Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7NHM_0011/A/67:74No text annotation
Not in a motif group
homologous
HL_4WF9_001
HL_86769.3
HL_7NHM_0021/A/87:95No text annotation
Not in a motif group
homologous
HL_4WF9_002
HL_96598.1
HL_7NHM_0031/A/122:127No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_70546.1
HL_7NHM_0041/A/136:143No text annotation
Not in a motif group
homologous
HL_4WF9_004
HL_84085.2
HL_7NHM_0051/A/159:169No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_7NHM_0061/A/197:204No text annotation
Not in a motif group
homologous
HL_7RQB_006
HL_06192.2
HL_7NHM_0071/A/228:233No text annotation
Not in a motif group
homologous
HL_4WF9_007
HL_02862.2
HL_7NHM_0081/A/249:255No text annotation
Not in a motif group
homologous
HL_7A0S_008
HL_67216.7
HL_7NHM_0091/A/283:288No text annotation
Not in a motif group
HL_7NHM_0101/A/348:355T-loop with 1 bulged base
Not in a motif group
homologous
HL_4WF9_010
HL_89380.2
HL_7NHM_0111/A/362:366No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_70546.1
HL_7NHM_0121/A/370:378No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.9
HL_7NHM_0131/A/427:439No text annotation
Not in a motif group
HL_7NHM_0141/A/456:463No text annotation
Not in a motif group
homologous
HL_5J7L_146
HL_96598.1
HL_7NHM_0151/A/508:513GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_35490.1
HL_7NHM_0161/A/533:538GNRA
Not in a motif group
homologous
HL_4WF9_016
HL_35490.1
HL_7NHM_0171/A/587:594No text annotation
Not in a motif group
homologous
HL_4WF9_017
HL_50318.1
HL_7NHM_0181/A/609:618T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4WF9_018
HL_89380.2
HL_7NHM_0191/A/655:661No text annotation
Not in a motif group
geometric
HL_6WPI_001
HL_35490.1
HL_7NHM_0201/A/674:679GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_35490.1
HL_7NHM_0211/A/686:692GNRA with one bulged base
Not in a motif group
homologous
HL_4WF9_021
HL_35490.1
HL_7NHM_0221/A/757:764No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_7NHM_0231/A/789:798No text annotation
Not in a motif group
homologous
HL_4WF9_023
HL_39334.6
HL_7NHM_0241/A/824:830No text annotation
Not in a motif group
homologous
HL_5J7L_156
HL_74322.1
HL_7NHM_0251/A/871:876No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_53619.1
HL_7NHM_0271/A/999:1006GNRA
Not in a motif group
homologous
HL_4WF9_027
HL_35490.1
HL_7NHM_0281/A/1022:1029No text annotation
Not in a motif group
homologous
HL_5J7L_160
HL_64430.2
HL_7NHM_0291/A/1108:1118No text annotation
Not in a motif group
homologous
HL_5J7L_161
HL_07145.2
HL_7NHM_0301/A/1136:1143No text annotation
Not in a motif group
homologous
HL_7RQB_030
NA
HL_7NHM_0311/A/1214:1218No text annotation
Not in a motif group
geometric
HL_4LFB_005
HL_91104.1
HL_7NHM_0321/A/1260:1265No text annotation
Not in a motif group
homologous
HL_7A0S_031
HL_87030.2
HL_7NHM_0331/A/1318:1326No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_7NHM_0341/A/1361:1367No text annotation
Not in a motif group
homologous
HL_4WF9_033
HL_46680.1
HL_7NHM_0351/A/1400:1405Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_7NHM_0361/A/1426:1435No text annotation
Not in a motif group
homologous
HL_4WF9_035
HL_69023.2
HL_7NHM_0371/A/1495:1505No text annotation
Not in a motif group
HL_7NHM_0381/A/1535:1541No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_7NHM_0391/A/1576:1588No text annotation
Not in a motif group
HL_7NHM_0401/A/1612:1615No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.4
HL_7NHM_0411/A/1656:1663No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_7NHM_0421/A/1673:1681No text annotation
Not in a motif group
