8BQX Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8BQX_001 | 1/2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_8BQX_002 | 1/2/70:81 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_8BQX_003 | 1/2/154:160 | GNRA related | homologous HL_4V88_188 NA | |
| HL_8BQX_004 | 1/2/190:195 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_8BQX_005 | 1/2/230:235 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_8BQX_006 | 1/2/243:250 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_8BQX_007 | 1/2/276:279 | Mini UNCG | geometric HL_4WF9_037 HL_48778.2 | |
| HL_8BQX_008 | 1/2/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_8BQX_009 | 1/2/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_8BQX_010 | 1/2/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_8BQX_011 | 1/2/414:419 | UNCG | homologous HL_4V88_196 NA | |
| HL_8BQX_012 | 1/2/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_8BQX_013 | 1/2/491:496 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_8BQX_116 | 1/2/517:535 | No text annotation | ||
| HL_8BQX_014 | 1/2/520:532 | No text annotation | homologous HL_4V88_199 NA | |
| HL_8BQX_015 | 1/2/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_8BQX_018 | 1/2/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_8BQX_019 | 1/2/777:783 | No text annotation | homologous HL_8P9A_207 HL_48417.5 | |
| HL_8BQX_020 | 1/2/829:843 | Pseudoknot geometry | homologous HL_4V88_205 NA | |
| HL_8BQX_021 | 1/2/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_8BQX_022 | 1/2/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_8BQX_023 | 1/2/997:1007 | No text annotation | homologous HL_4V88_208 NA | |
| HL_8BQX_024 | 1/2/1055:1064 | No text annotation | homologous HL_8P9A_212 HL_97917.2 | |
| HL_8BQX_025 | 1/2/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_8BQX_026 | 1/2/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_8BQX_027 | 1/2/1188:1197 | No text annotation | homologous HL_4V88_212 NA | |
| HL_8BQX_028 | 1/2/1238:1247 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_8BQX_029 | 1/2/1296:1301 | GNRA | homologous HL_4V88_214 NA | |
| HL_8BQX_030 | 1/2/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_8BQX_031 | 1/2/1359:1364 | No text annotation | homologous HL_4V88_216 NA | |
| HL_8BQX_032 | 1/2/1396:1402 | GNRA | homologous HL_4V88_217 NA | |
| HL_8BQX_033 | 1/2/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
| HL_8BQX_034 | 1/2/1550:1561 | No text annotation | homologous HL_4V88_219 NA | |
| HL_8BQX_035 | 1/2/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_8BQX_036 | 1/2/1698:1703 | No text annotation | ||
| HL_8BQX_037 | 1/2/1778:1783 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_8BQX_038 | 1/BQ/38:45 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_8BQX_039 | 1/BQ/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_8BQX_040 | 1/BQ/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_8BQX_041 | 1/BQ/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_8BQX_042 | 1/BQ/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_8BQX_043 | 1/BQ/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_8BQX_044 | 1/BQ/216:224 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_8BQX_045 | 1/BQ/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_8BQX_046 | 1/BQ/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_8BQX_047 | 1/BQ/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_8BQX_048 | 1/BQ/382:387 | GNRA | homologous HL_5TBW_011 NA | |
| HL_8BQX_049 | 1/BQ/544:547 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_8BQX_050 | 1/BQ/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_8BQX_051 | 1/BQ/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_8BQX_052 | 1/BQ/686:694 | No text annotation | homologous HL_5TBW_015 NA | |
| HL_8BQX_053 | 1/BQ/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_8BQX_054 | 1/BQ/732:737 | GNRA | homologous HL_5TBW_017 NA | |
| HL_8BQX_055 | 1/BQ/763:768 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_8BQX_056 | 1/BQ/844:849 | GNRA | homologous HL_5TBW_019 NA | |
| HL_8BQX_057 | 1/BQ/876:885 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_8BQX_058 | 1/BQ/910:918 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_8BQX_059 | 1/BQ/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_8BQX_060 | 1/BQ/1023:1029 | GNRA | homologous HL_5TBW_023 NA | |
| HL_8BQX_061 | 1/BQ/1076:1083 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_8BQX_062 | 1/BQ/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_8BQX_063 | 1/BQ/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_8BQX_064 | 1/BQ/1239:1249 | No text annotation | homologous HL_5TBW_027 NA | |
| HL_8BQX_065 | 1/BQ/1266:1275 | No text annotation | homologous HL_5TBW_028 NA | |
| HL_8BQX_066 | 1/BQ/1347:1357 | No text annotation | homologous HL_5TBW_029 NA | |
| HL_8BQX_067 | 1/BQ/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8BQX_068 | 1/BQ/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_8BQX_069 | 1/BQ/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_8BQX_070 | 1/BQ/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_8BQX_071 | 1/BQ/1565:1574 | No text annotation | ||
| HL_8BQX_072 | 1/BQ/1599:1608 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_8BQX_073 | 1/BQ/1634:1639 | GNRA | homologous HL_8C3A_036 NA | |
| HL_8BQX_074 | 1/BQ/1680:1688 | No text annotation | homologous HL_5TBW_037 NA | |
| HL_8BQX_075 | 1/BQ/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_8BQX_076 | 1/BQ/1759:1766 | No text annotation | homologous HL_8P9A_150 HL_25967.2 | |
| HL_8BQX_077 | 1/BQ/1792:1796 | Mini UNCG | homologous HL_5TBW_040 NA | |
| HL_8BQX_078 | 1/BQ/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_8BQX_079 | 1/BQ/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_8BQX_080 | 1/BQ/1923:1928 | UNCG | geometric HL_5Y85_004 HL_34617.5 | |
| HL_8BQX_081 | 1/BQ/2008:2013 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_8BQX_082 | 1/BQ/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_8BQX_083 | 1/BQ/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_8BQX_084 | 1/BQ/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_8BQX_085 | 1/BQ/2220:2225 | GNRA | homologous HL_5TBW_048 NA | |
| HL_8BQX_086 | 1/BQ/2253:2263 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_8BQX_087 | 1/BQ/2292:2300 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_8BQX_088 | 1/BQ/2369:2378 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_8BQX_089 | 1/BQ/2451:2493 | No text annotation | ||
| HL_8BQX_090 | 1/BQ/2535:2544 | No text annotation | ||
| HL_8BQX_091 | 1/BQ/2568:2573 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8BQX_092 | 1/BQ/2616:2624 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_8BQX_093 | 1/BQ/2633:2645 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_8BQX_094 | 1/BQ/2673:2681 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_8BQX_095 | 1/BQ/2693:2700 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_8BQX_096 | 1/BQ/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_8BQX_097 | 1/BQ/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_8BQX_098 | 1/BQ/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_8BQX_099 | 1/BQ/2840:2848 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_8BQX_100 | 1/BQ/2897:2904 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_8BQX_101 | 1/BQ/2920:2926 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_8BQX_102 | 1/BQ/2963:2968 | GNRA | homologous HL_5TBW_064 NA | |
| HL_8BQX_103 | 1/BQ/3025:3030 | GNRA | homologous HL_8C3A_066 NA | |
| HL_8BQX_104 | 1/BQ/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8BQX_105 | 1/BQ/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8BQX_106 | 1/BQ/3194:3197 | No text annotation | homologous HL_5TBW_068 NA | |
| HL_8BQX_107 | 1/BQ/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_8BQX_108 | 1/BQ/3303:3311 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_8BQX_109 | 1/BQ/3350:3353 | Mini UNCG | homologous HL_8C3A_072 NA | |
| HL_8BQX_110 | 1/BR/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_8BQX_111 | 1/BR/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_8BQX_112 | 1/BS/47:56 | Pseudoknot with intercalation | geometric HL_7A0S_001 HL_93438.2 | |
| HL_8BQX_113 | 1/BS/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_8BQX_114 | 1/BS/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_8BQX_115 | 1/BS/124:129 | No text annotation | homologous HL_5TBW_076 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8BQX_016 | No text annotation | ||
| HL_8BQX_017 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8BQX_001 | 1/2/24:26, 1/2/600:601 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_8BQX_002 | 1/2/35:37, 1/2/471:473 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_8BQX_003 | 1/2/37:41, 1/2/466:471 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_8BQX_004 | 1/2/42:48, 1/2/431:433 | No text annotation | geometric IL_4V88_387 NA | |
| IL_8BQX_005 | 1/2/50:52, 1/2/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_8BQX_006 | 1/2/58:63, 1/2/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_8BQX_007 | 1/2/64:69, 1/2/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_8BQX_008 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_8BQX_009 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_8BQX_010 | 1/2/117:122, 1/2/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_8BQX_011 | 1/2/144:149, 1/2/165:171 | tWH-tWH-tHW-tHW | geometric IL_4LFB_009 IL_12745.1 | |
| IL_8BQX_012 | 1/2/150:152, 1/2/162:164 | No text annotation | geometric IL_5E81_376 NA | |
| IL_8BQX_013 | 1/2/186:189, 1/2/196:199 | Double sheared | homologous IL_4V88_396 NA | |
| IL_8BQX_014 | 1/2/204:206, 1/2/259:263 | Major groove platform with extra cWW | geometric IL_7A0S_019 IL_51387.2 | |
