5MMI Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5MMI_001 | 1/A/66:73 | No text annotation Not in a motif group | homologous HL_4WF9_001 HL_86769.3 | |
| HL_5MMI_002 | 1/A/86:94 | No text annotation Not in a motif group | homologous HL_4WF9_002 HL_96598.1 | |
| HL_5MMI_003 | 1/A/121:126 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_75407.1 | |
| HL_5MMI_004 | 1/A/142:152 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_5MMI_005 | 1/A/179:186 | No text annotation Not in a motif group | homologous HL_4WF9_006 HL_06192.2 | |
| HL_5MMI_006 | 1/A/210:215 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_5MMI_007 | 1/A/231:237 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_5MMI_008 | 1/A/260:267 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_5MMI_009 | 1/A/315:321 | No text annotation Not in a motif group | geometric HL_5T16_002 HL_65572.2 | |
| HL_5MMI_010 | 1/A/328:332 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_5MMI_011 | 1/A/336:344 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_5MMI_012 | 1/A/393:405 | No text annotation Not in a motif group | ||
| HL_5MMI_013 | 1/A/422:429 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.1 | |
| HL_5MMI_014 | 1/A/474:479 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_5MMI_015 | 1/A/499:504 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_5MMI_017 | 1/A/576:585 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_150 HL_89380.2 | |
| HL_5MMI_018 | 1/A/621:629 | No text annotation Not in a motif group | ||
| HL_5MMI_019 | 1/A/641:646 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_5MMI_020 | 1/A/653:659 | No text annotation Not in a motif group | ||
| HL_5MMI_021 | 1/A/723:730 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_5MMI_022 | 1/A/755:764 | No text annotation Not in a motif group | homologous HL_7A0S_022 HL_39334.6 | |
| HL_5MMI_023 | 1/A/790:796 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_74322.1 | |
| HL_5MMI_024 | 1/A/837:842 | No text annotation Not in a motif group | homologous HL_5J7L_157 HL_64365.1 | |
| HL_5MMI_026 | 1/A/943:953 | No text annotation Not in a motif group | ||
| HL_5MMI_027 | 1/A/983:990 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_5MMI_028 | 1/A/1006:1013 | No text annotation Not in a motif group | homologous HL_4WF9_028 HL_64430.2 | |
| HL_5MMI_029 | 1/A/1092:1102 | No text annotation Not in a motif group | homologous HL_5J7L_161 HL_07145.1 | |
| HL_5MMI_030 | 1/A/1120:1127 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.2 | |
| HL_5MMI_031 | 1/A/1195:1202 | No text annotation Not in a motif group | geometric HL_6UFG_001 HL_78614.1 | |
| HL_5MMI_032 | 1/A/1243:1248 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_5MMI_033 | 1/A/1302:1310 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_032 HL_89380.2 | |
| HL_5MMI_034 | 1/A/1345:1351 | No text annotation Not in a motif group | homologous HL_4WF9_033 HL_46680.1 | |
| HL_5MMI_035 | 1/A/1384:1389 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_5MMI_036 | 1/A/1410:1419 | No text annotation Not in a motif group | homologous HL_4WF9_035 HL_69023.2 | |
| HL_5MMI_037 | 1/A/1470:1481 | No text annotation Not in a motif group | ||
| HL_5MMI_039 | 1/A/1529:1537 | No text annotation Not in a motif group | ||
| HL_5MMI_040 | 1/A/1567:1572 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_03562.2 | |
| HL_5MMI_041 | 1/A/1599:1602 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_5MMI_042 | 1/A/1648:1655 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_5MMI_043 | 1/A/1666:1672 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
| HL_5MMI_044 | 1/A/1727:1732 | UNCG Not in a motif group | homologous HL_5J7L_175 HL_03562.2 | |
| HL_5MMI_046 | 1/A/1762:1766 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.2 | |
| HL_5MMI_047 | 1/A/1787:1797 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.5 | |
| HL_5MMI_048 | 1/A/1816:1821 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_5MMI_049 | 1/A/1880:1885 | No text annotation Not in a motif group | homologous HL_4WF9_045 NA | |
| HL_5MMI_050 | 1/A/1924:1934 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_5MMI_051 | 1/A/1963:1971 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_5MMI_052 | 1/A/2041:2050 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_5MMI_053 | 1/A/2157:2162 | No text annotation Not in a motif group | homologous HL_5J7L_184 NA | |
| HL_5MMI_054 | 1/A/2222:2233 | No text annotation Not in a motif group | ||
| HL_5MMI_055 | 1/A/2266:2272 | No text annotation Not in a motif group | ||
| HL_5MMI_056 | 1/A/2281:2293 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_5MMI_057 | 1/A/2320:2330 | No text annotation Not in a motif group | homologous HL_5J7L_188 HL_11805.3 | |
| HL_5MMI_058 | 1/A/2341:2348 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_5MMI_059 | 1/A/2372:2379 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_5MMI_060 | 1/A/2391:2396 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_5MMI_061 | 1/A/2421:2430 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_5MMI_062 | 1/A/2488:2496 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_5MMI_063 | 1/A/2544:2553 | tRNA anticodon loop Not in a motif group | geometric HL_3W3S_002 HL_53597.2 | |
| HL_5MMI_064 | 1/A/2568:2574 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_5MMI_065 | 1/A/2611:2616 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_5MMI_066 | 1/A/2675:2680 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_5MMI_067 | 1/A/2718:2723 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_5MMI_068 | 1/A/2763:2777 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_5MMI_069 | 1/B/39:45 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_5MMI_070 | 1/B/87:92 | No text annotation Not in a motif group | homologous HL_7A0S_070 HL_42097.1 | |
| HL_5MMI_071 | 1/W/15:23 | No text annotation Not in a motif group | geometric HL_5J7L_201 HL_27930.1 | |
| HL_5MMI_072 | 1/W/60:65 | No text annotation Not in a motif group | geometric HL_7RQB_020 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5MMI_016 | No text annotation | ||
| HL_5MMI_025 | No text annotation | ||
| HL_5MMI_038 | No text annotation | ||
| HL_5MMI_045 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5MMI_001 | 1/A/35:36, 1/A/454:456 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_5MMI_002 | 1/A/42:43, 1/A/446:448 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_5MMI_003 | 1/A/80:84, 1/A/96:103 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_5MMI_004 | 1/A/136:138, 1/A/156:160 | No text annotation Not in a motif group | geometric IL_6DME_003 IL_63450.2 | |
| IL_5MMI_005 | 1/A/168:169, 1/A/197:199 | Single stack bend Not in a motif group | homologous IL_5J7L_249 IL_76488.2 | |
| IL_5MMI_006 | 1/A/173:179, 1/A/186:193 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7A0S_006 IL_04346.7 | |
| IL_5MMI_007 | 1/A/223:230, 1/A/238:244 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_009 IL_04346.7 | |
| IL_5MMI_008 | 1/A/278:280, 1/A/375:379 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_5MMI_009 | 1/A/284:286, 1/A/370:371 | Single base bend Not in a motif group | geometric IL_5IBB_340 IL_92001.1 | |
| IL_5MMI_010 | 1/A/286:289, 1/A/369:370 | No text annotation Not in a motif group | ||
| IL_5MMI_011 | 1/A/292:296, 1/A/363:366 | UAA/GAN Not in a motif group | geometric IL_7RQB_060 IL_07235.1 | |
| IL_5MMI_012 | 1/A/298:300, 1/A/359:361 | No text annotation Not in a motif group | geometric IL_4V9F_017 IL_95997.1 | |
| IL_5MMI_013 | 1/A/303:305, 1/A/352:356 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_5MMI_014 | 1/A/312:314, 1/A/322:324 | No text annotation Not in a motif group | geometric IL_5TBW_068 IL_95997.1 | |
| IL_5MMI_015 | 1/A/493:496, 1/A/507:520 | No text annotation Not in a motif group | homologous IL_5J7L_255 IL_60992.6 | |
| IL_5MMI_016 | 1/A/547:550, 1/A/564:567 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_5MMI_017 | 1/A/574:576, 1/A/585:587 | No text annotation Not in a motif group | homologous IL_7A0S_011 IL_95997.1 | |
| IL_5MMI_018 | 1/A/616:620, 1/A/630:634 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_5MMI_019 | 1/A/683:685, 1/A/817:819 | No text annotation Not in a motif group | geometric IL_4V9F_017 IL_95997.1 | |
| IL_5MMI_020 | 1/A/685:689, 1/A/810:817 | No text annotation Not in a motif group | homologous IL_7RQB_018 IL_17470.6 | |
| IL_5MMI_021 | 1/A/700:702, 1/A/782:784 | UU cWW Not in a motif group | geometric IL_4E48_006 IL_95997.1 | |
| IL_5MMI_022 | 1/A/708:709, 1/A/774:776 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_37497.2 | |
| IL_5MMI_023 | 1/A/713:714, 1/A/739:741 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.2 | |
| IL_5MMI_024 | 1/A/714:718, 1/A/735:739 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_5MMI_025 | 1/A/749:751, 1/A/768:769 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.1 | |
| IL_5MMI_026 | 1/A/786:788, 1/A/798:802 | Multiple bulged bases Not in a motif group | geometric IL_7A0S_021 IL_90991.6 | |
| IL_5MMI_027 | 1/A/848:850, 1/A/967:970 | No text annotation Not in a motif group | ||
| IL_5MMI_028 | 1/A/866:872, 1/A/924:930 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.3 | |
| IL_5MMI_029 | 1/A/872:873, 1/A/922:924 | Minor groove platform Not in a motif group | homologous IL_7RQB_028 IL_42622.2 | |
| IL_5MMI_030 | 1/A/874:878, 1/A/918:921 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_5MMI_031 | 1/A/880:882, 1/A/914:916 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_034 IL_52767.2 | |
| IL_5MMI_032 | 1/A/886:889, 1/A/907:910 | Double sheared Not in a motif group | geometric IL_3D0U_002 IL_09705.9 | |
| IL_5MMI_033 | 1/A/890:892, 1/A/903:906 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_5MMI_034 | 1/A/1022:1024, 1/A/1186:1187 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_5MMI_035 | 1/A/1026:1030, 1/A/1180:1184 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
| IL_5MMI_036 | 1/A/1032:1039, 1/A/1177:1178 | SSU/LSU pseudoknot Not in a motif group | homologous IL_7A0S_034 IL_15861.7 | |
| IL_5MMI_037 | 1/A/1039:1041, 1/A/1176:1177 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.13 | |
| IL_5MMI_038 | 1/A/1046:1052, 1/A/1167:1171 | No text annotation Not in a motif group | homologous IL_5J7L_280 IL_57188.3 | |
| IL_5MMI_039 | 1/A/1052:1058, 1/A/1152:1167 | No text annotation Not in a motif group | ||
| IL_5MMI_040 | 1/A/1059:1062, 1/A/1149:1151 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_5MMI_041 | 1/A/1069:1079, 1/A/1136:1142 | No text annotation Not in a motif group | ||
| IL_5MMI_042 | 1/A/1079:1081, 1/A/1134:1136 | UU cWW Not in a motif group | geometric IL_3SZX_003 IL_95997.1 | |
| IL_5MMI_043 | 1/A/1087:1091, 1/A/1103:1107 | No text annotation Not in a motif group | geometric IL_4V9F_043 IL_30542.3 | |
| IL_5MMI_044 | 1/A/1115:1119, 1/A/1128:1130 | No text annotation Not in a motif group | homologous IL_7RQB_044 NA | |
| IL_5MMI_045 | 1/A/1217:1219, 1/A/1268:1271 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
| IL_5MMI_046 | 1/A/1224:1229, 1/A/1259:1263 | tSH-tHW-tWW Not in a motif group | geometric IL_5J7L_022 IL_88269.3 | |
| IL_5MMI_047 | 1/A/1229:1236, 1/A/1255:1259 | Kink-turn Not in a motif group | geometric IL_3U4M_004 IL_70923.2 | |
| IL_5MMI_048 | 1/A/1236:1237, 1/A/1253:1255 | Single bulged U Not in a motif group | geometric IL_6UFG_004 IL_83039.13 | |
| IL_5MMI_049 | 1/A/1240:1242, 1/A/1249:1250 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_5MMI_050 | 1/A/1283:1290, 1/A/2025:2031 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_5MMI_051 | 1/A/1331:1334, 1/A/1639:1640 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7A0S_046 IL_50694.2 | |
| IL_5MMI_052 | 1/A/1340:1344, 1/A/1352:1354 | C-loop Not in a motif group | homologous IL_7A0S_047 IL_37712.2 | |
| IL_5MMI_053 | 1/A/1372:1376, 1/A/1397:1401 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_5MMI_054 | 1/A/1378:1382, 1/A/1391:1395 | tSH-tHW-tHS Not in a motif group | homologous IL_4WF9_052 IL_17136.1 | |
| IL_5MMI_055 | 1/A/1430:1432, 1/A/1627:1629 | No text annotation Not in a motif group | homologous IL_4WF9_053 NA | |
| IL_5MMI_056 | 1/A/1432:1433, 1/A/1625:1627 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_5MMI_057 | 1/A/1434:1437, 1/A/1618:1624 | No text annotation Not in a motif group | ||
| IL_5MMI_058 | 1/A/1440:1442, 1/A/1611:1615 | No text annotation Not in a motif group | ||
| IL_5MMI_059 | 1/A/1453:1456, 1/A/1591:1595 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_5MMI_060 | 1/A/1458:1461, 1/A/1585:1589 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_5MMI_061 | 1/A/1486:1490, 1/A/1554:1559 | No text annotation Not in a motif group | ||
| IL_5MMI_062 | 1/A/1493:1498, 1/A/1547:1551 | Triple sheared Not in a motif group | homologous IL_7A0S_056 IL_41507.1 | |
| IL_5MMI_063 | 1/A/1560:1564, 1/A/1575:1580 | Triple sheared related Not in a motif group | geometric IL_5J7L_063 IL_64879.2 | |
| IL_5MMI_064 | 1/A/1687:1692, 1/A/2018:2020 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_5MMI_065 | 1/A/1699:1701, 1/A/2009:2011 | Isolated tWW turn Not in a motif group | homologous IL_7A0S_060 IL_54997.7 | |
| IL_5MMI_066 | 1/A/1702:1705, 1/A/2007:2008 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7A0S_061 IL_50694.2 | |
| IL_5MMI_067 | 1/A/1705:1710, 1/A/2004:2007 | Intercalated tWH Not in a motif group | homologous IL_5J7L_307 IL_82842.2 | |
| IL_5MMI_068 | 1/A/1722:1727, 1/A/1732:1738 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5TBW_078 IL_65969.2 | |
| IL_5MMI_069 | 1/A/1780:1781, 1/A/1994:1996 | Single bulged A Not in a motif group | homologous IL_4WF9_068 IL_37497.2 | |
| IL_5MMI_070 | 1/A/1808:1814, 1/A/1823:1831 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_5MMI_071 | 1/A/1847:1850, 1/A/1916:1917 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_5MMI_072 | 1/A/1851:1852, 1/A/1912:1915 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_5MMI_073 | 1/A/1856:1859, 1/A/1907:1908 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
| IL_5MMI_074 | 1/A/1861:1865, 1/A/1901:1905 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_5MMI_075 | 1/A/1866:1869, 1/A/1897:1900 | Double sheared Not in a motif group | geometric IL_4KZD_002 IL_09705.9 | |
| IL_5MMI_076 | 1/A/1874:1877, 1/A/1888:1892 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_5MMI_077 | 1/A/1947:1948, 1/A/1978:1981 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_318 IL_59677.2 | |
| IL_5MMI_078 | 1/A/1948:1959, 1/A/1975:1978 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_5MMI_079 | 1/A/2064:2066, 1/A/2634:2635 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_5MMI_080 | 1/A/2068:2071, 1/A/2628:2632 | No text annotation Not in a motif group | ||
| IL_5MMI_081 | 1/A/2081:2083, 1/A/2459:2460 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_5MMI_082 | 1/A/2084:2085, 1/A/2455:2458 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_5MMI_083 | 1/A/2095:2098, 1/A/2252:2256 | tSH-tHW Not in a motif group | geometric IL_7RQB_011 IL_04059.1 | |
| IL_5MMI_084 | 1/A/2108:2110, 1/A/2207:2209 | No text annotation Not in a motif group | geometric IL_2ZNI_001 IL_51629.2 | |
| IL_5MMI_085 | 1/A/2112:2114, 1/A/2203:2205 | No text annotation Not in a motif group | geometric IL_1YZ9_001 IL_95997.1 | |
| IL_5MMI_086 | 1/A/2122:2137, 1/A/2189:2195 | No text annotation Not in a motif group | ||
| IL_5MMI_087 | 1/A/2138:2142, 1/A/2174:2188 | No text annotation Not in a motif group | ||
| IL_5MMI_088 | 1/A/2143:2152, 1/A/2167:2173 | No text annotation Not in a motif group | ||
| IL_5MMI_089 | 1/A/2218:2220, 1/A/2235:2236 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_5MMI_090 | 1/A/2314:2315, 1/A/2335:2338 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7A0S_046 IL_50694.2 | |
| IL_5MMI_091 | 1/A/2367:2370, 1/A/2381:2384 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_5MMI_092 | 1/A/2418:2420, 1/A/2431:2432 | Single bulged U Not in a motif group | homologous IL_5J7L_334 IL_83039.13 | |
| IL_5MMI_093 | 1/A/2471:2472, 1/A/2513:2515 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_5MMI_094 | 1/A/2474:2476, 1/A/2510:2511 | Major groove platform Not in a motif group | homologous IL_7A0S_085 IL_27635.1 | |
| IL_5MMI_095 | 1/A/2476:2478, 1/A/2506:2510 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_92788.2 | |
| IL_5MMI_096 | 1/A/2483:2487, 1/A/2497:2501 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_5MMI_097 | 1/A/2527:2529, 1/A/2591:2595 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
| IL_5MMI_098 | 1/A/2529:2531, 1/A/2587:2591 | No text annotation Not in a motif group | ||
| IL_5MMI_099 | 1/A/2539:2540, 1/A/2557:2560 | Minor groove platform with intercalation Not in a motif group | homologous IL_4WF9_097 IL_95601.3 | |
| IL_5MMI_100 | 1/A/2608:2609, 1/A/2618:2620 | Single bulged A Not in a motif group | homologous IL_5J7L_344 IL_37497.2 | |
| IL_5MMI_101 | 1/A/2653:2657, 1/A/2792:2800 | tSH-tHS-tHW Not in a motif group | geometric IL_7RQB_102 IL_04638.1 | |
| IL_5MMI_102 | 1/A/2657:2659, 1/A/2790:2792 | No text annotation Not in a motif group | geometric IL_6IA2_001 IL_95997.1 | |
| IL_5MMI_103 | 1/A/2669:2675, 1/A/2680:2685 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7A0S_094 IL_16458.1 | |
| IL_5MMI_104 | 1/A/2697:2701, 1/A/2743:2745 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_5MMI_105 | 1/A/2704:2708, 1/A/2736:2740 | UAA/GAN Not in a motif group | geometric IL_4V9F_094 IL_07235.1 | |
| IL_5MMI_106 | 1/A/2712:2713, 1/A/2728:2732 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_5MMI_107 | 1/A/2752:2754, 1/A/2786:2787 | Single bulged C Not in a motif group | geometric IL_1S03_006 IL_61258.12 | |
| IL_5MMI_108 | 1/A/2755:2760, 1/A/2780:2785 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_5MMI_109 | 1/B/18:19, 1/B/66:68 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_37497.2 | |
| IL_5MMI_110 | 1/B/24:30, 1/B/56:61 | No text annotation Not in a motif group | ||
| IL_5MMI_111 | 1/B/31:32, 1/B/53:55 | Major groove platform Not in a motif group | geometric IL_7A0S_084 IL_27635.1 | |
| IL_5MMI_112 | 1/B/36:39, 1/B/45:49 | No text annotation Not in a motif group | ||
| IL_5MMI_113 | 1/B/72:80, 1/B/99:107 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_5MMI_114 | 1/W/42:43, 1/W/82:84 | Major groove intercalation Not in a motif group | geometric IL_4WF9_106 IL_16396.2 | |
| IL_5MMI_115 | 1/W/47:49, 1/W/75:78 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4V9F_076 IL_38958.7 | |
| IL_5MMI_116 | 1/W/51:56, 1/W/69:73 | No text annotation Not in a motif group | geometric IL_4WF9_108 IL_83162.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5MMI_001 | 1/A/55:66, 1/A/73:75, 1/A/108:112 | No text annotation Not in a motif group | ||
| J3_5MMI_002 | 1/A/254:258, 1/A/269:276, 1/A/381:382 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
| J3_5MMI_003 | 1/A/694:700, 1/A/784:786, 1/A/802:805 | No text annotation Not in a motif group | homologous J3_4WF9_002 NA | |
| J3_5MMI_004 | 1/A/709:711, 1/A/743:747, 1/A/771:774 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_5MMI_005 | 1/A/856:862, 1/A/934:938, 1/A/958:961 | No text annotation Not in a motif group | ||
| J3_5MMI_006 | 1/A/1083:1085, 1/A/1109:1115, 1/A/1130:1132 | No text annotation Not in a motif group | ||
| J3_5MMI_007 | 1/A/1319:1324, 1/A/1661:1663, 1/A/1675:1678 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_5MMI_008 | 1/A/1326:1330, 1/A/1641:1647, 1/A/1656:1659 | No text annotation Not in a motif group | homologous J3_4WF9_005 NA | |
| J3_5MMI_009 | 1/A/1365:1371, 1/A/1402:1406, 1/A/1423:1424 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_5MMI_010 | 1/A/1500:1502, 1/A/1518:1524, 1/A/1542:1545 | No text annotation Not in a motif group | ||
| J3_5MMI_011 | 1/A/2104:2107, 1/A/2210:2214, 1/A/2240:2246 | No text annotation Not in a motif group | ||
| J3_5MMI_012 | 1/A/2312:2314, 1/A/2338:2340, 1/A/2349:2354 | No text annotation Not in a motif group | homologous J3_4WF9_008 NA | |
| J3_5MMI_013 | 1/A/2534:2537, 1/A/2562:2564, 1/A/2578:2584 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_5MMI_014 | 1/A/2807:2808, 1/W/2:7, 1/W/93:98 | No text annotation Not in a motif group | ||
| J3_5MMI_015 | 1/B/12:17, 1/B/69:70, 1/B/109:111 | No text annotation Not in a motif group | ||
| J3_5MMI_016 | 1/W/10:12, 1/W/26:40, 1/W/86:90 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: