5HCR Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5HCR_001 | 1/1A/57:66 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_5HCR_002 | 1/1A/85:93 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_5HCR_003 | 1/1A/120:125 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
| HL_5HCR_004 | 1/1A/135:140 | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_5HCR_006 | 1/1A/182:189 | No text annotation Not in a motif group | homologous HL_7RQB_006 HL_06192.2 | |
| HL_5HCR_007 | 1/1A/213:218 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_5HCR_008 | 1/1A/234:240 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_5HCR_009 | 1/1A/268:274 | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.2 | |
| HL_5HCR_010 | 1/1A/328:335 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_5HCR_011 | 1/1A/342:346 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_75407.1 | |
| HL_5HCR_012 | 1/1A/350:358 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
| HL_5HCR_013 | 1/1A/408:418 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_5HCR_014 | 1/1A/436:443 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_5HCR_015 | 1/1A/487:492 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_5HCR_016 | 1/1A/512:517 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_5HCR_018 | 1/1A/588:597 | No text annotation Not in a motif group | homologous HL_7RQB_018 HL_89380.2 | |
| HL_5HCR_019 | 1/1A/634:640 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
| HL_5HCR_020 | 1/1A/653:658 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_5HCR_021 | 1/1A/665:671 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
| HL_5HCR_022 | 1/1A/758:765 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_5HCR_023 | 1/1A/790:799 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_5HCR_024 | 1/1A/825:831 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_74322.1 | |
| HL_5HCR_025 | 1/1A/872:877 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_5HCR_026 | 1/1A/930:937 | No text annotation Not in a motif group | homologous HL_7RQB_026 HL_27930.1 | |
| HL_5HCR_027 | 1/1A/999:1006 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_5HCR_028 | 1/1A/1023:1030 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_5HCR_029 | 1/1A/1216:1222 | No text annotation Not in a motif group | homologous HL_7RQB_031 HL_94651.3 | |
| HL_5HCR_030 | 1/1A/1267:1272 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_5HCR_031 | 1/1A/1326:1334 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_5HCR_032 | 1/1A/1369:1375 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_5HCR_033 | 1/1A/1408:1413 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_5HCR_034 | 1/1A/1434:1443 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_5HCR_035 | 1/1A/1498:1505 | No text annotation Not in a motif group | homologous HL_7RQB_037 HL_32426.1 | |
| HL_5HCR_036 | 1/1A/1537:1543 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_5HCR_037 | 1/1A/1611:1614 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_5HCR_038 | 1/1A/1657:1664 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_5HCR_039 | 1/1A/1676:1681 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_5HCR_040 | 1/1A/1737:1742 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_03562.2 | |
| HL_5HCR_041 | 1/1A/1764:1770 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_5HCR_042 | 1/1A/1782:1786 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_5HCR_043 | 1/1A/1807:1817 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_5HCR_044 | 1/1A/1836:1841 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_5HCR_045 | 1/1A/1894:1899 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_5HCR_046 | 1/1A/1931:1941 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_5HCR_047 | 1/1A/1970:1978 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_5HCR_048 | 1/1A/2048:2057 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_5HCR_050 | 1/1A/2225:2230 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_98426.1 | |
| HL_5HCR_051 | 1/1A/2259:2267 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_5HCR_052 | 1/1A/2275:2287 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_5HCR_053 | 1/1A/2314:2324 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_5HCR_054 | 1/1A/2335:2342 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_5HCR_055 | 1/1A/2366:2373 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_5HCR_056 | 1/1A/2385:2390 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
| HL_5HCR_057 | 1/1A/2415:2424 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_5HCR_058 | 1/1A/2482:2490 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_06192.2 | |
| HL_5HCR_059 | 1/1A/2539:2546 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_5HCR_060 | 1/1A/2562:2568 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_5HCR_061 | 1/1A/2605:2610 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_5HCR_062 | 1/1A/2669:2674 | No text annotation Not in a motif group | geometric HL_7RQB_064 HL_42097.1 | |
| HL_5HCR_063 | 1/1A/2712:2717 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_5HCR_064 | 1/1A/2757:2771 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_5HCR_066 | 1/1A/2828:2836 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_5HCR_067 | 1/1A/2865:2870 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_5HCR_068 | 1/1B/38:44 | No text annotation Not in a motif group | homologous HL_7RQB_070 HL_87939.1 | |
| HL_5HCR_069 | 1/1B/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_42097.1 | |
| HL_5HCR_070 | 1/1a/13:23 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_5HCR_071 | 1/1a/143:169 | No text annotation Not in a motif group | ||
| HL_5HCR_072 | 1/1a/187:192 | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_10278.1 | |
| HL_5HCR_074 | 1/1a/255:263 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_5HCR_075 | 1/1a/292:297 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_5HCR_076 | 1/1a/316:329 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_5HCR_078 | 1/1a/375:380 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_5HCR_079 | 1/1a/415:420 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_5HCR_080 | 1/1a/453:459 | No text annotation Not in a motif group | homologous HL_6CZR_083 HL_43656.2 | |
| HL_5HCR_081 | 1/1a/506:511 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_5HCR_082 | 1/1a/601:607 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_5HCR_083 | 1/1a/673:682 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_5HCR_084 | 1/1a/710:715 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_5HCR_085 | 1/1a/770:780 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_5HCR_086 | 1/1a/822:826 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_53837.1 | |
| HL_5HCR_087 | 1/1a/840:845 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_5HCR_088 | 1/1a/875:880 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_42097.1 | |
| HL_5HCR_089 | 1/1a/941:950 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_5HCR_090 | 1/1a/991:996 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_5HCR_091 | 1/1a/1059:1064 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_5HCR_092 | 1/1a/1072:1079 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_5HCR_093 | 1/1a/1117:1123 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_5HCR_094 | 1/1a/1148:1153 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_5HCR_095 | 1/1a/1247:1252 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_5HCR_096 | 1/1a/1296:1305 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_5HCR_097 | 1/1a/1338:1349 | No text annotation Not in a motif group | ||
| HL_5HCR_098 | 1/1a/1430:1435 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
| HL_5HCR_099 | 1/1a/1493:1498 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_5HCR_100 | 1/1x/13:22 | No text annotation Not in a motif group | homologous HL_1QF6_001 NA | |
| HL_5HCR_101 | 1/1x/31:39 | No text annotation Not in a motif group | homologous HL_6CFJ_107 NA | |
| HL_5HCR_102 | 1/1x/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA | |
| HL_5HCR_103 | 1/2A/57:66 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_5HCR_104 | 1/2A/85:93 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_5HCR_105 | 1/2A/120:125 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
| HL_5HCR_106 | 1/2A/135:140 | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_5HCR_108 | 1/2A/182:189 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_06192.2 | |
| HL_5HCR_109 | 1/2A/213:218 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_5HCR_110 | 1/2A/234:240 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_5HCR_111 | 1/2A/269:272 | No text annotation Not in a motif group | homologous HL_7RQB_009 HL_89098.1 | |
| HL_5HCR_112 | 1/2A/328:335 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_5HCR_113 | 1/2A/342:346 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_75407.1 | |
| HL_5HCR_114 | 1/2A/350:358 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
| HL_5HCR_115 | 1/2A/408:418 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_5HCR_116 | 1/2A/436:443 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_5HCR_117 | 1/2A/487:492 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_5HCR_118 | 1/2A/512:517 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
| HL_5HCR_120 | 1/2A/588:597 | No text annotation Not in a motif group | homologous HL_7RQB_018 HL_89380.2 | |
| HL_5HCR_121 | 1/2A/634:640 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
| HL_5HCR_122 | 1/2A/653:658 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_5HCR_123 | 1/2A/665:671 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.1 | |
| HL_5HCR_125 | 1/2A/758:765 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_5HCR_126 | 1/2A/790:799 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_5HCR_127 | 1/2A/825:831 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_74322.1 | |
| HL_5HCR_128 | 1/2A/872:877 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_64365.1 | |
| HL_5HCR_129 | 1/2A/930:937 | No text annotation Not in a motif group | homologous HL_7RQB_026 HL_27930.1 | |
| HL_5HCR_130 | 1/2A/999:1006 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_5HCR_131 | 1/2A/1023:1030 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_5HCR_135 | 1/2A/1267:1272 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_5HCR_136 | 1/2A/1326:1334 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_5HCR_137 | 1/2A/1369:1375 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_5HCR_138 | 1/2A/1408:1413 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_5HCR_139 | 1/2A/1434:1443 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_5HCR_140 | 1/2A/1498:1505 | No text annotation Not in a motif group | homologous HL_7RQB_037 HL_32426.1 | |
| HL_5HCR_141 | 1/2A/1537:1543 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_5HCR_143 | 1/2A/1611:1614 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_5HCR_144 | 1/2A/1657:1664 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_5HCR_145 | 1/2A/1676:1681 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_5HCR_146 | 1/2A/1737:1742 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_03562.2 | |
| HL_5HCR_147 | 1/2A/1764:1770 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_5HCR_148 | 1/2A/1782:1786 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_5HCR_149 | 1/2A/1807:1817 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_5HCR_150 | 1/2A/1836:1841 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_5HCR_151 | 1/2A/1894:1899 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_5HCR_152 | 1/2A/1931:1941 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_5HCR_153 | 1/2A/1970:1978 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_5HCR_154 | 1/2A/2048:2057 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_5HCR_156 | 1/2A/2225:2230 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_98426.1 | |
| HL_5HCR_157 | 1/2A/2259:2267 | No text annotation Not in a motif group | homologous HL_4WF9_049 HL_53171.2 | |
| HL_5HCR_158 | 1/2A/2275:2287 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_5HCR_159 | 1/2A/2313:2325 | No text annotation Not in a motif group | ||
| HL_5HCR_160 | 1/2A/2335:2342 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_5HCR_161 | 1/2A/2366:2373 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_5HCR_162 | 1/2A/2385:2390 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
| HL_5HCR_163 | 1/2A/2415:2424 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_5HCR_164 | 1/2A/2482:2490 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_06192.2 | |
| HL_5HCR_165 | 1/2A/2539:2546 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_5HCR_166 | 1/2A/2562:2568 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_5HCR_167 | 1/2A/2605:2610 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_5HCR_168 | 1/2A/2669:2674 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_5HCR_169 | 1/2A/2712:2717 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_5HCR_170 | 1/2A/2757:2771 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_5HCR_172 | 1/2A/2828:2836 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_5HCR_173 | 1/2A/2865:2870 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_5HCR_174 | 1/2B/38:44 | No text annotation Not in a motif group | geometric HL_1MJI_002 HL_87939.1 | |
| HL_5HCR_175 | 1/2B/86:91 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_5HCR_176 | 1/2a/13:23 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_5HCR_178 | 1/2a/153:158 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_5HCR_179 | 1/2a/187:192 | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_5HCR_180 | 1/2a/207:213 | No text annotation Not in a motif group | homologous HL_6CZR_076 HL_34168.2 | |
| HL_5HCR_181 | 1/2a/255:263 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_5HCR_182 | 1/2a/292:297 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_5HCR_183 | 1/2a/316:329 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_5HCR_184 | 1/2a/338:343 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_5HCR_185 | 1/2a/375:380 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_5HCR_186 | 1/2a/415:420 | No text annotation Not in a motif group | ||
| HL_5HCR_187 | 1/2a/453:459 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_5HCR_188 | 1/2a/506:511 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_5HCR_189 | 1/2a/601:607 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_5HCR_190 | 1/2a/673:682 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_5HCR_191 | 1/2a/710:715 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_5HCR_192 | 1/2a/770:780 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_5HCR_193 | 1/2a/822:826 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_53837.1 | |
| HL_5HCR_194 | 1/2a/840:845 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_5HCR_195 | 1/2a/875:880 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_42097.1 | |
| HL_5HCR_196 | 1/2a/941:950 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_5HCR_197 | 1/2a/991:996 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_5HCR_198 | 1/2a/1059:1064 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_5HCR_199 | 1/2a/1072:1079 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_5HCR_200 | 1/2a/1117:1123 | No text annotation Not in a motif group | ||
| HL_5HCR_201 | 1/2a/1148:1153 | GNRA Not in a motif group | homologous HL_6CZR_098 HL_42097.1 | |
| HL_5HCR_202 | 1/2a/1247:1252 | No text annotation Not in a motif group | homologous HL_6CZR_099 NA | |
| HL_5HCR_203 | 1/2a/1296:1305 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_5HCR_204 | 1/2a/1338:1349 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_5HCR_205 | 1/2a/1430:1435 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
| HL_5HCR_206 | 1/2a/1493:1498 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_5HCR_207 | 1/2x/13:22 | No text annotation Not in a motif group | homologous HL_5B63_003 HL_25462.2 | |
| HL_5HCR_208 | 1/2x/31:39 | No text annotation Not in a motif group | homologous HL_6CFJ_107 NA | |
| HL_5HCR_209 | 1/2x/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5HCR_005 | No text annotation | ||
| HL_5HCR_017 | No text annotation | ||
| HL_5HCR_049 | No text annotation | ||
| HL_5HCR_065 | No text annotation | ||
| HL_5HCR_073 | No text annotation | ||
| HL_5HCR_077 | No text annotation | ||
| HL_5HCR_107 | No text annotation | ||
| HL_5HCR_119 | No text annotation | ||
| HL_5HCR_124 | No text annotation | ||
| HL_5HCR_132 | No text annotation | ||
| HL_5HCR_133 | No text annotation | ||
| HL_5HCR_134 | No text annotation | ||
| HL_5HCR_142 | No text annotation | ||
| HL_5HCR_155 | No text annotation | ||
| HL_5HCR_171 | No text annotation | ||
| HL_5HCR_177 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5HCR_001 | 1/1A/23:29, 1/1A/534:540 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_5HCR_002 | 1/1A/35:36, 1/1A/467:469 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_5HCR_003 | 1/1A/41:43, 1/1A/459:462 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_18471.2 | |
| IL_5HCR_004 | 1/1A/79:83, 1/1A/95:102 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_5HCR_005 | 1/1A/171:172, 1/1A/200:202 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_5HCR_006 | 1/1A/176:182, 1/1A/189:196 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
| IL_5HCR_007 | 1/1A/227:233, 1/1A/241:246 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_5HCR_008 | 1/1A/290:291, 1/1A/391:393 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_27635.1 | |
| IL_5HCR_010 | 1/1A/303:307, 1/1A/380:383 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
| IL_5HCR_011 | 1/1A/311:313, 1/1A/373:376 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_5HCR_012 | 1/1A/316:318, 1/1A/366:370 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_5HCR_013 | 1/1A/506:509, 1/1A/520:533 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
| IL_5HCR_014 | 1/1A/586:588, 1/1A/597:599 | No text annotation Not in a motif group | geometric IL_7RQB_015 IL_95997.1 | |
| IL_5HCR_015 | 1/1A/628:632, 1/1A/642:646 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_5HCR_016 | 1/1A/718:720, 1/1A/852:854 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
| IL_5HCR_017 | 1/1A/720:724, 1/1A/845:852 | No text annotation Not in a motif group | geometric IL_7RQB_018 IL_17470.6 | |
| IL_5HCR_018 | 1/1A/743:744, 1/1A/809:811 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_37497.2 | |
| IL_5HCR_019 | 1/1A/748:749, 1/1A/774:776 | Single bulged G Not in a motif group | geometric IL_7RQB_020 IL_00225.2 | |
| IL_5HCR_020 | 1/1A/749:753, 1/1A/770:774 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_5HCR_021 | 1/1A/784:787, 1/1A/802:804 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_5HCR_022 | 1/1A/821:823, 1/1A/833:837 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 IL_90991.6 | |
| IL_5HCR_023 | 1/1A/883:884, 1/1A/984:986 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_5HCR_024 | 1/1A/890:892, 1/1A/975:978 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 IL_52767.2 | |
| IL_5HCR_025 | 1/1A/892:896, 1/1A/972:975 | No text annotation Not in a motif group | geometric IL_7RQB_026 IL_94165.1 | |
| IL_5HCR_026 | 1/1A/903:908, 1/1A/960:965 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_5HCR_027 | 1/1A/908:909, 1/1A/958:960 | Minor groove platform Not in a motif group | homologous IL_7RQB_028 IL_42622.2 | |
| IL_5HCR_028 | 1/1A/910:914, 1/1A/954:957 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_5HCR_029 | 1/1A/916:918, 1/1A/950:952 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 IL_52767.2 | |
| IL_5HCR_030 | 1/1A/921:923, 1/1A/944:947 | Minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_031 IL_46796.1 | |
| IL_5HCR_031 | 1/1A/923:925, 1/1A/943:944 | Minor groove platform Not in a motif group | geometric IL_7RQB_032 IL_93353.1 | |
| IL_5HCR_032 | 1/1A/926:927, 1/1A/940:942 | Single bulged A Not in a motif group | homologous IL_7RQB_033 IL_37497.2 | |
| IL_5HCR_033 | 1/1A/996:998, 1/1A/1007:1009 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_5HCR_034 | 1/1A/1039:1041, 1/1A/1204:1205 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_5HCR_035 | 1/1A/1043:1047, 1/1A/1198:1202 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_5HCR_036 | 1/1A/1049:1056, 1/1A/1195:1196 | SSU/LSU pseudoknot Not in a motif group | homologous IL_7RQB_037 IL_15861.7 | |
| IL_5HCR_037 | 1/1A/1056:1058, 1/1A/1194:1195 | Single bulged U Not in a motif group | geometric IL_7RQB_038 IL_83039.13 | |
| IL_5HCR_038 | 1/1A/1063:1069, 1/1A/1184:1189 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_5HCR_039 | 1/1A/1069:1075, 1/1A/1169:1184 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_5HCR_040 | 1/1A/1076:1079, 1/1A/1166:1168 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_82068.2 | |
| IL_5HCR_041 | 1/1A/1088:1097, 1/1A/1152:1157 | No text annotation Not in a motif group | ||
| IL_5HCR_043 | 1/1A/1240:1242, 1/1A/1292:1295 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.2 | |
| IL_5HCR_044 | 1/1A/1246:1250, 1/1A/1285:1288 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_5HCR_045 | 1/1A/1252:1259, 1/1A/1279:1283 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_5HCR_046 | 1/1A/1263:1265, 1/1A/1274:1275 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_5HCR_047 | 1/1A/1307:1314, 1/1A/2032:2038 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_5HCR_048 | 1/1A/1355:1358, 1/1A/1648:1649 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_5HCR_049 | 1/1A/1364:1368, 1/1A/1376:1378 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_5HCR_050 | 1/1A/1396:1400, 1/1A/1421:1425 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_5HCR_051 | 1/1A/1402:1406, 1/1A/1415:1419 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_5HCR_052 | 1/1A/1460:1461, 1/1A/1628:1632 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_5HCR_053 | 1/1A/1462:1466, 1/1A/1623:1627 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
| IL_5HCR_054 | 1/1A/1478:1480, 1/1A/1603:1606 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_5HCR_055 | 1/1A/1482:1485, 1/1A/1597:1601 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_5HCR_056 | 1/1A/1494:1496, 1/1A/1508:1509 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
| IL_5HCR_057 | 1/1A/1497:1498, 1/1A/1505:1507 | Single bulged A Not in a motif group | geometric IL_7RQB_059 IL_37497.2 | |
| IL_5HCR_058 | 1/1A/1515:1519, 1/1A/1565:1568 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_5HCR_059 | 1/1A/1527:1528, 1/1A/1551:1557 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_5HCR_060 | 1/1A/1534:1536, 1/1A/1544:1545 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_5HCR_061 | 1/1A/1571:1575, 1/1A/1586:1592 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_02656.1 | |
| IL_5HCR_062 | 1/1A/1697:1702, 1/1A/2025:2027 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_5HCR_063 | 1/1A/1709:1711, 1/1A/2016:2018 | Isolated tWW turn Not in a motif group | homologous IL_7A0S_060 IL_54997.7 | |
| IL_5HCR_064 | 1/1A/1712:1715, 1/1A/2014:2015 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
| IL_5HCR_065 | 1/1A/1715:1720, 1/1A/2011:2014 | Intercalated tWH Not in a motif group | homologous IL_7RQB_067 IL_82842.2 | |
| IL_5HCR_066 | 1/1A/1732:1737, 1/1A/1742:1748 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_5HCR_067 | 1/1A/1800:1801, 1/1A/2001:2003 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_5HCR_068 | 1/1A/1828:1834, 1/1A/1843:1851 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_5HCR_069 | 1/1A/1867:1870, 1/1A/1923:1924 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_5HCR_070 | 1/1A/1871:1872, 1/1A/1919:1922 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 IL_16396.2 | |
| IL_5HCR_071 | 1/1A/1876:1879, 1/1A/1914:1915 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_5HCR_072 | 1/1A/1881:1885, 1/1A/1908:1912 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_5HCR_073 | 1/1A/1886:1890, 1/1A/1903:1907 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_5HCR_074 | 1/1A/1954:1955, 1/1A/1985:1988 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 IL_59677.2 | |
| IL_5HCR_075 | 1/1A/1955:1966, 1/1A/1982:1985 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_5HCR_076 | 1/1A/2071:2073, 1/1A/2628:2629 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_5HCR_077 | 1/1A/2075:2078, 1/1A/2622:2626 | No text annotation Not in a motif group | ||
| IL_5HCR_078 | 1/1A/2088:2090, 1/1A/2453:2454 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_5HCR_079 | 1/1A/2091:2092, 1/1A/2449:2452 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_5HCR_080 | 1/1A/2102:2104, 1/1A/2247:2250 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_5HCR_081 | 1/1A/2106:2108, 1/1A/2243:2245 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_5HCR_082 | 1/1A/2308:2310, 1/1A/2328:2332 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_088 IL_38958.7 | |
| IL_5HCR_083 | 1/1A/2361:2364, 1/1A/2375:2378 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_5HCR_084 | 1/1A/2412:2414, 1/1A/2425:2426 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
| IL_5HCR_085 | 1/1A/2464:2465, 1/1A/2509:2511 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.2 | |
| IL_5HCR_086 | 1/1A/2465:2466, 1/1A/2507:2509 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_5HCR_087 | 1/1A/2468:2470, 1/1A/2504:2505 | Major groove platform Not in a motif group | homologous IL_4WF9_091 IL_27635.1 | |
| IL_5HCR_088 | 1/1A/2470:2472, 1/1A/2500:2504 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_92788.2 | |
| IL_5HCR_089 | 1/1A/2477:2481, 1/1A/2491:2495 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_5HCR_090 | 1/1A/2518:2519, 1/1A/2591:2593 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_5HCR_091 | 1/1A/2521:2523, 1/1A/2585:2589 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 IL_90933.2 | |
| IL_5HCR_092 | 1/1A/2523:2524, 1/1A/2582:2585 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_098 IL_71530.2 | |
| IL_5HCR_093 | 1/1A/2533:2534, 1/1A/2551:2554 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
| IL_5HCR_094 | 1/1A/2599:2601, 1/1A/2615:2617 | No text annotation Not in a motif group | geometric IL_5C5W_002 IL_95997.1 | |
| IL_5HCR_095 | 1/1A/2602:2603, 1/1A/2612:2614 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_5HCR_096 | 1/1A/2647:2651, 1/1A/2786:2794 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_5HCR_097 | 1/1A/2663:2669, 1/1A/2674:2679 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7RQB_103 IL_16458.1 | |
| IL_5HCR_098 | 1/1A/2691:2695, 1/1A/2737:2739 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_5HCR_099 | 1/1A/2698:2702, 1/1A/2730:2734 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_5HCR_100 | 1/1A/2706:2707, 1/1A/2722:2726 | No text annotation Not in a motif group | ||
| IL_5HCR_101 | 1/1A/2749:2754, 1/1A/2774:2779 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_5HCR_102 | 1/1A/2847:2848, 1/1A/2887:2889 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_5HCR_103 | 1/1A/2852:2855, 1/1A/2879:2883 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_5HCR_104 | 1/1A/2856:2861, 1/1A/2874:2878 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_5HCR_105 | 1/1B/17:18, 1/1B/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_5HCR_107 | 1/1B/23:28, 1/1B/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_5HCR_108 | 1/1B/30:32, 1/1B/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_5HCR_109 | 1/1B/34:38, 1/1B/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_5HCR_110 | 1/1B/71:79, 1/1B/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_5HCR_111 | 1/1a/31:33, 1/1a/536:537 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_5HCR_112 | 1/1a/45:46, 1/1a/392:394 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_5HCR_113 | 1/1a/48:53, 1/1a/355:357 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_5HCR_114 | 1/1a/55:57, 1/1a/352:353 | Minor groove platform Not in a motif group | homologous IL_6CZR_116 IL_93353.1 | |
| IL_5HCR_115 | 1/1a/64:67, 1/1a/97:98 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_5HCR_116 | 1/1a/68:70, 1/1a/94:96 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_5HCR_118 | 1/1a/123:126, 1/1a/227:228 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_5HCR_119 | 1/1a/127:131, 1/1a/223:226 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_5HCR_121 | 1/1a/181:184, 1/1a/195:198 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_001 IL_30621.2 | |
| IL_5HCR_122 | 1/1a/238:243, 1/1a/273:280 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_5HCR_123 | 1/1a/245:248, 1/1a/270:271 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_5HCR_124 | 1/1a/288:289, 1/1a/300:304 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_5HCR_125 | 1/1a/363:365, 1/1a/388:389 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.13 | |
| IL_5HCR_126 | 1/1a/367:371, 1/1a/385:386 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_5HCR_127 | 1/1a/371:372, 1/1a/383:385 | Single bulged G Not in a motif group | geometric IL_4LFB_016 IL_00225.2 | |
| IL_5HCR_128 | 1/1a/405:412, 1/1a/423:429 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_5HCR_129 | 1/1a/441:445, 1/1a/468:473 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4LFB_018 IL_88269.3 | |
| IL_5HCR_130 | 1/1a/445:451, 1/1a/461:468 | No text annotation Not in a motif group | homologous IL_6CZR_131 IL_30149.1 | |
| IL_5HCR_131 | 1/1a/488:495, 1/1a/524:525 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_5HCR_132 | 1/1a/499:505, 1/1a/512:520 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_5HCR_133 | 1/1a/553:559, 1/1a/858:859 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_5HCR_134 | 1/1a/564:568, 1/1a/741:745 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_135 IL_17136.1 | |
| IL_5HCR_136 | 1/1a/578:580, 1/1a/628:629 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_5HCR_137 | 1/1a/581:582, 1/1a/624:627 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_5HCR_138 | 1/1a/589:596, 1/1a/612:617 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_5HCR_139 | 1/1a/638:639, 1/1a/735:738 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_5HCR_140 | 1/1a/641:642, 1/1a/731:733 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_5HCR_141 | 1/1a/646:650, 1/1a/724:727 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_5HCR_142 | 1/1a/657:662, 1/1a/696:701 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_5HCR_143 | 1/1a/667:672, 1/1a/683:691 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_5HCR_144 | 1/1a/758:762, 1/1a/788:789 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_5HCR_145 | 1/1a/763:767, 1/1a/783:787 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_5HCR_146 | 1/1a/865:872, 1/1a/883:888 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_5HCR_147 | 1/1a/900:901, 1/1a/1376:1378 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_5HCR_148 | 1/1a/903:905, 1/1a/1373:1374 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_5HCR_149 | 1/1a/911:914, 1/1a/1362:1367 | No text annotation Not in a motif group | homologous IL_6CZR_149 IL_93211.1 | |
| IL_5HCR_150 | 1/1a/931:932, 1/1a/1208:1210 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_5HCR_151 | 1/1a/971:975, 1/1a/1027:1028 | Minor groove platform Not in a motif group | geometric IL_6CZR_151 IL_47078.1 | |
| IL_5HCR_154 | 1/1a/1031:1033, 1/1a/1190:1191 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_5HCR_155 | 1/1a/1035:1039, 1/1a/1186:1188 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_5HCR_156 | 1/1a/1040:1041, 1/1a/1181:1185 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_5HCR_157 | 1/1a/1043:1044, 1/1a/1177:1179 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.13 | |
| IL_5HCR_158 | 1/1a/1044:1046, 1/1a/1175:1177 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_5HCR_159 | 1/1a/1107:1110, 1/1a/1128:1132 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.6 | |
| IL_5HCR_160 | 1/1a/1112:1115, 1/1a/1125:1126 | Minor groove platform Not in a motif group | homologous IL_4LFB_049 IL_15052.1 | |
| IL_5HCR_161 | 1/1a/1229:1235, 1/1a/1266:1272 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_5HCR_162 | 1/1a/1237:1240, 1/1a/1259:1264 | No text annotation Not in a motif group | homologous IL_6CZR_161 IL_75461.4 | |
| IL_5HCR_163 | 1/1a/1241:1242, 1/1a/1256:1258 | Not an internal loop Not in a motif group | geometric IL_4LFB_053 IL_93353.1 | |
| IL_5HCR_164 | 1/1a/1242:1244, 1/1a/1255:1256 | Minor groove platform Not in a motif group | homologous IL_4LFB_054 IL_93353.1 | |
| IL_5HCR_165 | 1/1a/1285:1290, 1/1a/1311:1316 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_5HCR_166 | 1/1a/1382:1384, 1/1a/1479:1482 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
| IL_5HCR_167 | 1/1a/1384:1387, 1/1a/1475:1479 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_5HCR_168 | 1/1a/1388:1390, 1/1a/1472:1474 | No text annotation Not in a motif group | geometric IL_5VCI_002 IL_95997.1 | |
| IL_5HCR_169 | 1/1a/1390:1392, 1/1a/1469:1472 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_5HCR_170 | 1/1a/1395:1397, 1/1a/1464:1466 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_5HCR_171 | 1/1a/1399:1402, 1/1a/1459:1462 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_5HCR_172 | 1/1a/1414:1418, 1/1a/1444:1447 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.1 | |
| IL_5HCR_173 | 1/1a/1418:1420, 1/1a/1442:1444 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_95997.1 | |
| IL_5HCR_174 | 1/1a/1423:1428, 1/1a/1437:1439 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.2 | |
| IL_5HCR_175 | 1/2A/23:29, 1/2A/534:540 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_5HCR_176 | 1/2A/35:36, 1/2A/467:469 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_5HCR_177 | 1/2A/41:43, 1/2A/459:462 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_18471.2 | |
| IL_5HCR_178 | 1/2A/79:83, 1/2A/95:102 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_5HCR_179 | 1/2A/171:172, 1/2A/200:202 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_5HCR_180 | 1/2A/176:182, 1/2A/189:196 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_5HCR_181 | 1/2A/227:233, 1/2A/241:246 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_5HCR_182 | 1/2A/268:269, 1/2A/272:274 | Single bulged U Not in a motif group | geometric IL_7RQB_008 IL_83039.13 | |
| IL_5HCR_183 | 1/2A/290:291, 1/2A/391:393 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_27635.1 | |
| IL_5HCR_184 | 1/2A/296:302, 1/2A/384:386 | No text annotation Not in a motif group | ||
| IL_5HCR_185 | 1/2A/303:307, 1/2A/380:383 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
| IL_5HCR_186 | 1/2A/311:313, 1/2A/373:376 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_5HCR_187 | 1/2A/316:318, 1/2A/366:370 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_5HCR_188 | 1/2A/506:509, 1/2A/520:533 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
| IL_5HCR_189 | 1/2A/586:588, 1/2A/597:599 | No text annotation Not in a motif group | geometric IL_7RQB_015 IL_95997.1 | |
| IL_5HCR_190 | 1/2A/621:623, 1/2A/702:704 | No text annotation Not in a motif group | geometric IL_1Z7F_002 IL_95997.1 | |
| IL_5HCR_191 | 1/2A/628:632, 1/2A/642:646 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_5HCR_192 | 1/2A/718:720, 1/2A/852:854 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
| IL_5HCR_193 | 1/2A/720:724, 1/2A/845:852 | No text annotation Not in a motif group | geometric IL_7RQB_018 IL_17470.6 | |
| IL_5HCR_194 | 1/2A/743:744, 1/2A/809:811 | Single bulged A Not in a motif group | homologous IL_7RQB_019 IL_37497.2 | |
| IL_5HCR_195 | 1/2A/748:749, 1/2A/774:776 | Single bulged G Not in a motif group | homologous IL_7RQB_020 IL_00225.2 | |
| IL_5HCR_196 | 1/2A/749:753, 1/2A/770:774 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.8 | |
| IL_5HCR_197 | 1/2A/784:787, 1/2A/802:804 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_5HCR_198 | 1/2A/821:823, 1/2A/833:837 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 IL_90991.6 | |
| IL_5HCR_199 | 1/2A/883:884, 1/2A/984:986 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_5HCR_200 | 1/2A/890:892, 1/2A/975:978 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
| IL_5HCR_201 | 1/2A/892:896, 1/2A/972:975 | No text annotation Not in a motif group | homologous IL_7RQB_026 IL_94165.1 | |
| IL_5HCR_202 | 1/2A/904:908, 1/2A/960:964 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7RQB_027 IL_38862.1 | |
| IL_5HCR_203 | 1/2A/908:909, 1/2A/958:960 | Minor groove platform Not in a motif group | homologous IL_7RQB_028 IL_42622.2 | |
| IL_5HCR_204 | 1/2A/910:914, 1/2A/954:957 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_5HCR_205 | 1/2A/916:918, 1/2A/950:952 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 IL_52767.2 | |
| IL_5HCR_206 | 1/2A/921:926, 1/2A/942:947 | No text annotation Not in a motif group | ||
| IL_5HCR_207 | 1/2A/926:927, 1/2A/940:942 | Single bulged A Not in a motif group | homologous IL_7RQB_033 IL_37497.2 | |
| IL_5HCR_208 | 1/2A/996:998, 1/2A/1007:1009 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_5HCR_209 | 1/2A/1039:1041, 1/2A/1204:1205 | Single bulged C Not in a motif group | homologous IL_7A0S_032 IL_61258.12 | |
| IL_5HCR_210 | 1/2A/1043:1047, 1/2A/1198:1202 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_5HCR_211 | 1/2A/1049:1056, 1/2A/1195:1196 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.7 | |
| IL_5HCR_212 | 1/2A/1056:1058, 1/2A/1194:1195 | Single bulged U Not in a motif group | homologous IL_7RQB_038 IL_83039.13 | |
| IL_5HCR_213 | 1/2A/1063:1069, 1/2A/1184:1189 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_5HCR_214 | 1/2A/1069:1075, 1/2A/1169:1184 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_5HCR_215 | 1/2A/1076:1079, 1/2A/1166:1168 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_5HCR_216 | 1/2A/1086:1088, 1/2A/1157:1159 | No text annotation Not in a motif group | geometric IL_6IA2_004 IL_95997.1 | |
| IL_5HCR_220 | 1/2A/1240:1242, 1/2A/1292:1295 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.2 | |
| IL_5HCR_221 | 1/2A/1246:1250, 1/2A/1285:1288 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_5HCR_222 | 1/2A/1252:1259, 1/2A/1279:1283 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_5HCR_223 | 1/2A/1263:1265, 1/2A/1274:1275 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_5HCR_224 | 1/2A/1307:1314, 1/2A/2032:2038 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_5HCR_225 | 1/2A/1355:1358, 1/2A/1648:1649 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_5HCR_226 | 1/2A/1364:1368, 1/2A/1376:1378 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_5HCR_227 | 1/2A/1396:1400, 1/2A/1421:1425 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_5HCR_228 | 1/2A/1402:1406, 1/2A/1415:1419 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_5HCR_230 | 1/2A/1460:1461, 1/2A/1628:1632 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_5HCR_231 | 1/2A/1462:1466, 1/2A/1623:1627 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
| IL_5HCR_232 | 1/2A/1478:1480, 1/2A/1603:1606 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_5HCR_233 | 1/2A/1482:1485, 1/2A/1597:1601 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_5HCR_234 | 1/2A/1494:1496, 1/2A/1508:1509 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
| IL_5HCR_235 | 1/2A/1497:1498, 1/2A/1505:1507 | Single bulged A Not in a motif group | geometric IL_7RQB_059 IL_37497.2 | |
| IL_5HCR_236 | 1/2A/1515:1519, 1/2A/1565:1568 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_5HCR_237 | 1/2A/1527:1528, 1/2A/1551:1557 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_5HCR_238 | 1/2A/1534:1536, 1/2A/1544:1545 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_5HCR_239 | 1/2A/1571:1575, 1/2A/1586:1592 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_02656.1 | |
| IL_5HCR_240 | 1/2A/1697:1702, 1/2A/2025:2027 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_5HCR_241 | 1/2A/1709:1711, 1/2A/2016:2018 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_5HCR_242 | 1/2A/1712:1715, 1/2A/2014:2015 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
| IL_5HCR_243 | 1/2A/1715:1720, 1/2A/2011:2014 | Intercalated tWH Not in a motif group | homologous IL_7RQB_067 IL_82842.2 | |
| IL_5HCR_244 | 1/2A/1732:1737, 1/2A/1742:1748 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_5HCR_245 | 1/2A/1800:1801, 1/2A/2001:2003 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_5HCR_246 | 1/2A/1828:1834, 1/2A/1843:1851 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_5HCR_247 | 1/2A/1867:1870, 1/2A/1923:1924 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_5HCR_248 | 1/2A/1871:1872, 1/2A/1919:1922 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 IL_16396.2 | |
| IL_5HCR_249 | 1/2A/1876:1879, 1/2A/1914:1915 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_5HCR_250 | 1/2A/1881:1885, 1/2A/1908:1912 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_5HCR_251 | 1/2A/1886:1890, 1/2A/1903:1907 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_5HCR_252 | 1/2A/1954:1955, 1/2A/1985:1988 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 IL_59677.2 | |
| IL_5HCR_253 | 1/2A/1955:1966, 1/2A/1982:1985 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_5HCR_254 | 1/2A/2071:2073, 1/2A/2628:2629 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_5HCR_255 | 1/2A/2075:2078, 1/2A/2622:2626 | No text annotation Not in a motif group | homologous IL_7RQB_079 IL_01206.1 | |
| IL_5HCR_256 | 1/2A/2088:2090, 1/2A/2453:2454 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_5HCR_257 | 1/2A/2091:2092, 1/2A/2449:2452 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_5HCR_258 | 1/2A/2102:2104, 1/2A/2247:2250 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_5HCR_259 | 1/2A/2106:2108, 1/2A/2243:2245 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_5HCR_260 | 1/2A/2121:2123, 1/2A/2208:2210 | No text annotation Not in a motif group | geometric IL_2R8S_001 IL_95997.1 | |
| IL_5HCR_261 | 1/2A/2308:2311, 1/2A/2327:2332 | No text annotation Not in a motif group | ||
| IL_5HCR_262 | 1/2A/2361:2364, 1/2A/2375:2378 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_5HCR_263 | 1/2A/2412:2414, 1/2A/2425:2426 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
| IL_5HCR_264 | 1/2A/2464:2465, 1/2A/2509:2511 | Single stack bend Not in a motif group | geometric IL_7A0S_083 IL_76488.2 | |
| IL_5HCR_265 | 1/2A/2465:2466, 1/2A/2507:2509 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_5HCR_266 | 1/2A/2468:2470, 1/2A/2504:2505 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_5HCR_267 | 1/2A/2470:2472, 1/2A/2500:2504 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_5HCR_268 | 1/2A/2477:2481, 1/2A/2491:2495 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_5HCR_269 | 1/2A/2518:2519, 1/2A/2591:2593 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_5HCR_270 | 1/2A/2521:2523, 1/2A/2585:2589 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 IL_90933.2 | |
| IL_5HCR_271 | 1/2A/2523:2524, 1/2A/2582:2585 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_098 IL_71530.2 | |
| IL_5HCR_272 | 1/2A/2533:2534, 1/2A/2551:2554 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
| IL_5HCR_273 | 1/2A/2599:2601, 1/2A/2615:2617 | No text annotation Not in a motif group | geometric IL_5C5W_002 IL_95997.1 | |
| IL_5HCR_274 | 1/2A/2602:2603, 1/2A/2612:2614 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_5HCR_275 | 1/2A/2647:2651, 1/2A/2786:2794 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_5HCR_276 | 1/2A/2663:2669, 1/2A/2674:2679 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 IL_16458.1 | |
| IL_5HCR_277 | 1/2A/2691:2695, 1/2A/2737:2739 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_5HCR_278 | 1/2A/2698:2702, 1/2A/2730:2734 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_5HCR_279 | 1/2A/2706:2707, 1/2A/2722:2726 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
| IL_5HCR_280 | 1/2A/2749:2754, 1/2A/2774:2779 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_5HCR_281 | 1/2A/2847:2848, 1/2A/2887:2889 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_5HCR_282 | 1/2A/2852:2855, 1/2A/2879:2883 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_5HCR_283 | 1/2A/2856:2861, 1/2A/2874:2878 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_5HCR_284 | 1/2B/17:18, 1/2B/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_5HCR_285 | 1/2B/23:28, 1/2B/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_5HCR_287 | 1/2B/30:31, 1/2B/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V9F_103 IL_09061.6 | |
| IL_5HCR_288 | 1/2B/34:38, 1/2B/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
| IL_5HCR_289 | 1/2B/71:79, 1/2B/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_5HCR_290 | 1/2a/31:33, 1/2a/536:537 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_5HCR_291 | 1/2a/45:46, 1/2a/392:394 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_5HCR_292 | 1/2a/48:53, 1/2a/355:357 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_5HCR_293 | 1/2a/55:57, 1/2a/352:353 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_5HCR_294 | 1/2a/64:67, 1/2a/97:98 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_76389.1 | |
| IL_5HCR_295 | 1/2a/68:70, 1/2a/94:96 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_5HCR_296 | 1/2a/123:126, 1/2a/227:228 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_5HCR_297 | 1/2a/127:131, 1/2a/223:226 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_5HCR_298 | 1/2a/143:148, 1/2a/163:169 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_5HCR_300 | 1/2a/181:183, 1/2a/196:198 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_5HCR_301 | 1/2a/238:243, 1/2a/273:280 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_5HCR_302 | 1/2a/245:248, 1/2a/270:271 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_5HCR_303 | 1/2a/288:289, 1/2a/300:304 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_5HCR_304 | 1/2a/367:371, 1/2a/385:386 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_5HCR_305 | 1/2a/371:372, 1/2a/383:385 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_5HCR_306 | 1/2a/405:412, 1/2a/423:429 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_5HCR_307 | 1/2a/441:445, 1/2a/468:473 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_5HCR_308 | 1/2a/445:450, 1/2a/462:468 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
| IL_5HCR_309 | 1/2a/488:495, 1/2a/524:525 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_5HCR_310 | 1/2a/499:505, 1/2a/512:520 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_5HCR_311 | 1/2a/553:559, 1/2a/858:859 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_5HCR_312 | 1/2a/564:568, 1/2a/741:745 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_5HCR_313 | 1/2a/578:580, 1/2a/628:629 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_5HCR_314 | 1/2a/581:582, 1/2a/624:627 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_5HCR_315 | 1/2a/589:596, 1/2a/612:617 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_5HCR_316 | 1/2a/638:639, 1/2a/735:738 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_5HCR_317 | 1/2a/641:642, 1/2a/731:733 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_5HCR_318 | 1/2a/646:650, 1/2a/724:727 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_5HCR_319 | 1/2a/657:662, 1/2a/696:701 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_5HCR_320 | 1/2a/667:672, 1/2a/683:691 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_5HCR_321 | 1/2a/758:762, 1/2a/788:789 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_5HCR_322 | 1/2a/763:767, 1/2a/783:787 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.1 | |
| IL_5HCR_323 | 1/2a/865:872, 1/2a/883:888 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_5HCR_324 | 1/2a/900:901, 1/2a/1376:1378 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_5HCR_325 | 1/2a/903:905, 1/2a/1373:1374 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_5HCR_326 | 1/2a/911:914, 1/2a/1362:1367 | No text annotation Not in a motif group | homologous IL_6CZR_149 IL_93211.1 | |
| IL_5HCR_327 | 1/2a/931:932, 1/2a/1208:1210 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_5HCR_328 | 1/2a/971:975, 1/2a/1027:1028 | Minor groove platform Not in a motif group | geometric IL_4LFB_039 IL_47078.1 | |
| IL_5HCR_330 | 1/2a/1031:1033, 1/2a/1190:1191 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_5HCR_331 | 1/2a/1035:1039, 1/2a/1186:1188 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_5HCR_332 | 1/2a/1040:1041, 1/2a/1181:1185 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_5HCR_333 | 1/2a/1043:1044, 1/2a/1177:1179 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.13 | |
| IL_5HCR_334 | 1/2a/1044:1046, 1/2a/1175:1177 | No text annotation Not in a motif group | homologous IL_4LFB_047 IL_95997.1 | |
| IL_5HCR_335 | 1/2a/1107:1110, 1/2a/1128:1132 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.6 | |
| IL_5HCR_336 | 1/2a/1112:1115, 1/2a/1125:1126 | Minor groove platform Not in a motif group | homologous IL_4LFB_049 IL_15052.1 | |
| IL_5HCR_337 | 1/2a/1229:1235, 1/2a/1266:1272 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_5HCR_338 | 1/2a/1237:1240, 1/2a/1259:1264 | No text annotation Not in a motif group | ||
| IL_5HCR_339 | 1/2a/1241:1244, 1/2a/1255:1258 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.9 | |
| IL_5HCR_340 | 1/2a/1285:1290, 1/2a/1311:1316 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_5HCR_341 | 1/2a/1382:1384, 1/2a/1479:1482 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
| IL_5HCR_342 | 1/2a/1384:1387, 1/2a/1475:1479 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_5HCR_343 | 1/2a/1388:1390, 1/2a/1472:1474 | No text annotation Not in a motif group | geometric IL_5MWI_007 IL_95997.1 | |
| IL_5HCR_344 | 1/2a/1390:1392, 1/2a/1469:1472 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_5HCR_345 | 1/2a/1395:1398, 1/2a/1463:1466 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_6CZR_168 IL_67743.1 | |
| IL_5HCR_346 | 1/2a/1399:1402, 1/2a/1459:1462 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_5HCR_347 | 1/2a/1414:1418, 1/2a/1444:1447 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.1 | |
| IL_5HCR_348 | 1/2a/1418:1420, 1/2a/1442:1444 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_5HCR_349 | 1/2a/1423:1428, 1/2a/1437:1439 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5HCR_009 | No text annotation | ||
| IL_5HCR_042 | Isolated cWH basepair | ||
| IL_5HCR_106 | Not an internal loop | ||
| IL_5HCR_117 | No text annotation | ||
| IL_5HCR_120 | Isolated cWH basepair | ||
| IL_5HCR_135 | No text annotation | ||
| IL_5HCR_152 | No text annotation | ||
| IL_5HCR_153 | No text annotation | ||
| IL_5HCR_217 | Kink-turn | ||
| IL_5HCR_218 | No text annotation | ||
| IL_5HCR_219 | Single stack bend | ||
| IL_5HCR_229 | No text annotation | ||
| IL_5HCR_286 | Isolated cWH basepair | ||
| IL_5HCR_299 | No text annotation | ||
| IL_5HCR_329 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5HCR_001 | 1/1A/729:735, 1/1A/819:821, 1/1A/837:840 | No text annotation Not in a motif group | ||
| J3_5HCR_002 | 1/1A/744:746, 1/1A/778:782, 1/1A/806:809 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_5HCR_003 | 1/1A/1343:1348, 1/1A/1670:1672, 1/1A/1685:1688 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_5HCR_004 | 1/1A/1351:1354, 1/1A/1650:1656, 1/1A/1665:1667 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_5HCR_005 | 1/1A/2112:2114, 1/1A/2217:2221, 1/1A/2234:2239 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_5HCR_006 | 1/1A/2306:2308, 1/1A/2332:2334, 1/1A/2343:2348 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
| J3_5HCR_007 | 1/1A/2528:2531, 1/1A/2556:2558, 1/1A/2572:2578 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_5HCR_008 | 1/1A/2801:2803, 1/1A/2815:2820, 1/1A/2898:2902 | No text annotation Not in a motif group | homologous J3_7RQB_013 NA | |
| J3_5HCR_009 | 1/1a/810:813, 1/1a/835:839, 1/1a/846:852 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_5HCR_010 | 1/1a/914:917, 1/1a/1326:1332, 1/1a/1355:1362 | No text annotation Not in a motif group | ||
| J3_5HCR_011 | 1/1a/921:924, 1/1a/1217:1219, 1/1a/1319:1322 | No text annotation Not in a motif group | ||
| J3_5HCR_012 | 1/1a/933:940, 1/1a/951:962, 1/1a/1203:1207 | No text annotation Not in a motif group | ||
| J3_5HCR_013 | 1/1a/968:971, 1/1a/1028:1030, 1/1a/1192:1197 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_5HCR_014 | 1/1a/1046:1051, 1/1a/1090:1096, 1/1a/1169:1175 | No text annotation Not in a motif group | ||
| J3_5HCR_015 | 1/1a/1099:1101, 1/1a/1138:1144, 1/1a/1157:1166 | No text annotation Not in a motif group | ||
| J3_5HCR_016 | 1/1a/1219:1223, 1/1a/1278:1285, 1/1a/1316:1319 | No text annotation Not in a motif group | ||
| J3_5HCR_017 | 1/2A/729:735, 1/2A/819:821, 1/2A/837:840 | No text annotation Not in a motif group | ||
| J3_5HCR_018 | 1/2A/744:746, 1/2A/778:782, 1/2A/806:809 | No text annotation Not in a motif group | ||
| J3_5HCR_020 | 1/2A/1343:1348, 1/2A/1670:1672, 1/2A/1685:1688 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_5HCR_021 | 1/2A/1351:1354, 1/2A/1650:1656, 1/2A/1665:1667 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_5HCR_022 | 1/2A/2112:2114, 1/2A/2217:2221, 1/2A/2234:2239 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_5HCR_023 | 1/2A/2306:2308, 1/2A/2332:2334, 1/2A/2343:2348 | No text annotation Not in a motif group | ||
| J3_5HCR_024 | 1/2A/2528:2531, 1/2A/2556:2558, 1/2A/2572:2578 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_5HCR_025 | 1/2a/810:813, 1/2a/835:839, 1/2a/846:852 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_5HCR_026 | 1/2a/914:917, 1/2a/1326:1332, 1/2a/1355:1362 | No text annotation Not in a motif group | ||
| J3_5HCR_027 | 1/2a/921:924, 1/2a/1217:1219, 1/2a/1319:1322 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_5HCR_028 | 1/2a/933:940, 1/2a/951:962, 1/2a/1203:1207 | No text annotation Not in a motif group | ||
| J3_5HCR_029 | 1/2a/968:971, 1/2a/1028:1030, 1/2a/1192:1197 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_5HCR_030 | 1/2a/1046:1051, 1/2a/1090:1096, 1/2a/1169:1175 | No text annotation Not in a motif group | ||
| J3_5HCR_031 | 1/2a/1099:1101, 1/2a/1138:1144, 1/2a/1157:1166 | No text annotation Not in a motif group | ||
| J3_5HCR_032 | 1/2a/1219:1223, 1/2a/1278:1285, 1/2a/1316:1319 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5HCR_019 | No text annotation |
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