homologous
HL_4WF9_039
HL_92229.2
HL_7NHM_0431/A/1735:1740No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_03562.2
HL_7NHM_0441/A/1762:1767No text annotation
Not in a motif group
homologous
HL_7RQB_043
HL_43656.2
HL_7NHM_0451/A/1779:1783No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.4
HL_7NHM_0461/A/1804:1814No text annotation
Not in a motif group
homologous
HL_4WF9_043
HL_43613.5
HL_7NHM_0471/A/1833:1838No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_35490.1
HL_7NHM_0481/A/1895:1900No text annotation
Not in a motif group
HL_7NHM_0501/A/1976:1984No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_7NHM_0511/A/2054:2063No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_7NHM_0521/A/2236:2242No text annotation
Not in a motif group
homologous
HL_4WF9_048
HL_16845.6
HL_7NHM_0531/A/2275:2283No text annotation
Not in a motif group
homologous
HL_4WF9_049
HL_53171.2
HL_7NHM_0541/A/2291:2303No text annotation
Not in a motif group
homologous
HL_4WF9_050
HL_19870.6
HL_7NHM_0551/A/2330:2340No text annotation
Not in a motif group
homologous
HL_4WF9_051
NA
HL_7NHM_0561/A/2351:2358No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.3
HL_7NHM_0571/A/2382:2389No text annotation
Not in a motif group
homologous
HL_4WF9_053
HL_53619.1
HL_7NHM_0581/A/2401:2406GNRA
Not in a motif group
homologous
HL_4WF9_054
HL_35490.1
HL_7NHM_0591/A/2431:2440No text annotation
Not in a motif group
homologous
HL_4WF9_055
HL_40210.1
HL_7NHM_0601/A/2498:2506No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_7NHM_0611/A/2555:2562No text annotation
Not in a motif group
homologous
HL_4WF9_057
HL_91104.1
HL_7NHM_0621/A/2578:2584No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_7NHM_0631/A/2621:2626No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_35490.1
HL_7NHM_0641/A/2685:2690GNRA
Not in a motif group
geometric
HL_4V9F_066
HL_35490.1
HL_7NHM_0651/A/2728:2733Ribsomal LSU H95
Not in a motif group
homologous
HL_4WF9_061
HL_46680.1
HL_7NHM_0661/A/2772:2786No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_7NHM_0671/A/2819:2824No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_70072.1
HL_7NHM_0681/A/2839:2847No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_64690.1
HL_7NHM_0691/A/2876:2881Other HL
Not in a motif group
homologous
HL_5J7L_202
HL_35490.1
HL_7NHM_0701/B/36:42No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.4
HL_7NHM_0711/B/83:88No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.4
HL_7NHM_0721/D/13:23No text annotation
Not in a motif group
homologous
HL_1QF6_001
NA
HL_7NHM_0731/D/32:40tRNA anticodon loop
Not in a motif group
homologous
HL_4TUE_034
HL_53597.4
HL_7NHM_0741/D/54:62T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4WJ4_003
HL_22280.3
HL_7NHM_0751/a/13:23No text annotation
Not in a motif group
homologous
HL_5J7L_001
HL_89881.2
HL_7NHM_0761/a/81:89No text annotation
Not in a motif group
HL_7NHM_0771/a/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_35490.1
HL_7NHM_0781/a/193:198No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.4
HL_7NHM_0791/a/218:222No text annotation
Not in a motif group
HL_7NHM_0801/a/267:275No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_7NHM_0811/a/304:309GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_35490.1
HL_7NHM_0821/a/328:341No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_7NHM_0831/a/350:355UNCG
Not in a motif group
homologous
HL_5J7L_009
HL_03562.2
HL_7NHM_0841/a/387:392GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_35490.1
HL_7NHM_0851/a/427:432UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_7NHM_0861/a/470:479No text annotation
Not in a motif group
HL_7NHM_0871/a/530:535No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_70546.1
HL_7NHM_0881/a/625:631No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.3
HL_7NHM_0891/a/697:706No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_7NHM_0901/a/734:739Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_7NHM_0911/a/794:804No text annotation
Not in a motif group
homologous
HL_5J7L_017
HL_12326.1
HL_7NHM_0921/a/872:877GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_35490.1
HL_7NHM_0931/a/907:912GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_35490.1
HL_7NHM_0941/a/973:982No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_7NHM_0951/a/1022:1027GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_35490.1
HL_7NHM_0961/a/1088:1093GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_35490.1
HL_7NHM_0971/a/1101:1108No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_7NHM_0981/a/1145:1152No text annotation
Not in a motif group
geometric
HL_5TBW_024
HL_71554.2
HL_7NHM_0991/a/1176:1182No text annotation
Not in a motif group
homologous
HL_5J7L_026
HL_90617.2
HL_7NHM_1001/a/1276:1281GNRA
Not in a motif group
homologous
HL_5J7L_027
HL_35490.1
HL_7NHM_1011/a/1325:1334No text annotation
Not in a motif group
homologous
HL_5J7L_028
HL_89380.2
HL_7NHM_1021/a/1367:1377No text annotation
Not in a motif group
homologous
HL_5J7L_029
HL_96366.1
HL_7NHM_1031/a/1461:1465No text annotation
Not in a motif group
geometric
HL_4YAZ_004
HL_91104.1
HL_7NHM_1041/a/1527:1532No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA

Problematic loops

#loop idProblemSequence
HL_7NHM_026No text annotation
HL_7NHM_049No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7NHM_0011/A/24:30,
1/A/555:561
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_4WF9_001
IL_66414.6
IL_7NHM_0021/A/36:37,
1/A/488:490
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.5
IL_7NHM_0031/A/43:44,
1/A/480:482
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.3
IL_7NHM_0041/A/81:85,
1/A/97:104
Kink-turn
Not in a motif group
homologous
IL_4WF9_004
IL_45067.2
IL_7NHM_0051/A/152:153,
1/A/175:177
Single bulged A
Not in a motif group
homologous
IL_4WF9_006
IL_37497.5
IL_7NHM_0061/A/186:187,
1/A/215:217
Single stack bend
Not in a motif group
homologous
IL_7A0S_005
IL_76488.3
IL_7NHM_0071/A/190:197,
1/A/204:212
9x8 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_4WF9_008
IL_35728.2
IL_7NHM_0081/A/241:248,
1/A/256:262
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4WF9_009
IL_04346.7
IL_7NHM_0091/A/305:306,
1/A/409:412
Major groove minor groove platform; mini C-loop
Not in a motif group
geometric
IL_7A0S_068
IL_88739.2
IL_7NHM_0101/A/310:316,
1/A/403:405
No text annotation
Not in a motif group
IL_7NHM_0111/A/319:327,
1/A/399:400
No text annotation
Not in a motif group
IL_7NHM_0121/A/336:338,
1/A/386:390
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_7NHM_0131/A/527:530,
1/A/541:554
No text annotation
Not in a motif group
geometric
IL_4WF9_015
IL_60992.6
IL_7NHM_0141/A/581:584,
1/A/597:600
Double sheared
Not in a motif group
homologous
IL_4WF9_016
IL_09705.10
IL_7NHM_0151/A/607:609,
1/A/618:620
No text annotation
Not in a motif group
geometric
IL_4WF9_017
IL_86319.2
IL_7NHM_0161/A/638:640,
1/A/705:707
No text annotation
Not in a motif group
homologous
IL_4WF9_018
IL_70707.1
IL_7NHM_0171/A/649:653,
1/A/663:667
AAA cross-strand stack
Not in a motif group
homologous
IL_4WF9_019
IL_17136.1
IL_7NHM_0181/A/717:719,
1/A/851:853
No text annotation
Not in a motif group
homologous
IL_4WF9_020
IL_86319.2
IL_7NHM_0191/A/719:723,
1/A/844:851
tHW-tHW cross-strand stack
Not in a motif group
geometric
IL_5J7L_260
IL_17470.6
IL_7NHM_0201/A/742:743,
1/A/808:810
Single bulged A
Not in a motif group
geometric
IL_4V9F_025
IL_37497.5
IL_7NHM_0211/A/747:748,
1/A/773:775
Single bulged G
Not in a motif group
geometric
IL_7RQB_020
IL_00225.3
IL_7NHM_0221/A/748:752,
1/A/769:773
Triple sheared
Not in a motif group
homologous
IL_7RQB_021
IL_56467.8
IL_7NHM_0231/A/783:785,
1/A/802:803
Major groove platform
Not in a motif group
homologous
IL_4WF9_026
IL_27635.3
IL_7NHM_0241/A/820:822,
1/A/832:836
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_265
IL_90991.6
IL_7NHM_0251/A/882:883,
1/A/984:986
Single stack bend
Not in a motif group
homologous
IL_7A0S_022
IL_92001.1
IL_7NHM_0261/A/889:893,
1/A/975:978
No text annotation
Not in a motif group
homologous
IL_4WF9_029
IL_06300.1
IL_7NHM_0271/A/897:898,
1/A/969:971
Single bulged U
Not in a motif group
homologous
IL_4WF9_030
IL_83039.16
IL_7NHM_0281/A/901:907,
1/A/960:966
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_4WF9_031
IL_93830.3
IL_7NHM_0291/A/907:908,
1/A/958:960
Minor groove platform
Not in a motif group
homologous
IL_7A0S_028
IL_42622.3
IL_7NHM_0301/A/909:913,
1/A/954:957
C-loop
Not in a motif group
homologous
IL_7RQB_029
IL_02509.1
IL_7NHM_0311/A/920:924,
1/A/942:947
No text annotation
Not in a motif group
IL_7NHM_0321/A/924:929,
1/A/937:942
No text annotation
Not in a motif group
IL_7NHM_0331/A/1038:1040,
1/A/1203:1204
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_7NHM_0341/A/1042:1046,
1/A/1197:1201
UAA/GAN
Not in a motif group
homologous
IL_4WF9_036
IL_89002.2
IL_7NHM_0351/A/1048:1055,
1/A/1194:1195
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4WF9_037
IL_15861.7
IL_7NHM_0361/A/1055:1057,
1/A/1193:1194
Single bulged U
Not in a motif group
geometric
IL_5J7L_279
IL_83039.16
IL_7NHM_0371/A/1062:1068,
1/A/1184:1188
No text annotation
Not in a motif group
homologous
IL_5J7L_280
IL_57188.3
IL_7NHM_0381/A/1068:1074,
1/A/1168:1184
No text annotation
Not in a motif group
geometric
IL_4WF9_040
IL_50715.1
IL_7NHM_0391/A/1075:1078,
1/A/1165:1167
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7A0S_038
IL_43275.1
IL_7NHM_0401/A/1081:1083,
1/A/1160:1162
No text annotation
Not in a motif group
homologous
IL_4WF9_042
IL_70707.1
IL_7NHM_0411/A/1087:1095,
1/A/1152:1156
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_7NHM_0421/A/1103:1106,
1/A/1120:1123
No text annotation
Not in a motif group
homologous
IL_6PRV_001
IL_23544.2
IL_7NHM_0431/A/1131:1135,
1/A/1144:1146
No text annotation
Not in a motif group
homologous
IL_7RQB_044
NA
IL_7NHM_0441/A/1235:1237,
1/A/1285:1288
Isolated cWS basepair
Not in a motif group
homologous
IL_4WF9_044
IL_52767.4
IL_7NHM_0451/A/1243:1245,
1/A/1277:1279
Isolated cWH basepair
Not in a motif group
homologous
IL_4WF9_045
IL_70707.1
IL_7NHM_0461/A/1246:1253,
1/A/1272:1276
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_7NHM_0471/A/1257:1259,
1/A/1266:1268
Intercalated cWW
Not in a motif group
homologous
IL_4WF9_047
IL_64417.2
IL_7NHM_0481/A/1300:1307,
1/A/2038:2044
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_049
IL_04346.7
IL_7NHM_0491/A/1347:1350,
1/A/1647:1648
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4WF9_049
IL_50694.2
IL_7NHM_0501/A/1356:1360,
1/A/1368:1370
Major groove minor groove platform with tHH
Not in a motif group
homologous
IL_4WF9_050
IL_37712.2
IL_7NHM_0511/A/1388:1392,
1/A/1413:1417
UAA/GAN
Not in a motif group
homologous
IL_7A0S_048
IL_89002.2
IL_7NHM_0521/A/1394:1398,
1/A/1407:1411
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_7NHM_0531/A/1448:1451,
1/A/1632:1635
Double sheared
Not in a motif group
geometric
IL_4KZD_002
IL_09705.10
IL_7NHM_0541/A/1452:1460,
1/A/1628:1631
No text annotation
Not in a motif group
IL_7NHM_0551/A/1461:1465,
1/A/1624:1627
Other IL
Not in a motif group
homologous
IL_4WF9_054
IL_04059.1
IL_7NHM_0561/A/1476:1479,
1/A/1604:1608
No text annotation
Not in a motif group
IL_7NHM_0571/A/1481:1484,
1/A/1598:1602
tSH-tHW
Not in a motif group
homologous
IL_7RQB_057
IL_04059.1
IL_7NHM_0581/A/1512:1515,
1/A/1565:1569
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_7NHM_0591/A/1519:1522,
1/A/1558:1561
Double sheared
Not in a motif group
geometric
IL_4LFB_060
IL_09705.10
IL_7NHM_0601/A/1525:1526,
1/A/1549:1555
No text annotation
Not in a motif group
homologous
IL_7RQB_061
IL_52493.1
IL_7NHM_0611/A/1532:1534,
1/A/1542:1543
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.5
IL_7NHM_0621/A/1695:1700,
1/A/2031:2033
No text annotation
Not in a motif group
homologous
IL_4WF9_062
IL_12566.2
IL_7NHM_0631/A/1707:1709,
1/A/2022:2024
Isolated tWW turn
Not in a motif group
homologous
IL_4WF9_063
IL_54997.7
IL_7NHM_0641/A/1710:1713,
1/A/2020:2021
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_5J7L_306
IL_50694.2
IL_7NHM_0651/A/1713:1718,
1/A/2017:2020
Intercalated tWH
Not in a motif group
homologous
IL_4WF9_065
IL_76273.1
IL_7NHM_0661/A/1730:1735,
1/A/1740:1746
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_7RQB_068
IL_65969.2
IL_7NHM_0671/A/1757:1759,
1/A/1770:1772
Isolated cWH basepair
Not in a motif group
geometric
IL_6IA2_003
IL_70707.1
IL_7NHM_0681/A/1797:1798,
1/A/2007:2009
Single bulged A
Not in a motif group
homologous
IL_4WF9_068
IL_37497.5
IL_7NHM_0691/A/1825:1831,
1/A/1840:1848
Kink-turn related
Not in a motif group
homologous
IL_7RQB_070
IL_17069.3
IL_7NHM_0701/A/1864:1867,
1/A/1929:1930
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.2
IL_7NHM_0711/A/1868:1869,
1/A/1925:1928
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_7NHM_0721/A/1873:1876,
1/A/1920:1921
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.7
IL_7NHM_0731/A/1878:1882,
1/A/1914:1918
UAA/GAN with extra pair
Not in a motif group
homologous
IL_7RQB_074
IL_90318.1
IL_7NHM_0741/A/1883:1887,
1/A/1909:1913
Triple sheared
Not in a motif group
homologous
IL_7RQB_075
IL_56467.8
IL_7NHM_0751/A/1891:1894,
1/A/1901:1905
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.2
IL_7NHM_0761/A/1960:1961,
1/A/1991:1994
No text annotation
Not in a motif group
homologous
IL_4WF9_076
IL_59677.2
IL_7NHM_0771/A/1961:1972,
1/A/1988:1991
No text annotation
Not in a motif group
geometric
IL_4WF9_077
IL_81589.2
IL_7NHM_0781/A/2077:2079,
1/A/2644:2645
Major groove platform
Not in a motif group
homologous
IL_7RQB_078
IL_27635.3
IL_7NHM_0791/A/2081:2083,
1/A/2639:2642
Minor groove platform with intercalation
Not in a motif group
geometric
IL_5TBW_092
IL_54678.5
IL_7NHM_0801/A/2094:2096,
1/A/2469:2470
Single bulged U
Not in a motif group
homologous
IL_7RQB_080
IL_83039.16
IL_7NHM_0811/A/2097:2098,
1/A/2465:2468
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.3
IL_7NHM_0821/A/2108:2110,
1/A/2263:2266
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_4WF9_082
IL_38958.7
IL_7NHM_0831/A/2123:2125,
1/A/2218:2220
No text annotation
Not in a motif group
geometric
IL_4WF9_017
IL_86319.2
IL_7NHM_0841/A/2229:2231,
1/A/2247:2248
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.16
IL_7NHM_0851/A/2324:2326,
1/A/2344:2348
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_088
IL_38958.7
IL_7NHM_0861/A/2377:2380,
1/A/2391:2394
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.10
IL_7NHM_0871/A/2428:2430,
1/A/2441:2442
Single bulged U
Not in a motif group
homologous
IL_5J7L_334
IL_83039.16
IL_7NHM_0881/A/2480:2481,
1/A/2525:2527
Single stack bend
Not in a motif group
geometric
IL_4WF9_089
IL_76488.3
IL_7NHM_0891/A/2481:2482,
1/A/2523:2525
Major groove platform
Not in a motif group
homologous
IL_7RQB_092
IL_27635.3
IL_7NHM_0901/A/2484:2486,
1/A/2520:2521
Major groove platform
Not in a motif group
homologous
IL_4WF9_091
IL_27635.3
IL_7NHM_0911/A/2486:2488,
1/A/2516:2520
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_7RQB_094
IL_92788.2
IL_7NHM_0921/A/2493:2497,
1/A/2507:2511
Triple sheared
Not in a motif group
homologous
IL_4WF9_093
IL_56467.8
IL_7NHM_0931/A/2534:2536,
1/A/2606:2609
Major groove platform with extra pair
Not in a motif group
geometric
IL_7RQB_093
IL_63450.2
IL_7NHM_0941/A/2537:2539,
1/A/2601:2605
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_4WF9_095
IL_90933.2
IL_7NHM_0951/A/2539:2540,
1/A/2598:2601
Multiple bulged bases
Not in a motif group
geometric
IL_7RQB_098
IL_71530.2
IL_7NHM_0961/A/2549:2550,
1/A/2567:2570
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_7NHM_0971/A/2618:2619,
1/A/2628:2630
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.5
IL_7NHM_0981/A/2663:2667,
1/A/2801:2809
tSH-tHS-tHW
Not in a motif group
homologous
IL_7A0S_093
IL_04638.1
IL_7NHM_0991/A/2679:2685,
1/A/2690:2695
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
homologous
IL_7A0S_094
IL_16458.1
IL_7NHM_1001/A/2707:2711,
1/A/2752:2754
C-loop
Not in a motif group
homologous
IL_4WF9_101
IL_63596.6
IL_7NHM_1011/A/2714:2718,
1/A/2745:2749
No text annotation
Not in a motif group
homologous
IL_4WF9_102
IL_08296.3
IL_7NHM_1021/A/2722:2723,
1/A/2738:2741
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_7NHM_1031/A/2764:2769,
1/A/2789:2794
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_7A0S_098
IL_49767.5
IL_7NHM_1041/A/2858:2859,
1/A/2898:2900
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_352
IL_16396.2
IL_7NHM_1051/A/2863:2865,
1/A/2891:2894
No text annotation
Not in a motif group
homologous
IL_4WF9_107
IL_02284.7
IL_7NHM_1061/A/2867:2872,
1/A/2885:2889
No text annotation
Not in a motif group
homologous
IL_4WF9_108
IL_83162.5
IL_7NHM_1071/B/15:16,
1/B/63:65
Major groove intercalation
Not in a motif group
homologous
IL_7RQB_111
IL_37497.5
IL_7NHM_1081/B/21:27,
1/B/53:58
No text annotation
Not in a motif group
IL_7NHM_1091/B/28:29,
1/B/49:52
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_357
IL_09061.7
IL_7NHM_1101/B/32:36,
1/B/42:46
Symmetric double minor groove platform
Not in a motif group
homologous
IL_4V9F_104
IL_58103.6
IL_7NHM_1111/B/69:77,
1/B/94:102
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7A0S_106
IL_56455.3
IL_7NHM_1121/B/78:80,
1/B/91:93
No text annotation
Not in a motif group
homologous
IL_7A0S_107
IL_70707.1
IL_7NHM_1131/a/31:33,
1/a/560:561
Single bulged G
Not in a motif group
homologous
IL_6CZR_113
IL_00225.3
IL_7NHM_1141/a/45:46,
1/a/404:406
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.5
IL_7NHM_1151/a/48:53,
1/a/367:369
No text annotation
Not in a motif group
homologous
IL_5J7L_003
IL_14177.1
IL_7NHM_1161/a/55:57,
1/a/364:365
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_42622.3
IL_7NHM_1171/a/64:67,
1/a/102:103
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_7NHM_1181/a/68:70,
1/a/99:101
No text annotation
Not in a motif group
homologous
IL_6CZR_118
IL_86319.2
IL_7NHM_1191/a/128:131,
1/a/239:240
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_7NHM_1201/a/132:136,
1/a/235:238
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_7NHM_1211/a/147:153,
1/a/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_7NHM_1221/a/154:156,
1/a/165:167
No text annotation
Not in a motif group
geometric
IL_2O3V_001
IL_86319.2
IL_7NHM_1231/a/184:185,
1/a/206:208
No text annotation
Not in a motif group
IL_7NHM_1241/a/250:255,
1/a/285:292
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_7NHM_1251/a/257:260,
1/a/282:283
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_7NHM_1261/a/300:301,
1/a/312:316
C-loop
Not in a motif group
homologous
IL_5J7L_016
IL_37712.2
IL_7NHM_1271/a/375:377,
1/a/400:401
Single bulged U
Not in a motif group
homologous
IL_6CZR_126
IL_83039.16
IL_7NHM_1281/a/379:383,
1/a/397:398
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_75255.1
IL_7NHM_1291/a/383:384,
1/a/395:397
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.3
IL_7NHM_1301/a/417:424,
1/a/435:441
No text annotation
Not in a motif group
homologous
IL_5J7L_020
IL_28026.1
IL_7NHM_1311/a/454:458,
1/a/491:496
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4LFB_018
IL_88269.3
IL_7NHM_1321/a/458:464,
1/a/485:491
No text annotation
Not in a motif group
IL_7NHM_1331/a/512:519,
1/a/548:549
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_7NHM_1341/a/523:529,
1/a/536:544
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_7NHM_1351/a/577:583,
1/a/890:891
No text annotation
Not in a motif group
homologous
IL_6CZR_134
IL_69996.1
IL_7NHM_1361/a/588:592,
1/a/765:769
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_7NHM_1371/a/602:604,
1/a/652:653
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.3
IL_7NHM_1381/a/605:606,
1/a/648:651
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.7
IL_7NHM_1391/a/612:613,
1/a/640:642
Single bulged U
Not in a motif group
geometric
IL_4C7O_001
IL_83039.16
IL_7NHM_1401/a/613:620,
1/a/636:640
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_7NHM_1411/a/662:663,
1/a/759:762
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4LFB_027
IL_50694.2
IL_7NHM_1421/a/664:666,
1/a/755:758
No text annotation
Not in a motif group
geometric
IL_6CZR_136
IL_05564.2
IL_7NHM_1431/a/670:674,
1/a/748:751
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_7NHM_1441/a/681:686,
1/a/720:725
No text annotation
Not in a motif group
geometric
IL_4LFB_030
IL_04668.2
IL_7NHM_1451/a/692:696,
1/a/707:714
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_7NHM_1461/a/782:787,
1/a/811:813
Other IL
Not in a motif group
geometric
IL_4V88_435
IL_22046.1
IL_7NHM_1471/a/787:791,
1/a/807:811
tSH-tHW-tHS
Not in a motif group
geometric
IL_5J7L_037
IL_17136.1
IL_7NHM_1481/a/897:904,
1/a/915:920
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_7NHM_1491/a/932:933,
1/a/1404:1406
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.5
IL_7NHM_1501/a/935:937,
1/a/1401:1402
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_00225.3
IL_7NHM_1511/a/943:945,
1/a/1391:1395
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_7NHM_1521/a/963:964,
1/a/1237:1239
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_42622.3
IL_7NHM_1531/a/1003:1007,
1/a/1056:1057
Minor groove platform
Not in a motif group
geometric
IL_5J7L_043
IL_47078.1
IL_7NHM_1541/a/1008:1009,
1/a/1053:1055
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.3
IL_7NHM_1551/a/1012:1018,
1/a/1031:1050
No text annotation
Not in a motif group
IL_7NHM_1561/a/1060:1062,
1/a/1219:1220
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.16
IL_7NHM_1571/a/1064:1068,
1/a/1215:1217
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2