3J6Y Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3J6Y_001 | 1/1S/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_3J6Y_002 | 1/1S/70:81 | No text annotation | geometric HL_7A0S_011 HL_75660.5 | |
| HL_3J6Y_003 | 1/1S/154:160 | GNRA related | homologous HL_4V88_188 NA | |
| HL_3J6Y_004 | 1/1S/190:195 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_3J6Y_005 | 1/1S/230:235 | No text annotation | ||
| HL_3J6Y_006 | 1/1S/243:250 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_3J6Y_007 | 1/1S/276:279 | Mini UNCG | geometric HL_5TBW_071 NA | |
| HL_3J6Y_008 | 1/1S/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_3J6Y_116 | 1/1S/368:373 | No text annotation | homologous HL_8P9A_198 HL_93535.1 | |
| HL_3J6Y_010 | 1/1S/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_3J6Y_011 | 1/1S/414:419 | UNCG | homologous HL_4V88_196 NA | |
| HL_3J6Y_012 | 1/1S/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_3J6Y_117 | 1/1S/487:500 | No text annotation | ||
| HL_3J6Y_013 | 1/1S/491:496 | No text annotation | homologous HL_4V88_198 NA | |
| HL_3J6Y_014 | 1/1S/520:532 | No text annotation | geometric HL_4V88_199 NA | |
| HL_3J6Y_015 | 1/1S/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_3J6Y_016 | 1/1S/703:735 | No text annotation | ||
| HL_3J6Y_017 | 1/1S/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_3J6Y_018 | 1/1S/777:783 | No text annotation | ||
| HL_3J6Y_019 | 1/1S/829:843 | Pseudoknot geometry | homologous HL_4V88_205 NA | |
| HL_3J6Y_020 | 1/1S/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_3J6Y_021 | 1/1S/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_3J6Y_022 | 1/1S/997:1007 | No text annotation | homologous HL_4V88_208 NA | |
| HL_3J6Y_023 | 1/1S/1055:1064 | No text annotation | ||
| HL_3J6Y_024 | 1/1S/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_3J6Y_025 | 1/1S/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_3J6Y_026 | 1/1S/1188:1197 | No text annotation | homologous HL_4V88_212 NA | |
| HL_3J6Y_027 | 1/1S/1238:1247 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_3J6Y_028 | 1/1S/1296:1301 | GNRA | homologous HL_4V88_214 NA | |
| HL_3J6Y_029 | 1/1S/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_3J6Y_030 | 1/1S/1359:1364 | No text annotation | homologous HL_4V88_216 NA | |
| HL_3J6Y_031 | 1/1S/1396:1402 | GNRA | homologous HL_4V88_217 NA | |
| HL_3J6Y_032 | 1/1S/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
| HL_3J6Y_033 | 1/1S/1550:1561 | No text annotation | homologous HL_4V88_219 NA | |
| HL_3J6Y_034 | 1/1S/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_3J6Y_035 | 1/1S/1687:1714 | No text annotation | ||
| HL_3J6Y_036 | 1/1S/1778:1783 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_3J6Y_037 | 1/2S/38:45 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_3J6Y_038 | 1/2S/69:74 | No text annotation | homologous HL_5TBW_002 NA | |
| HL_3J6Y_039 | 1/2S/90:96 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_3J6Y_040 | 1/2S/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_3J6Y_041 | 1/2S/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_3J6Y_042 | 1/2S/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_3J6Y_043 | 1/2S/216:224 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_3J6Y_044 | 1/2S/278:287 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_3J6Y_045 | 1/2S/303:312 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_3J6Y_046 | 1/2S/357:362 | GNRA | homologous HL_5TBW_010 NA | |
| HL_3J6Y_047 | 1/2S/382:387 | GNRA | homologous HL_5TBW_011 NA | |
| HL_3J6Y_118 | 1/2S/543:548 | No text annotation | homologous HL_8P9A_231 HL_13189.1 | |
| HL_3J6Y_049 | 1/2S/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_3J6Y_050 | 1/2S/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_3J6Y_051 | 1/2S/687:693 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_3J6Y_052 | 1/2S/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_3J6Y_053 | 1/2S/732:737 | GNRA | homologous HL_5TBW_017 NA | |
| HL_3J6Y_054 | 1/2S/763:768 | No text annotation | homologous HL_5TBW_018 NA | |
| HL_3J6Y_055 | 1/2S/844:849 | GNRA | homologous HL_8C3A_019 NA | |
| HL_3J6Y_056 | 1/2S/876:885 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_3J6Y_057 | 1/2S/910:918 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_3J6Y_058 | 1/2S/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_3J6Y_059 | 1/2S/1023:1029 | GNRA | homologous HL_5TBW_023 NA | |
| HL_3J6Y_060 | 1/2S/1076:1083 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_3J6Y_061 | 1/2S/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_3J6Y_062 | 1/2S/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_3J6Y_063 | 1/2S/1239:1249 | No text annotation | homologous HL_8C3A_027 NA | |
| HL_3J6Y_064 | 1/2S/1267:1274 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_3J6Y_065 | 1/2S/1347:1357 | No text annotation | homologous HL_5TBW_029 NA | |
| HL_3J6Y_066 | 1/2S/1403:1408 | GNRA | homologous HL_5TBW_030 NA | |
| HL_3J6Y_067 | 1/2S/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_3J6Y_068 | 1/2S/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_3J6Y_069 | 1/2S/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_3J6Y_070 | 1/2S/1566:1572 | No text annotation | ||
| HL_3J6Y_071 | 1/2S/1599:1608 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_3J6Y_072 | 1/2S/1634:1639 | GNRA | homologous HL_5TBW_036 NA | |
| HL_3J6Y_073 | 1/2S/1680:1688 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_3J6Y_074 | 1/2S/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_3J6Y_075 | 1/2S/1759:1766 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_3J6Y_076 | 1/2S/1792:1796 | Mini UNCG | homologous HL_5TBW_040 NA | |
| HL_3J6Y_077 | 1/2S/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_3J6Y_119 | 1/2S/1862:1868 | GNRA | homologous HL_8P9A_153 HL_37824.7 | |
| HL_3J6Y_079 | 1/2S/1923:1928 | UNCG | homologous HL_8C3A_043 NA | |
| HL_3J6Y_081 | 1/2S/2061:2075 | No text annotation | ||
| HL_3J6Y_082 | 1/2S/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_3J6Y_083 | 1/2S/2135:2145 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_3J6Y_084 | 1/2S/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_3J6Y_085 | 1/2S/2220:2225 | GNRA | homologous HL_5TBW_048 NA | |
| HL_3J6Y_086 | 1/2S/2253:2263 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_3J6Y_087 | 1/2S/2292:2300 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_3J6Y_088 | 1/2S/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_3J6Y_120 | 1/2S/2449:2497 | No text annotation | ||
| HL_3J6Y_089 | 1/2S/2463:2492 | No text annotation | ||
| HL_3J6Y_121 | 1/2S/2535:2544 | No text annotation | ||
| HL_3J6Y_091 | 1/2S/2568:2573 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_3J6Y_092 | 1/2S/2616:2624 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_3J6Y_093 | 1/2S/2633:2645 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_3J6Y_094 | 1/2S/2673:2681 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_3J6Y_095 | 1/2S/2693:2700 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_3J6Y_096 | 1/2S/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_3J6Y_097 | 1/2S/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_3J6Y_098 | 1/2S/2776:2784 | Pseudoknot geometry | homologous HL_5TBW_060 NA | |
| HL_3J6Y_099 | 1/2S/2840:2848 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_3J6Y_100 | 1/2S/2897:2904 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_3J6Y_101 | 1/2S/2920:2926 | No text annotation | homologous HL_8C3A_064 NA | |
| HL_3J6Y_102 | 1/2S/2963:2968 | GNRA | homologous HL_5TBW_064 NA | |
| HL_3J6Y_103 | 1/2S/3025:3030 | GNRA | homologous HL_8C3A_066 NA | |
| HL_3J6Y_122 | 1/2S/3068:3073 | No text annotation | homologous HL_8P9A_177 HL_65794.5 | |
| HL_3J6Y_105 | 1/2S/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_3J6Y_106 | 1/2S/3194:3197 | No text annotation | homologous HL_5TBW_068 NA | |
| HL_3J6Y_107 | 1/2S/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_3J6Y_108 | 1/2S/3303:3311 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_3J6Y_109 | 1/2S/3350:3353 | Mini UNCG | geometric HL_4V88_192 NA | |
| HL_3J6Y_110 | 1/5S/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_3J6Y_111 | 1/5S/88:93 | GNRA | homologous HL_4V9F_072 HL_37824.7 | |
| HL_3J6Y_112 | 1/8S/47:56 | Pseudoknot with intercalation | geometric HL_7A0S_001 HL_93438.2 | |
| HL_3J6Y_113 | 1/8S/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_3J6Y_114 | 1/8S/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_3J6Y_115 | 1/8S/124:129 | No text annotation | homologous HL_5TBW_076 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J6Y_009 | No text annotation | ||
| HL_3J6Y_048 | No text annotation | ||
| HL_3J6Y_078 | GNRA related | ||
| HL_3J6Y_080 | No text annotation | ||
| HL_3J6Y_090 | No text annotation | ||
| HL_3J6Y_104 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3J6Y_001 | 1/1S/24:26, 1/1S/600:601 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_3J6Y_002 | 1/1S/35:37, 1/1S/471:473 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_3J6Y_003 | 1/1S/37:41, 1/1S/466:471 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_3J6Y_004 | 1/1S/42:48, 1/1S/431:433 | No text annotation | geometric IL_4V88_387 NA | |
| IL_3J6Y_005 | 1/1S/50:52, 1/1S/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_3J6Y_006 | 1/1S/58:63, 1/1S/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_3J6Y_007 | 1/1S/64:69, 1/1S/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_3J6Y_008 | 1/1S/109:112, 1/1S/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_3J6Y_009 | 1/1S/113:116, 1/1S/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_3J6Y_010 | 1/1S/117:122, 1/1S/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_3J6Y_011 | 1/1S/144:149, 1/1S/165:171 | tWH-tWH-tHW-tHW | geometric IL_4LFB_009 IL_12745.1 | |
| IL_3J6Y_012 | 1/1S/150:152, 1/1S/162:164 | Isolated cWH basepair | geometric IL_5F5F_003 IL_10167.5 | |
| IL_3J6Y_013 | 1/1S/186:189, 1/1S/196:199 | Double sheared | homologous IL_4V88_396 NA | |
| IL_3J6Y_014 | 1/1S/204:206, 1/1S/259:263 | Major groove platform with extra cWW | homologous IL_4V88_397 NA | |
| IL_3J6Y_015 | 1/1S/206:208, 1/1S/257:259 | Isolated non-canonical cWW pair | geometric IL_5VCI_001 IL_28037.2 | |
| IL_3J6Y_016 | 1/1S/265:267, 1/1S/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_3J6Y_017 | 1/1S/270:273, 1/1S/283:285 | No text annotation | homologous IL_4V88_400 NA | |
| IL_3J6Y_018 | 1/1S/275:276, 1/1S/279:281 | Single bulged U | geometric IL_4V88_401 NA | |
| IL_3J6Y_019 | 1/1S/311:316, 1/1S/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_3J6Y_231 | 1/1S/318:323, 1/1S/345:346 | No text annotation | homologous IL_8C3A_411 NA | |
| IL_3J6Y_021 | 1/1S/363:365, 1/1S/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_3J6Y_022 | 1/1S/389:391, 1/1S/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_3J6Y_023 | 1/1S/411:413, 1/1S/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_3J6Y_024 | 1/1S/439:441, 1/1S/463:464 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_3J6Y_025 | 1/1S/443:447, 1/1S/460:461 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_3J6Y_026 | 1/1S/447:448, 1/1S/458:460 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_3J6Y_027 | 1/1S/480:483, 1/1S/504:508 | No text annotation | ||
| IL_3J6Y_028 | 1/1S/517:518, 1/1S/533:535 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_3J6Y_029 | 1/1S/518:520, 1/1S/532:533 | Minor groove platform | homologous IL_4V88_412 NA | |
| IL_3J6Y_030 | 1/1S/550:557, 1/1S/587:588 | SSU/LSU pseudoknot | homologous IL_4V88_413 NA | |
| IL_3J6Y_031 | 1/1S/557:559, 1/1S/586:587 | Single bulged U | geometric IL_5J7L_046 IL_89505.4 | |
| IL_3J6Y_032 | 1/1S/562:568, 1/1S/575:583 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_3J6Y_033 | 1/1S/616:622, 1/1S/1104:1105 | No text annotation | homologous IL_4V88_416 NA | |
| IL_3J6Y_034 | 1/1S/624:626, 1/1S/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_3J6Y_035 | 1/1S/627:631, 1/1S/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_3J6Y_036 | 1/1S/646:648, 1/1S/686:688 | Isolated non-canonical cWW pair | homologous IL_4V88_419 NA | |
| IL_3J6Y_037 | 1/1S/651:658, 1/1S/676:683 | No text annotation | ||
| IL_3J6Y_038 | 1/1S/746:747, 1/1S/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_3J6Y_232 | 1/1S/748:750, 1/1S/799:801 | Isolated non-canonical cWW pair | homologous IL_8P9A_413 IL_28037.2 | |
| IL_3J6Y_040 | 1/1S/751:759, 1/1S/791:798 | No text annotation | homologous IL_4V88_425 NA | |
| IL_3J6Y_041 | 1/1S/817:824, 1/1S/848:854 | No text annotation | ||
| IL_3J6Y_042 | 1/1S/865:866, 1/1S/962:965 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_50694.7 | |
| IL_3J6Y_233 | 1/1S/868:869, 1/1S/958:960 | Single bulged U | geometric IL_3NDB_005 IL_89505.4 | |
| IL_3J6Y_044 | 1/1S/871:873, 1/1S/954:956 | Isolated non-canonical cWW pair | geometric IL_5TBW_068 NA | |
| IL_3J6Y_045 | 1/1S/874:878, 1/1S/950:953 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_3J6Y_046 | 1/1S/886:888, 1/1S/924:926 | Isolated non-canonical cWW pair | geometric IL_3HHN_004 IL_87907.2 | |
| IL_3J6Y_047 | 1/1S/893:899, 1/1S/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_3J6Y_048 | 1/1S/985:990, 1/1S/1014:1016 | Other IL | geometric IL_4V88_435 NA | |
| IL_3J6Y_049 | 1/1S/990:994, 1/1S/1010:1014 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_3J6Y_050 | 1/1S/1034:1036, 1/1S/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_3J6Y_051 | 1/1S/1041:1044, 1/1S/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_3J6Y_052 | 1/1S/1051:1053, 1/1S/1066:1067 | Single bulged U | homologous IL_4V88_439 NA | |
| IL_3J6Y_053 | 1/1S/1111:1118, 1/1S/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_3J6Y_054 | 1/1S/1146:1147, 1/1S/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_3J6Y_055 | 1/1S/1149:1151, 1/1S/1627:1628 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_3J6Y_056 | 1/1S/1157:1160, 1/1S/1617:1621 | C-loop | homologous IL_4V88_443 NA | |
| IL_3J6Y_057 | 1/1S/1173:1175, 1/1S/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_3J6Y_058 | 1/1S/1178:1179, 1/1S/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_3J6Y_059 | 1/1S/1213:1215, 1/1S/1448:1450 | Isolated non-canonical cWW pair | geometric IL_4J39_001 IL_87907.2 | |
| IL_3J6Y_060 | 1/1S/1224:1230, 1/1S/1257:1259 | No text annotation | ||
| IL_3J6Y_234 | 1/1S/1224:1233, 1/1S/1252:1259 | Kink-turn | geometric IL_4V88_447 NA | |
| IL_3J6Y_061 | 1/1S/1230:1233, 1/1S/1252:1257 | No text annotation | ||
| IL_3J6Y_062 | 1/1S/1234:1237, 1/1S/1248:1251 | No text annotation | ||
