3JBU Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3JBU_001 | 1/A/11:23 | No text annotation Not in a motif group | ||
| HL_3JBU_003 | 1/A/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_3JBU_005 | 1/A/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_3JBU_006 | 1/A/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_3JBU_007 | 1/A/319:334 | No text annotation Not in a motif group | ||
| HL_3JBU_008 | 1/A/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_3JBU_009 | 1/A/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_3JBU_010 | 1/A/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_3JBU_012 | 1/A/521:528 | No text annotation Not in a motif group | ||
| HL_3JBU_013 | 1/A/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_3JBU_015 | 1/A/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_3JBU_018 | 1/A/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_3JBU_019 | 1/A/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_3JBU_020 | 1/A/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_3JBU_021 | 1/A/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_3JBU_022 | 1/A/1028:1033 | UNCG Not in a motif group | geometric HL_1I6U_001 HL_03562.2 | |
| HL_3JBU_023 | 1/A/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_3JBU_024 | 1/A/1089:1096 | No text annotation Not in a motif group | geometric HL_5J7L_024 HL_71554.2 | |
| HL_3JBU_025 | 1/A/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_3JBU_027 | 1/A/1265:1270 | GNRA Not in a motif group | geometric HL_5J7L_027 HL_42097.1 | |
| HL_3JBU_028 | 1/A/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_89380.2 | |
| HL_3JBU_029 | 1/A/1354:1368 | No text annotation Not in a motif group | ||
| HL_3JBU_032 | 1/a/38:44 | No text annotation Not in a motif group | geometric HL_5J7L_203 HL_87939.1 | |
| HL_3JBU_033 | 1/a/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
| HL_3JBU_034 | 1/b/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
| HL_3JBU_035 | 1/b/87:94 | No text annotation Not in a motif group | ||
| HL_3JBU_036 | 1/b/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_3JBU_037 | 1/b/137:142 | No text annotation Not in a motif group | ||
| HL_3JBU_038 | 1/b/157:169 | No text annotation Not in a motif group | ||
| HL_3JBU_039 | 1/b/194:201 | No text annotation Not in a motif group | homologous HL_4WF9_006 HL_06192.2 | |
| HL_3JBU_040 | 1/b/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_3JBU_041 | 1/b/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_3JBU_042 | 1/b/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_3JBU_043 | 1/b/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_3JBU_044 | 1/b/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_3JBU_045 | 1/b/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
| HL_3JBU_046 | 1/b/409:418 | No text annotation Not in a motif group | geometric HL_4V9F_061 HL_12078.2 | |
| HL_3JBU_047 | 1/b/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_3JBU_048 | 1/b/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
| HL_3JBU_049 | 1/b/543:550 | No text annotation Not in a motif group | ||
| HL_3JBU_050 | 1/b/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_150 HL_89380.2 | |
| HL_3JBU_051 | 1/b/611:617 | No text annotation Not in a motif group | ||
| HL_3JBU_052 | 1/b/629:634 | No text annotation Not in a motif group | ||
| HL_3JBU_053 | 1/b/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
| HL_3JBU_054 | 1/b/710:721 | No text annotation Not in a motif group | ||
| HL_3JBU_055 | 1/b/744:753 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_3JBU_056 | 1/b/779:785 | No text annotation Not in a motif group | ||
| HL_3JBU_057 | 1/b/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_3JBU_058 | 1/b/883:893 | No text annotation Not in a motif group | ||
| HL_3JBU_059 | 1/b/952:965 | No text annotation Not in a motif group | ||
| HL_3JBU_060 | 1/b/978:985 | No text annotation Not in a motif group | homologous HL_7A0S_027 HL_64430.2 | |
| HL_3JBU_061 | 1/b/1063:1075 | No text annotation Not in a motif group | ||
| HL_3JBU_062 | 1/b/1092:1099 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_3JBU_063 | 1/b/1170:1179 | No text annotation Not in a motif group | ||
| HL_3JBU_064 | 1/b/1222:1227 | No text annotation Not in a motif group | homologous HL_7A0S_031 HL_87030.2 | |
| HL_3JBU_065 | 1/b/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_3JBU_066 | 1/b/1324:1330 | No text annotation Not in a motif group | homologous HL_7A0S_033 HL_46680.1 | |
| HL_3JBU_067 | 1/b/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_3JBU_068 | 1/b/1388:1399 | No text annotation Not in a motif group | ||
| HL_3JBU_069 | 1/b/1449:1462 | No text annotation Not in a motif group | ||
| HL_3JBU_070 | 1/b/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_3JBU_071 | 1/b/1526:1546 | No text annotation Not in a motif group | ||
| HL_3JBU_072 | 1/b/1565:1568 | No text annotation Not in a motif group | ||
| HL_3JBU_073 | 1/b/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_3JBU_074 | 1/b/1627:1639 | No text annotation Not in a motif group | ||
| HL_3JBU_075 | 1/b/1691:1696 | UNCG Not in a motif group | geometric HL_4JF2_003 HL_03562.2 | |
| HL_3JBU_076 | 1/b/1728:1731 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_98426.1 | |
| HL_3JBU_077 | 1/b/1752:1756 | No text annotation Not in a motif group | homologous HL_7A0S_044 HL_76539.2 | |
| HL_3JBU_078 | 1/b/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_3JBU_079 | 1/b/1804:1813 | No text annotation Not in a motif group | ||
| HL_3JBU_080 | 1/b/1868:1873 | Other HL Not in a motif group | geometric HL_4V88_207 HL_87030.2 | |
| HL_3JBU_081 | 1/b/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_3JBU_082 | 1/b/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_3JBU_083 | 1/b/2027:2036 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_3JBU_084 | 1/b/2137:2154 | No text annotation Not in a motif group | ||
| HL_3JBU_085 | 1/b/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_3JBU_086 | 1/b/2248:2256 | No text annotation Not in a motif group | homologous HL_4WF9_049 HL_53171.2 | |
| HL_3JBU_087 | 1/b/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
| HL_3JBU_088 | 1/b/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_3JBU_089 | 1/b/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_3JBU_090 | 1/b/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
| HL_3JBU_091 | 1/b/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_3JBU_092 | 1/b/2471:2479 | No text annotation Not in a motif group | homologous HL_7A0S_059 HL_06192.2 | |
| HL_3JBU_093 | 1/b/2525:2538 | No text annotation Not in a motif group | ||
| HL_3JBU_094 | 1/b/2551:2557 | No text annotation Not in a motif group | ||
| HL_3JBU_095 | 1/b/2594:2599 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_3JBU_096 | 1/b/2652:2668 | No text annotation Not in a motif group | ||
| HL_3JBU_097 | 1/b/2698:2709 | No text annotation Not in a motif group | ||
| HL_3JBU_098 | 1/b/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_3JBU_099 | 1/b/2795:2801 | No text annotation Not in a motif group | ||
| HL_3JBU_100 | 1/b/2817:2829 | No text annotation Not in a motif group | ||
| HL_3JBU_101 | 1/b/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 | |
| HL_3JBU_102 | 1/v/13:22 | No text annotation Not in a motif group | ||
| HL_3JBU_103 | 1/v/29:41 | No text annotation Not in a motif group | ||
| HL_3JBU_104 | 1/v/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WT8_217 HL_22280.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3JBU_002 | No text annotation | ||
| HL_3JBU_004 | UNCG | ||
| HL_3JBU_011 | No text annotation | ||
| HL_3JBU_014 | No text annotation | ||
| HL_3JBU_016 | No text annotation | ||
| HL_3JBU_017 | No text annotation | ||
| HL_3JBU_026 | GNRA | ||
| HL_3JBU_030 | No text annotation | ||
| HL_3JBU_031 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3JBU_001 | 1/A/30:33, 1/A/551:553 | No text annotation Not in a motif group | geometric IL_5UNE_009 IL_53251.2 | |
| IL_3JBU_002 | 1/A/44:46, 1/A/395:398 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_3JBU_003 | 1/A/47:52, 1/A/359:361 | No text annotation Not in a motif group | geometric IL_5J7L_003 IL_11178.1 | |
| IL_3JBU_004 | 1/A/54:56, 1/A/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_3JBU_005 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_3JBU_006 | 1/A/67:69, 1/A/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_3JBU_008 | 1/A/75:79, 1/A/90:95 | No text annotation Not in a motif group | ||
| IL_3JBU_009 | 1/A/127:131, 1/A/231:234 | No text annotation Not in a motif group | ||
| IL_3JBU_010 | 1/A/131:137, 1/A/226:231 | No text annotation Not in a motif group | ||
| IL_3JBU_012 | 1/A/242:248, 1/A/276:284 | No text annotation Not in a motif group | ||
| IL_3JBU_013 | 1/A/249:253, 1/A/273:275 | No text annotation Not in a motif group | homologous IL_6CZR_124 IL_38684.1 | |
| IL_3JBU_014 | 1/A/292:293, 1/A/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_3JBU_016 | 1/A/443:445, 1/A/490:491 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_3JBU_017 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_3JBU_018 | 1/A/515:521, 1/A/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_3JBU_019 | 1/A/580:584, 1/A/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_3JBU_020 | 1/A/594:597, 1/A/643:645 | No text annotation Not in a motif group | geometric IL_6CZR_136 IL_05564.2 | |
| IL_3JBU_021 | 1/A/597:599, 1/A/639:643 | 8-nt loop receptor Not in a motif group | geometric IL_6CK5_002 IL_93341.1 | |
| IL_3JBU_022 | 1/A/605:612, 1/A/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
| IL_3JBU_023 | 1/A/654:655, 1/A/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4LFB_027 IL_50694.2 | |
| IL_3JBU_024 | 1/A/658:660, 1/A/745:748 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_3JBU_025 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_3JBU_027 | 1/A/774:778, 1/A/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_3JBU_029 | 1/A/887:895, 1/A/904:910 | 9x7 Sarcin-Ricin with inserted C; G-bulge Not in a motif group | homologous IL_6CZR_146 IL_68633.1 | |
| IL_3JBU_030 | 1/A/922:923, 1/A/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_3JBU_031 | 1/A/925:927, 1/A/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_3JBU_032 | 1/A/933:935, 1/A/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_3JBU_033 | 1/A/953:954, 1/A/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_3JBU_034 | 1/A/993:999, 1/A/1041:1045 | No text annotation Not in a motif group | ||
| IL_3JBU_035 | 1/A/1047:1056, 1/A/1204:1210 | No text annotation Not in a motif group | ||
| IL_3JBU_036 | 1/A/1056:1058, 1/A/1199:1204 | No text annotation Not in a motif group | ||
| IL_3JBU_037 | 1/A/1060:1063, 1/A/1193:1197 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1L9A_005 IL_30621.2 | |
| IL_3JBU_038 | 1/A/1124:1129, 1/A/1143:1149 | No text annotation Not in a motif group | ||
| IL_3JBU_039 | 1/A/1129:1132, 1/A/1142:1143 | Minor groove platform Not in a motif group | geometric IL_5J7L_052 IL_15052.1 | |
| IL_3JBU_040 | 1/A/1254:1258, 1/A/1277:1283 | No text annotation Not in a motif group | ||
| IL_3JBU_041 | 1/A/1259:1265, 1/A/1270:1276 | No text annotation Not in a motif group | ||
| IL_3JBU_042 | 1/A/1303:1308, 1/A/1329:1334 | No text annotation Not in a motif group | ||
| IL_3JBU_051 | 1/a/17:18, 1/a/65:67 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_37497.2 | |
| IL_3JBU_052 | 1/a/23:28, 1/a/56:60 | No text annotation Not in a motif group | homologous IL_7A0S_103 IL_18472.2 | |
| IL_3JBU_053 | 1/a/30:31, 1/a/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | geometric IL_6CZR_137 IL_09061.6 | |
| IL_3JBU_054 | 1/a/32:38, 1/a/44:50 | No text annotation Not in a motif group | ||
| IL_3JBU_055 | 1/a/71:79, 1/a/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 | |
| IL_3JBU_056 | 1/b/24:30, 1/b/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_3JBU_057 | 1/b/36:37, 1/b/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
| IL_3JBU_058 | 1/b/42:44, 1/b/434:437 | No text annotation Not in a motif group | ||
| IL_3JBU_059 | 1/b/81:85, 1/b/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_93699.1 | |
| IL_3JBU_060 | 1/b/86:87, 1/b/94:96 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_3JBU_061 | 1/b/183:184, 1/b/212:214 | Single stack bend Not in a motif group | homologous IL_5J7L_249 IL_76488.2 | |
| IL_3JBU_062 | 1/b/188:194, 1/b/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
| IL_3JBU_063 | 1/b/239:245, 1/b/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_3JBU_064 | 1/b/269:271, 1/b/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_3JBU_065 | 1/b/274:281, 1/b/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_3JBU_066 | 1/b/293:296, 1/b/342:347 | No text annotation Not in a motif group | ||
| IL_3JBU_067 | 1/b/481:484, 1/b/496:509 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.6 | |
| IL_3JBU_068 | 1/b/536:539, 1/b/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_3JBU_069 | 1/b/564:566, 1/b/575:577 | No text annotation Not in a motif group | geometric IL_7A0S_011 IL_95997.1 | |
| IL_3JBU_070 | 1/b/606:610, 1/b/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
| IL_3JBU_071 | 1/b/672:678, 1/b/799:808 | No text annotation Not in a motif group | ||
| IL_3JBU_072 | 1/b/697:698, 1/b/763:765 | No text annotation Not in a motif group | ||
| IL_3JBU_073 | 1/b/702:707, 1/b/724:730 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_3JBU_074 | 1/b/738:740, 1/b/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_3JBU_075 | 1/b/775:777, 1/b/787:791 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.6 | |
| IL_3JBU_076 | 1/b/842:845, 1/b/932:936 | No text annotation Not in a motif group | ||
| IL_3JBU_077 | 1/b/845:851, 1/b/926:932 | No text annotation Not in a motif group | ||
| IL_3JBU_078 | 1/b/856:862, 1/b/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
| IL_3JBU_079 | 1/b/862:863, 1/b/913:915 | Single bulged G Not in a motif group | geometric IL_5J7L_271 IL_00225.2 | |
| IL_3JBU_080 | 1/b/864:868, 1/b/909:912 | C-loop Not in a motif group | homologous IL_7A0S_029 IL_02509.1 | |
| IL_3JBU_081 | 1/b/870:872, 1/b/905:907 | No text annotation Not in a motif group | ||
| IL_3JBU_082 | 1/b/875:879, 1/b/898:902 | No text annotation Not in a motif group | ||
| IL_3JBU_083 | 1/b/879:881, 1/b/895:898 | No text annotation Not in a motif group | ||
| IL_3JBU_084 | 1/b/994:996, 1/b/1159:1160 | No text annotation Not in a motif group | ||
| IL_3JBU_085 | 1/b/998:1002, 1/b/1153:1157 | No text annotation Not in a motif group | ||
| IL_3JBU_086 | 1/b/1004:1013, 1/b/1149:1151 | No text annotation Not in a motif group | ||
| IL_3JBU_087 | 1/b/1017:1024, 1/b/1140:1145 | No text annotation Not in a motif group | ||
| IL_3JBU_088 | 1/b/1024:1030, 1/b/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_3JBU_089 | 1/b/1031:1036, 1/b/1119:1123 | No text annotation Not in a motif group | ||
| IL_3JBU_090 | 1/b/1038:1041, 1/b/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
| IL_3JBU_091 | 1/b/1043:1053, 1/b/1106:1112 | No text annotation Not in a motif group | ||
| IL_3JBU_092 | 1/b/1059:1062, 1/b/1076:1079 | No text annotation Not in a motif group | ||
| IL_3JBU_093 | 1/b/1087:1090, 1/b/1101:1102 | No text annotation Not in a motif group | ||
| IL_3JBU_094 | 1/b/1196:1199, 1/b/1246:1250 | No text annotation Not in a motif group | ||
| IL_3JBU_095 | 1/b/1199:1207, 1/b/1239:1246 | No text annotation Not in a motif group | ||
| IL_3JBU_096 | 1/b/1208:1215, 1/b/1234:1238 | No text annotation Not in a motif group | ||
| IL_3JBU_097 | 1/b/1262:1269, 1/b/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_3JBU_098 | 1/b/1310:1313, 1/b/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_3JBU_099 | 1/b/1319:1323, 1/b/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_3JBU_100 | 1/b/1412:1417, 1/b/1581:1590 | No text annotation Not in a motif group | ||
| IL_3JBU_101 | 1/b/1417:1421, 1/b/1577:1581 | UAA/GAN Not in a motif group | geometric IL_5J7L_295 IL_89002.2 | |
| IL_3JBU_102 | 1/b/1432:1435, 1/b/1557:1561 | No text annotation Not in a motif group | ||
| IL_3JBU_103 | 1/b/1437:1440, 1/b/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7A0S_053 IL_04059.1 | |
| IL_3JBU_104 | 1/b/1468:1472, 1/b/1519:1524 | No text annotation Not in a motif group | ||
| IL_3JBU_105 | 1/b/1472:1479, 1/b/1512:1519 | No text annotation Not in a motif group | ||
| IL_3JBU_106 | 1/b/1481:1482, 1/b/1507:1510 | No text annotation Not in a motif group | ||
| IL_3JBU_107 | 1/b/1484:1491, 1/b/1499:1505 | No text annotation Not in a motif group | ||
| IL_3JBU_108 | 1/b/1651:1656, 1/b/2004:2006 | No text annotation Not in a motif group | ||
| IL_3JBU_109 | 1/b/1660:1665, 1/b/1995:2000 | No text annotation Not in a motif group | ||
| IL_3JBU_110 | 1/b/1666:1669, 1/b/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_50694.2 | |
| IL_3JBU_111 | 1/b/1669:1674, 1/b/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_5J7L_307 IL_82842.2 | |
| IL_3JBU_112 | 1/b/1686:1691, 1/b/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7A0S_063 IL_65969.2 | |
| IL_3JBU_113 | 1/b/1712:1718, 1/b/1742:1746 | No text annotation Not in a motif group | ||
| IL_3JBU_114 | 1/b/1720:1724, 1/b/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.8 | |
| IL_3JBU_115 | 1/b/1727:1728, 1/b/1731:1733 | Single bulged C Not in a motif group | homologous IL_5J7L_311 IL_61258.12 | |
| IL_3JBU_116 | 1/b/1769:1772, 1/b/1979:1983 | No text annotation Not in a motif group | ||
| IL_3JBU_117 | 1/b/1798:1804, 1/b/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_3JBU_118 | 1/b/1837:1841, 1/b/1901:1903 | No text annotation Not in a motif group | ||
| IL_3JBU_119 | 1/b/1841:1842, 1/b/1898:1901 | No text annotation Not in a motif group | ||
| IL_3JBU_120 | 1/b/1864:1867, 1/b/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_3JBU_121 | 1/b/1933:1934, 1/b/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_318 IL_59677.2 | |
| IL_3JBU_122 | 1/b/1934:1947, 1/b/1959:1964 | No text annotation Not in a motif group | ||
| IL_3JBU_123 | 1/b/2050:2052, 1/b/2617:2618 | No text annotation Not in a motif group | ||
| IL_3JBU_124 | 1/b/2053:2056, 1/b/2612:2616 | No text annotation Not in a motif group | ||
| IL_3JBU_125 | 1/b/2067:2069, 1/b/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_3JBU_126 | 1/b/2070:2073, 1/b/2436:2441 | No text annotation Not in a motif group | ||
| IL_3JBU_127 | 1/b/2081:2083, 1/b/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7A0S_077 IL_38958.7 | |
| IL_3JBU_128 | 1/b/2085:2087, 1/b/2232:2234 | No text annotation Not in a motif group | ||
| IL_3JBU_129 | 1/b/2103:2105, 1/b/2184:2186 | No text annotation Not in a motif group | ||
| IL_3JBU_130 | 1/b/2105:2121, 1/b/2177:2184 | No text annotation Not in a motif group | ||
| IL_3JBU_131 | 1/b/2202:2204, 1/b/2220:2221 | No text annotation Not in a motif group | ||
| IL_3JBU_132 | 1/b/2297:2299, 1/b/2317:2321 | No text annotation Not in a motif group | ||
| IL_3JBU_133 | 1/b/2326:2328, 1/b/2387:2389 | No text annotation Not in a motif group | ||
| IL_3JBU_134 | 1/b/2350:2353, 1/b/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_3JBU_135 | 1/b/2401:2403, 1/b/2414:2415 | No text annotation Not in a motif group | ||
| IL_3JBU_136 | 1/b/2454:2455, 1/b/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_3JBU_137 | 1/b/2457:2459, 1/b/2493:2494 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_3JBU_138 | 1/b/2459:2461, 1/b/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_337 IL_92788.2 | |
| IL_3JBU_139 | 1/b/2466:2470, 1/b/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_3JBU_140 | 1/b/2507:2509, 1/b/2579:2582 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 IL_63450.2 | |
| IL_3JBU_141 | 1/b/2509:2512, 1/b/2574:2579 | No text annotation Not in a motif group | geometric IL_3MEI_004 IL_04655.1 | |
| IL_3JBU_142 | 1/b/2512:2513, 1/b/2571:2574 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_3JBU_143 | 1/b/2520:2523, 1/b/2540:2545 | No text annotation Not in a motif group | ||
| IL_3JBU_144 | 1/b/2588:2594, 1/b/2599:2606 | No text annotation Not in a motif group | ||
| IL_3JBU_145 | 1/b/2636:2640, 1/b/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.1 | |
| IL_3JBU_146 | 1/b/2680:2684, 1/b/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_3JBU_147 | 1/b/2687:2691, 1/b/2718:2722 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
| IL_3JBU_148 | 1/b/2694:2696, 1/b/2711:2715 | Isolated cWS basepair Not in a motif group | geometric IL_4TS2_003 IL_52767.2 | |
| IL_3JBU_149 | 1/b/2737:2742, 1/b/2762:2767 | No text annotation Not in a motif group | ||
| IL_3JBU_150 | 1/b/2806:2811, 1/b/2889:2892 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_49460.2 | |
| IL_3JBU_151 | 1/b/2838:2841, 1/b/2876:2880 | No text annotation Not in a motif group | ||
| IL_3JBU_152 | 1/b/2843:2846, 1/b/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | geometric IL_5J7L_353 IL_58764.3 | |
| IL_3JBU_153 | 1/b/2846:2853, 1/b/2864:2870 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3JBU_007 | No text annotation | ||
| IL_3JBU_011 | Minor groove platform | ||
| IL_3JBU_015 | No text annotation | ||
| IL_3JBU_026 | Kink-turn | ||
| IL_3JBU_028 | tSH-tHW-tHS | ||
| IL_3JBU_043 | No text annotation | ||
| IL_3JBU_044 | No text annotation | ||
| IL_3JBU_045 | Decoding loop related | ||
| IL_3JBU_046 | No text annotation | ||
| IL_3JBU_047 | Double sheared | ||
| IL_3JBU_048 | Triple sheared related | ||
| IL_3JBU_049 | No text annotation | ||
| IL_3JBU_050 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3JBU_001 | 1/A/46:47, 1/A/361:367, 1/A/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_3JBU_002 | 1/A/142:144, 1/A/178:198, 1/A/219:221 | No text annotation Not in a motif group | ||
| J3_3JBU_003 | 1/A/586:592, 1/A/647:654, 1/A/754:755 | No text annotation Not in a motif group | ||
| J3_3JBU_004 | 1/A/825:830, 1/A/856:861, 1/A/868:875 | No text annotation Not in a motif group | ||
| J3_3JBU_005 | 1/A/940:946, 1/A/1235:1237, 1/A/1337:1343 | No text annotation Not in a motif group | ||
| J3_3JBU_006 | 1/A/955:962, 1/A/973:984, 1/A/1221:1225 | No text annotation Not in a motif group | ||
| J3_3JBU_007 | 1/A/990:993, 1/A/1045:1047, 1/A/1210:1215 | No text annotation Not in a motif group | homologous J3_6CZR_021 NA | |
| J3_3JBU_008 | 1/A/1002:1006, 1/A/1023:1028, 1/A/1033:1038 | No text annotation Not in a motif group | ||
| J3_3JBU_009 | 1/A/1063:1069, 1/A/1106:1113, 1/A/1187:1193 | No text annotation Not in a motif group | ||
| J3_3JBU_010 | 1/A/1071:1074, 1/A/1083:1089, 1/A/1096:1104 | No text annotation Not in a motif group | ||
| J3_3JBU_011 | 1/A/1116:1118, 1/A/1155:1161, 1/A/1175:1184 | No text annotation Not in a motif group | ||
| J3_3JBU_012 | 1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337 | No text annotation Not in a motif group | ||
| J3_3JBU_013 | 1/a/8:16, 1/a/68:70, 1/a/106:112 | No text annotation Not in a motif group | ||
| J3_3JBU_014 | 1/b/30:31, 1/b/474:481, 1/b/509:510 | No text annotation Not in a motif group | ||
| J3_3JBU_015 | 1/b/56:57, 1/b/70:77, 1/b/109:114 | No text annotation Not in a motif group | ||
| J3_3JBU_016 | 1/b/682:689, 1/b/773:775, 1/b/791:795 | No text annotation Not in a motif group | ||
| J3_3JBU_017 | 1/b/698:700, 1/b/732:736, 1/b/760:763 | No text annotation Not in a motif group | homologous J3_5J7L_039 NA | |
| J3_3JBU_018 | 1/b/1298:1304, 1/b/1624:1627, 1/b/1639:1642 | No text annotation Not in a motif group | ||
| J3_3JBU_019 | 1/b/1306:1309, 1/b/1605:1611, 1/b/1620:1622 | No text annotation Not in a motif group | ||
| J3_3JBU_020 | 1/b/2088:2093, 1/b/2196:2200, 1/b/2223:2231 | No text annotation Not in a motif group | ||
| J3_3JBU_021 | 1/b/2517:2520, 1/b/2545:2547, 1/b/2561:2567 | No text annotation Not in a motif group | ||
| J3_3JBU_022 | 1/b/2789:2791, 1/b/2805:2806, 1/b/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_3JBU_023 | 1/b/2812:2815, 1/b/2831:2836, 1/b/2882:2888 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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