| IL_8BQX_015 | 1/2/206:208, 1/2/257:259 | Isolated non-canonical cWW pair | homologous IL_4V88_398 NA | |
| IL_8BQX_016 | 1/2/265:267, 1/2/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_8BQX_017 | 1/2/270:273, 1/2/283:285 | No text annotation | homologous IL_4V88_400 NA | |
| IL_8BQX_018 | 1/2/275:276, 1/2/279:281 | Single bulged U | geometric IL_5F9R_003 IL_89505.4 | |
| IL_8BQX_019 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_8BQX_020 | 1/2/318:323, 1/2/345:346 | No text annotation | homologous IL_4V88_403 NA | |
| IL_8BQX_021 | 1/2/363:365, 1/2/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_8BQX_022 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_8BQX_023 | 1/2/411:413, 1/2/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_8BQX_024 | 1/2/439:441, 1/2/463:464 | Single bulged U | geometric IL_4V88_407 NA | |
| IL_8BQX_025 | 1/2/443:447, 1/2/460:461 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_8BQX_026 | 1/2/447:448, 1/2/458:460 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_8BQX_027 | 1/2/481:482, 1/2/505:507 | Single bulged A | homologous IL_4V88_409 NA | |
| IL_8BQX_028 | 1/2/514:516, 1/2/536:543 | No text annotation | ||
| IL_8BQX_029 | 1/2/517:520, 1/2/532:535 | Double sheared | geometric IL_4WF9_016 IL_09705.15 | |
| IL_8BQX_030 | 1/2/550:557, 1/2/587:588 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_8BQX_031 | 1/2/557:559, 1/2/586:587 | Single bulged U | homologous IL_4V88_414 NA | |
| IL_8BQX_032 | 1/2/562:568, 1/2/575:583 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_8BQX_033 | 1/2/616:622, 1/2/1104:1105 | No text annotation | homologous IL_4V88_416 NA | |
| IL_8BQX_034 | 1/2/624:626, 1/2/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_8BQX_035 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_8BQX_036 | 1/2/646:648, 1/2/686:688 | Isolated non-canonical cWW pair | homologous IL_4V88_419 NA | |
| IL_8BQX_241 | 1/2/701:703, 1/2/736:737 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_8BQX_037 | 1/2/746:747, 1/2/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_8BQX_038 | 1/2/748:750, 1/2/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_8BQX_039 | 1/2/751:759, 1/2/791:798 | No text annotation | homologous IL_4V88_425 NA | |
| IL_8BQX_040 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_50694.7 | |
| IL_8BQX_260 | 1/2/868:869, 1/2/958:960 | Single bulged U | geometric IL_8P9A_281 IL_89505.4 | |
| IL_8BQX_243 | 1/2/871:873, 1/2/954:956 | Isolated non-canonical cWW pair | geometric IL_2R8S_001 IL_87907.2 | |
| IL_8BQX_043 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_8BQX_044 | 1/2/885:888, 1/2/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_8BQX_045 | 1/2/893:899, 1/2/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_8BQX_046 | 1/2/985:990, 1/2/1014:1016 | Other IL | homologous IL_4V88_435 NA | |
| IL_8BQX_047 | 1/2/990:994, 1/2/1010:1014 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_8BQX_048 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_8BQX_049 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_8BQX_050 | 1/2/1051:1053, 1/2/1066:1067 | No text annotation | ||
| IL_8BQX_051 | 1/2/1111:1118, 1/2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_8BQX_052 | 1/2/1146:1147, 1/2/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_8BQX_053 | 1/2/1149:1151, 1/2/1627:1628 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_8BQX_054 | 1/2/1157:1160, 1/2/1617:1621 | C-loop | homologous IL_4V88_443 NA | |
| IL_8BQX_055 | 1/2/1173:1175, 1/2/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_8BQX_056 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_8BQX_057 | 1/2/1213:1215, 1/2/1448:1450 | Isolated non-canonical cWW pair | homologous IL_4V88_446 NA | |
| IL_8BQX_058 | 1/2/1224:1230, 1/2/1257:1259 | No text annotation | ||
| IL_8BQX_244 | 1/2/1224:1233, 1/2/1252:1259 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_8BQX_059 | 1/2/1230:1233, 1/2/1252:1257 | No text annotation | ||
| IL_8BQX_060 | 1/2/1234:1236, 1/2/1249:1251 | No text annotation | homologous IL_4V88_448 NA | |
| IL_8BQX_061 | 1/2/1268:1270, 1/2/1440:1441 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_8BQX_245 | 1/2/1272:1276, 1/2/1436:1438 | Isolated cWS basepair | geometric IL_4V88_450 NA | |
| IL_8BQX_246 | 1/2/1272:1278, 1/2/1430:1438 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_8BQX_063 | 1/2/1276:1278, 1/2/1430:1436 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_8BQX_064 | 1/2/1280:1281, 1/2/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_8BQX_065 | 1/2/1290:1292, 1/2/1323:1325 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_8BQX_066 | 1/2/1306:1308, 1/2/1317:1318 | Minor groove platform | geometric IL_4V88_454 NA | |
| IL_8BQX_067 | 1/2/1339:1342, 1/2/1383:1385 | Isolated non-canonical cWW pair | homologous IL_4V88_455 NA | |
| IL_8BQX_068 | 1/2/1345:1348, 1/2/1377:1380 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_8BQX_069 | 1/2/1352:1354, 1/2/1369:1373 | No text annotation | homologous IL_8C3A_464 NA | |
| IL_8BQX_070 | 1/2/1389:1391, 1/2/1407:1412 | No text annotation | homologous IL_8C3A_465 NA | |
| IL_8BQX_071 | 1/2/1480:1487, 1/2/1519:1527 | No text annotation | homologous IL_4V88_459 NA | |
| IL_8BQX_072 | 1/2/1488:1494, 1/2/1513:1518 | 180 degree turn | homologous IL_4V88_460 NA | |
| IL_8BQX_073 | 1/2/1495:1498, 1/2/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_8BQX_074 | 1/2/1540:1545, 1/2/1566:1571 | No text annotation | geometric IL_4V88_462 NA | |
| IL_8BQX_075 | 1/2/1636:1638, 1/2/1764:1767 | No text annotation | geometric IL_4V88_463 NA | |
| IL_8BQX_076 | 1/2/1638:1641, 1/2/1760:1764 | No text annotation | homologous IL_4V88_464 NA | |
| IL_8BQX_077 | 1/2/1642:1644, 1/2/1757:1759 | Isolated non-canonical cWW pair | geometric IL_5MWI_002 IL_87907.2 | |
| IL_8BQX_078 | 1/2/1644:1647, 1/2/1753:1757 | No text annotation | homologous IL_8CRE_469 IL_11399.2 | |
| IL_8BQX_079 | 1/2/1650:1652, 1/2/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_8BQX_080 | 1/2/1653:1656, 1/2/1744:1747 | Double sheared | homologous IL_4V88_468 NA | |
| IL_8BQX_081 | 1/2/1656:1658, 1/2/1743:1744 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_8BQX_082 | 1/2/1665:1667, 1/2/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_8BQX_083 | 1/2/1669:1672, 1/2/1729:1732 | Double sheared | geometric IL_1SAQ_002 NA | |
| IL_8BQX_084 | 1/2/1672:1674, 1/2/1727:1729 | Isolated non-canonical cWW pair | homologous IL_4V88_472 NA | |
| IL_8BQX_085 | 1/2/1675:1678, 1/2/1723:1726 | Tandem non-canonical cWW pairs | geometric IL_4V88_473 NA | |
| IL_8BQX_086 | 1/2/1678:1682, 1/2/1719:1723 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_8BQX_087 | 1/2/1688:1690, 1/2/1711:1713 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_87907.2 | |
| IL_8BQX_088 | 1/2/1693:1696, 1/2/1706:1708 | No text annotation | ||
| IL_8BQX_089 | 1/2/1696:1697, 1/2/1704:1706 | Single stack bend | geometric IL_4WF9_089 IL_26793.1 | |
| IL_8BQX_091 | 1/BQ/7:8, 1/BS/150:152 | Single bulged C | homologous IL_5TBW_002 NA | |
| IL_8BQX_092 | 1/BQ/13:15, 1/BS/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_8BQX_093 | 1/BQ/27:28, 1/BQ/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_8BQX_094 | 1/BQ/31:38, 1/BQ/45:53 | tSH-tHW-tHH-tHS | geometric IL_5TBW_005 NA | |
| IL_8BQX_095 | 1/BQ/82:89, 1/BQ/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_8BQX_096 | 1/BQ/123:124, 1/BQ/144:149 | No text annotation | homologous IL_5TBW_007 NA | |
| IL_8BQX_097 | 1/BQ/125:127, 1/BQ/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_8BQX_098 | 1/BQ/163:167, 1/BQ/255:258 | No text annotation | ||
| IL_8BQX_099 | 1/BQ/169:171, 1/BQ/247:253 | No text annotation | ||
| IL_8BQX_101 | 1/BQ/177:178, 1/BQ/238:241 | No text annotation | geometric IL_5TBW_501 NA | |
| IL_8BQX_102 | 1/BQ/189:191, 1/BQ/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8BQX_103 | 1/BQ/337:339, 1/BS/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_8BQX_104 | 1/BQ/376:379, 1/BQ/390:403 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_8BQX_105 | 1/BQ/404:410, 1/BS/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_8BQX_106 | 1/BQ/429:431, 1/BQ/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_8BQX_107 | 1/BQ/435:495, 1/BQ/618:624 | No text annotation | ||
| IL_8BQX_108 | 1/BQ/512:513, 1/BQ/577:579 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_8BQX_109 | 1/BQ/517:525, 1/BQ/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_8BQX_110 | 1/BQ/531:538, 1/BQ/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_8BQX_111 | 1/BQ/668:670, 1/BQ/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_8BQX_112 | 1/BQ/680:684, 1/BQ/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_8BQX_113 | 1/BQ/725:728, 1/BQ/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_8BQX_114 | 1/BQ/752:753, 1/BQ/779:781 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_8BQX_115 | 1/BQ/755:756, 1/BQ/775:777 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_8BQX_116 | 1/BQ/758:763, 1/BQ/768:773 | No text annotation | homologous IL_8C3A_028 NA | |
| IL_8BQX_117 | 1/BQ/803:805, 1/BQ/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_8BQX_118 | 1/BQ/805:809, 1/BQ/931:938 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_8BQX_119 | 1/BQ/833:834, 1/BQ/859:861 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_8BQX_120 | 1/BQ/834:838, 1/BQ/855:859 | Triple sheared | geometric IL_5J7L_263 IL_50730.2 | |
| IL_8BQX_121 | 1/BQ/869:872, 1/BQ/888:890 | Major groove platform with extra cWW | homologous IL_5TBW_031 NA | |
| IL_8BQX_122 | 1/BQ/873:875, 1/BQ/886:887 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_8BQX_123 | 1/BQ/907:909, 1/BQ/919:923 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_8BQX_124 | 1/BQ/954:956, 1/BQ/965:967 | Isolated non-canonical cWW pair | homologous IL_5TBW_034 NA | |
| IL_8BQX_125 | 1/BQ/969:970, 1/BQ/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_8BQX_126 | 1/BQ/977:982, 1/BQ/1101:1104 | No text annotation | ||
| IL_8BQX_127 | 1/BQ/983:985, 1/BQ/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_8BQX_128 | 1/BQ/991:997, 1/BQ/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5TBW_038 NA | |
| IL_8BQX_129 | 1/BQ/997:998, 1/BQ/1050:1052 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_8BQX_130 | 1/BQ/999:1004, 1/BQ/1046:1049 | C-loop | homologous IL_5TBW_040 NA | |
| IL_8BQX_131 | 1/BQ/1006:1009, 1/BQ/1041:1044 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_8BQX_132 | 1/BQ/1009:1011, 1/BQ/1039:1041 | Isolated non-canonical cWW pair | homologous IL_5TBW_042 NA | |
| IL_8BQX_133 | 1/BQ/1014:1018, 1/BQ/1034:1036 | Isolated non-canonical cWW with bulges | geometric IL_4V9F_097 IL_07785.1 | |
| IL_8BQX_134 | 1/BQ/1069:1071, 1/BQ/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_8BQX_135 | 1/BQ/1074:1076, 1/BQ/1083:1084 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_8BQX_136 | 1/BQ/1120:1122, 1/BQ/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_8BQX_137 | 1/BQ/1167:1171, 1/BQ/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8BQX_138 | 1/BQ/1173:1180, 1/BQ/1325:1326 | SSU/LSU pseudoknot | homologous IL_5TBW_049 NA | |
| IL_8BQX_139 | 1/BQ/1180:1182, 1/BQ/1324:1325 | Single bulged U | geometric IL_5TBW_050 NA | |
| IL_8BQX_140 | 1/BQ/1187:1194, 1/BQ/1314:1319 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_8BQX_141 | 1/BQ/1194:1205, 1/BQ/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_8BQX_142 | 1/BQ/1207:1209, 1/BQ/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_8BQX_143 | 1/BQ/1218:1226, 1/BQ/1283:1287 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_8BQX_144 | 1/BQ/1234:1239, 1/BQ/1249:1254 | No text annotation | ||
| IL_8BQX_145 | 1/BQ/1262:1266, 1/BQ/1275:1277 | Major groove platform with extra cWW | geometric IL_4V88_397 NA | |
| IL_8BQX_146 | 1/BQ/1376:1378, 1/BQ/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_8BQX_147 | 1/BQ/1385:1387, 1/BQ/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_8BQX_148 | 1/BQ/1388:1395, 1/BQ/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_8BQX_149 | 1/BQ/1398:1400, 1/BQ/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_8BQX_150 | 1/BQ/1444:1450, 1/BQ/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_8BQX_247 | 1/BQ/1501:1505, 1/BQ/1513:1515 | C-loop | homologous IL_8C3A_482 NA | |
| IL_8BQX_152 | 1/BQ/1532:1536, 1/BQ/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_8BQX_153 | 1/BQ/1618:1621, 1/BQ/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_8BQX_154 | 1/BQ/1623:1625, 1/BQ/1818:1822 | No text annotation | homologous IL_8C3A_071 NA | |
| IL_8BQX_155 | 1/BQ/1627:1631, 1/BQ/1811:1816 | No text annotation | geometric IL_5TBW_066 NA | |
| IL_8BQX_156 | 1/BQ/1645:1649, 1/BQ/1806:1810 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_8BQX_157 | 1/BQ/1661:1663, 1/BQ/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_8BQX_158 | 1/BQ/1669:1670, 1/BQ/1778:1780 | Single bulged C | homologous IL_8C3A_075 NA | |
| IL_8BQX_159 | 1/BQ/1670:1671, 1/BQ/1776:1778 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_8BQX_160 | 1/BQ/1694:1698, 1/BQ/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_8BQX_161 | 1/BQ/1702:1707, 1/BQ/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_8BQX_162 | 1/BQ/1711:1717, 1/BQ/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_8BQX_163 | 1/BQ/1883:1889, 1/BQ/2346:2349 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_8BQX_164 | 1/BQ/1895:1897, 1/BQ/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_8BQX_165 | 1/BQ/1898:1901, 1/BQ/2336:2337 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_8BQX_248 | 1/BQ/1898:1906, 1/BQ/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_8BQX_166 | 1/BQ/1901:1906, 1/BQ/2333:2336 | Intercalated tWH | geometric IL_4V9F_062 IL_76758.2 | |
| IL_8BQX_167 | 1/BQ/1918:1923, 1/BQ/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_8BQX_168 | 1/BQ/1940:1942, 1/BQ/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8BQX_169 | 1/BQ/1947:1948, 1/BQ/2098:2101 | No text annotation | homologous IL_5TBW_080 NA | |
| IL_8BQX_261 | 1/BQ/1949:1954, 1/BQ/2087:2097 | No text annotation | ||
| IL_8BQX_170 | 1/BQ/1961:1966, 1/BQ/2057:2080 | No text annotation | ||
| IL_8BQX_250 | 1/BQ/1961:1968, 1/BQ/2054:2080 | No text annotation | ||
| IL_8BQX_171 | 1/BQ/1966:1968, 1/BQ/2054:2057 | No text annotation | ||
| IL_8BQX_251 | 1/BQ/1969:1982, 1/BQ/2039:2053 | No text annotation | ||
| IL_8BQX_172 | 1/BQ/1988:1991, 1/BQ/2030:2033 | tSH-tHW | geometric IL_5UNE_005 IL_85033.2 | |
| IL_8BQX_173 | 1/BQ/1994:1996, 1/BQ/2025:2027 | Isolated cWH basepair | geometric IL_1M5K_004 NA | |
| IL_8BQX_174 | 1/BQ/2128:2129, 1/BQ/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_8BQX_175 | 1/BQ/2156:2161, 1/BQ/2173:2180 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_8BQX_176 | 1/BQ/2196:2199, 1/BQ/2245:2246 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_8BQX_177 | 1/BQ/2200:2201, 1/BQ/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_8BQX_178 | 1/BQ/2204:2206, 1/BQ/2237:2238 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_8BQX_253 | 1/BQ/2204:2210, 1/BQ/2235:2238 | No text annotation | ||
| IL_8BQX_179 | 1/BQ/2206:2210, 1/BQ/2235:2237 | No text annotation | ||
| IL_8BQX_180 | 1/BQ/2211:2217, 1/BQ/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_8BQX_181 | 1/BQ/2276:2277, 1/BQ/2307:2310 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_8BQX_182 | 1/BQ/2277:2288, 1/BQ/2304:2307 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_8BQX_183 | 1/BQ/2391:2394, 1/BQ/2986:2988 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_8BQX_184 | 1/BQ/2396:2398, 1/BQ/2981:2984 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_8BQX_185 | 1/BQ/2409:2411, 1/BQ/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_8BQX_186 | 1/BQ/2412:2413, 1/BQ/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_8BQX_187 | 1/BQ/2423:2425, 1/BQ/2604:2607 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_8BQX_188 | 1/BQ/2444:2445, 1/BQ/2501:2503 | Single stack bend | geometric IL_5J7L_269 IL_26793.1 | |
| IL_8BQX_189 | 1/BQ/2450:2451, 1/BQ/2493:2496 | No text annotation | ||
| IL_8BQX_190 | 1/BQ/2520:2526, 1/BQ/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_8BQX_191 | 1/BQ/2614:2615, 1/BQ/2625:2627 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_8BQX_192 | 1/BQ/2666:2668, 1/BQ/2686:2690 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_8BQX_193 | 1/BQ/2718:2721, 1/BQ/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_8BQX_256 | 1/BQ/2771:2774, 1/BQ/2786:2787 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_8BQX_195 | 1/BQ/2823:2824, 1/BQ/2865:2867 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_8BQX_196 | 1/BQ/2824:2826, 1/BQ/2863:2865 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_8BQX_197 | 1/BQ/2826:2828, 1/BQ/2862:2863 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_8BQX_198 | 1/BQ/2828:2830, 1/BQ/2858:2862 | Major groove minor groove platform with extra cWW | homologous IL_5TBW_105 NA | |
| IL_8BQX_199 | 1/BQ/2835:2839, 1/BQ/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_8BQX_200 | 1/BQ/2876:2877, 1/BQ/2949:2951 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_8BQX_201 | 1/BQ/2879:2881, 1/BQ/2943:2947 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_8BQX_202 | 1/BQ/2881:2882, 1/BQ/2940:2943 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_8BQX_203 | 1/BQ/2889:2891, 1/BQ/2912:2914 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_8BQX_257 | 1/BQ/2889:2892, 1/BQ/2909:2914 | No text annotation | homologous IL_8P9A_338 IL_07469.2 | |
| IL_8BQX_204 | 1/BQ/2891:2892, 1/BQ/2909:2912 | Major groove platform with intercalation | homologous IL_5TBW_111 NA | |
| IL_8BQX_205 | 1/BQ/2918:2920, 1/BQ/2926:2928 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_8BQX_206 | 1/BQ/2960:2961, 1/BQ/2970:2972 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_8BQX_207 | 1/BQ/3004:3007, 1/BQ/3139:3144 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_8BQX_208 | 1/BQ/3012:3014, 1/BQ/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_8BQX_209 | 1/BQ/3018:3025, 1/BQ/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_8BQX_210 | 1/BQ/3047:3051, 1/BQ/3091:3094 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_8BQX_211 | 1/BQ/3054:3059, 1/BQ/3084:3088 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_8BQX_212 | 1/BQ/3063:3064, 1/BQ/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_8BQX_213 | 1/BQ/3103:3107, 1/BQ/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_8BQX_214 | 1/BQ/3158:3159, 1/BQ/3291:3293 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_8BQX_215 | 1/BQ/3164:3166, 1/BQ/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_8BQX_216 | 1/BQ/3168:3170, 1/BQ/3280:3282 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_8BQX_217 | 1/BQ/3177:3179, 1/BQ/3210:3211 | Single bulged A | homologous IL_5TBW_123 NA | |
| IL_8BQX_218 | 1/BQ/3179:3188, 1/BQ/3204:3210 | No text annotation | geometric IL_5TBW_124 NA | |
| IL_8BQX_219 | 1/BQ/3193:3194, 1/BQ/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_8BQX_220 | 1/BQ/3225:3229, 1/BQ/3258:3260 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_8BQX_221 | 1/BQ/3233:3235, 1/BQ/3252:3254 | Isolated non-canonical cWW pair | geometric IL_5UNE_007 IL_87907.2 | |
| IL_8BQX_222 | 1/BQ/3235:3238, 1/BQ/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_5TBW_128 NA | |
| IL_8BQX_223 | 1/BQ/3300:3303, 1/BQ/3311:3314 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_8BQX_224 | 1/BQ/3318:3320, 1/BQ/3387:3388 | Single bulged U | geometric IL_5TBW_130 NA | |
| IL_8BQX_225 | 1/BQ/3324:3325, 1/BQ/3381:3383 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_8BQX_226 | 1/BQ/3328:3330, 1/BQ/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_8BQX_227 | 1/BQ/3332:3337, 1/BQ/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_8BQX_228 | 1/BQ/3340:3342, 1/BQ/3363:3364 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_8BQX_229 | 1/BQ/3342:3345, 1/BQ/3360:3363 | Double sheared; A in syn | geometric IL_5TBW_135 NA | |
| IL_8BQX_230 | 1/BQ/3349:3350, 1/BQ/3353:3356 | Multiple bulged bases | geometric IL_5TBW_136 NA | |
| IL_8BQX_231 | 1/BR/15:16, 1/BR/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_8BQX_232 | 1/BR/21:27, 1/BR/54:58 | No text annotation | ||
| IL_8BQX_259 | 1/BR/21:28, 1/BR/52:58 | No text annotation | ||
| IL_8BQX_233 | 1/BR/27:28, 1/BR/52:54 | Single stack bend | geometric IL_4V9F_005 IL_90729.1 | |
| IL_8BQX_234 | 1/BR/28:29, 1/BR/49:52 | Minor groove platform | geometric IL_5TBW_374 NA | |
| IL_8BQX_235 | 1/BR/29:30, 1/BR/47:49 | Single stack bend | homologous IL_5TBW_375 NA | |
| IL_8BQX_236 | 1/BR/32:36, 1/BR/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_8BQX_237 | 1/BR/72:80, 1/BR/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_8BQX_238 | 1/BR/84:87, 1/BR/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_8BQX_239 | 1/BS/64:66, 1/BS/93:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA | |
| IL_8BQX_240 | 1/BS/68:69, 1/BS/89:91 | Single bulged U | homologous IL_5TBW_146 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8BQX_242 | Isolated non-canonical cWW pair | ||
| IL_8BQX_041 | Isolated non-canonical cWW pair | ||
| IL_8BQX_042 | Tandem non-canonical cWW pairs | ||
| IL_8BQX_062 | Tandem non-canonical cWW pairs | ||
| IL_8BQX_090 | No text annotation | ||
| IL_8BQX_100 | Isolated non-canonical cWW pair | ||
| IL_8BQX_151 | No text annotation | ||
| IL_8BQX_249 | No text annotation | ||
| IL_8BQX_252 | No text annotation | ||
| IL_8BQX_254 | No text annotation | ||
| IL_8BQX_255 | Partly complementary | ||
| IL_8BQX_194 | Other IL | ||
| IL_8BQX_258 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8BQX_001 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_8BQX_032 | 1/2/41:48, 1/2/431:439, 1/2/464:466 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_8BQX_033 | 1/2/213:228, 1/2/237:243, 1/2/250:252 | No text annotation | ||
| J3_8BQX_002 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_8BQX_034 | 1/2/633:635, 1/2/861:866, 1/2/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_8BQX_003 | 1/2/760:763, 1/2/773:775, 1/2/785:790 | No text annotation | homologous J3_4V88_032 NA | |
| J3_8BQX_004 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_8BQX_005 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_8BQX_006 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation | homologous J3_4V88_035 NA | |
| J3_8BQX_007 | 1/2/1168:1171, 1/2/1468:1470, 1/2/1574:1577 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_8BQX_008 | 1/2/1180:1187, 1/2/1198:1209, 1/2/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_8BQX_009 | 1/2/1215:1220, 1/2/1263:1267, 1/2/1442:1448 | No text annotation | homologous J3_4V88_038 NA | |
| J3_8BQX_010 | 1/2/1283:1288, 1/2/1327:1332, 1/2/1419:1424 | No text annotation | homologous J3_4V88_039 NA | |
| J3_8BQX_011 | 1/2/1293:1294, 1/2/1303:1306, 1/2/1318:1322 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_8BQX_012 | 1/2/1336:1338, 1/2/1386:1389, 1/2/1412:1415 | No text annotation | homologous J3_4V88_040 NA | |
| J3_8BQX_035 | 1/2/1336:1338, 1/2/1386:1391, 1/2/1407:1415 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_8BQX_013 | 1/2/1470:1474, 1/2/1533:1540, 1/2/1571:1574 | No text annotation | homologous J3_4V88_041 NA | |
| J3_8BQX_014 | 1/BQ/113:123, 1/BQ/149:158, 1/BQ/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_8BQX_036 | 1/BQ/113:124, 1/BQ/144:158, 1/BQ/263:267 | No text annotation | ||
| J3_8BQX_037 | 1/BQ/185:189, 1/BQ/205:214, 1/BQ/226:231 | No text annotation | homologous J3_8P9A_044 J3_75408.1 | |
| J3_8BQX_038 | 1/BQ/340:356, 1/BQ/363:368, 1/BS/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_8BQX_015 | 1/BQ/369:376, 1/BQ/403:404, 1/BS/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_8BQX_039 | 1/BQ/369:379, 1/BQ/390:404, 1/BS/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_8BQX_016 | 1/BQ/502:503, 1/BQ/588:597, 1/BQ/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_8BQX_017 | 1/BQ/814:820, 1/BQ/905:907, 1/BQ/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_8BQX_018 | 1/BQ/828:831, 1/BQ/863:867, 1/BQ/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_8BQX_019 | 1/BQ/986:987, 1/BQ/1062:1066, 1/BQ/1092:1098 | No text annotation | homologous J3_5TBW_006 NA | |
| J3_8BQX_020 | 1/BQ/1230:1232, 1/BQ/1256:1262, 1/BQ/1277:1279 | No text annotation | homologous J3_8C3A_005 NA | |
| J3_8BQX_021 | 1/BQ/1479:1485, 1/BQ/1857:1859, 1/BQ/1871:1874 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_8BQX_022 | 1/BQ/1488:1491, 1/BQ/1837:1843, 1/BQ/1852:1854 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_8BQX_023 | 1/BQ/1526:1531, 1/BQ/1591:1595, 1/BQ/1612:1613 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_8BQX_040 | 1/BQ/1537:1542, 1/BQ/1551:1560, 1/BQ/1579:1584 | No text annotation | ||
| J3_8BQX_024 | 1/BQ/1631:1632, 1/BQ/1641:1645, 1/BQ/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_8BQX_041 | 1/BQ/1654:1658, 1/BQ/1791:1792, 1/BQ/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_8BQX_025 | 1/BQ/2432:2435, 1/BQ/2512:2517, 1/BQ/2590:2597 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_8BQX_026 | 1/BQ/2529:2532, 1/BQ/2547:2563, 1/BQ/2578:2581 | No text annotation | homologous J3_8P9A_060 J3_28639.1 | |
| J3_8BQX_042 | 1/BQ/2651:2653, 1/BQ/2754:2765, 1/BQ/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_8BQX_027 | 1/BQ/2664:2666, 1/BQ/2690:2692, 1/BQ/2701:2706 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_8BQX_028 | 1/BQ/2886:2889, 1/BQ/2914:2916, 1/BQ/2930:2936 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_8BQX_043 | 1/BQ/3171:3176, 1/BQ/3212:3220, 1/BQ/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_8BQX_029 | 1/BQ/3298:3300, 1/BQ/3314:3318, 1/BQ/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_8BQX_030 | 1/BR/9:14, 1/BR/66:67, 1/BR/111:112 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_8BQX_031 | 1/BS/44:45, 1/BS/58:64, 1/BS/96:100 | No text annotation | homologous J3_8P9A_067 J3_35667.2 | |
| J4_8BQX_001 | 1/2/99:107, 1/2/307:309, 1/2/357:361, 1/2/383:384 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_8BQX_002 | 1/2/622:624, 1/2/975:980, 1/2/1021:1032, 1/2/1103:1104 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_8BQX_003 | 1/BQ/112:113, 1/BQ/267:272, 1/BQ/293:299, 1/BQ/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_8BQX_004 | 1/BQ/185:189, 1/BQ/205:208, 1/BQ/212:214, 1/BQ/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_8BQX_005 | 1/BQ/1451:1457, 1/BQ/1475:1476, 1/BQ/1877:1880, 1/BQ/2352:2353 | No text annotation | homologous J4_8C3A_003 NA | |
| J4_8BQX_006 | 1/BQ/1492:1496, 1/BQ/1520:1525, 1/BQ/1614:1615, 1/BQ/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_69051.6 | |
| J4_8BQX_007 | 1/BQ/1674:1675, 1/BQ/1693:1694, 1/BQ/1752:1753, 1/BQ/1772:1773 | No text annotation | homologous J4_8P9A_016 J4_24280.2 | |
| J4_8BQX_008 | 1/BQ/2130:2134, 1/BQ/2146:2150, 1/BQ/2186:2190, 1/BQ/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_8BQX_009 | 1/BQ/2192:2194, 1/BQ/2248:2249, 1/BQ/2267:2276, 1/BQ/2310:2315 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8BQX_010 | 1/BQ/2654:2658, 1/BQ/2712:2716, 1/BQ/2740:2742, 1/BQ/2751:2753 | No text annotation | homologous J4_8P9A_019 J4_04930.6 | |
| J4_8BQX_011 | 1/BQ/3010:3012, 1/BQ/3042:3043, 1/BQ/3098:3100, 1/BQ/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J5_8BQX_001 | 1/2/31:35, 1/2/473:479, 1/2/509:516, 1/2/536:546, 1/2/592:595 | No text annotation | ||
| J5_8BQX_002 | 1/2/54:57, 1/2/90:97, 1/2/386:388, 1/2/409:411, 1/2/422:426 | No text annotation | homologous J5_8P9A_017 J5_59910.6 | |
| J5_8BQX_012 | 1/2/124:143, 1/2/172:182, 1/2/203:204, 1/2/263:265, 1/2/289:293 | No text annotation | ||
| J5_8BQX_013 | 1/2/124:143, 1/2/172:182, 1/2/203:204, 1/2/263:267, 1/2/288:293 | No text annotation | ||
| J5_8BQX_005 | 1/2/636:642, 1/2/692:699, 1/2/739:744, 1/2/807:822, 1/2/850:860 | No text annotation | ||
| J5_8BQX_006 | 1/BQ/20:22, 1/BS/35:42, 1/BS/102:107, 1/BS/115:116, 1/BS/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_8BQX_007 | 1/BQ/658:663, 1/BQ/799:802, 1/BQ/941:944, 1/BQ/1375:1376, 1/BQ/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_8BQX_008 | 1/BQ/675:678, 1/BQ/702:706, 1/BQ/713:721, 1/BQ/749:751, 1/BQ/782:787 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_8BQX_009 | 1/BQ/1906:1914, 1/BQ/1938:1939, 1/BQ/2109:2110, 1/BQ/2114:2122, 1/BQ/2331:2333 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_8BQX_010 | 1/BQ/2399:2406, 1/BQ/2815:2823, 1/BQ/2867:2876, 1/BQ/2951:2957, 1/BQ/2975:2980 | No text annotation | ||
| J5_8BQX_011 | 1/BQ/2416:2419, 1/BQ/2611:2614, 1/BQ/2627:2628, 1/BQ/2650:2651, 1/BQ/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J6_8BQX_001 | 1/BQ/22:27, 1/BQ/58:68, 1/BQ/75:79, 1/BQ/106:110, 1/BQ/321:331, 1/BS/32:35 | No text annotation | ||
| J6_8BQX_002 | 1/BQ/2416:2419, 1/BQ/2611:2614, 1/BQ/2627:2628, 1/BQ/2650:2653, 1/BQ/2754:2765, 1/BQ/2793:2804 | No text annotation | ||
| J7_8BQX_001 | 1/BQ/949:954, 1/BQ/967:968, 1/BQ/1114:1117, 1/BQ/1141:1146, 1/BQ/1157:1161, 1/BQ/1338:1339, 1/BQ/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J5_8BQX_003 | No text annotation | ||
| J5_8BQX_004 | No text annotation |
Coloring options: