Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3J6Y_0011/1S/7:17No text annotation
Not in a motif group
homologous
HL_4V88_186
HL_89881.2
HL_3J6Y_0021/1S/70:81No text annotation
Not in a motif group
geometric
HL_7A0S_011
HL_70546.1
HL_3J6Y_0031/1S/154:160Other HL
Not in a motif group
homologous
HL_4V88_188
HL_76539.5
HL_3J6Y_0041/1S/190:195No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98984.4
HL_3J6Y_0051/1S/230:235No text annotation
Not in a motif group
HL_3J6Y_0061/1S/243:250T-loop with 1 bulged base
Not in a motif group
homologous
HL_4V88_191
HL_56241.1
HL_3J6Y_0071/1S/276:279No text annotation
Not in a motif group
geometric
HL_5TBW_071
HL_53837.2
HL_3J6Y_0081/1S/330:338No text annotation
Not in a motif group
homologous
HL_4V88_193
HL_69023.2
HL_3J6Y_0091/1S/367:374No text annotation
Not in a motif group
geometric
HL_361D_002
HL_90617.3
HL_3J6Y_0101/1S/393:404No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_84288.1
HL_3J6Y_0111/1S/414:419UNCG
Not in a motif group
homologous
HL_4V88_196
HL_03562.2
HL_3J6Y_0121/1S/450:456No text annotation
Not in a motif group
homologous
HL_4V88_197
HL_26380.1
HL_3J6Y_0131/1S/491:496No text annotation
Not in a motif group
homologous
HL_4V88_198
HL_91104.1
HL_3J6Y_0141/1S/520:532No text annotation
Not in a motif group
geometric
HL_4V88_199
HL_06285.3
HL_3J6Y_0151/1S/569:574Other HL
Not in a motif group
homologous
HL_4V88_200
HL_53845.3
HL_3J6Y_0161/1S/703:735No text annotation
Not in a motif group
HL_3J6Y_0171/1S/764:772No text annotation
Not in a motif group
homologous
HL_4V88_203
HL_46766.2
HL_3J6Y_0181/1S/777:783No text annotation
Not in a motif group
HL_3J6Y_0191/1S/829:843No text annotation
Not in a motif group
homologous
HL_4V88_205
HL_96598.1
HL_3J6Y_0201/1S/900:909No text annotation
Not in a motif group
homologous
HL_4V88_206
HL_12326.1
HL_3J6Y_0211/1S/937:942Other HL
Not in a motif group
homologous
HL_4V88_207
HL_87030.2
HL_3J6Y_0221/1S/997:1007No text annotation
Not in a motif group
homologous
HL_4V88_208
HL_12326.1
HL_3J6Y_0231/1S/1055:1064No text annotation
Not in a motif group
HL_3J6Y_0241/1S/1084:1089Other HL
Not in a motif group
homologous
HL_4V88_210
HL_35490.2
HL_3J6Y_0251/1S/1121:1126GNRA
Not in a motif group
homologous
HL_4V88_211
HL_35490.2
HL_3J6Y_0261/1S/1188:1197No text annotation
Not in a motif group
homologous
HL_4V88_212
HL_73530.2
HL_3J6Y_0271/1S/1238:1247No text annotation
Not in a motif group
homologous
HL_4V88_213
HL_53597.4
HL_3J6Y_0281/1S/1296:1301GNRA
Not in a motif group
homologous
HL_4V88_214
HL_35490.2
HL_3J6Y_0291/1S/1309:1316No text annotation
Not in a motif group
homologous
HL_4V88_215
HL_71554.2
HL_3J6Y_0301/1S/1359:1364No text annotation
Not in a motif group
homologous
HL_4V88_216
HL_61849.1
HL_3J6Y_0311/1S/1396:1402No text annotation
Not in a motif group
homologous
HL_4V88_217
HL_35490.2
HL_3J6Y_0321/1S/1501:1506GNRA
Not in a motif group
homologous
HL_4V88_218
HL_35490.2
HL_3J6Y_0331/1S/1550:1561No text annotation
Not in a motif group
homologous
HL_4V88_219
HL_22554.1
HL_3J6Y_0341/1S/1594:1602No text annotation
Not in a motif group
homologous
HL_4V88_220
HL_75828.1
HL_3J6Y_0351/1S/1687:1714No text annotation
Not in a motif group
HL_3J6Y_0361/1S/1778:1783Other HL
Not in a motif group
homologous
HL_4V88_222
HL_16173.1
HL_3J6Y_0371/2S/38:45No text annotation
Not in a motif group
homologous
HL_8C3A_001
HL_06192.2
HL_3J6Y_0381/2S/69:74No text annotation
Not in a motif group
homologous
HL_5TBW_002
HL_02862.2
HL_3J6Y_0391/2S/90:96No text annotation
Not in a motif group
homologous
HL_5TBW_003
HL_67216.7
HL_3J6Y_0401/2S/132:136No text annotation
Not in a motif group
homologous
HL_8C3A_004
HL_98426.1
HL_3J6Y_0411/2S/194:201No text annotation
Not in a motif group
homologous
HL_8C3A_005
HL_41998.1
HL_3J6Y_0421/2S/208:212No text annotation
Not in a motif group
homologous
HL_5TBW_006
HL_98984.4
HL_3J6Y_0431/2S/216:224No text annotation
Not in a motif group
homologous
HL_5TBW_007
HL_08002.9
HL_3J6Y_0441/2S/278:287No text annotation
Not in a motif group
homologous
HL_5TBW_008
HL_71554.2
HL_3J6Y_0451/2S/303:312No text annotation
Not in a motif group
homologous
HL_5TBW_009
HL_12078.4
HL_3J6Y_0461/2S/357:362Other HL
Not in a motif group
homologous
HL_5TBW_010
HL_35490.2
HL_3J6Y_0471/2S/382:387GNRA
Not in a motif group
homologous
HL_5TBW_011
HL_35490.2
HL_3J6Y_0481/2S/542:549No text annotation
Not in a motif group
HL_3J6Y_0491/2S/599:604GNRA
Not in a motif group
homologous
HL_5TBW_013
HL_35490.2
HL_3J6Y_0501/2S/640:649No text annotation
Not in a motif group
homologous
HL_8C3A_014
HL_41998.1
HL_3J6Y_0511/2S/687:693No text annotation
Not in a motif group
geometric
HL_5J7L_151
HL_90617.3
HL_3J6Y_0521/2S/707:712No text annotation
Not in a motif group
homologous
HL_8C3A_016
HL_35490.2
HL_3J6Y_0531/2S/732:737GNRA
Not in a motif group
homologous
HL_5TBW_017
HL_35490.2
HL_3J6Y_0541/2S/763:768No text annotation
Not in a motif group
homologous
HL_5TBW_018
HL_34168.2
HL_3J6Y_0551/2S/844:849No text annotation
Not in a motif group
homologous
HL_8C3A_019
HL_35490.2
HL_3J6Y_0561/2S/876:885No text annotation
Not in a motif group
homologous
HL_5TBW_020
HL_39334.6
HL_3J6Y_0571/2S/910:918No text annotation
Not in a motif group
homologous
HL_8C3A_021
HL_33817.1
HL_3J6Y_0581/2S/958:963No text annotation
Not in a motif group
homologous
HL_8C3A_022
HL_96598.1
HL_3J6Y_0591/2S/1023:1029GNRA
Not in a motif group
homologous
HL_5TBW_023
HL_35490.2
HL_3J6Y_0601/2S/1076:1083No text annotation
Not in a motif group
geometric
HL_5TBW_024
HL_71554.2
HL_3J6Y_0611/2S/1126:1132No text annotation
Not in a motif group
homologous
HL_8C3A_025
HL_35490.2
HL_3J6Y_0621/2S/1148:1155No text annotation
Not in a motif group
homologous
HL_8C3A_026
HL_64430.2
HL_3J6Y_0631/2S/1239:1249No text annotation
Not in a motif group
homologous
HL_8C3A_027
HL_07145.2
HL_3J6Y_0641/2S/1267:1274No text annotation
Not in a motif group
homologous
HL_8C3A_028
HL_84085.2
HL_3J6Y_0651/2S/1347:1357No text annotation
Not in a motif group
homologous
HL_5TBW_029
HL_89098.2
HL_3J6Y_0661/2S/1403:1408GNRA
Not in a motif group
homologous
HL_5TBW_030
HL_35490.2
HL_3J6Y_0671/2S/1462:1470No text annotation
Not in a motif group
homologous
HL_8C3A_031
HL_41998.1
HL_3J6Y_0681/2S/1506:1512No text annotation
Not in a motif group
homologous
HL_8C3A_032
HL_46680.1
HL_3J6Y_0691/2S/1544:1549No text annotation
Not in a motif group
homologous
HL_8C3A_033
HL_76539.5
HL_3J6Y_0701/2S/1566:1572No text annotation
Not in a motif group
HL_3J6Y_0711/2S/1599:1608No text annotation
Not in a motif group
homologous
HL_8C3A_035
HL_69023.2
HL_3J6Y_0721/2S/1634:1639GNRA
Not in a motif group
homologous
HL_5TBW_036
HL_35490.2
HL_3J6Y_0731/2S/1680:1688No text annotation