| IL_3J6Y_063 | 1/1S/1268:1270, 1/1S/1440:1441 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_3J6Y_064 | 1/1S/1272:1276, 1/1S/1436:1438 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_3J6Y_235 | 1/1S/1272:1278, 1/1S/1430:1438 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_3J6Y_065 | 1/1S/1276:1278, 1/1S/1430:1436 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_3J6Y_066 | 1/1S/1280:1281, 1/1S/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_3J6Y_067 | 1/1S/1290:1292, 1/1S/1323:1325 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_3J6Y_068 | 1/1S/1306:1308, 1/1S/1317:1318 | Minor groove platform | geometric IL_5TBW_039 NA | |
| IL_3J6Y_069 | 1/1S/1339:1342, 1/1S/1383:1385 | Isolated non-canonical cWW pair | homologous IL_4V88_455 NA | |
| IL_3J6Y_070 | 1/1S/1345:1348, 1/1S/1377:1380 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_3J6Y_071 | 1/1S/1352:1354, 1/1S/1369:1373 | Isolated non-canonical cWW pair | homologous IL_4V88_457 NA | |
| IL_3J6Y_072 | 1/1S/1389:1391, 1/1S/1407:1412 | Major groove platform; stack outside cWW | geometric IL_4V88_458 NA | |
| IL_3J6Y_257 | 1/1S/1480:1486, 1/1S/1520:1527 | No text annotation | ||
| IL_3J6Y_073 | 1/1S/1488:1494, 1/1S/1513:1518 | 180 degree turn | homologous IL_4V88_460 NA | |
| IL_3J6Y_074 | 1/1S/1495:1498, 1/1S/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_3J6Y_075 | 1/1S/1540:1545, 1/1S/1566:1571 | No text annotation | geometric IL_4V88_462 NA | |
| IL_3J6Y_076 | 1/1S/1636:1638, 1/1S/1764:1767 | No text annotation | homologous IL_4V88_463 NA | |
| IL_3J6Y_077 | 1/1S/1638:1641, 1/1S/1760:1764 | No text annotation | geometric IL_4V88_464 NA | |
| IL_3J6Y_078 | 1/1S/1642:1644, 1/1S/1757:1759 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_3J6Y_079 | 1/1S/1644:1647, 1/1S/1753:1757 | No text annotation | homologous IL_8CRE_469 IL_11399.2 | |
| IL_3J6Y_080 | 1/1S/1650:1652, 1/1S/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_3J6Y_081 | 1/1S/1653:1656, 1/1S/1744:1747 | Double sheared | geometric IL_4V88_468 NA | |
| IL_3J6Y_237 | 1/1S/1656:1658, 1/1S/1743:1744 | Single bulged U | homologous IL_8P9A_458 IL_89505.4 | |
| IL_3J6Y_083 | 1/1S/1665:1667, 1/1S/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_3J6Y_084 | 1/1S/1669:1672, 1/1S/1729:1732 | Double sheared | geometric IL_1SAQ_002 NA | |
| IL_3J6Y_085 | 1/1S/1672:1674, 1/1S/1727:1729 | Isolated non-canonical cWW pair | homologous IL_4V88_472 NA | |
| IL_3J6Y_086 | 1/1S/1675:1678, 1/1S/1723:1726 | Tandem non-canonical cWW pairs | geometric IL_4UYK_003 IL_77658.1 | |
| IL_3J6Y_087 | 1/1S/1678:1682, 1/1S/1719:1723 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_3J6Y_089 | 1/2S/7:8, 1/8S/150:152 | Single bulged C | homologous IL_5TBW_002 NA | |
| IL_3J6Y_090 | 1/2S/13:15, 1/8S/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_3J6Y_091 | 1/2S/27:28, 1/2S/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_3J6Y_092 | 1/2S/31:38, 1/2S/45:53 | tSH-tHW-tHH-tHS | geometric IL_5TBW_005 NA | |
| IL_3J6Y_093 | 1/2S/82:89, 1/2S/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_3J6Y_094 | 1/2S/123:124, 1/2S/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_3J6Y_095 | 1/2S/125:127, 1/2S/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_3J6Y_096 | 1/2S/163:165, 1/2S/257:258 | Single stack bend | homologous IL_5TBW_009 NA | |
| IL_3J6Y_097 | 1/2S/169:170, 1/2S/248:253 | No text annotation | homologous IL_5TBW_010 NA | |
| IL_3J6Y_239 | 1/2S/177:178, 1/2S/238:241 | No text annotation | geometric IL_5TBW_501 NA | |
| IL_3J6Y_099 | 1/2S/189:191, 1/2S/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_3J6Y_100 | 1/2S/337:339, 1/8S/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_3J6Y_101 | 1/2S/376:379, 1/2S/390:403 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_3J6Y_102 | 1/2S/404:410, 1/8S/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_3J6Y_103 | 1/2S/429:431, 1/2S/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_3J6Y_241 | 1/2S/512:513, 1/2S/577:579 | Single bulged A | homologous IL_8P9A_246 IL_31462.5 | |
| IL_3J6Y_258 | 1/2S/517:524, 1/2S/568:573 | No text annotation | ||
| IL_3J6Y_107 | 1/2S/531:538, 1/2S/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_3J6Y_108 | 1/2S/668:670, 1/2S/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_3J6Y_109 | 1/2S/680:684, 1/2S/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_3J6Y_242 | 1/2S/725:728, 1/2S/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_3J6Y_111 | 1/2S/752:753, 1/2S/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_3J6Y_112 | 1/2S/755:756, 1/2S/775:777 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_3J6Y_113 | 1/2S/758:763, 1/2S/768:773 | No text annotation | geometric IL_5TBW_026 NA | |
| IL_3J6Y_114 | 1/2S/803:805, 1/2S/938:940 | Isolated non-canonical cWW pair | geometric IL_4KNQ_002 IL_87907.2 | |
| IL_3J6Y_115 | 1/2S/805:809, 1/2S/931:938 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_3J6Y_116 | 1/2S/833:834, 1/2S/859:861 | Single bulged G | geometric IL_7A0S_017 IL_00225.13 | |
| IL_3J6Y_117 | 1/2S/834:838, 1/2S/855:859 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_3J6Y_118 | 1/2S/869:872, 1/2S/888:890 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_3J6Y_119 | 1/2S/873:875, 1/2S/886:887 | Single bulged U | homologous IL_5TBW_032 NA | |
| IL_3J6Y_120 | 1/2S/907:909, 1/2S/919:923 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_3J6Y_121 | 1/2S/954:956, 1/2S/965:967 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_3J6Y_122 | 1/2S/969:970, 1/2S/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_3J6Y_123 | 1/2S/977:981, 1/2S/1102:1104 | 180 degree turn | homologous IL_5TBW_036 NA | |
| IL_3J6Y_243 | 1/2S/983:985, 1/2S/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_3J6Y_125 | 1/2S/991:997, 1/2S/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5TBW_038 NA | |
| IL_3J6Y_244 | 1/2S/997:998, 1/2S/1050:1052 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_3J6Y_127 | 1/2S/999:1004, 1/2S/1046:1049 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_3J6Y_128 | 1/2S/1006:1009, 1/2S/1041:1044 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_3J6Y_129 | 1/2S/1009:1011, 1/2S/1039:1041 | Isolated non-canonical cWW pair | geometric IL_5J7L_061 IL_87907.2 | |
| IL_3J6Y_130 | 1/2S/1014:1018, 1/2S/1034:1036 | No text annotation | homologous IL_8C3A_508 NA | |
| IL_3J6Y_131 | 1/2S/1069:1071, 1/2S/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_3J6Y_132 | 1/2S/1074:1076, 1/2S/1083:1084 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_3J6Y_133 | 1/2S/1120:1122, 1/2S/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_3J6Y_134 | 1/2S/1167:1171, 1/2S/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_3J6Y_135 | 1/2S/1173:1180, 1/2S/1325:1326 | SSU/LSU pseudoknot | geometric IL_5TBW_049 NA | |
| IL_3J6Y_136 | 1/2S/1180:1182, 1/2S/1324:1325 | Single bulged U | homologous IL_5TBW_050 NA | |
| IL_3J6Y_137 | 1/2S/1187:1194, 1/2S/1314:1319 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_3J6Y_138 | 1/2S/1194:1205, 1/2S/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_3J6Y_139 | 1/2S/1207:1209, 1/2S/1296:1297 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_3J6Y_140 | 1/2S/1218:1226, 1/2S/1283:1287 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_3J6Y_141 | 1/2S/1234:1238, 1/2S/1250:1254 | No text annotation | homologous IL_8C3A_058 NA | |
| IL_3J6Y_142 | 1/2S/1262:1266, 1/2S/1275:1277 | Major groove platform with extra cWW | geometric IL_1MMS_002 IL_51387.2 | |
| IL_3J6Y_245 | 1/2S/1377:1378, 1/2S/1428:1430 | No text annotation | ||
| IL_3J6Y_144 | 1/2S/1385:1387, 1/2S/1420:1421 | Single bulged A | homologous IL_5TBW_058 NA | |
| IL_3J6Y_145 | 1/2S/1388:1395, 1/2S/1415:1419 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_3J6Y_146 | 1/2S/1398:1400, 1/2S/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_3J6Y_246 | 1/2S/1444:1450, 1/2S/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_3J6Y_247 | 1/2S/1501:1505, 1/2S/1513:1515 | C-loop | homologous IL_8C3A_482 NA | |
| IL_3J6Y_149 | 1/2S/1532:1536, 1/2S/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_3J6Y_150 | 1/2S/1562:1566, 1/2S/1572:1577 | No text annotation | ||
| IL_3J6Y_151 | 1/2S/1618:1621, 1/2S/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_3J6Y_259 | 1/2S/1623:1624, 1/2S/1819:1822 | No text annotation | homologous IL_8CRE_070 IL_82107.4 | |
| IL_3J6Y_153 | 1/2S/1627:1631, 1/2S/1811:1816 | No text annotation | geometric IL_5TBW_066 NA | |
| IL_3J6Y_154 | 1/2S/1645:1649, 1/2S/1806:1810 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_3J6Y_155 | 1/2S/1661:1663, 1/2S/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_3J6Y_156 | 1/2S/1669:1670, 1/2S/1778:1780 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_3J6Y_157 | 1/2S/1670:1671, 1/2S/1776:1778 | Single stack bend | homologous IL_5TBW_070 NA | |
| IL_3J6Y_158 | 1/2S/1694:1698, 1/2S/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_3J6Y_159 | 1/2S/1702:1707, 1/2S/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_3J6Y_160 | 1/2S/1711:1717, 1/2S/1727:1733 | No text annotation | homologous IL_8C3A_079 NA | |
| IL_3J6Y_161 | 1/2S/1883:1889, 1/2S/2346:2349 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_3J6Y_162 | 1/2S/1895:1897, 1/2S/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_3J6Y_163 | 1/2S/1898:1901, 1/2S/2336:2337 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_3J6Y_248 | 1/2S/1898:1906, 1/2S/2333:2337 | No text annotation | homologous IL_8P9A_305 IL_22854.4 | |
| IL_3J6Y_164 | 1/2S/1901:1906, 1/2S/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_3J6Y_165 | 1/2S/1918:1923, 1/2S/1928:1934 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_3J6Y_166 | 1/2S/1940:1942, 1/2S/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_3J6Y_167 | 1/2S/1947:1948, 1/2S/2098:2101 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_3J6Y_169 | 1/2S/1970:1978, 1/2S/2041:2049 | No text annotation | ||
| IL_3J6Y_170 | 1/2S/2128:2129, 1/2S/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_3J6Y_171 | 1/2S/2156:2161, 1/2S/2173:2180 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_3J6Y_172 | 1/2S/2196:2199, 1/2S/2245:2246 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_3J6Y_173 | 1/2S/2200:2201, 1/2S/2241:2244 | Major groove intercalation | homologous IL_5TBW_085 NA | |
| IL_3J6Y_174 | 1/2S/2204:2210, 1/2S/2235:2238 | No text annotation | ||
| IL_3J6Y_175 | 1/2S/2211:2217, 1/2S/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_3J6Y_176 | 1/2S/2276:2277, 1/2S/2307:2310 | Bulged stacked bases | geometric IL_4V9F_070 IL_22551.3 | |
| IL_3J6Y_177 | 1/2S/2277:2288, 1/2S/2304:2307 | No text annotation | homologous IL_5TBW_090 NA | |
| IL_3J6Y_178 | 1/2S/2391:2394, 1/2S/2986:2988 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_3J6Y_179 | 1/2S/2396:2398, 1/2S/2981:2984 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_3J6Y_180 | 1/2S/2409:2411, 1/2S/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_3J6Y_181 | 1/2S/2412:2413, 1/2S/2807:2810 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_3J6Y_182 | 1/2S/2423:2425, 1/2S/2604:2607 | Isolated tHS basepair with bulges | homologous IL_5TBW_095 NA | |
| IL_3J6Y_183 | 1/2S/2444:2448, 1/2S/2499:2503 | No text annotation | ||
| IL_3J6Y_250 | 1/2S/2444:2449, 1/2S/2497:2503 | No text annotation | ||
| IL_3J6Y_184 | 1/2S/2448:2449, 1/2S/2497:2499 | Single bulged U | geometric IL_5TBW_146 NA | |
| IL_3J6Y_185 | 1/2S/2449:2463, 1/2S/2492:2497 | No text annotation | ||
| IL_3J6Y_186 | 1/2S/2520:2526, 1/2S/2584:2587 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_3J6Y_187 | 1/2S/2614:2615, 1/2S/2625:2627 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_3J6Y_188 | 1/2S/2666:2668, 1/2S/2686:2690 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_3J6Y_189 | 1/2S/2718:2721, 1/2S/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_3J6Y_190 | 1/2S/2770:2773, 1/2S/2787:2788 | Single stack bend with bulge | homologous IL_8C3A_110 NA | |
| IL_3J6Y_191 | 1/2S/2823:2830, 1/2S/2858:2867 | No text annotation | ||
| IL_3J6Y_192 | 1/2S/2835:2839, 1/2S/2849:2853 | Triple sheared | homologous IL_5TBW_106 NA | |
| IL_3J6Y_251 | 1/2S/2876:2877, 1/2S/2949:2951 | No text annotation | homologous IL_8P9A_334 IL_07039.3 | |
| IL_3J6Y_194 | 1/2S/2879:2881, 1/2S/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_3J6Y_195 | 1/2S/2881:2882, 1/2S/2940:2943 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_3J6Y_252 | 1/2S/2889:2892, 1/2S/2909:2914 | No text annotation | homologous IL_8C3A_486 NA | |
| IL_3J6Y_197 | 1/2S/2918:2920, 1/2S/2926:2928 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_3J6Y_198 | 1/2S/2960:2961, 1/2S/2970:2972 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_3J6Y_199 | 1/2S/3004:3007, 1/2S/3139:3144 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_3J6Y_200 | 1/2S/3012:3014, 1/2S/3040:3042 | Isolated non-canonical cWW pair | homologous IL_5TBW_115 NA | |
| IL_3J6Y_253 | 1/2S/3019:3025, 1/2S/3030:3035 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_4V9F_092 IL_26307.2 | |
| IL_3J6Y_202 | 1/2S/3047:3051, 1/2S/3091:3094 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_3J6Y_203 | 1/2S/3054:3059, 1/2S/3084:3088 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_3J6Y_204 | 1/2S/3063:3064, 1/2S/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_3J6Y_205 | 1/2S/3103:3107, 1/2S/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_3J6Y_254 | 1/2S/3164:3166, 1/2S/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_3J6Y_207 | 1/2S/3168:3170, 1/2S/3280:3282 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_3J6Y_208 | 1/2S/3177:3179, 1/2S/3210:3211 | Single bulged A | homologous IL_5TBW_123 NA | |
| IL_3J6Y_209 | 1/2S/3179:3188, 1/2S/3204:3210 | No text annotation | geometric IL_5TBW_124 NA | |
| IL_3J6Y_210 | 1/2S/3193:3194, 1/2S/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_3J6Y_211 | 1/2S/3225:3229, 1/2S/3258:3260 | No text annotation | homologous IL_5TBW_126 NA | |
| IL_3J6Y_212 | 1/2S/3233:3235, 1/2S/3252:3254 | Isolated non-canonical cWW pair | homologous IL_5TBW_127 NA | |
| IL_3J6Y_213 | 1/2S/3235:3238, 1/2S/3249:3252 | Tandem non-canonical cWW pairs | geometric IL_5TBW_128 NA | |
| IL_3J6Y_214 | 1/2S/3300:3303, 1/2S/3311:3314 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_3J6Y_215 | 1/2S/3318:3320, 1/2S/3387:3388 | Single bulged U | geometric IL_5TBW_146 NA | |
| IL_3J6Y_216 | 1/2S/3324:3325, 1/2S/3381:3383 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_3J6Y_217 | 1/2S/3328:3330, 1/2S/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_3J6Y_218 | 1/2S/3332:3337, 1/2S/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_3J6Y_219 | 1/2S/3340:3342, 1/2S/3363:3364 | Single bulged U | geometric IL_5TBW_134 NA | |
| IL_3J6Y_220 | 1/2S/3342:3345, 1/2S/3360:3363 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_3J6Y_221 | 1/2S/3349:3350, 1/2S/3353:3356 | Multiple bulged bases | homologous IL_5TBW_136 NA | |
| IL_3J6Y_222 | 1/5S/15:16, 1/5S/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_3J6Y_223 | 1/5S/21:27, 1/5S/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_3J6Y_224 | 1/5S/28:29, 1/5S/49:52 | Minor groove platform | geometric IL_1U6B_007 IL_51454.2 | |
| IL_3J6Y_225 | 1/5S/29:30, 1/5S/47:49 | Single stack bend | homologous IL_5TBW_375 NA | |
| IL_3J6Y_226 | 1/5S/32:36, 1/5S/41:45 | Symmetric double minor groove platform | geometric IL_5TBW_376 NA | |
| IL_3J6Y_256 | 1/5S/72:80, 1/5S/100:106 | No text annotation | homologous IL_8P9A_369 IL_04346.10 | |
| IL_3J6Y_228 | 1/5S/84:87, 1/5S/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_3J6Y_229 | 1/8S/64:66, 1/8S/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_3J6Y_230 | 1/8S/68:69, 1/8S/89:91 | Single bulged U | geometric IL_5TBW_146 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J6Y_020 | No text annotation | ||
| IL_3J6Y_039 | Tandem non-canonical cWW pairs | ||
| IL_3J6Y_043 | Isolated non-canonical cWW pair | ||
| IL_3J6Y_236 | No text annotation | ||
| IL_3J6Y_082 | Isolated cWS basepair | ||
| IL_3J6Y_088 | No text annotation | ||
| IL_3J6Y_238 | Tandem non-canonical cWW pairs | ||
| IL_3J6Y_098 | Major groove platform with extra pair | ||
| IL_3J6Y_240 | Other IL | ||
| IL_3J6Y_104 | No text annotation | ||
| IL_3J6Y_105 | No text annotation | ||
| IL_3J6Y_106 | No text annotation | ||
| IL_3J6Y_110 | Triple sheared related | ||
| IL_3J6Y_124 | Other IL | ||
| IL_3J6Y_126 | Major groove platform with extra cWW | ||
| IL_3J6Y_143 | Isolated cWS basepair | ||
| IL_3J6Y_147 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_3J6Y_148 | No text annotation | ||
| IL_3J6Y_152 | No text annotation | ||
| IL_3J6Y_249 | No text annotation | ||
| IL_3J6Y_168 | No text annotation | ||
| IL_3J6Y_193 | Major groove platform with extra pair | ||
| IL_3J6Y_196 | No text annotation | ||
| IL_3J6Y_201 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_3J6Y_206 | Tandem non-canonical cWW pairs | ||
| IL_3J6Y_260 | Tandem non-canonical cWW pairs | ||
| IL_3J6Y_255 | Triple non-canonical cWW pairs | ||
| IL_3J6Y_227 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3J6Y_001 | 1/1S/41:42, 1/1S/433:439, 1/1S/464:466 | No text annotation | homologous J3_8C3A_082 NA | |
| J3_3J6Y_032 | 1/1S/213:228, 1/1S/237:243, 1/1S/250:252 | No text annotation | ||
| J3_3J6Y_002 | 1/1S/633:635, 1/1S/861:865, 1/1S/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_3J6Y_033 | 1/1S/633:635, 1/1S/861:866, 1/1S/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_3J6Y_003 | 1/1S/760:763, 1/1S/773:775, 1/1S/785:790 | No text annotation | homologous J3_4V88_032 NA | |
| J3_3J6Y_004 | 1/1S/881:884, 1/1S/928:936, 1/1S/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_3J6Y_005 | 1/1S/1037:1039, 1/1S/1079:1083, 1/1S/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_3J6Y_006 | 1/1S/1161:1164, 1/1S/1581:1587, 1/1S/1609:1616 | No text annotation | homologous J3_4V88_035 NA | |
| J3_3J6Y_007 | 1/1S/1168:1171, 1/1S/1468:1470, 1/1S/1574:1577 | No text annotation | homologous J3_4V88_036 NA | |
| J3_3J6Y_008 | 1/1S/1180:1187, 1/1S/1198:1209, 1/1S/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_3J6Y_009 | 1/1S/1215:1220, 1/1S/1263:1267, 1/1S/1442:1448 | No text annotation | homologous J3_4V88_038 NA | |
| J3_3J6Y_010 | 1/1S/1283:1288, 1/1S/1327:1332, 1/1S/1419:1424 | No text annotation | homologous J3_4V88_039 NA | |
| J3_3J6Y_011 | 1/1S/1293:1294, 1/1S/1303:1306, 1/1S/1318:1322 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_3J6Y_012 | 1/1S/1336:1338, 1/1S/1386:1389, 1/1S/1412:1415 | No text annotation | homologous J3_4V88_040 NA | |
| J3_3J6Y_034 | 1/1S/1336:1338, 1/1S/1386:1391, 1/1S/1407:1415 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_3J6Y_013 | 1/1S/1470:1474, 1/1S/1533:1540, 1/1S/1571:1574 | No text annotation | homologous J3_4V88_041 NA | |
| J3_3J6Y_014 | 1/2S/113:123, 1/2S/149:158, 1/2S/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_3J6Y_035 | 1/2S/113:124, 1/2S/144:158, 1/2S/263:267 | No text annotation | ||
| J3_3J6Y_036 | 1/2S/185:189, 1/2S/205:214, 1/2S/226:231 | No text annotation | homologous J3_8P9A_044 J3_75408.1 | |
| J3_3J6Y_037 | 1/2S/340:356, 1/2S/363:368, 1/8S/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_3J6Y_015 | 1/2S/369:376, 1/2S/403:404, 1/8S/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_3J6Y_038 | 1/2S/369:376, 1/2S/403:410, 1/8S/13:20 | No text annotation | ||
| J3_3J6Y_039 | 1/2S/369:379, 1/2S/390:410, 1/8S/13:20 | No text annotation | ||
| J3_3J6Y_016 | 1/2S/502:503, 1/2S/588:597, 1/2S/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_3J6Y_017 | 1/2S/814:820, 1/2S/905:907, 1/2S/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_3J6Y_018 | 1/2S/828:831, 1/2S/863:867, 1/2S/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_3J6Y_019 | 1/2S/986:987, 1/2S/1062:1066, 1/2S/1092:1098 | No text annotation | homologous J3_5TBW_006 NA | |
| J3_3J6Y_020 | 1/2S/1230:1232, 1/2S/1256:1262, 1/2S/1277:1279 | No text annotation | homologous J3_8C3A_005 NA | |
| J3_3J6Y_040 | 1/2S/1479:1485, 1/2S/1857:1859, 1/2S/1871:1874 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_3J6Y_022 | 1/2S/1488:1491, 1/2S/1837:1843, 1/2S/1852:1854 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_3J6Y_023 | 1/2S/1526:1531, 1/2S/1591:1595, 1/2S/1612:1613 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_3J6Y_047 | 1/2S/1537:1542, 1/2S/1551:1561, 1/2S/1578:1584 | No text annotation | ||
| J3_3J6Y_024 | 1/2S/1631:1632, 1/2S/1641:1645, 1/2S/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_3J6Y_042 | 1/2S/1654:1658, 1/2S/1791:1792, 1/2S/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_3J6Y_025 | 1/2S/2432:2435, 1/2S/2512:2517, 1/2S/2590:2597 | No text annotation | homologous J3_5TBW_012 NA | |
| J3_3J6Y_043 | 1/2S/2529:2532, 1/2S/2547:2563, 1/2S/2578:2581 | No text annotation | homologous J3_8P9A_060 J3_28639.1 | |
| J3_3J6Y_044 | 1/2S/2651:2653, 1/2S/2754:2765, 1/2S/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_3J6Y_027 | 1/2S/2664:2666, 1/2S/2690:2692, 1/2S/2701:2706 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_3J6Y_028 | 1/2S/2886:2889, 1/2S/2914:2916, 1/2S/2930:2936 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_3J6Y_045 | 1/2S/3171:3176, 1/2S/3212:3220, 1/2S/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_3J6Y_029 | 1/2S/3298:3300, 1/2S/3314:3318, 1/2S/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_3J6Y_046 | 1/5S/9:14, 1/5S/66:67, 1/5S/111:112 | No text annotation | homologous J3_8C3A_059 NA | |
| J3_3J6Y_031 | 1/8S/44:45, 1/8S/58:64, 1/8S/96:100 | No text annotation | homologous J3_8P9A_067 J3_35667.2 | |
| J4_3J6Y_001 | 1/1S/99:107, 1/1S/307:309, 1/1S/357:361, 1/1S/383:384 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
| J4_3J6Y_002 | 1/1S/622:624, 1/1S/975:980, 1/1S/1021:1032, 1/1S/1103:1104 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_3J6Y_003 | 1/2S/112:113, 1/2S/267:272, 1/2S/293:299, 1/2S/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_3J6Y_004 | 1/2S/185:189, 1/2S/205:208, 1/2S/212:214, 1/2S/226:231 | No text annotation | homologous J4_8C3A_002 NA | |
| J4_3J6Y_005 | 1/2S/1451:1457, 1/2S/1475:1476, 1/2S/1877:1880, 1/2S/2352:2353 | No text annotation | homologous J4_8C3A_003 NA | |
| J4_3J6Y_012 | 1/2S/1492:1496, 1/2S/1520:1525, 1/2S/1614:1615, 1/2S/1829:1836 | No text annotation | homologous J4_8CRE_004 J4_69051.6 | |
| J4_3J6Y_007 | 1/2S/1674:1675, 1/2S/1693:1694, 1/2S/1752:1753, 1/2S/1772:1773 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_3J6Y_008 | 1/2S/2130:2134, 1/2S/2146:2150, 1/2S/2186:2190, 1/2S/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_3J6Y_009 | 1/2S/2192:2194, 1/2S/2248:2249, 1/2S/2267:2276, 1/2S/2310:2315 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_3J6Y_010 | 1/2S/2654:2658, 1/2S/2712:2716, 1/2S/2740:2742, 1/2S/2751:2753 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_3J6Y_011 | 1/2S/3010:3012, 1/2S/3042:3043, 1/2S/3098:3100, 1/2S/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J5_3J6Y_001 | 1/1S/31:35, 1/1S/473:479, 1/1S/509:516, 1/1S/536:546, 1/1S/592:595 | No text annotation | ||
| J5_3J6Y_002 | 1/1S/54:57, 1/1S/90:97, 1/1S/386:388, 1/1S/409:411, 1/1S/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_3J6Y_003 | 1/1S/124:143, 1/1S/172:182, 1/1S/203:204, 1/1S/263:265, 1/1S/289:293 | No text annotation | ||
| J5_3J6Y_004 | 1/1S/124:143, 1/1S/172:182, 1/1S/203:204, 1/1S/263:267, 1/1S/288:293 | No text annotation | ||
| J5_3J6Y_005 | 1/1S/636:641, 1/1S/693:698, 1/1S/740:744, 1/1S/807:817, 1/1S/854:860 | No text annotation | ||
| J5_3J6Y_006 | 1/2S/20:22, 1/8S/35:42, 1/8S/102:107, 1/8S/115:116, 1/8S/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_3J6Y_007 | 1/2S/658:663, 1/2S/799:802, 1/2S/941:944, 1/2S/1375:1376, 1/2S/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_3J6Y_008 | 1/2S/675:678, 1/2S/702:706, 1/2S/713:721, 1/2S/749:751, 1/2S/782:787 | No text annotation | homologous J5_8C3A_003 NA | |
| J5_3J6Y_009 | 1/2S/1492:1496, 1/2S/1520:1531, 1/2S/1591:1595, 1/2S/1612:1615, 1/2S/1829:1836 | No text annotation | ||
| J5_3J6Y_010 | 1/2S/1906:1914, 1/2S/1938:1939, 1/2S/2109:2110, 1/2S/2114:2122, 1/2S/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_62523.6 | |
| J5_3J6Y_011 | 1/2S/2399:2406, 1/2S/2815:2823, 1/2S/2867:2875, 1/2S/2952:2957, 1/2S/2975:2980 | No text annotation | ||
| J5_3J6Y_012 | 1/2S/2416:2419, 1/2S/2611:2614, 1/2S/2627:2628, 1/2S/2650:2651, 1/2S/2798:2804 | No text annotation | homologous J5_8C3A_006 NA | |
| J6_3J6Y_003 | 1/2S/22:27, 1/2S/58:68, 1/2S/75:79, 1/2S/106:110, 1/2S/321:331, 1/8S/32:35 | No text annotation | ||
| J6_3J6Y_002 | 1/2S/2416:2419, 1/2S/2611:2614, 1/2S/2627:2628, 1/2S/2650:2653, 1/2S/2754:2765, 1/2S/2793:2804 | No text annotation | ||
| J7_3J6Y_002 | 1/2S/949:954, 1/2S/967:968, 1/2S/1114:1117, 1/2S/1141:1146, 1/2S/1157:1161, 1/2S/1338:1339, 1/2S/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3J6Y_021 | No text annotation | ||
| J3_3J6Y_041 | No text annotation | ||
| J3_3J6Y_026 | No text annotation | ||
| J3_3J6Y_030 | No text annotation | ||
| J4_3J6Y_006 | No text annotation | ||
| J6_3J6Y_001 | No text annotation | ||
| J7_3J6Y_001 | No text annotation |
Coloring options: