Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5DFE_0011/QA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_5DFE_0041/QA/189D:189INo text annotation
Not in a motif group
homologous
HL_6CZR_075
HL_10278.1
HL_5DFE_0051/QA/200:217No text annotation
Not in a motif group
homologous
HL_6CZR_076
HL_34168.2
HL_5DFE_0061/QA/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_5DFE_0071/QA/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.1
HL_5DFE_0081/QA/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_5DFE_0101/QA/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.1
HL_5DFE_0111/QA/419:424UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_5DFE_0121/QA/458:473No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_5DFE_0131/QA/521:528No text annotation
Not in a motif group
geometric
HL_2Y9H_003
HL_16173.1
HL_5DFE_0141/QA/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_5DFE_0151/QA/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_5DFE_0161/QA/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_5DFE_0171/QA/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_5DFE_0181/QA/838:848No text annotation
Not in a motif group
homologous
HL_6CZR_089
HL_53837.1
HL_5DFE_0191/QA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_5DFE_0201/QA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_5DFE_0211/QA/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_5DFE_0221/QA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_5DFE_0241/QA/1076:1081GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_42097.1
HL_5DFE_0251/QA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_5DFE_0261/QA/1134:1140No text annotation
Not in a motif group
homologous
HL_6CZR_097
NA
HL_5DFE_0271/QA/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_5DFE_0281/QA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_5DFE_0291/QA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_5DFE_0301/QA/1356:1366No text annotation
Not in a motif group
HL_5DFE_0311/QA/1445:1457No text annotation
Not in a motif group
homologous
HL_6CZR_102
HL_49722.1
HL_5DFE_0321/QA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_5DFE_0331/QV/13:22No text annotation
Not in a motif group
homologous
HL_4TUE_033
HL_25462.2
HL_5DFE_0341/QV/31:39No text annotation
Not in a motif group
homologous
HL_6CFJ_107
NA
HL_5DFE_0351/QV/51:63No text annotation
Not in a motif group
HL_5DFE_0361/RA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_5DFE_0371/RA/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_5DFE_0381/RA/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_5DFE_0391/RA/139A:142BNo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.2
HL_5DFE_0411/RA/194:201No text annotation
Not in a motif group
homologous
HL_5J7L_139
HL_06192.2
HL_5DFE_0421/RA/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_5DFE_0431/RA/246:252No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_5DFE_0441/RA/272I:272ONo text annotation
Not in a motif group
geometric
HL_5J7L_018
HL_34168.2
HL_5DFE_0451/RA/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_5DFE_0461/RA/319:323No text annotation
Not in a motif group
homologous
HL_7RQB_011
HL_75407.1
HL_5DFE_0471/RA/327:335No text annotation
Not in a motif group
homologous
HL_7RQB_012
HL_08002.8
HL_5DFE_0481/RA/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_5DFE_0491/RA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_5DFE_0501/RA/462:467No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_42097.1
HL_5DFE_0511/RA/487:493No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_42097.1
HL_5DFE_0531/RA/566:575No text annotation
Not in a motif group
geometric
HL_7RQB_018
HL_89380.2
HL_5DFE_0541/RA/612:615No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_5DFE_0551/RA/629:634No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_42097.1
HL_5DFE_0561/RA/641:647No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_42097.1
HL_5DFE_0571/RA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_5DFE_0581/RA/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_5DFE_0591/RA/779:785No text annotation
Not in a motif group
homologous
HL_7RQB_024
HL_74322.1
HL_5DFE_0601/RA/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_5DFE_0611/RA/884:892No text annotation
Not in a motif group
homologous
HL_7RQB_026
HL_27930.1
HL_5DFE_0621/RA/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.1
HL_5DFE_0631/RA/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_5DFE_0651/RA/1091:1100No text annotation
Not in a motif group
HL_5DFE_0661/RA/1222:1227No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.1
HL_5DFE_0671/RA/1281:1289No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_5DFE_0681/RA/1324:1330No text annotation
Not in a motif group
homologous
HL_7RQB_034
HL_46680.1
HL_5DFE_0691/RA/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_5DFE_0701/RA/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_5DFE_0711/RA/1451:1459No text annotation
Not in a motif group
geometric
HL_7RQB_037
HL_32426.1
HL_5DFE_0721/RA/1492:1498No text annotation
Not in a motif group
homologous
HL_7RQB_038
HL_46680.1
HL_5DFE_0741/RA/1565:1568No text annotation
Not in a motif group
homologous
HL_5J7L_172
HL_38927.2
HL_5DFE_0751/RA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_5DFE_0761/RA/1631A:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_5DFE_0771/RA/1691:1696No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_03562.2
HL_5DFE_0781/RA/1720:1742No text annotation
Not in a motif group
homologous
HL_7RQB_043
HL_43656.2
HL_5DFE_0791/RA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_5DFE_0801/RA/1777:1787No text annotation
Not in a motif group
homologous
HL_7RQB_045
HL_43613.5
HL_5DFE_0811/RA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_5DFE_0821/RA/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.1
HL_5DFE_0831/RA/1909:1921No text annotation
Not in a motif group
homologous
HL_7RQB_048
NA
HL_5DFE_0841/RA/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_5DFE_0851/RA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_5DFE_0871/RA/2205:2219No text annotation
Not in a motif group
homologous
HL_7RQB_052
HL_98426.1
HL_5DFE_0881/RA/2248:2256No text annotation
Not in a motif group
homologous
HL_4WF9_049
HL_53171.2
HL_5DFE_0891/RA/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_5DFE_0901/RA/2303:2313No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_5DFE_0911/RA/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_5DFE_0921/RA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_5DFE_0931/RA/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.1
HL_5DFE_0941/RA/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_5DFE_0951/RA/2471:2479No text annotation
Not in a motif group
homologous
HL_7RQB_060
HL_06192.2
HL_5DFE_0961/RA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_88526.2
HL_5DFE_0971/RA/2551:2557No text annotation
Not in a motif group
homologous
HL_5J7L_195
NA
HL_5DFE_0981/RA/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_5DFE_0991/RA/2658:2663GNRA
Not in a motif group
geometric
HL_5J7L_197
HL_42097.1
HL_5DFE_1001/RA/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_5DFE_1011/RA/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_5DFE_1031/RA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_5DFE_1041/RA/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.1
HL_5DFE_1051/RB/38:44No text annotation
Not in a motif group
geometric
HL_7RQB_070
HL_87939.1
HL_5DFE_1061/RB/86:91No text annotation
Not in a motif group
homologous
HL_7RQB_071
HL_42097.1
HL_5DFE_1071/XA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_5DFE_1091/XA/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_42097.1
HL_5DFE_1101/XA/189D:189INo text annotation
Not in a motif group
homologous
HL_6CZR_075
HL_10278.1
HL_5DFE_1111/XA/201:216No text annotation
Not in a motif group
HL_5DFE_1121/XA/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_5DFE_1131/XA/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.1
HL_5DFE_1141/XA/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_5DFE_1151/XA/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_5DFE_1161/XA/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.1
HL_5DFE_1171/XA/419:424UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_5DFE_1181/XA/458:473No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_5DFE_1191/XA/521:528No text annotation
Not in a motif group
homologous
HL_4LFB_013
NA
HL_5DFE_1201/XA/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_5DFE_1211/XA/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_5DFE_1221/XA/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_5DFE_1231/XA/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_5DFE_1241/XA/838:848No text annotation
Not in a motif group
homologous
HL_6CZR_089
HL_53837.1
HL_5DFE_1251/XA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_5DFE_1261/XA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_5DFE_1271/XA/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_5DFE_1281/XA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_5DFE_1301/XA/1076:1081GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_42097.1
HL_5DFE_1311/XA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_5DFE_1321/XA/1134:1140No text annotation
Not in a motif group
homologous
HL_6CZR_097
NA
HL_5DFE_1331/XA/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_5DFE_1341/XA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_5DFE_1351/XA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_5DFE_1361/XA/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_5DFE_1371/XA/1445:1457No text annotation
Not in a motif group
homologous
HL_6CZR_102
HL_49722.1
HL_5DFE_1381/XA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_5DFE_1391/XV/13:22No text annotation
Not in a motif group
homologous
HL_1QF6_001
NA
HL_5DFE_1401/XV/31:39No text annotation
Not in a motif group
homologous
HL_6CFJ_107
NA
HL_5DFE_1411/XV/52:62No text annotation
Not in a motif group
homologous
HL_4WSM_226
HL_22031.1
HL_5DFE_1421/YA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_5DFE_1431/YA/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_5DFE_1441/YA/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_5DFE_1451/YA/139A:142BNo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.2
HL_5DFE_1471/YA/194:201No text annotation
Not in a motif group
homologous
HL_7RQB_006
HL_06192.2
HL_5DFE_1481/YA/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_5DFE_1491/YA/246:252No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_5DFE_1501/YA/272I:272ONo text annotation
Not in a motif group
geometric
HL_5J7L_018
HL_34168.2
HL_5DFE_1511/YA/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_5DFE_1521/YA/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_5DFE_1531/YA/327:335No text annotation
Not in a motif group
homologous
HL_7RQB_012
HL_08002.8
HL_5DFE_1541/YA/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_5DFE_1551/YA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_5DFE_1561/YA/462:467No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_42097.1
HL_5DFE_1571/YA/487:493No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_42097.1
HL_5DFE_1591/YA/566:575No text annotation
Not in a motif group
geometric
HL_7RQB_018
HL_89380.2
HL_5DFE_1601/YA/612:615No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_5DFE_1611/YA/629:634No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_42097.1
HL_5DFE_1621/YA/641:647No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_42097.1
HL_5DFE_1631/YA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_5DFE_1641/YA/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_5DFE_1651/YA/779:785No text annotation
Not in a motif group
homologous
HL_5J7L_156
HL_74322.1
HL_5DFE_1661/YA/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_5DFE_1671/YA/884:892No text annotation
Not in a motif group
homologous
HL_7RQB_026
HL_27930.1
HL_5DFE_1681/YA/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.1
HL_5DFE_1691/YA/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_5DFE_1711/YA/1091:1100No text annotation
Not in a motif group
HL_5DFE_1721/YA/1222:1227No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.1
HL_5DFE_1731/YA/1281:1289No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_5DFE_1741/YA/1324:1330No text annotation
Not in a motif group
homologous
HL_7RQB_034
HL_46680.1
HL_5DFE_1751/YA/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_5DFE_1761/YA/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_5DFE_1771/YA/1451:1459No text annotation
Not in a motif group
geometric
HL_7RQB_037
HL_32426.1
HL_5DFE_1781/YA/1492:1498No text annotation
Not in a motif group
homologous
HL_7RQB_038
HL_46680.1
HL_5DFE_1801/YA/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_5DFE_1811/YA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_5DFE_1821/YA/1631A:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_5DFE_1831/YA/1691:1696No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_03562.2
HL_5DFE_1841/YA/1720:1742No text annotation
Not in a motif group
homologous
HL_7RQB_043
HL_43656.2
HL_5DFE_1851/YA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_5DFE_1861/YA/1777:1787No text annotation
Not in a motif group
homologous
HL_7RQB_045
HL_43613.5
HL_5DFE_1871/YA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_5DFE_1881/YA/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.1
HL_5DFE_1891/YA/1909:1921No text annotation
Not in a motif group
homologous
HL_7RQB_048
NA
HL_5DFE_1901/YA/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_5DFE_1911/YA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_5DFE_1931/YA/2205:2219No text annotation
Not in a motif group
homologous
HL_7RQB_052
HL_98426.1
HL_5DFE_1941/YA/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_5DFE_1951/YA/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_5DFE_1961/YA/2303:2313No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_5DFE_1971/YA/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_5DFE_1981/YA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_5DFE_1991/YA/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.1
HL_5DFE_2001/YA/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_5DFE_2011/YA/2471:2479No text annotation
Not in a motif group
homologous
HL_7RQB_060
HL_06192.2
HL_5DFE_2021/YA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_88526.2
HL_5DFE_2031/YA/2551:2557No text annotation
Not in a motif group
homologous
HL_5J7L_195
NA
HL_5DFE_2041/YA/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_5DFE_2051/YA/2658:2663GNRA
Not in a motif group
geometric
HL_5J7L_197
HL_42097.1
HL_5DFE_2061/YA/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_5DFE_2071/YA/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_5DFE_2091/YA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_5DFE_2101/YA/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.1
HL_5DFE_2111/YB/38:44No text annotation
Not in a motif group
geometric
HL_7RQB_070
HL_87939.1
HL_5DFE_2121/YB/86:91No text annotation
Not in a motif group
homologous
HL_7RQB_071
HL_42097.1

Problematic loops

#loop idProblemSequence
HL_5DFE_002No text annotation
HL_5DFE_003GNRA
HL_5DFE_009No text annotation
HL_5DFE_023No text annotation
HL_5DFE_040No text annotation
HL_5DFE_052No text annotation
HL_5DFE_064No text annotation
HL_5DFE_073No text annotation
HL_5DFE_086No text annotation
HL_5DFE_102No text annotation
HL_5DFE_108No text annotation
HL_5DFE_129No text annotation
HL_5DFE_146No text annotation
HL_5DFE_158No text annotation
HL_5DFE_170No text annotation
HL_5DFE_179No text annotation
HL_5DFE_192No text annotation
HL_5DFE_208No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5DFE_0011/QA/30:32,
1/QA/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.2
IL_5DFE_0021/QA/44:45,
1/QA/396:398
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.2
IL_5DFE_0031/QA/47:52,
1/QA/359:361
No text annotation
Not in a motif group
geometric
IL_4LFB_003
IL_11178.1
IL_5DFE_0041/QA/54:56,
1/QA/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_5DFE_0051/QA/63:66,
1/QA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_5DFE_0061/QA/67:69,
1/QA/100:102
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_95997.1
IL_5DFE_0071/QA/129A:131,
1/QA/231:232
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_5DFE_0081/QA/132:136,
1/QA/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_5DFE_0091/QA/148:153,
1/QA/168:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4LFB_009
IL_39753.1
IL_5DFE_0101/QA/186:188,
1/QA/189M:191
No text annotation
Not in a motif group
homologous
IL_4LFB_010
IL_95997.1
IL_5DFE_0111/QA/242:247,
1/QA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_5DFE_0121/QA/249:252,
1/QA/274:275
No text annotation
Not in a motif group
homologous
IL_5J7L_015
IL_48100.2
IL_5DFE_0131/QA/292:293,
1/QA/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_5DFE_0141/QA/367:369,
1/QA/392:393
Single bulged U
Not in a motif group
geometric
IL_4LFB_014
IL_83039.13
IL_5DFE_0151/QA/371:375,
1/QA/389:390
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_75255.1
IL_5DFE_0161/QA/375:376,
1/QA/387:389
Single bulged G
Not in a motif group
geometric
IL_4LFB_016
IL_00225.2
IL_5DFE_0171/QA/409:416,
1/QA/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_5DFE_0181/QA/446:450,
1/QA/483:488
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4LFB_018
IL_88269.3
IL_5DFE_0191/QA/450:455,
1/QA/476:483
No text annotation
Not in a motif group
geometric
IL_4LFB_019
IL_11882.1
IL_5DFE_0201/QA/504:511,
1/QA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_5DFE_0211/QA/515:521,
1/QA/528:536
No text annotation
Not in a motif group
homologous
IL_4LFB_021
NA
IL_5DFE_0221/QA/569:575,
1/QA/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_5DFE_0231/QA/580:584,
1/QA/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_5DFE_0241/QA/594:596,
1/QA/644:645
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.1
IL_5DFE_0251/QA/597:598,
1/QA/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.6
IL_5DFE_0261/QA/605:612,
1/QA/628:633
No text annotation
Not in a motif group
homologous
IL_4LFB_026
IL_78349.1
IL_5DFE_0271/QA/654:655,
1/QA/751:754
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4LFB_027
IL_50694.2
IL_5DFE_0281/QA/657:658,
1/QA/747:749
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.1
IL_5DFE_0291/QA/662:666,
1/QA/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4LFB_029
IL_71110.1
IL_5DFE_0301/QA/673:678,
1/QA/712:717
No text annotation
Not in a motif group
geometric
IL_4LFB_030
IL_04668.1
IL_5DFE_0311/QA/683:688,
1/QA/699:707
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_5DFE_0321/QA/774:778,
1/QA/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_5DFE_0331/QA/779:783,
1/QA/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_033
IL_17136.1
IL_5DFE_0341/QA/887:894,
1/QA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_5DFE_0351/QA/922:923,
1/QA/1393:1395
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.2
IL_5DFE_0361/QA/925:927,
1/QA/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.2
IL_5DFE_0371/QA/933:935,
1/QA/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_4LFB_037
IL_47078.1
IL_5DFE_0381/QA/953:954,
1/QA/1226:1228
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_5DFE_0391/QA/993:997,
1/QA/1044:1045
Minor groove platform
Not in a motif group
geometric
IL_6CZR_151
IL_47078.1
IL_5DFE_0401/QA/1048:1050,
1/QA/1208:1209
Single bulged U
Not in a motif group
geometric
IL_4LFB_042
IL_83039.13
IL_5DFE_0411/QA/1050:1052,
1/QA/1206:1208
No text annotation
Not in a motif group
geometric
IL_4WF9_042
IL_95997.1
IL_5DFE_0421/QA/1052:1056,
1/QA/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_5DFE_0431/QA/1057:1058,
1/QA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_4LFB_045
IL_93353.1
IL_5DFE_0441/QA/1060:1061,
1/QA/1195:1197
Single bulged U
Not in a motif group
geometric
IL_4LFB_046
IL_83039.13
IL_5DFE_0451/QA/1061:1063,
1/QA/1193:1195
No text annotation
Not in a motif group
homologous
IL_4LFB_047
IL_95997.1
IL_5DFE_0461/QA/1124:1127,
1/QA/1145:1149
Minor groove platform
Not in a motif group
homologous
IL_6CZR_158
IL_58103.6
IL_5DFE_0471/QA/1129:1132,
1/QA/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_4LFB_049
IL_15052.1
IL_5DFE_0481/QA/1247:1253,
1/QA/1284:1290
No text annotation
Not in a motif group
homologous
IL_4LFB_051
IL_09129.1
IL_5DFE_0491/QA/1255:1258,
1/QA/1277:1282
No text annotation
Not in a motif group
homologous
IL_6CZR_161
IL_75461.4
IL_5DFE_0501/QA/1259:1260,
1/QA/1274:1276
Not an internal loop
Not in a motif group
homologous
IL_4LFB_053
IL_93353.1
IL_5DFE_0511/QA/1260:1262,
1/QA/1273:1274
Minor groove platform
Not in a motif group
geometric
IL_4LFB_054
IL_93353.1
IL_5DFE_0521/QA/1303:1308,
1/QA/1329:1334
No text annotation
Not in a motif group
homologous
IL_4LFB_055
IL_19954.2
IL_5DFE_0531/QA/1399:1401,
1/QA/1501:1504
No text annotation
Not in a motif group
geometric
IL_4V88_463
IL_36143.3
IL_5DFE_0541/QA/1401:1405,
1/QA/1496:1501
No text annotation
Not in a motif group
homologous
IL_4LFB_057
NA
IL_5DFE_0551/QA/1405:1409,
1/QA/1491:1496
No text annotation
Not in a motif group
IL_5DFE_0561/QA/1412:1415,
1/QA/1485:1488
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_6CZR_168
IL_67743.1
IL_5DFE_0571/QA/1416:1419,
1/QA/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_5DFE_0581/QA/1431:1435,
1/QA/1466:1469
UAA/GAN variation
Not in a motif group
homologous
IL_4LFB_062
IL_07235.1
IL_5DFE_0591/QA/1435:1437,
1/QA/1464:1466
No text annotation
Not in a motif group
geometric
IL_4LFB_063
IL_95997.1
IL_5DFE_0601/QA/1440:1443,
1/QA/1459:1461
Isolated basepair with bulged bases
Not in a motif group
homologous
IL_6CZR_172
IL_92788.2
IL_5DFE_0611/RA/24:30,
1/RA/510:516
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_7RQB_001
IL_66414.6
IL_5DFE_0621/RA/36:37,
1/RA/442:444
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.2
IL_5DFE_0631/RA/42:43,
1/RA/434:436
Minor groove platform
Not in a motif group
homologous
IL_7RQB_003
IL_42622.2
IL_5DFE_0641/RA/81:85,
1/RA/97:105
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_5DFE_0651/RA/183:184,
1/RA/212:214
Single stack bend
Not in a motif group
homologous
IL_7RQB_005
IL_76488.2
IL_5DFE_0661/RA/188:194,
1/RA/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7RQB_006
IL_04346.7
IL_5DFE_0671/RA/239:245,
1/RA/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_5DFE_0681/RA/273E:273F,
1/RA/363F:364
Major groove platform
Not in a motif group
homologous
IL_7RQB_009
IL_27635.1
IL_5DFE_0691/RA/273K:279,
1/RA/361:363A
No text annotation
Not in a motif group
IL_5DFE_0701/RA/280:284,
1/RA/357:360
tSH-tHW
Not in a motif group
homologous
IL_7RQB_011
IL_04059.1
IL_5DFE_0711/RA/288:290,
1/RA/350:353
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_012
IL_38958.7
IL_5DFE_0721/RA/293:295,
1/RA/343:347
No text annotation
Not in a motif group
homologous
IL_7RQB_013
IL_69440.1
IL_5DFE_0731/RA/481:484,
1/RA/496:509
No text annotation
Not in a motif group
homologous
IL_7RQB_014
IL_60992.6
IL_5DFE_0741/RA/564:566,
1/RA/575:577
No text annotation
Not in a motif group
homologous
IL_7RQB_015
IL_95997.1
IL_5DFE_0751/RA/606:610,
1/RA/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_7RQB_016
IL_17136.1
IL_5DFE_0761/RA/672:674,
1/RA/806:808
No text annotation
Not in a motif group
homologous
IL_7RQB_017
IL_95997.1
IL_5DFE_0771/RA/674:678,
1/RA/799:806
No text annotation
Not in a motif group
geometric
IL_7RQB_018
IL_17470.6
IL_5DFE_0781/RA/697:698,
1/RA/763:765
Single bulged A
Not in a motif group
homologous
IL_7RQB_019
IL_37497.2
IL_5DFE_0791/RA/702:703,
1/RA/728:730
Single bulged G
Not in a motif group
homologous
IL_7RQB_020
IL_00225.2
IL_5DFE_0801/RA/703:707,
1/RA/724:728
Triple sheared
Not in a motif group
geometric
IL_7RQB_021
IL_56467.8
IL_5DFE_0811/RA/738:741,
1/RA/756:758
Major groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_022
IL_05564.2
IL_5DFE_0821/RA/775:777,
1/RA/787:791
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_023
IL_90991.6