Not in a motif group
homologous
HL_8C3A_037
HL_84827.1
HL_3J6Y_0741/2S/1719:1725No text annotation
Not in a motif group
homologous
HL_5TBW_038
HL_86373.3
HL_3J6Y_0751/2S/1759:1766No text annotation
Not in a motif group
geometric
HL_4V9F_003
HL_52841.1
HL_3J6Y_0761/2S/1792:1796No text annotation
Not in a motif group
homologous
HL_5TBW_040
HL_38927.5
HL_3J6Y_0771/2S/1844:1851No text annotation
Not in a motif group
homologous
HL_8C3A_041
HL_64430.2
HL_3J6Y_0781/2S/1861:1869No text annotation
Not in a motif group
geometric
HL_5J7L_012
HL_84085.2
HL_3J6Y_0791/2S/1923:1928No text annotation
Not in a motif group
homologous
HL_8C3A_043
HL_03562.2
HL_3J6Y_0821/2S/2110:2114No text annotation
Not in a motif group
homologous
HL_8C3A_045
HL_86735.1
HL_3J6Y_0831/2S/2135:2145No text annotation
Not in a motif group
homologous
HL_5TBW_046
HL_43613.5
HL_3J6Y_0841/2S/2164:2170No text annotation
Not in a motif group
homologous
HL_8C3A_047
HL_35490.2
HL_3J6Y_0851/2S/2220:2225Other HL
Not in a motif group
homologous
HL_5TBW_048
HL_35490.2
HL_3J6Y_0861/2S/2253:2263No text annotation
Not in a motif group
homologous
HL_5TBW_049
HL_71924.2
HL_3J6Y_0871/2S/2292:2300No text annotation
Not in a motif group
homologous
HL_8C3A_050
HL_51824.1
HL_3J6Y_0881/2S/2369:2378No text annotation
Not in a motif group
homologous
HL_8C3A_051
HL_90642.6
HL_3J6Y_0891/2S/2463:2492No text annotation
Not in a motif group
HL_3J6Y_0901/2S/2534:2545No text annotation
Not in a motif group
HL_3J6Y_0911/2S/2568:2573No text annotation
Not in a motif group
geometric
HL_5TBW_022
HL_01057.2
HL_3J6Y_0921/2S/2616:2624No text annotation
Not in a motif group
homologous
HL_8C3A_055
HL_53171.2
HL_3J6Y_0931/2S/2633:2645No text annotation
Not in a motif group
homologous
HL_5TBW_055
HL_19870.6
HL_3J6Y_0941/2S/2673:2681No text annotation
Not in a motif group
homologous
HL_8C3A_057
HL_76406.4
HL_3J6Y_0951/2S/2693:2700No text annotation
Not in a motif group
homologous
HL_5TBW_057
HL_12078.4
HL_3J6Y_0961/2S/2724:2732No text annotation
Not in a motif group
homologous
HL_8C3A_059
HL_92229.2
HL_3J6Y_0971/2S/2744:2749No text annotation
Not in a motif group
homologous
HL_8C3A_060
HL_35490.2
HL_3J6Y_0981/2S/2776:2784No text annotation
Not in a motif group
homologous
HL_5TBW_060
HL_96598.1
HL_3J6Y_0991/2S/2840:2848No text annotation
Not in a motif group
homologous
HL_5TBW_061
HL_06192.2
HL_3J6Y_1001/2S/2897:2904No text annotation
Not in a motif group
homologous
HL_5TBW_062
HL_91104.1
HL_3J6Y_1011/2S/2920:2926No text annotation
Not in a motif group
homologous
HL_8C3A_064
HL_43656.2
HL_3J6Y_1021/2S/2963:2968GNRA
Not in a motif group
homologous
HL_5TBW_064
HL_35490.2
HL_3J6Y_1031/2S/3025:3030No text annotation
Not in a motif group
homologous
HL_8C3A_066
HL_35490.2
HL_3J6Y_1041/2S/3067:3074No text annotation
Not in a motif group
HL_3J6Y_1051/2S/3110:3124No text annotation
Not in a motif group
homologous
HL_8C3A_068
HL_56677.7
HL_3J6Y_1061/2S/3194:3197No text annotation
Not in a motif group
homologous
HL_5TBW_068
HL_98426.1
HL_3J6Y_1071/2S/3240:3247No text annotation
Not in a motif group
homologous
HL_5TBW_069
HL_26380.1
HL_3J6Y_1081/2S/3303:3311No text annotation
Not in a motif group
homologous
HL_8C3A_071
HL_64690.1
HL_3J6Y_1091/2S/3350:3353No text annotation
Not in a motif group
geometric
HL_4V88_192
HL_53837.2
HL_3J6Y_1101/5S/36:41No text annotation
Not in a motif group
homologous
HL_5TBW_185
HL_87939.2
HL_3J6Y_1111/5S/88:93GNRA
Not in a motif group
homologous
HL_4V9F_072
HL_35490.2
HL_3J6Y_1121/8S/47:56No text annotation
Not in a motif group
geometric
HL_7A0S_001
HL_99167.2
HL_3J6Y_1131/8S/69:89No text annotation
Not in a motif group
HL_3J6Y_1141/8S/108:114No text annotation
Not in a motif group
homologous
HL_5TBW_075
HL_53619.1
HL_3J6Y_1151/8S/124:129No text annotation
Not in a motif group
homologous
HL_5TBW_076
HL_96851.2

Problematic loops

#loop idProblemSequence
HL_3J6Y_080No text annotation
HL_3J6Y_081No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3J6Y_0011/1S/24:26,
1/1S/600:601
Single bulged C
Not in a motif group
homologous
IL_4V88_384
IL_61258.12
IL_3J6Y_0021/1S/35:37,
1/1S/471:473
UC cWW
Not in a motif group
geometric
IL_4V88_385
IL_70707.2
IL_3J6Y_0031/1S/37:41,
1/1S/466:471
No text annotation
Not in a motif group
geometric
IL_4V88_386
IL_41507.1
IL_3J6Y_0041/1S/42:48,
1/1S/431:433
No text annotation
Not in a motif group
geometric
IL_4V88_387
IL_33912.1
IL_3J6Y_0051/1S/50:52,
1/1S/428:429
Minor groove platform
Not in a motif group
homologous
IL_4V88_388
IL_80097.1
IL_3J6Y_0061/1S/58:63,
1/1S/87:89
No text annotation
Not in a motif group
homologous
IL_4V88_389
IL_95004.1
IL_3J6Y_0071/1S/64:69,
1/1S/82:86
No text annotation
Not in a motif group
homologous
IL_4V88_390
IL_77691.2
IL_3J6Y_0081/1S/109:112,
1/1S/302:305
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_391
IL_30621.4
IL_3J6Y_0091/1S/113:116,
1/1S/300:301
Multiple bulged bases
Not in a motif group
homologous
IL_4V88_392
IL_44546.1
IL_3J6Y_0101/1S/117:122,
1/1S/295:299
No text annotation
Not in a motif group
homologous
IL_4V88_393
IL_64181.2
IL_3J6Y_0111/1S/144:149,
1/1S/165:171
tWH-tWH-tHW-tHW
Not in a motif group
geometric
IL_4LFB_009
IL_39753.1
IL_3J6Y_0121/1S/150:152,
1/1S/162:164
Isolated cWH basepair
Not in a motif group
geometric
IL_5F5F_003
IL_70707.2
IL_3J6Y_0131/1S/186:189,
1/1S/196:199
Double sheared
Not in a motif group
homologous
IL_4V88_396
IL_09705.10
IL_3J6Y_0141/1S/204:206,
1/1S/259:263
Major groove platform with extra cWW
Not in a motif group
homologous
IL_4V88_397
IL_05564.2
IL_3J6Y_0151/1S/206:208,
1/1S/257:259
No text annotation
Not in a motif group
geometric
IL_5VCI_001
IL_86319.2
IL_3J6Y_0161/1S/265:267,
1/1S/288:289
Single bulged A
Not in a motif group
homologous
IL_4V88_399
IL_37497.6
IL_3J6Y_0171/1S/270:273,
1/1S/283:285
No text annotation
Not in a motif group
homologous
IL_4V88_400
IL_47298.1
IL_3J6Y_0181/1S/275:276,
1/1S/279:281
Single bulged U
Not in a motif group
geometric
IL_4V88_401
IL_83039.16
IL_3J6Y_0191/1S/311:316,
1/1S/348:355
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4V88_402
IL_45067.2
IL_3J6Y_0201/1S/317:323,
1/1S/345:347
No text annotation
Not in a motif group
IL_3J6Y_0211/1S/363:365,
1/1S/376:381
No text annotation
Not in a motif group
homologous
IL_4V88_404
IL_11347.1
IL_3J6Y_0221/1S/389:391,
1/1S/406:408
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_405
IL_70707.2
IL_3J6Y_0231/1S/411:413,
1/1S/420:422
Isolated near basepair
Not in a motif group
homologous
IL_4V88_406
IL_52767.4
IL_3J6Y_0241/1S/439:441,
1/1S/463:464
Single bulged U
Not in a motif group
geometric
IL_4LFB_014
IL_83039.16
IL_3J6Y_0251/1S/443:447,
1/1S/460:461
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_3J6Y_0261/1S/447:448,
1/1S/458:460
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.3
IL_3J6Y_0271/1S/480:483,
1/1S/504:508
No text annotation
Not in a motif group
IL_3J6Y_0281/1S/517:518,
1/1S/533:535
Minor groove platform
Not in a motif group
geometric
IL_4V88_388
IL_80097.1
IL_3J6Y_0291/1S/518:520,
1/1S/532:533
Minor groove platform
Not in a motif group
homologous
IL_4V88_412
IL_80097.1
IL_3J6Y_0301/1S/550:557,
1/1S/587:588
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4V88_413
IL_15861.7
IL_3J6Y_0311/1S/557:559,
1/1S/586:587
Single bulged U
Not in a motif group
geometric
IL_5J7L_046
IL_83039.16
IL_3J6Y_0321/1S/562:568,
1/1S/575:583
No text annotation
Not in a motif group
homologous
IL_4V88_415
IL_55871.1
IL_3J6Y_0331/1S/616:622,
1/1S/1104:1105
No text annotation
Not in a motif group
homologous
IL_4V88_416
IL_69996.1
IL_3J6Y_0341/1S/624:626,
1/1S/973:975
No text annotation
Not in a motif group
homologous
IL_4V88_417
IL_86319.2
IL_3J6Y_0351/1S/627:631,
1/1S/968:972
tSH-tHW-tHS
Not in a motif group
homologous
IL_4V88_418
IL_17136.1
IL_3J6Y_0361/1S/646:648,
1/1S/686:688
No text annotation
Not in a motif group
homologous
IL_4V88_419
IL_86319.2
IL_3J6Y_0371/1S/651:658,
1/1S/676:683
No text annotation
Not in a motif group
IL_3J6Y_0381/1S/746:747,
1/1S/802:805
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4V88_423
IL_09061.8
IL_3J6Y_0391/1S/747:750,
1/1S/799:802
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_3TZR_003
IL_30621.4
IL_3J6Y_0401/1S/751:759,
1/1S/791:798
No text annotation
Not in a motif group
homologous
IL_4V88_425
IL_69091.1
IL_3J6Y_0411/1S/817:824,
1/1S/848:854
No text annotation
Not in a motif group
IL_3J6Y_0421/1S/865:866,
1/1S/962:965
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_6N5P_003
IL_50694.2
IL_3J6Y_0431/1S/868:870,
1/1S/957:960
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_3TD0_002
IL_43275.1
IL_3J6Y_0441/1S/871:873,
1/1S/954:956
No text annotation
Not in a motif group
geometric
IL_5TBW_068
IL_86319.2
IL_3J6Y_0451/1S/874:878,
1/1S/950:953
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_431
IL_30621.4
IL_3J6Y_0461/1S/886:888,
1/1S/924:926
No text annotation
Not in a motif group
geometric
IL_3HHN_004
IL_86319.2
IL_3J6Y_0471/1S/893:899,
1/1S/910:919
No text annotation
Not in a motif group
homologous
IL_8C3A_440
IL_22252.1
IL_3J6Y_0481/1S/985:990,
1/1S/1014:1016
Other IL
Not in a motif group
geometric
IL_4V88_435
IL_22046.1
IL_3J6Y_0491/1S/990:994,
1/1S/1010:1014
tSH-tHW-tHS
Not in a motif group
homologous
IL_4V88_436
IL_17136.1
IL_3J6Y_0501/1S/1034:1036,
1/1S/1095:1101
No text annotation
Not in a motif group
homologous
IL_4V88_437
IL_19557.3
IL_3J6Y_0511/1S/1041:1044,
1/1S/1074:1077
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_438
IL_30621.4
IL_3J6Y_0521/1S/1051:1053,
1/1S/1066:1067
Single bulged U
Not in a motif group
homologous
IL_4V88_439
IL_83039.16
IL_3J6Y_0531/1S/1111:1118,
1/1S/1129:1134
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4V88_440
IL_24606.2
IL_3J6Y_0541/1S/1146:1147,
1/1S/1630:1632
Single bulged A
Not in a motif group
homologous
IL_4V88_441
IL_37497.6
IL_3J6Y_0551/1S/1149:1151,
1/1S/1627:1628
Single bulged G
Not in a motif group
homologous
IL_4V88_442
IL_00225.3
IL_3J6Y_0561/1S/1157:1160,
1/1S/1617:1621
C-loop
Not in a motif group
homologous
IL_4V88_443
IL_63596.6
IL_3J6Y_0571/1S/1173:1175,
1/1S/1464:1466
No text annotation
Not in a motif group
homologous
IL_4V88_444
IL_86319.2
IL_3J6Y_0581/1S/1178:1179,
1/1S/1459:1461
Minor groove platform
Not in a motif group
homologous
IL_4V88_445
IL_42622.4
IL_3J6Y_0591/1S/1213:1215,
1/1S/1448:1450
CC cWW
Not in a motif group
geometric
IL_4J39_001
IL_86319.2
IL_3J6Y_0601/1S/1224:1230,
1/1S/1257:1259
No text annotation
Not in a motif group
IL_3J6Y_0611/1S/1230:1233,
1/1S/1252:1257
No text annotation
Not in a motif group
IL_3J6Y_0621/1S/1234:1237,
1/1S/1248:1251
No text annotation
Not in a motif group
IL_3J6Y_0631/1S/1268:1270,
1/1S/1440:1441
Single bulged U
Not in a motif group
homologous
IL_4V88_449
IL_83039.16
IL_3J6Y_0641/1S/1272:1276,
1/1S/1436:1438
Isolated cWS basepair
Not in a motif group
geometric
IL_4LFB_044
IL_76319.2
IL_3J6Y_0651/1S/1276:1278,
1/1S/1430:1436
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_4V88_451
IL_92788.2
IL_3J6Y_0661/1S/1280:1281,
1/1S/1426:1428
Single bulged A
Not in a motif group
homologous
IL_4V88_452
IL_37497.6
IL_3J6Y_0671/1S/1290:1292,
1/1S/1323:1325
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_453
IL_70707.2
IL_3J6Y_0681/1S/1306:1308,
1/1S/1317:1318
Minor groove platform
Not in a motif group
geometric
IL_5TBW_039
IL_42622.4
IL_3J6Y_0691/1S/1339:1342,
1/1S/1383:1385
No text annotation
Not in a motif group
homologous
IL_4V88_455
IL_27844.2
IL_3J6Y_0701/1S/1345:1348,
1/1S/1377:1380
Minor groove platform
Not in a motif group
homologous
IL_4V88_456
IL_76458.1
IL_3J6Y_0711/1S/1352:1354,
1/1S/1369:1373
No text annotation
Not in a motif group
homologous
IL_4V88_457
IL_86319.2
IL_3J6Y_0721/1S/1389:1391,
1/1S/1407:1412
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4V88_458
IL_58032.1
IL_3J6Y_0731/1S/1488:1494,
1/1S/1513:1518
No text annotation
Not in a motif group
homologous
IL_4V88_460
IL_75461.4
IL_3J6Y_0741/1S/1495:1498,
1/1S/1509:1512
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_461
IL_30621.4
IL_3J6Y_0751/1S/1540:1545,
1/1S/1566:1571
No text annotation
Not in a motif group
geometric
IL_4V88_462
IL_19954.2
IL_3J6Y_0761/1S/1636:1638,
1/1S/1764:1767
No text annotation
Not in a motif group
homologous
IL_4V88_463
IL_36143.3
IL_3J6Y_0771/1S/1638:1641,
1/1S/1760:1764
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_3J6Y_0781/1S/1642:1644,
1/1S/1757:1759
No text annotation
Not in a motif group
homologous
IL_4V88_465
IL_86319.2
IL_3J6Y_0791/1S/1644:1647,
1/1S/1753:1757
No text annotation
Not in a motif group
IL_3J6Y_0801/1S/1650:1652,
1/1S/1748:1750
AA cWW
Not in a motif group
homologous
IL_4V88_467
IL_86319.2
IL_3J6Y_0811/1S/1653:1656,
1/1S/1744:1747
Double sheared
Not in a motif group
geometric
IL_4V88_468
IL_09705.10
IL_3J6Y_0821/1S/1656:1659,
1/1S/1742:1744
Isolated cWS basepair
Not in a motif group
geometric
IL_4TS2_003
IL_52767.4
IL_3J6Y_0831/1S/1665:1667,
1/1S/1734:1736
No text annotation
Not in a motif group
homologous
IL_4V88_470
IL_70707.2
IL_3J6Y_0841/1S/1669:1672,
1/1S/1729:1732
Double sheared
Not in a motif group
geometric
IL_1SAQ_002
IL_09705.10
IL_3J6Y_0851/1S/1672:1674,
1/1S/1727:1729
No text annotation
Not in a motif group
homologous
IL_4V88_472
IL_86319.2
IL_3J6Y_0861/1S/1675:1678,
1/1S/1723:1726
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4UYK_003
IL_30621.4
IL_3J6Y_0871/1S/1678:1682,
1/1S/1719:1723
Triple sheared
Not in a motif group
homologous
IL_4V88_474
IL_56467.8
IL_3J6Y_0881/2S/3:4,
1/8S/155:156
No text annotation
Not in a motif group
IL_3J6Y_0891/2S/7:8,
1/8S/150:152
Single bulged C
Not in a motif group
homologous
IL_5TBW_002
IL_61258.12
IL_3J6Y_0901/2S/13:15,
1/8S/144:145
No text annotation
Not in a motif group
homologous
IL_8C3A_003
IL_83039.16
IL_3J6Y_0911/2S/27:28,
1/2S/56:58
No text annotation
Not in a motif group
homologous
IL_8C3A_004
IL_76488.4
IL_3J6Y_0921/2S/31:38,
1/2S/45:53
tSH-tHW-tHH-tHS
Not in a motif group
geometric
IL_5TBW_005
IL_35728.2
IL_3J6Y_0931/2S/82:89,
1/2S/97:103
No text annotation
Not in a motif group
homologous
IL_8C3A_006
IL_88613.1
IL_3J6Y_0941/2S/123:124,
1/2S/144:149
No text annotation
Not in a motif group
geometric
IL_5TBW_007
IL_19724.2
IL_3J6Y_0951/2S/125:127,
1/2S/141:143
No text annotation
Not in a motif group
homologous
IL_8C3A_008
IL_86319.2
IL_3J6Y_0961/2S/163:165,
1/2S/257:258
Single stack bend
Not in a motif group
homologous
IL_5TBW_009
IL_76488.4
IL_3J6Y_0971/2S/169:170,
1/2S/248:253
No text annotation
Not in a motif group
homologous
IL_5TBW_010
IL_74684.1
IL_3J6Y_0981/2S/177:179,
1/2S/237:241
Major groove platform with extra pair
Not in a motif group
homologous
IL_5TBW_011
IL_63450.2
IL_3J6Y_0991/2S/189:191,
1/2S/204:205
No text annotation
Not in a motif group
homologous
IL_8C3A_013
IL_83039.16
IL_3J6Y_1001/2S/337:339,
1/8S/25:26
Single bulged A
Not in a motif group
homologous
IL_5TBW_013
IL_37497.6
IL_3J6Y_1011/2S/376:379,
1/2S/390:403
No text annotation
Not in a motif group
homologous
IL_5TBW_014
IL_60992.6
IL_3J6Y_1021/2S/404:410,
1/8S/13:19
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5TBW_015
IL_66414.6
IL_3J6Y_1031/2S/429:431,
1/2S/628:630
No text annotation
Not in a motif group
homologous
IL_5TBW_016
IL_70707.2
IL_3J6Y_1051/2S/511:513,
1/2S/577:580
No text annotation
Not in a motif group
geometric
IL_3ICQ_003
IL_70707.2
IL_3J6Y_1061/2S/517:525,
1/2S/567:573
No text annotation
Not in a motif group
homologous
IL_5TBW_019
IL_23992.1
IL_3J6Y_1071/2S/531:538,
1/2S/553:561
No text annotation
Not in a motif group
homologous
IL_5TBW_020
IL_07703.1
IL_3J6Y_1081/2S/668:670,
1/2S/792:794
No text annotation
Not in a motif group
homologous
IL_8C3A_023
IL_86319.2
IL_3J6Y_1091/2S/680:684,
1/2S/696:700
No text annotation
Not in a motif group
homologous
IL_5TBW_022
IL_74284.1
IL_3J6Y_1101/2S/725:729,
1/2S/740:745
Triple sheared related
Not in a motif group
geometric
IL_4V9F_018
IL_64879.2
IL_3J6Y_1111/2S/752:753,
1/2S/779:781
No text annotation
Not in a motif group
homologous
IL_8C3A_026
IL_37497.6
IL_3J6Y_1121/2S/755:756,
1/2S/775:777
No text annotation
Not in a motif group
homologous
IL_8C3A_027
IL_83039.16
IL_3J6Y_1131/2S/758:763,
1/2S/768:773
No text annotation
Not in a motif group
geometric
IL_5TBW_026
IL_19954.2
IL_3J6Y_1141/2S/803:805,
1/2S/938:940
CC cWW
Not in a motif group
geometric
IL_4KNQ_002
IL_86319.2
IL_3J6Y_1151/2S/805:809,
1/2S/931:938
No text annotation
Not in a motif group
homologous
IL_8C3A_030
IL_17470.6
IL_3J6Y_1161/2S/833:834,
1/2S/859:861
Single bulged G
Not in a motif group
geometric
IL_7A0S_017
IL_00225.3
IL_3J6Y_1171/2S/834:838,
1/2S/855:859
No text annotation
Not in a motif group
homologous
IL_8C3A_033
IL_56467.8
IL_3J6Y_1181/2S/869:872,
1/2S/888:890
No text annotation
Not in a motif group
homologous
IL_8C3A_034
IL_05564.2
IL_3J6Y_1191/2S/873:875,
1/2S/886:887
Single bulged U
Not in a motif group
homologous
IL_5TBW_032
IL_83039.16
IL_3J6Y_1201/2S/907:909,
1/2S/919:923
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_033
IL_90991.6
IL_3J6Y_1211/2S/954:956,
1/2S/965:967
No text annotation
Not in a motif group
homologous
IL_8C3A_037
IL_86319.2
IL_3J6Y_1221/2S/969:970,
1/2S/1111:1113
No text annotation
Not in a motif group
homologous
IL_8C3A_038
IL_76488.4
IL_3J6Y_1231/2S/977:981,
1/2S/1102:1104
No text annotation
Not in a motif group
homologous
IL_5TBW_036
IL_67474.4
IL_3J6Y_1241/2S/983:986,
1/2S/1098:1100
No text annotation
Not in a motif group
geometric
IL_7A0S_092
IL_02284.7
IL_3J6Y_1251/2S/991:997,
1/2S/1052:1058
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_5TBW_038
IL_93830.3
IL_3J6Y_1261/2S/997:999,
1/2S/1049:1052
Major groove platform with extra cWW
Not in a motif group
geometric
IL_3PDR_004
IL_18471.2
IL_3J6Y_1271/2S/999:1004,
1/2S/1046:1049
No text annotation
Not in a motif group
homologous
IL_8C3A_043
IL_02509.1
IL_3J6Y_1281/2S/1006:1009,
1/2S/1041:1044
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5TBW_041
IL_30621.4
IL_3J6Y_1291/2S/1009:1011,
1/2S/1039:1041
No text annotation
Not in a motif group
geometric
IL_5J7L_061
IL_86319.2
IL_3J6Y_1301/2S/1014:1018,
1/2S/1034:1036
No text annotation
Not in a motif group
IL_3J6Y_1311/2S/1069:1071,
1/2S/1087:1089
No text annotation
Not in a motif group
homologous
IL_8C3A_047
IL_86319.2
IL_3J6Y_1321/2S/1074:1076,
1/2S/1083:1084
No text annotation
Not in a motif group
homologous
IL_8C3A_048
IL_00225.3
IL_3J6Y_1331/2S/1120:1122,
1/2S/1136:1138
No text annotation
Not in a motif group
homologous
IL_8C3A_049
IL_86319.2
IL_3J6Y_1341/2S/1167:1171,
1/2S/1328:1332
No text annotation
Not in a motif group
homologous
IL_8C3A_051
IL_89002.2
IL_3J6Y_1351/2S/1173:1180,
1/2S/1325:1326
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_5TBW_049
IL_15861.7
IL_3J6Y_1361/2S/1180:1182,
1/2S/1324:1325
Single bulged U
Not in a motif group
homologous
IL_5TBW_050
IL_83039.16
IL_3J6Y_1371/2S/1187:1194,
1/2S/1314:1319
No text annotation
Not in a motif group
geometric
IL_5TBW_051
IL_27086.1
IL_3J6Y_1381/2S/1194:1205,
1/2S/1299:1314
No text annotation
Not in a motif group
geometric
IL_5TBW_052
IL_53762.1
IL_3J6Y_1391/2S/1207:1209,
1/2S/1296:1297
Single bulged U
Not in a motif group
homologous
IL_5TBW_053
IL_83039.16
IL_3J6Y_1401/2S/1218:1226,
1/2S/1283:1287
No text annotation
Not in a motif group
homologous
IL_8C3A_057
IL_90538.4
IL_3J6Y_1411/2S/1234:1238,
1/2S/1250:1254
No text annotation
Not in a motif group
homologous
IL_8C3A_058
IL_30542.3
IL_3J6Y_1421/2S/1262:1266,
1/2S/1275:1277
Major groove platform with extra cWW
Not in a motif group
geometric
IL_1MMS_002
IL_05564.2
IL_3J6Y_1431/2S/1376:1378,
1/2S/1428:1431
Isolated cWS basepair
Not in a motif group
homologous
IL_5TBW_057
IL_52767.4
IL_3J6Y_1441/2S/1385:1387,
1/2S/1420:1421
Single bulged A
Not in a motif group
homologous
IL_5TBW_058
IL_37497.6
IL_3J6Y_1451/2S/1388:1395,
1/2S/1415:1419
Kink-turn
Not in a motif group
homologous
IL_5TBW_059
IL_70923.2
IL_3J6Y_1461/2S/1398:1400,
1/2S/1411:1412
Single bulged A
Not in a motif group
homologous
IL_5TBW_060
IL_37497.6
IL_3J6Y_1471/2S/1444:1451,
1/2S/2353:2359
8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
Not in a motif group
geometric
IL_4V9F_012
IL_59724.1