4LNT_154 | 1/YA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_68493.6 | |
| HL_4LNT_155 | 1/YA/319:323 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_98557.5 | |
| HL_4LNT_156 | 1/YA/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.6 | |
| HL_4LNT_157 | 1/YA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.3 | |
| HL_4LNT_158 | 1/YA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_32512.8 | |
| HL_4LNT_159 | 1/YA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_43074.18 | |
| HL_4LNT_160 | 1/YA/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_43074.18 | |
| HL_4LNT_161 | 1/YA/544:549 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_40469.1 | |
| HL_4LNT_162 | 1/YA/566:575 | No text annotation Not in a motif group | homologous HL_7RQB_018 HL_33239.17 | |
| HL_4LNT_163 | 1/YA/611:617 | No text annotation Not in a motif group | homologous HL_7A0S_019 HL_22515.1 | |
| HL_4LNT_164 | 1/YA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_43074.18 | |
| HL_4LNT_165 | 1/YA/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_02361.6 | |
| HL_4LNT_166 | 1/YA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_93727.5 | |
| HL_4LNT_167 | 1/YA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.5 | |
| HL_4LNT_168 | 1/YA/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_77081.1 | |
| HL_4LNT_169 | 1/YA/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_15942.5 | |
| HL_4LNT_170 | 1/YA/884:892 | No text annotation Not in a motif group | ||
| HL_4LNT_171 | 1/YA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_43074.18 | |
| HL_4LNT_172 | 1/YA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_72451.5 | |
| HL_4LNT_173 | 1/YA/1064:1074 | No text annotation Not in a motif group | homologous HL_5J7L_161 HL_92304.3 | |
| HL_4LNT_174 | 1/YA/1092:1099 | No text annotation Not in a motif group | ||
| HL_4LNT_175 | 1/YA/1171:1178 | No text annotation Not in a motif group | geometric HL_5U30_001 HL_69353.7 | |
| HL_4LNT_176 | 1/YA/1223:1228 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_43074.18 | |
| HL_4LNT_177 | 1/YA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_33239.17 | |
| HL_4LNT_178 | 1/YA/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_86880.5 | |
| HL_4LNT_179 | 1/YA/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_43074.18 | |
| HL_4LNT_180 | 1/YA/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_78457.4 | |
| HL_4LNT_181 | 1/YA/1451:1459 | No text annotation Not in a motif group | geometric HL_7RQB_037 HL_71540.1 | |
| HL_4LNT_182 | 1/YA/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_86880.5 | |
| HL_4LNT_183 | 1/YA/1533:1538 | No text annotation Not in a motif group | ||
| HL_4LNT_184 | 1/YA/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_69353.7 | |
| HL_4LNT_185 | 1/YA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_66171.3 | |
| HL_4LNT_186 | 1/YA/1630A:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_86880.5 | |
| HL_4LNT_187 | 1/YA/1691:1696 | UNCG Not in a motif group | geometric HL_4V9F_044 HL_79299.11 | |
| HL_4LNT_188 | 1/YA/1727:1733 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_49638.1 | |
| HL_4LNT_189 | 1/YA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_79272.3 | |
| HL_4LNT_190 | 1/YA/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.4 | |
| HL_4LNT_191 | 1/YA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_43074.18 | |
| HL_4LNT_192 | 1/YA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_43074.18 | |
| HL_4LNT_193 | 1/YA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_98248.1 | |
| HL_4LNT_194 | 1/YA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_53760.4 | |
| HL_4LNT_195 | 1/YA/1992:1996 | No text annotation Not in a motif group | ||
| HL_4LNT_196 | 1/YA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.5 | |
| HL_4LNT_198 | 1/YA/2209:2215 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_82131.1 | |
| HL_4LNT_199 | 1/YA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4LNT_200 | 1/YA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.5 | |
| HL_4LNT_201 | 1/YA/2303:2313 | No text annotation Not in a motif group | homologous HL_5J7L_188 HL_11805.3 | |
| HL_4LNT_202 | 1/YA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_46142.8 | |
| HL_4LNT_203 | 1/YA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_93727.5 | |
| HL_4LNT_204 | 1/YA/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_43074.18 | |
| HL_4LNT_205 | 1/YA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_48376.4 | |
| HL_4LNT_206 | 1/YA/2471:2479 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_36421.5 | |
| HL_4LNT_207 | 1/YA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_92681.5 | |
| HL_4LNT_208 | 1/YA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_26055.6 | |
| HL_4LNT_209 | 1/YA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_43074.18 | |
| HL_4LNT_210 | 1/YA/2658:2663 | GNRA Not in a motif group | geometric HL_4V9F_066 HL_43074.18 | |
| HL_4LNT_211 | 1/YA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_31583.1 | |
| HL_4LNT_212 | 1/YA/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.5 | |
| HL_4LNT_214 | 1/YA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_05018.6 | |
| HL_4LNT_215 | 1/YA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_43074.18 | |
| HL_4LNT_216 | 1/YB/38:44 | No text annotation Not in a motif group | homologous HL_7RQB_070 HL_02733.5 | |
| HL_4LNT_217 | 1/YB/86:90 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_43074.18 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4LNT_002 | No text annotation | ||
| HL_4LNT_023 | No text annotation | ||
| HL_4LNT_036 | tRNA anticodon loop | ||
| HL_4LNT_041 | No text annotation | ||
| HL_4LNT_066 | No text annotation | ||
| HL_4LNT_088 | UNCG | ||
| HL_4LNT_104 | No text annotation | ||
| HL_4LNT_110 | No text annotation | ||
| HL_4LNT_131 | No text annotation | ||
| HL_4LNT_144 | tRNA anticodon loop | ||
| HL_4LNT_149 | No text annotation | ||
| HL_4LNT_197 | UNCG | ||
| HL_4LNT_213 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4LNT_001 | 1/QA/30:32, 1/QA/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_59137.10 | |
| IL_4LNT_002 | 1/QA/44:45, 1/QA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_80007.16 | |
| IL_4LNT_003 | 1/QA/47:52, 1/QA/359:361 | No text annotation Not in a motif group | geometric IL_4LFB_003 IL_34626.4 | |
| IL_4LNT_004 | 1/QA/54:56, 1/QA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_06437.11 | |
| IL_4LNT_005 | 1/QA/63:66, 1/QA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_13730.12 | |
| IL_4LNT_006 | 1/QA/67:69, 1/QA/99:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_01312.13 | |
| IL_4LNT_007 | 1/QA/129:131, 1/QA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_13730.12 | |
| IL_4LNT_008 | 1/QA/132:136, 1/QA/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.1 | |
| IL_4LNT_009 | 1/QA/148:153, 1/QA/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_87677.1 | |
| IL_4LNT_010 | 1/QA/185:186B, 1/QA/191E:192 | No text annotation Not in a motif group | ||
| IL_4LNT_011 | 1/QA/242:247, 1/QA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_29549.9 | |
| IL_4LNT_012 | 1/QA/249:252, 1/QA/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_83121.7 | |
| IL_4LNT_013 | 1/QA/292:293, 1/QA/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_08376.2 | |
| IL_4LNT_014 | 1/QA/367:369, 1/QA/392:393 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.11 | |
| IL_4LNT_015 | 1/QA/371:375, 1/QA/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_08376.2 | |
| IL_4LNT_016 | 1/QA/375:376, 1/QA/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_59137.10 | |
| IL_4LNT_017 | 1/QA/409:416, 1/QA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_45257.1 | |
| IL_4LNT_018 | 1/QA/446:450, 1/QA/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.2 | |
| IL_4LNT_019 | 1/QA/450:455, 1/QA/477:483 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
| IL_4LNT_020 | 1/QA/504:511, 1/QA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.6 | |
| IL_4LNT_021 | 1/QA/515:521, 1/QA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_04667.1 | |
| IL_4LNT_022 | 1/QA/569:575, 1/QA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_19222.1 | |
| IL_4LNT_023 | 1/QA/580:584, 1/QA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_39521.5 | |
| IL_4LNT_024 | 1/QA/594:596, 1/QA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_80663.10 | |
| IL_4LNT_025 | 1/QA/597:598, 1/QA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.4 | |
| IL_4LNT_026 | 1/QA/605:612, 1/QA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_96596.1 | |
| IL_4LNT_027 | 1/QA/654:655, 1/QA/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4LFB_027 IL_80663.10 | |
| IL_4LNT_028 | 1/QA/657:658, 1/QA/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_80663.10 | |
| IL_4LNT_029 | 1/QA/662:666, 1/QA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_85877.10 | |
| IL_4LNT_030 | 1/QA/673:678, 1/QA/712:717 | No text annotation Not in a motif group | geometric IL_4LFB_030 IL_94518.4 | |
| IL_4LNT_031 | 1/QA/683:688, 1/QA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4LNT_032 | 1/QA/774:778, 1/QA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_19389.4 | |
| IL_4LNT_033 | 1/QA/779:783, 1/QA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_39521.5 | |
| IL_4LNT_034 | 1/QA/887:894, 1/QA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.1 | |
| IL_4LNT_035 | 1/QA/922:923, 1/QA/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_80007.16 | |
| IL_4LNT_036 | 1/QA/925:927, 1/QA/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_59137.10 | |
| IL_4LNT_037 | 1/QA/933:935, 1/QA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_94431.4 | |
| IL_4LNT_038 | 1/QA/953:954, 1/QA/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_06437.11 | |
| IL_4LNT_039 | 1/QA/1048:1050, 1/QA/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.11 | |
| IL_4LNT_040 | 1/QA/1052:1056, 1/QA/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_67621.5 | |
| IL_4LNT_041 | 1/QA/1057:1058, 1/QA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_06437.11 | |
| IL_4LNT_042 | 1/QA/1060:1061, 1/QA/1195:1197 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.11 | |
| IL_4LNT_043 | 1/QA/1061:1063, 1/QA/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_01312.13 | |
| IL_4LNT_044 | 1/QA/1123:1128, 1/QA/1144:1150 | No text annotation Not in a motif group | ||
| IL_4LNT_045 | 1/QA/1128:1132, 1/QA/1142:1144 | No text annotation Not in a motif group | ||
| IL_4LNT_046 | 1/QA/1247:1253, 1/QA/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_4LNT_047 | 1/QA/1255:1258, 1/QA/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_75461.2 | |
| IL_4LNT_048 | 1/QA/1259:1260, 1/QA/1274:1276 | Not an internal loop Not in a motif group | geometric IL_4LFB_053 IL_31836.1 | |
| IL_4LNT_049 | 1/QA/1260:1262, 1/QA/1273:1274 | Minor groove platform Not in a motif group | homologous IL_4LFB_054 IL_06437.11 | |
| IL_4LNT_050 | 1/QA/1303:1308, 1/QA/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.1 | |
| IL_4LNT_051 | 1/QA/1399:1401, 1/QA/1501:1504 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.2 | |
| IL_4LNT_052 | 1/QA/1401:1404, 1/QA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_59281.1 | |
| IL_4LNT_053 | 1/QA/1405:1407, 1/QA/1494:1496 | UU cWW Not in a motif group | geometric IL_1ZZ5_002 IL_01312.13 | |
| IL_4LNT_054 | 1/QA/1407:1409, 1/QA/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_04038.4 | |
| IL_4LNT_055 | 1/QA/1412:1414, 1/QA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_01312.13 | |
| IL_4LNT_056 | 1/QA/1416:1419, 1/QA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.7 | |
| IL_4LNT_057 | 1/QA/1431:1435, 1/QA/1466:1469 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_81389.2 | |
| IL_4LNT_058 | 1/QA/1435:1437, 1/QA/1464:1466 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_01312.13 | |
| IL_4LNT_059 | 1/QA/1440:1447, 1/QA/1459:1461 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_09768.1 | |
| IL_4LNT_060 | 1/RA/24:30, 1/RA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.5 | |
| IL_4LNT_061 | 1/RA/36:37, 1/RA/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_80007.16 | |
| IL_4LNT_062 | 1/RA/41:44, 1/RA/434:438 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4WF9_003 IL_87332.1 | |
| IL_4LNT_063 | 1/RA/81:85, 1/RA/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_29549.9 | |
| IL_4LNT_064 | 1/RA/183:184, 1/RA/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_04038.4 | |
| IL_4LNT_065 | 1/RA/188:194, 1/RA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.5 | |
| IL_4LNT_066 | 1/RA/239:245, 1/RA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_35110.5 | |
| IL_4LNT_067 | 1/RA/271:272, 1/RA/365:366 | No text annotation Not in a motif group | ||
| IL_4LNT_068 | 1/RA/273:273A, 1/RA/363E:364 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_13730.12 | |
| IL_4LNT_069 | 1/RA/273F:279, 1/RA/361:363 | No text annotation Not in a motif group | ||
| IL_4LNT_070 | 1/RA/280:284, 1/RA/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_08757.3 | |
| IL_4LNT_071 | 1/RA/288:290, 1/RA/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.6 | |
| IL_4LNT_072 | 1/RA/293:295, 1/RA/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_4LNT_073 | 1/RA/481:484, 1/RA/496:509 | No text annotation Not in a motif group | geometric IL_7RQB_014 IL_60992.5 | |
| IL_4LNT_074 | 1/RA/564:566, 1/RA/575:577 | No text annotation Not in a motif group | geometric IL_7RQB_015 IL_01312.13 | |
| IL_4LNT_075 | 1/RA/606:609A, 1/RA/618A:622 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_56467.6 | |
| IL_4LNT_076 | 1/RA/672:674, 1/RA/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_01312.13 | |
| IL_4LNT_077 | 1/RA/674:678, 1/RA/799:806 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_4WF9_021 IL_17470.5 | |
| IL_4LNT_078 | 1/RA/697:698, 1/RA/763:765 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_80007.16 | |
| IL_4LNT_079 | 1/RA/702:703, 1/RA/728:730 | Single bulged G Not in a motif group | geometric IL_7RQB_020 IL_59137.10 | |
| IL_4LNT_080 | 1/RA/703:707, 1/RA/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.6 | |
| IL_4LNT_081 | 1/RA/738:741, 1/RA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7A0S_019 IL_95485.6 | |
| IL_4LNT_082 | 1/RA/775:777, 1/RA/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.5 | |
| IL_4LNT_083 | 1/RA/837:838, 1/RA/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_04038.4 | |
| IL_4LNT_084 | 1/RA/844:846, 1/RA/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_01312.13 | |
| IL_4LNT_085 | 1/RA/846:850, 1/RA/928:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 IL_94165.1 | |
| IL_4LNT_086 | 1/RA/858:862, 1/RA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7RQB_027 IL_83354.1 | |
| IL_4LNT_087 | 1/RA/862:863, 1/RA/913:915 | Minor groove platform Not in a motif group | homologous IL_7RQB_028 IL_06437.11 | |
| IL_4LNT_088 | 1/RA/864:868, 1/RA/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_63596.4 | |
| IL_4LNT_089 | 1/RA/870:872, 1/RA/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 IL_67621.5 | |
| IL_4LNT_090 | 1/RA/875:879, 1/RA/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.6 | |
| IL_4LNT_091 | 1/RA/880:881, 1/RA/895:897 | No text annotation Not in a motif group | homologous IL_5J7L_275 NA | |
| IL_4LNT_092 | 1/RA/952:954, 1/RA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_01312.13 | |
| IL_4LNT_093 | 1/RA/994:996, 1/RA/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.10 | |
| IL_4LNT_094 | 1/RA/998:1002, 1/RA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_53523.5 | |
| IL_4LNT_095 | 1/RA/1004:1011, 1/RA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.6 | |
| IL_4LNT_096 | 1/RA/1011:1013, 1/RA/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.11 | |
| IL_4LNT_097 | 1/RA/1018:1024, 1/RA/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_4LNT_098 | 1/RA/1024:1030, 1/RA/1124:1140 | No text annotation Not in a motif group | homologous IL_7RQB_040 IL_55786.1 | |
| IL_4LNT_099 | 1/RA/1031:1034, 1/RA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_55456.1 | |
| IL_4LNT_100 | 1/RA/1042:1052, 1/RA/1107:1113 | No text annotation Not in a motif group | ||
| IL_4LNT_101 | 1/RA/1059:1062, 1/RA/1076:1079 | No text annotation Not in a motif group | ||
| IL_4LNT_103 | 1/RA/1196:1198, 1/RA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_67621.5 | |
| IL_4LNT_104 | 1/RA/1202:1206, 1/RA/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_4LNT_105 | 1/RA/1208:1215, 1/RA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_29549.9 | |
| IL_4LNT_106 | 1/RA/1219:1221, 1/RA/1229A:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_80007.16 | |
| IL_4LNT_107 | 1/RA/1262:1269, 1/RA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 |