7NHM Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7NHM_001 | 1/A/67:74 | No text annotation | homologous HL_4WF9_001 HL_86769.4 | |
| HL_7NHM_002 | 1/A/87:95 | Pseudoknot geometry | homologous HL_4WF9_002 HL_77600.2 | |
| HL_7NHM_003 | 1/A/122:127 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_7NHM_004 | 1/A/136:143 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_81538.2 | |
| HL_7NHM_005 | 1/A/159:169 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_7NHM_006 | 1/A/197:204 | No text annotation | homologous HL_7RQB_006 NA | |
| HL_7NHM_007 | 1/A/228:233 | No text annotation | homologous HL_4WF9_007 HL_53890.2 | |
| HL_7NHM_008 | 1/A/249:255 | No text annotation | homologous HL_7A0S_008 HL_37369.2 | |
| HL_7NHM_009 | 1/A/283:288 | No text annotation | homologous HL_4WF9_009 HL_81100.2 | |
| HL_7NHM_010 | 1/A/348:355 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_010 HL_01609.3 | |
| HL_7NHM_011 | 1/A/362:366 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_7NHM_012 | 1/A/370:378 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_7NHM_108 | 1/A/428:438 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_7NHM_014 | 1/A/456:463 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_7NHM_015 | 1/A/508:513 | GNRA | homologous HL_4WF9_015 HL_37824.7 | |
| HL_7NHM_016 | 1/A/533:538 | GNRA | homologous HL_4WF9_016 HL_37824.7 | |
| HL_7NHM_017 | 1/A/587:594 | No text annotation | homologous HL_4WF9_017 HL_50318.1 | |
| HL_7NHM_018 | 1/A/609:618 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_018 HL_28252.6 | |
| HL_7NHM_019 | 1/A/655:661 | GNRA | geometric HL_6WPI_001 HL_37824.7 | |
| HL_7NHM_020 | 1/A/674:679 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_7NHM_021 | 1/A/686:692 | GNRA | homologous HL_4WF9_021 HL_37824.7 | |
| HL_7NHM_022 | 1/A/757:764 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_7NHM_023 | 1/A/789:798 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
| HL_7NHM_024 | 1/A/824:830 | No text annotation | homologous HL_5J7L_156 HL_87954.2 | |
| HL_7NHM_025 | 1/A/871:876 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_7NHM_027 | 1/A/999:1006 | GNRA | homologous HL_4WF9_027 HL_37824.7 | |
| HL_7NHM_028 | 1/A/1022:1029 | No text annotation | homologous HL_5J7L_160 HL_42998.2 | |
| HL_7NHM_029 | 1/A/1108:1118 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_7NHM_030 | 1/A/1136:1143 | No text annotation | homologous HL_7RQB_030 NA | |
| HL_7NHM_031 | 1/A/1214:1218 | Mini UNCG | geometric HL_4LFB_005 HL_48778.2 | |
| HL_7NHM_032 | 1/A/1260:1265 | GNRA | homologous HL_7A0S_031 HL_37824.7 | |
| HL_7NHM_033 | 1/A/1318:1326 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_7NHM_034 | 1/A/1361:1367 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_57176.2 | |
| HL_7NHM_035 | 1/A/1400:1405 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_7NHM_036 | 1/A/1426:1435 | No text annotation | homologous HL_4WF9_035 HL_81545.2 | |
| HL_7NHM_037 | 1/A/1495:1505 | No text annotation | ||
| HL_7NHM_038 | 1/A/1535:1541 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_7NHM_039 | 1/A/1576:1588 | No text annotation | ||
| HL_7NHM_040 | 1/A/1612:1615 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_7NHM_041 | 1/A/1656:1663 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_7NHM_042 | 1/A/1673:1681 | GNRA with extra cWW | homologous HL_4WF9_039 HL_20167.2 | |
| HL_7NHM_043 | 1/A/1735:1740 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_7NHM_044 | 1/A/1762:1767 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_7NHM_045 | 1/A/1779:1783 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_7NHM_046 | 1/A/1804:1814 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_7NHM_047 | 1/A/1833:1838 | GNRA | homologous HL_7RQB_046 NA | |
| HL_7NHM_048 | 1/A/1895:1900 | No text annotation | ||
| HL_7NHM_049 | 1/A/1937:1947 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_7NHM_050 | 1/A/1976:1984 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_7NHM_105 | 1/A/2019:2023 | No text annotation | ||
| HL_7NHM_051 | 1/A/2054:2063 | No text annotation | homologous HL_4WF9_047 HL_61996.2 | |
| HL_7NHM_052 | 1/A/2236:2242 | No text annotation | homologous HL_4WF9_048 HL_49922.4 | |
| HL_7NHM_053 | 1/A/2275:2283 | No text annotation | homologous HL_4WF9_049 HL_85367.2 | |
| HL_7NHM_054 | 1/A/2291:2303 | No text annotation | homologous HL_4WF9_050 HL_91939.2 | |
| HL_7NHM_055 | 1/A/2330:2340 | No text annotation | homologous HL_4WF9_051 NA | |
| HL_7NHM_056 | 1/A/2351:2358 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_7NHM_057 | 1/A/2382:2389 | GNRA with extra cWW | homologous HL_4WF9_053 HL_04259.3 | |
| HL_7NHM_058 | 1/A/2401:2406 | GNRA | homologous HL_4WF9_054 HL_37824.7 | |
| HL_7NHM_059 | 1/A/2431:2440 | No text annotation | homologous HL_4WF9_055 HL_53454.2 | |
| HL_7NHM_060 | 1/A/2498:2506 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_7NHM_061 | 1/A/2555:2562 | No text annotation | homologous HL_4WF9_057 HL_31585.3 | |
| HL_7NHM_062 | 1/A/2578:2584 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_7NHM_063 | 1/A/2621:2626 | GNRA | homologous HL_7RQB_063 NA | |
| HL_7NHM_064 | 1/A/2685:2690 | GNRA | geometric HL_4V9F_066 HL_37824.7 | |
| HL_7NHM_065 | 1/A/2728:2733 | Ribsomal LSU H95 | homologous HL_4WF9_061 HL_65794.5 | |
| HL_7NHM_066 | 1/A/2772:2786 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_7NHM_067 | 1/A/2819:2824 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_7NHM_068 | 1/A/2839:2847 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_7NHM_069 | 1/A/2876:2881 | GNRA | homologous HL_5J7L_202 HL_37824.7 | |
| HL_7NHM_106 | 1/B/32:46 | No text annotation | homologous HL_4V9F_074 HL_97756.2 | |
| HL_7NHM_070 | 1/B/36:42 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_7NHM_071 | 1/B/83:88 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_7NHM_072 | 1/D/13:23 | tRNA D-loop | homologous HL_1QF6_001 HL_20811.4 | |
| HL_7NHM_073 | 1/D/32:40 | tRNA anticodon loop | homologous HL_4TUE_034 HL_06059.5 | |
| HL_7NHM_074 | 1/D/54:62 | T-loop with 2 stacked bulged bases | homologous HL_4WJ4_003 HL_28252.6 | |
| HL_7NHM_075 | 1/a/13:23 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_7NHM_107 | 1/a/72:97 | No text annotation | ||
| HL_7NHM_076 | 1/a/81:89 | No text annotation | ||
| HL_7NHM_077 | 1/a/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_7NHM_078 | 1/a/193:198 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_7NHM_079 | 1/a/218:222 | No text annotation | geometric HL_4V88_198 NA | |
| HL_7NHM_080 | 1/a/267:275 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_7NHM_081 | 1/a/304:309 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_7NHM_082 | 1/a/328:341 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_7NHM_083 | 1/a/350:355 | UNCG | homologous HL_5J7L_009 HL_34617.5 | |
| HL_7NHM_084 | 1/a/387:392 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_7NHM_085 | 1/a/427:432 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_7NHM_086 | 1/a/470:479 | No text annotation | ||
| HL_7NHM_087 | 1/a/530:535 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_7NHM_088 | 1/a/625:631 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_7NHM_089 | 1/a/697:706 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_7NHM_090 | 1/a/734:739 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_7NHM_091 | 1/a/794:804 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_7NHM_092 | 1/a/872:877 | GNRA | homologous HL_5J7L_019 HL_37824.7 | |
| HL_7NHM_093 | 1/a/907:912 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_7NHM_094 | 1/a/973:982 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_7NHM_095 | 1/a/1022:1027 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_7NHM_096 | 1/a/1088:1093 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_7NHM_097 | 1/a/1101:1108 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_7NHM_098 | 1/a/1145:1152 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_7NHM_099 | 1/a/1176:1182 | GNRA | homologous HL_5J7L_026 HL_93535.1 | |
| HL_7NHM_100 | 1/a/1276:1281 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
| HL_7NHM_101 | 1/a/1325:1334 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
| HL_7NHM_102 | 1/a/1367:1377 | No text annotation | homologous HL_5J7L_029 HL_06226.4 | |
| HL_7NHM_103 | 1/a/1461:1465 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_7NHM_104 | 1/a/1527:1532 | GNRA | homologous HL_6CZR_103 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7NHM_013 | No text annotation | ||
| HL_7NHM_026 | Externally structured |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7NHM_001 | 1/A/24:30, 1/A/555:561 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_04021.2 | |
| IL_7NHM_002 | 1/A/36:37, 1/A/488:490 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_7NHM_003 | 1/A/43:44, 1/A/480:482 | Minor groove platform | homologous IL_5J7L_247 IL_51454.2 | |
| IL_7NHM_179 | 1/A/56:76, 1/A/109:113 | No text annotation | ||
| IL_7NHM_004 | 1/A/81:85, 1/A/97:104 | Kink-turn | homologous IL_4WF9_004 IL_01488.3 | |
| IL_7NHM_005 | 1/A/152:153, 1/A/175:177 | Single bulged A | homologous IL_4WF9_006 IL_31462.5 | |
| IL_7NHM_006 | 1/A/186:187, 1/A/215:217 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
| IL_7NHM_007 | 1/A/190:197, 1/A/204:212 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_84694.2 | |
| IL_7NHM_008 | 1/A/241:248, 1/A/256:262 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_009 IL_04346.10 | |
| IL_7NHM_009 | 1/A/305:306, 1/A/409:412 | Major groove minor groove platform; mini C-loop | geometric IL_7A0S_068 IL_68140.4 | |
| IL_7NHM_010 | 1/A/310:316, 1/A/403:405 | No text annotation | ||
| IL_7NHM_011 | 1/A/319:327, 1/A/399:400 | No text annotation | ||
| IL_7NHM_012 | 1/A/336:338, 1/A/386:390 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_7NHM_013 | 1/A/527:530, 1/A/541:554 | No text annotation | geometric IL_4WF9_015 IL_81516.2 | |
| IL_7NHM_014 | 1/A/581:584, 1/A/597:600 | Double sheared | homologous IL_4WF9_016 IL_09705.15 | |
| IL_7NHM_015 | 1/A/607:609, 1/A/618:620 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_07785.1 | |
| IL_7NHM_016 | 1/A/638:640, 1/A/705:707 | Isolated non-canonical cWW pair | homologous IL_4WF9_018 IL_07785.1 | |
| IL_7NHM_017 | 1/A/649:653, 1/A/663:667 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.2 | |
| IL_7NHM_018 | 1/A/717:719, 1/A/851:853 | Isolated non-canonical cWW pair | homologous IL_4WF9_020 IL_87907.2 | |
| IL_7NHM_019 | 1/A/719:723, 1/A/844:851 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 IL_54041.2 | |
| IL_7NHM_020 | 1/A/742:743, 1/A/808:810 | Single bulged A | geometric IL_4V9F_025 IL_31462.5 | |
| IL_7NHM_021 | 1/A/747:748, 1/A/773:775 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_7NHM_022 | 1/A/748:752, 1/A/769:773 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_7NHM_023 | 1/A/783:785, 1/A/802:803 | Major groove platform | homologous IL_4WF9_026 IL_48076.6 | |
| IL_7NHM_024 | 1/A/820:822, 1/A/832:836 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_7NHM_025 | 1/A/882:883, 1/A/984:986 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
| IL_7NHM_026 | 1/A/889:893, 1/A/975:978 | No text annotation | homologous IL_4WF9_029 IL_06300.1 | |
| IL_7NHM_027 | 1/A/897:898, 1/A/969:971 | Single bulged U | homologous IL_4WF9_030 IL_89505.4 | |
| IL_7NHM_028 | 1/A/901:907, 1/A/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4WF9_031 IL_29198.2 | |
| IL_7NHM_029 | 1/A/907:908, 1/A/958:960 | Minor groove platform | homologous IL_7A0S_028 IL_51454.2 | |
| IL_7NHM_030 | 1/A/909:913, 1/A/954:957 | C-loop | homologous IL_7RQB_029 NA | |
| IL_7NHM_031 | 1/A/920:924, 1/A/942:947 | No text annotation | ||
| IL_7NHM_032 | 1/A/924:929, 1/A/937:942 | No text annotation | ||
| IL_7NHM_033 | 1/A/1038:1040, 1/A/1203:1204 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_7NHM_034 | 1/A/1042:1046, 1/A/1197:1201 | UAA/GAN | homologous IL_4WF9_036 IL_38507.2 | |
| IL_7NHM_035 | 1/A/1048:1055, 1/A/1194:1195 | SSU/LSU pseudoknot | homologous IL_4WF9_037 IL_41203.4 | |
| IL_7NHM_036 | 1/A/1055:1057, 1/A/1193:1194 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
| IL_7NHM_037 | 1/A/1062:1068, 1/A/1184:1188 | Kink-turn related | homologous IL_5J7L_280 IL_57188.5 | |
| IL_7NHM_038 | 1/A/1068:1074, 1/A/1168:1184 | No text annotation | geometric IL_4WF9_040 IL_50715.3 | |
| IL_7NHM_039 | 1/A/1075:1078, 1/A/1165:1167 | Isolated non-canonical cWW pair | homologous IL_7A0S_038 IL_57744.1 | |
| IL_7NHM_040 | 1/A/1081:1083, 1/A/1160:1162 | Isolated non-canonical cWW pair | homologous IL_4WF9_042 IL_87907.2 | |
| IL_7NHM_041 | 1/A/1087:1095, 1/A/1152:1156 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_7NHM_042 | 1/A/1103:1106, 1/A/1120:1123 | No text annotation | homologous IL_6PRV_001 IL_92446.2 | |
| IL_7NHM_043 | 1/A/1131:1135, 1/A/1144:1146 | No text annotation | homologous IL_7RQB_044 NA | |
| IL_7NHM_044 | 1/A/1235:1237, 1/A/1285:1288 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.3 | |
| IL_7NHM_045 | 1/A/1243:1245, 1/A/1277:1279 | Isolated cWH basepair | homologous IL_4WF9_045 IL_10167.5 | |
| IL_7NHM_046 | 1/A/1246:1253, 1/A/1272:1276 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
| IL_7NHM_047 | 1/A/1257:1259, 1/A/1266:1268 | Intercalated cWW | homologous IL_4WF9_047 IL_31737.3 | |
| IL_7NHM_048 | 1/A/1300:1307, 1/A/2038:2044 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_7NHM_049 | 1/A/1347:1350, 1/A/1647:1648 | Major groove platform; stack outside cWW | homologous IL_4WF9_049 IL_50694.7 | |
| IL_7NHM_050 | 1/A/1356:1360, 1/A/1368:1370 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_83150.2 | |
| IL_7NHM_051 | 1/A/1388:1392, 1/A/1413:1417 | UAA/GAN | homologous IL_7A0S_048 IL_89021.2 | |
| IL_7NHM_052 | 1/A/1394:1398, 1/A/1407:1411 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_7NHM_053 | 1/A/1448:1451, 1/A/1632:1635 | Double sheared | geometric IL_4KZD_002 IL_09705.15 | |
| IL_7NHM_054 | 1/A/1452:1460, 1/A/1628:1631 | No text annotation | ||
| IL_7NHM_055 | 1/A/1461:1465, 1/A/1624:1627 | Other IL | homologous IL_4WF9_054 IL_99646.2 | |
| IL_7NHM_056 | 1/A/1476:1479, 1/A/1604:1608 | No text annotation | ||
| IL_7NHM_057 | 1/A/1481:1484, 1/A/1598:1602 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_7NHM_058 | 1/A/1512:1515, 1/A/1565:1569 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_7NHM_059 | 1/A/1519:1522, 1/A/1558:1561 | Double sheared | geometric IL_4LFB_060 IL_09705.15 | |
| IL_7NHM_060 | 1/A/1525:1526, 1/A/1549:1555 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_7NHM_061 | 1/A/1532:1534, 1/A/1542:1543 | Single bulged A | homologous IL_5J7L_302 IL_31462.5 | |
| IL_7NHM_062 | 1/A/1695:1700, 1/A/2031:2033 | No text annotation | homologous IL_4WF9_062 IL_12566.4 | |
| IL_7NHM_063 | 1/A/1707:1709, 1/A/2022:2024 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
| IL_7NHM_181 | 1/A/1707:1718, 1/A/2017:2024 | No text annotation | ||
| IL_7NHM_064 | 1/A/1710:1713, 1/A/2020:2021 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 IL_50694.7 | |
| IL_7NHM_065 | 1/A/1713:1718, 1/A/2017:2020 | Intercalated tWH | homologous IL_4WF9_065 IL_76758.2 | |
| IL_7NHM_066 | 1/A/1730:1735, 1/A/1740:1746 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_7NHM_067 | 1/A/1757:1759, 1/A/1770:1772 | Isolated cWH basepair | geometric IL_6IA2_003 IL_10167.5 | |
| IL_7NHM_068 | 1/A/1797:1798, 1/A/2007:2009 | Single bulged A | homologous IL_4WF9_068 IL_31462.5 | |
| IL_7NHM_069 | 1/A/1825:1831, 1/A/1840:1848 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_7NHM_070 | 1/A/1864:1867, 1/A/1929:1930 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_7NHM_071 | 1/A/1868:1869, 1/A/1925:1928 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_7NHM_072 | 1/A/1873:1876, 1/A/1920:1921 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 IL_68140.4 | |
| IL_7NHM_073 | 1/A/1878:1882, 1/A/1914:1918 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_7NHM_074 | 1/A/1883:1887, 1/A/1909:1913 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_7NHM_075 | 1/A/1891:1894, 1/A/1901:1905 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_7NHM_076 | 1/A/1960:1961, 1/A/1991:1994 | Bulged stacked bases | homologous IL_4WF9_076 IL_22551.3 | |
| IL_7NHM_077 | 1/A/1961:1972, 1/A/1988:1991 | No text annotation | geometric IL_4WF9_077 IL_42218.2 | |
| IL_7NHM_078 | 1/A/2077:2079, 1/A/2644:2645 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_7NHM_079 | 1/A/2081:2083, 1/A/2639:2642 | Major groove platform with intercalation | geometric IL_5TBW_092 NA | |
| IL_7NHM_080 | 1/A/2094:2096, 1/A/2469:2470 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_7NHM_081 | 1/A/2097:2098, 1/A/2465:2468 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_7NHM_082 | 1/A/2108:2110, 1/A/2263:2266 | Isolated tHS basepair with bulges | homologous IL_4WF9_082 IL_85599.2 | |
| IL_7NHM_083 | 1/A/2123:2125, 1/A/2218:2220 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_07785.1 | |
| IL_7NHM_084 | 1/A/2229:2231, 1/A/2247:2248 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_7NHM_085 | 1/A/2324:2326, 1/A/2344:2348 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_7NHM_086 | 1/A/2377:2380, 1/A/2391:2394 | Double sheared | homologous IL_5J7L_333 IL_09705.15 | |
| IL_7NHM_087 | 1/A/2428:2430, 1/A/2441:2442 | Single bulged U | homologous IL_5J7L_334 IL_89505.4 | |
| IL_7NHM_088 | 1/A/2480:2481, 1/A/2525:2527 | Single stack bend | geometric IL_4WF9_089 IL_26793.1 | |
| IL_7NHM_089 | 1/A/2481:2482, 1/A/2523:2525 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_7NHM_090 | 1/A/2484:2486, 1/A/2520:2521 | Major groove platform | homologous IL_4WF9_091 IL_48076.6 | |
| IL_7NHM_091 | 1/A/2486:2488, 1/A/2516:2520 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_7NHM_092 | 1/A/2493:2497, 1/A/2507:2511 | Triple sheared | homologous IL_4WF9_093 IL_17948.2 | |
| IL_7NHM_182 | 1/A/2534:2535, 1/A/2607:2609 | Major groove platform | homologous IL_7A0S_088 IL_07039.3 | |
| IL_7NHM_094 | 1/A/2537:2539, 1/A/2601:2605 | Isolated non-canonical cWW with bulges | homologous IL_4WF9_095 IL_07785.1 | |
| IL_7NHM_095 | 1/A/2539:2540, 1/A/2598:2601 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_7NHM_096 | 1/A/2549:2550, 1/A/2567:2570 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_7NHM_097 | 1/A/2618:2619, 1/A/2628:2630 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_7NHM_098 | 1/A/2663:2667, 1/A/2801:2809 | tSH-tHS-tHW | homologous IL_7A0S_093 IL_04638.3 | |
| IL_7NHM_099 | 1/A/2679:2685, 1/A/2690:2695 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.4 | |
| IL_7NHM_100 | 1/A/2707:2711, 1/A/2752:2754 | C-loop | homologous IL_4WF9_101 IL_63596.11 | |
| IL_7NHM_101 | 1/A/2714:2718, 1/A/2745:2749 | No text annotation | homologous IL_4WF9_102 IL_23774.1 | |
| IL_7NHM_102 | 1/A/2722:2723, 1/A/2738:2741 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_7NHM_103 | 1/A/2764:2769, 1/A/2789:2794 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_49767.8 | |
| IL_7NHM_104 | 1/A/2858:2859, 1/A/2898:2900 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_7NHM_105 | 1/A/2863:2865, 1/A/2891:2894 | No text annotation | homologous IL_4WF9_107 IL_31531.3 | |
| IL_7NHM_106 | 1/A/2867:2872, 1/A/2885:2889 | tHS double platform | homologous IL_4WF9_108 IL_70411.2 | |
| IL_7NHM_107 | 1/B/15:16, 1/B/63:65 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_7NHM_108 | 1/B/21:27, 1/B/53:58 | No text annotation | ||
| IL_7NHM_109 | 1/B/28:29, 1/B/49:52 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_7NHM_110 | 1/B/32:36, 1/B/42:46 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.11 | |
| IL_7NHM_111 | 1/B/69:77, 1/B/94:102 | Bacterial 5S Loop E | homologous IL_7A0S_106 IL_56455.6 | |
| IL_7NHM_112 | 1/B/78:80, 1/B/91:93 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_07785.1 | |
| IL_7NHM_113 | 1/a/31:33, 1/a/560:561 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_7NHM_114 | 1/a/45:46, 1/a/404:406 | Single bulged A | homologous IL_5J7L_002 IL_31462.5 | |
| IL_7NHM_115 | 1/a/48:53, 1/a/367:369 | No text annotation | homologous IL_5J7L_003 IL_14177.2 | |
| IL_7NHM_116 | 1/a/55:57, 1/a/364:365 | Minor groove platform | homologous IL_4LFB_004 IL_51454.2 | |
| IL_7NHM_117 | 1/a/64:67, 1/a/102:103 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_7NHM_118 | 1/a/68:70, 1/a/99:101 | Isolated non-canonical cWW pair | homologous IL_6CZR_118 NA | |
| IL_7NHM_119 | 1/a/128:131, 1/a/239:240 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_7NHM_120 | 1/a/132:136, 1/a/235:238 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_7NHM_121 | 1/a/147:153, 1/a/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_7NHM_122 | 1/a/154:156, 1/a/165:167 | Isolated non-canonical cWW pair | geometric IL_2O3V_001 IL_28037.2 | |
| IL_7NHM_123 | 1/a/184:185, 1/a/206:208 | No text annotation | ||
| IL_7NHM_124 | 1/a/250:255, 1/a/285:292 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_7NHM_125 | 1/a/257:260, 1/a/282:283 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_7NHM_126 | 1/a/300:301, 1/a/312:316 | C-loop | homologous IL_5J7L_016 IL_03109.3 | |
| IL_7NHM_127 | 1/a/375:377, 1/a/400:401 | Single bulged U | homologous IL_6CZR_126 NA | |
| IL_7NHM_128 | 1/a/379:383, 1/a/397:398 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_7NHM_129 | 1/a/383:384, 1/a/395:397 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_7NHM_130 | 1/a/417:424, 1/a/435:441 | No text annotation | homologous IL_5J7L_020 IL_28026.3 | |
| IL_7NHM_131 | 1/a/454:458, 1/a/491:496 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_7NHM_132 | 1/a/458:464, 1/a/485:491 | No text annotation | ||
| IL_7NHM_133 | 1/a/512:519, 1/a/548:549 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_7NHM_134 | 1/a/523:529, 1/a/536:544 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_7NHM_135 | 1/a/577:583, 1/a/890:891 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_7NHM_136 | 1/a/588:592, 1/a/765:769 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_7NHM_137 | 1/a/602:604, 1/a/652:653 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_7NHM_138 | 1/a/605:606, 1/a/648:651 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_7NHM_139 | 1/a/612:613, 1/a/640:642 | Single bulged U | geometric IL_4C7O_001 IL_89505.4 | |
| IL_7NHM_184 | 1/a/612:620, 1/a/636:642 | No text annotation | ||
| IL_7NHM_140 | 1/a/613:620, 1/a/636:640 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_7NHM_141 | 1/a/662:663, 1/a/759:762 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_7NHM_142 | 1/a/664:666, 1/a/755:758 | No text annotation | geometric IL_6CZR_136 NA | |
| IL_7NHM_143 | 1/a/670:674, 1/a/748:751 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_7NHM_185 | 1/a/681:685, 1/a/721:725 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_7NHM_145 | 1/a/692:696, 1/a/707:714 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_7NHM_146 | 1/a/782:787, 1/a/811:813 | Other IL | geometric IL_4V88_435 NA | |
| IL_7NHM_147 | 1/a/787:791, 1/a/807:811 | tSH-tHW-tHS | geometric IL_5J7L_037 IL_17136.7 | |
| IL_7NHM_148 | 1/a/897:904, 1/a/915:920 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_7NHM_149 | 1/a/932:933, 1/a/1404:1406 | Single bulged A | homologous IL_5J7L_039 IL_31462.5 | |
| IL_7NHM_150 | 1/a/935:937, 1/a/1401:1402 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
| IL_7NHM_151 | 1/a/943:945, 1/a/1391:1395 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_7NHM_152 | 1/a/963:964, 1/a/1237:1239 | Minor groove platform | homologous IL_4LFB_038 IL_51454.2 | |
| IL_7NHM_153 | 1/a/1003:1007, 1/a/1056:1057 | Minor groove platform | geometric IL_5J7L_043 IL_47078.3 | |
| IL_7NHM_154 | 1/a/1008:1009, 1/a/1053:1055 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_7NHM_156 | 1/a/1060:1062, 1/a/1219:1220 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_7NHM_157 | 1/a/1064:1068, 1/a/1215:1217 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_7NHM_158 | 1/a/1069:1070, 1/a/1210:1214 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_7NHM_159 | 1/a/1072:1073, 1/a/1206:1208 | Single bulged A | geometric IL_5J7L_049 IL_31462.5 | |
| IL_7NHM_160 | 1/a/1073:1075, 1/a/1204:1206 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_7NHM_161 | 1/a/1136:1139, 1/a/1156:1160 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_7NHM_162 | 1/a/1141:1144, 1/a/1153:1154 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_7NHM_163 | 1/a/1169:1172, 1/a/1186:1192 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_7NHM_164 | 1/a/1258:1264, 1/a/1295:1301 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_7NHM_165 | 1/a/1266:1269, 1/a/1288:1293 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_7NHM_166 | 1/a/1270:1274, 1/a/1283:1287 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_7NHM_167 | 1/a/1314:1319, 1/a/1340:1345 | No text annotation | geometric IL_4LFB_055 IL_85536.2 | |
| IL_7NHM_168 | 1/a/1410:1412, 1/a/1513:1516 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_7NHM_169 | 1/a/1412:1415, 1/a/1509:1513 | No text annotation | geometric IL_4V88_464 NA | |
| IL_7NHM_170 | 1/a/1416:1418, 1/a/1506:1508 | Isolated non-canonical cWW pair | geometric IL_5MWI_005 NA | |
| IL_7NHM_171 | 1/a/1418:1420, 1/a/1503:1506 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_7NHM_172 | 1/a/1423:1425, 1/a/1498:1500 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_7NHM_173 | 1/a/1427:1430, 1/a/1493:1496 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_7NHM_174 | 1/a/1435:1438, 1/a/1485:1488 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_7NHM_175 | 1/a/1441:1446, 1/a/1478:1482 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_7NHM_176 | 1/a/1446:1448, 1/a/1476:1478 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_87907.2 | |
| IL_7NHM_177 | 1/a/1451:1454, 1/a/1471:1473 | No text annotation | geometric IL_8VTW_081 NA | |
| IL_7NHM_178 | 1/a/1456:1459, 1/a/1467:1469 | No text annotation | homologous IL_5J7L_065 IL_31531.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7NHM_180 | No text annotation | ||
| IL_7NHM_093 | Major groove platform with extra pair | ||
| IL_7NHM_183 | No text annotation | ||
| IL_7NHM_144 | No text annotation | ||
| IL_7NHM_155 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7NHM_001 | 1/A/30:31, 1/A/520:527, 1/A/554:555 | No text annotation | homologous J3_5J7L_036 J3_60031.2 | |
| J3_7NHM_028 | 1/A/30:31, 1/A/520:530, 1/A/541:555 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_7NHM_029 | 1/A/32:35, 1/A/491:507, 1/A/514:519 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_7NHM_002 | 1/A/56:67, 1/A/74:76, 1/A/109:113 | No text annotation | homologous J3_4WF9_001 J3_47707.1 | |
| J3_7NHM_003 | 1/A/272:276, 1/A/295:302, 1/A/415:416 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_7NHM_030 | 1/A/340:344, 1/A/359:368, 1/A/380:384 | No text annotation | homologous J3_4WF9_015 J3_46299.2 | |
| J3_7NHM_004 | 1/A/728:734, 1/A/818:820, 1/A/836:839 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_7NHM_005 | 1/A/743:745, 1/A/777:781, 1/A/805:808 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_7NHM_006 | 1/A/1099:1101, 1/A/1125:1131, 1/A/1146:1148 | No text annotation | homologous J3_5J7L_040 J3_28621.5 | |
| J3_7NHM_007 | 1/A/1335:1340, 1/A/1669:1671, 1/A/1683:1686 | No text annotation | homologous J3_4WF9_004 J3_32852.6 | |
| J3_7NHM_008 | 1/A/1342:1346, 1/A/1649:1655, 1/A/1664:1667 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
| J3_7NHM_009 | 1/A/1381:1387, 1/A/1418:1422, 1/A/1439:1440 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_7NHM_032 | 1/A/1468:1473, 1/A/1611:1612, 1/A/1615:1621 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_7NHM_033 | 1/A/1707:1718, 1/A/2017:2019, 1/A/2023:2024 | No text annotation | ||
| J3_7NHM_010 | 1/A/2118:2120, 1/A/2223:2228, 1/A/2249:2255 | No text annotation | homologous J3_4WF9_007 J3_07703.1 | |
| J3_7NHM_034 | 1/A/2309:2311, 1/A/2411:2422, 1/A/2448:2454 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_7NHM_011 | 1/A/2322:2324, 1/A/2348:2350, 1/A/2359:2364 | No text annotation | homologous J3_4WF9_008 J3_61124.2 | |
| J3_7NHM_012 | 1/A/2544:2547, 1/A/2572:2574, 1/A/2588:2594 | No text annotation | homologous J3_4WF9_009 J3_32601.5 | |
| J3_7NHM_013 | 1/A/2816:2817, 1/A/2826:2831, 1/A/2909:2913 | No text annotation | homologous J3_7RQB_013 NA | |
| J3_7NHM_014 | 1/A/2834:2835, 1/A/2851:2856, 1/A/2902:2906 | No text annotation | homologous J3_7RQB_014 NA | |
| J3_7NHM_015 | 1/B/9:14, 1/B/66:68, 1/B/103:106 | No text annotation | ||
| J3_7NHM_016 | 1/a/47:48, 1/a/369:375, 1/a/401:403 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_7NHM_035 | 1/a/47:53, 1/a/367:375, 1/a/401:403 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_7NHM_017 | 1/a/594:596, 1/a/659:662, 1/a/762:763 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_7NHM_036 | 1/a/594:596, 1/a/659:663, 1/a/759:763 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_7NHM_018 | 1/a/680:681, 1/a/725:733, 1/a/740:742 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_7NHM_019 | 1/a/834:837, 1/a/867:871, 1/a/878:884 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_7NHM_020 | 1/a/946:949, 1/a/1355:1361, 1/a/1383:1390 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_7NHM_021 | 1/a/953:956, 1/a/1246:1248, 1/a/1348:1351 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_7NHM_022 | 1/a/965:972, 1/a/983:994, 1/a/1232:1236 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_7NHM_023 | 1/a/1000:1003, 1/a/1057:1059, 1/a/1221:1226 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_7NHM_037 | 1/a/1000:1007, 1/a/1056:1059, 1/a/1221:1226 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_7NHM_024 | 1/a/1075:1080, 1/a/1119:1125, 1/a/1198:1204 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_7NHM_039 | 1/a/1085:1086, 1/a/1095:1098, 1/a/1111:1114 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_7NHM_026 | 1/a/1128:1130, 1/a/1166:1169, 1/a/1192:1195 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_7NHM_038 | 1/a/1128:1130, 1/a/1166:1172, 1/a/1186:1195 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_7NHM_027 | 1/a/1248:1252, 1/a/1307:1314, 1/a/1345:1348 | No text annotation | homologous J3_5J7L_011 J3_37047.6 | |
| J4_7NHM_001 | 1/A/271:272, 1/A/416:421, 1/A/445:452, 1/A/467:470 | No text annotation | homologous J4_4WF9_001 J4_45801.6 | |
| J4_7NHM_002 | 1/A/340:344, 1/A/359:362, 1/A/366:368, 1/A/380:384 | No text annotation | homologous J4_7A0S_002 J4_71729.5 | |
| J4_7NHM_003 | 1/A/644:647, 1/A/669:673, 1/A/680:683, 1/A/695:701 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_7NHM_004 | 1/A/1308:1313, 1/A/1331:1332, 1/A/1689:1692, 1/A/2036:2037 | No text annotation | homologous J4_4WF9_004 J4_64571.5 | |
| J4_7NHM_005 | 1/A/1347:1351, 1/A/1375:1380, 1/A/1441:1442, 1/A/1641:1648 | No text annotation | homologous J4_4WF9_005 J4_69051.6 | |
| J4_7NHM_006 | 1/A/1350:1351, 1/A/1375:1380, 1/A/1441:1442, 1/A/1641:1647 | No text annotation | homologous J4_4WF9_006 J4_10313.5 | |
| J4_7NHM_007 | 1/A/1488:1490, 1/A/1510:1511, 1/A/1570:1574, 1/A/1590:1594 | No text annotation | ||
| J4_7NHM_008 | 1/A/1799:1803, 1/A/1815:1819, 1/A/1854:1857, 1/A/2002:2006 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_7NHM_009 | 1/A/1860:1862, 1/A/1932:1933, 1/A/1951:1960, 1/A/1994:1999 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_7NHM_010 | 1/A/2312:2316, 1/A/2370:2374, 1/A/2397:2399, 1/A/2408:2410 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_7NHM_011 | 1/A/2670:2673, 1/A/2701:2703, 1/A/2758:2762, 1/A/2796:2798 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_7NHM_012 | 1/D/7:10, 1/D/26:28, 1/D/44:50, 1/D/66:67 | No text annotation | homologous J4_9DFC_015 J4_70449.27 | |
| J4_7NHM_013 | 1/a/114:122, 1/a/246:248, 1/a/294:297, 1/a/319:320 | No text annotation | ||
| J4_7NHM_014 | 1/a/142:144, 1/a/178:185, 1/a/206:213, 1/a/227:229 | No text annotation | ||
| J4_7NHM_015 | 1/a/583:585, 1/a/772:777, 1/a/818:829, 1/a/889:890 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J5_7NHM_001 | 1/A/47:54, 1/A/115:120, 1/A/129:130, 1/A/149:151, 1/A/178:180 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_7NHM_002 | 1/A/271:276, 1/A/295:302, 1/A/415:421, 1/A/445:452, 1/A/467:470 | No text annotation | ||
| J5_7NHM_003 | 1/A/576:578, 1/A/603:607, 1/A/620:622, 1/A/1299:1300, 1/A/2044:2045 | No text annotation | homologous J5_4WF9_003 J5_43153.5 | |
| J5_7NHM_004 | 1/A/627:632, 1/A/713:716, 1/A/854:857, 1/A/1234:1235, 1/A/1288:1294 | No text annotation | homologous J5_4WF9_004 J5_74302.5 | |
| J5_7NHM_005 | 1/A/1718:1726, 1/A/1750:1751, 1/A/1778:1779, 1/A/1783:1791, 1/A/2015:2017 | No text annotation | homologous J5_4WF9_005 J5_62523.6 | |
| J5_7NHM_006 | 1/A/2084:2091, 1/A/2473:2480, 1/A/2527:2534, 1/A/2609:2615, 1/A/2633:2638 | No text annotation | ||
| J5_7NHM_007 | 1/A/2101:2104, 1/A/2270:2273, 1/A/2285:2286, 1/A/2308:2309, 1/A/2454:2462 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_7NHM_008 | 1/a/37:40, 1/a/411:414, 1/a/444:449, 1/a/501:508, 1/a/553:556 | No text annotation | ||
| J5_7NHM_009 | 1/a/59:62, 1/a/105:112, 1/a/322:324, 1/a/345:347, 1/a/358:362 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J6_7NHM_001 | 1/A/45:46, 1/A/181:186, 1/A/217:227, 1/A/234:238, 1/A/265:269, 1/A/472:479 | No text annotation | ||
| J6_7NHM_002 | 1/A/2101:2104, 1/A/2270:2273, 1/A/2285:2286, 1/A/2308:2311, 1/A/2411:2422, 1/A/2448:2462 | No text annotation | ||
| J7_7NHM_001 | 1/A/8:15, 1/A/570:576, 1/A/2045:2050, 1/A/2067:2070, 1/A/2652:2657, 1/A/2815:2816, 1/A/2913:2914 | No text annotation | ||
| J7_7NHM_002 | 1/A/862:867, 1/A/880:881, 1/A/987:990, 1/A/1015:1020, 1/A/1031:1035, 1/A/1207:1208, 1/A/1224:1229 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7NHM_031 | No text annotation | ||
| J3_7NHM_025 | No text annotation |
Coloring options: