Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8EWC_0011/A1/38:45No text annotation
Not in a motif group
geometric
HL_4WF9_006
HL_06192.2
HL_8EWC_0021/A1/69:74No text annotation
Not in a motif group
homologous
HL_8C3A_002
HL_02862.2
HL_8EWC_0031/A1/90:96No text annotation
Not in a motif group
homologous
HL_8C3A_003
HL_67216.7
HL_8EWC_0041/A1/132:136No text annotation
Not in a motif group
homologous
HL_8C3A_004
HL_98426.1
HL_8EWC_0051/A1/194:201No text annotation
Not in a motif group
homologous
HL_8C3A_005
HL_89380.2
HL_8EWC_0061/A1/208:212No text annotation
Not in a motif group
homologous
HL_8C3A_006
HL_98984.2
HL_8EWC_0071/A1/216:224No text annotation
Not in a motif group
homologous
HL_8C3A_007
HL_08002.8
HL_8EWC_0081/A1/278:287No text annotation
Not in a motif group
homologous
HL_8C3A_008
HL_71554.2
HL_8EWC_0091/A1/303:312No text annotation
Not in a motif group
homologous
HL_8C3A_009
HL_12078.2
HL_8EWC_0101/A1/357:362No text annotation
Not in a motif group
homologous
HL_8C3A_010
HL_42097.1
HL_8EWC_0111/A1/382:387No text annotation
Not in a motif group
homologous
HL_8C3A_011
HL_42097.1
HL_8EWC_0121/A1/540:551No text annotation
Not in a motif group
HL_8EWC_0131/A1/599:604GNRA
Not in a motif group
geometric
HL_4Y1M_003
HL_42097.1
HL_8EWC_0141/A1/638:651No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98984.2
HL_8EWC_0151/A1/686:694No text annotation
Not in a motif group
homologous
HL_8C3A_015
HL_03345.1
HL_8EWC_0161/A1/707:712No text annotation
Not in a motif group
homologous
HL_8C3A_016
HL_42097.1
HL_8EWC_0171/A1/732:737GNRA
Not in a motif group
geometric
HL_5TBW_017
HL_42097.1
HL_8EWC_0181/A1/763:768No text annotation
Not in a motif group
homologous
HL_8C3A_018
HL_34168.2
HL_8EWC_0191/A1/844:849No text annotation
Not in a motif group
homologous
HL_8C3A_019
HL_42097.1
HL_8EWC_0201/A1/875:886No text annotation
Not in a motif group
HL_8EWC_0211/A1/910:918No text annotation
Not in a motif group
homologous
HL_8C3A_021
HL_33817.1
HL_8EWC_0221/A1/958:963No text annotation
Not in a motif group
homologous
HL_8C3A_022
HL_96598.1
HL_8EWC_0231/A1/1017:1035No text annotation
Not in a motif group
HL_8EWC_0241/A1/1076:1083No text annotation
Not in a motif group
HL_8EWC_0251/A1/1126:1132No text annotation
Not in a motif group
homologous
HL_8C3A_025
HL_42097.1
HL_8EWC_0261/A1/1148:1155No text annotation
Not in a motif group
homologous
HL_8C3A_026
HL_64430.2
HL_8EWC_0271/A1/1239:1249No text annotation
Not in a motif group
homologous
HL_8C3A_027
HL_07145.1
HL_8EWC_0281/A1/1267:1274No text annotation
Not in a motif group
homologous
HL_8C3A_028
HL_84085.2
HL_8EWC_0291/A1/1347:1357No text annotation
Not in a motif group
homologous
HL_8C3A_029
HL_60592.1
HL_8EWC_0301/A1/1403:1408No text annotation
Not in a motif group
homologous
HL_8C3A_030
HL_42097.1
HL_8EWC_0311/A1/1462:1470No text annotation
Not in a motif group
homologous
HL_8C3A_031
HL_89380.2
HL_8EWC_0321/A1/1506:1512No text annotation
Not in a motif group
homologous
HL_8C3A_032
HL_46680.1
HL_8EWC_0331/A1/1544:1549No text annotation
Not in a motif group
homologous
HL_8C3A_033
HL_76539.2
HL_8EWC_0341/A1/1566:1572No text annotation
Not in a motif group
geometric
HL_4V88_190
HL_91058.1
HL_8EWC_0351/A1/1599:1608No text annotation
Not in a motif group
homologous
HL_8C3A_035
HL_69023.2
HL_8EWC_0361/A1/1634:1639No text annotation
Not in a motif group
homologous
HL_8C3A_036
HL_42097.1
HL_8EWC_0371/A1/1680:1688No text annotation
Not in a motif group
homologous
HL_8C3A_037
HL_60812.1
HL_8EWC_0381/A1/1719:1725No text annotation
Not in a motif group
homologous
HL_8C3A_038
HL_86373.2
HL_8EWC_0391/A1/1759:1766No text annotation
Not in a motif group
HL_8EWC_0401/A1/1792:1796No text annotation
Not in a motif group
homologous
HL_8C3A_040
HL_49678.1
HL_8EWC_0411/A1/1844:1851No text annotation
Not in a motif group
homologous
HL_8C3A_041
HL_64430.2
HL_8EWC_0421/A1/1862:1868No text annotation
Not in a motif group
homologous
HL_8C3A_042
HL_42097.1
HL_8EWC_0431/A1/1923:1928No text annotation
Not in a motif group
homologous
HL_8C3A_043
HL_03562.2
HL_8EWC_0441/A1/1951:2095No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98984.2
HL_8EWC_0451/A1/2110:2114No text annotation
Not in a motif group
homologous
HL_8C3A_045
HL_20062.1
HL_8EWC_0461/A1/2135:2145No text annotation
Not in a motif group
homologous
HL_8C3A_046
HL_43613.5
HL_8EWC_0471/A1/2164:2170No text annotation
Not in a motif group
homologous
HL_8C3A_047
HL_42097.1
HL_8EWC_0481/A1/2219:2226No text annotation
Not in a motif group
geometric
HL_6CF2_001
HL_24068.2
HL_8EWC_0491/A1/2253:2263No text annotation
Not in a motif group
homologous
HL_8C3A_049
HL_71924.2
HL_8EWC_0501/A1/2292:2300No text annotation
Not in a motif group
homologous
HL_8C3A_050
HL_51824.1
HL_8EWC_0511/A1/2369:2378No text annotation
Not in a motif group
homologous
HL_8C3A_051
HL_90642.6
HL_8EWC_0521/A1/2469:2476No text annotation
Not in a motif group
HL_8EWC_0531/A1/2535:2544No text annotation
Not in a motif group
HL_8EWC_0541/A1/2568:2573No text annotation
Not in a motif group
geometric
HL_5FQ5_002
HL_38927.2
HL_8EWC_0551/A1/2616:2624No text annotation
Not in a motif group
homologous
HL_8C3A_055
HL_53171.2
HL_8EWC_0561/A1/2633:2645No text annotation
Not in a motif group
homologous
HL_8C3A_056
HL_19870.6
HL_8EWC_0571/A1/2673:2681No text annotation
Not in a motif group
homologous
HL_8C3A_057
HL_76406.4
HL_8EWC_0581/A1/2693:2700No text annotation
Not in a motif group
homologous
HL_8C3A_058
HL_12078.2
HL_8EWC_0591/A1/2723:2733No text annotation
Not in a motif group
HL_8EWC_0601/A1/2744:2749No text annotation
Not in a motif group
homologous
HL_8C3A_060
HL_42097.1
HL_8EWC_0611/A1/2776:2784No text annotation
Not in a motif group
homologous
HL_8C3A_061
HL_96598.1
HL_8EWC_0621/A1/2840:2848No text annotation
Not in a motif group
homologous
HL_8C3A_062
HL_06192.2
HL_8EWC_0631/A1/2897:2904No text annotation
Not in a motif group
homologous
HL_8C3A_063
HL_88526.2
HL_8EWC_0641/A1/2920:2926No text annotation
Not in a motif group
homologous
HL_8C3A_064
HL_43656.2
HL_8EWC_0651/A1/2963:2968No text annotation
Not in a motif group
homologous
HL_8C3A_065
HL_42097.1
HL_8EWC_0661/A1/3025:3030No text annotation
Not in a motif group
homologous
HL_8C3A_066
HL_42097.1
HL_8EWC_0671/A1/3068:3073No text annotation
Not in a motif group
homologous
HL_8C3A_067
HL_46680.1
HL_8EWC_0681/A1/3110:3124No text annotation
Not in a motif group
homologous
HL_8C3A_068
HL_56677.7
HL_8EWC_0691/A1/3194:3197No text annotation
Not in a motif group
geometric
HL_5TBW_068
HL_98426.1
HL_8EWC_0701/A1/3240:3247No text annotation
Not in a motif group
geometric
HL_5TBW_069
HL_14449.2
HL_8EWC_0711/A1/3303:3311No text annotation
Not in a motif group
geometric
HL_5TBW_070
HL_27930.1
HL_8EWC_0721/A1/3350:3353No text annotation
Not in a motif group
homologous
HL_8C3A_072
HL_53837.1
HL_8EWC_0731/A3/36:41No text annotation
Not in a motif group
geometric
HL_5TBW_185
HL_87939.1
HL_8EWC_0741/A3/88:93GNRA
Not in a motif group
homologous
HL_5TBW_186
HL_42097.1
HL_8EWC_0751/A4/69:89No text annotation
Not in a motif group
HL_8EWC_0761/A4/108:114No text annotation
Not in a motif group
homologous
HL_5TBW_075
HL_87939.1
HL_8EWC_0771/A4/124:129No text annotation
Not in a motif group
homologous
HL_5TBW_076
HL_96851.2
HL_8EWC_0781/B5/7:17No text annotation
Not in a motif group
homologous
HL_4V88_186
HL_89881.2
HL_8EWC_0791/B5/70:81No text annotation
Not in a motif group
HL_8EWC_0801/B5/154:160Other HL
Not in a motif group
homologous
HL_4V88_188
HL_76539.2
HL_8EWC_0811/B5/186:199No text annotation
Not in a motif group
HL_8EWC_0821/B5/230:235No text annotation
Not in a motif group
geometric
HL_7RQB_011
HL_75407.1
HL_8EWC_0831/B5/243:250T-loop with 1 bulged base
Not in a motif group
homologous
HL_4V88_191
HL_27930.1
HL_8EWC_0841/B5/276:279No text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_89098.1
HL_8EWC_0851/B5/330:338No text annotation
Not in a motif group
homologous
HL_4V88_193
HL_69023.2
HL_8EWC_0861/B5/368:373No text annotation
Not in a motif group
homologous
HL_4V88_194
HL_50142.2
HL_8EWC_0871/B5/393:404No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_84288.1
HL_8EWC_0881/B5/411:422No text annotation
Not in a motif group
HL_8EWC_0891/B5/450:456No text annotation
Not in a motif group
homologous
HL_4V88_197
HL_09136.1
HL_8EWC_0901/B5/490:497No text annotation
Not in a motif group
HL_8EWC_0911/B5/520:532No text annotation
Not in a motif group
geometric
HL_4V88_199
HL_06285.2
HL_8EWC_0921/B5/569:574Other HL
Not in a motif group
homologous
HL_4V88_200
HL_53845.1
HL_8EWC_0931/B5/649:685No text annotation
Not in a motif group
HL_8EWC_0941/B5/713:725No text annotation
Not in a motif group
HL_8EWC_0951/B5/764:772No text annotation
Not in a motif group
homologous
HL_4V88_203
HL_46766.2
HL_8EWC_0961/B5/777:783No text annotation
Not in a motif group
HL_8EWC_0971/B5/828:844No text annotation
Not in a motif group
homologous
HL_4V88_205
HL_96598.1
HL_8EWC_0981/B5/900:909No text annotation
Not in a motif group
homologous
HL_4V88_206
HL_12326.1
HL_8EWC_0991/B5/937:942Other HL
Not in a motif group
homologous
HL_4V88_207
HL_87030.2
HL_8EWC_1001/B5/996:1008No text annotation
Not in a motif group
HL_8EWC_1011/B5/1055:1064No text annotation
Not in a motif group
HL_8EWC_1021/B5/1084:1089Other HL
Not in a motif group
homologous
HL_4V88_210
HL_42097.1
HL_8EWC_1031/B5/1120:1127No text annotation
Not in a motif group
geometric
HL_7A0S_056
HL_84085.2
HL_8EWC_1041/B5/1188:1197No text annotation
Not in a motif group
HL_8EWC_1051/B5/1238:1247No text annotation
Not in a motif group
homologous
HL_4V88_213
HL_53597.2
HL_8EWC_1061/B5/1296:1301GNRA
Not in a motif group
homologous
HL_4V88_214
HL_42097.1
HL_8EWC_1071/B5/1309:1316No text annotation
Not in a motif group
homologous
HL_4V88_215
HL_71554.2
HL_8EWC_1081/B5/1359:1364No text annotation
Not in a motif group
HL_8EWC_1091/B5/1396:1402No text annotation
Not in a motif group
homologous
HL_4V88_217
HL_42097.1
HL_8EWC_1101/B5/1501:1506GNRA
Not in a motif group
homologous
HL_4V88_218
HL_42097.1
HL_8EWC_1111/B5/1550:1561No text annotation
Not in a motif group
homologous
HL_4V88_219
HL_22554.1
HL_8EWC_1121/B5/1594:1602No text annotation
Not in a motif group
homologous
HL_4V88_220
HL_60812.1
HL_8EWC_1131/B5/1698:1703No text annotation
Not in a motif group
HL_8EWC_1141/B5/1778:1783Other HL
Not in a motif group
homologous
HL_4V88_222
HL_16173.1
HL_8EWC_1151/EC/6787:6809No text annotation
Not in a motif group
HL_8EWC_1161/EC/6838:6845No text annotation
Not in a motif group
HL_8EWC_1171/EC/6861:6869No text annotation
Not in a motif group
HL_8EWC_1181/EC/6899:6915No text annotation
Not in a motif group
HL_8EWC_1191/EC/6924:6929No text annotation
Not in a motif group

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8EWC_0011/A1/5:7,
1/A4/152:154
No text annotation
Not in a motif group
geometric
IL_3ICQ_003
IL_51629.2
IL_8EWC_0021/A1/7:8,
1/A4/150:152
Single bulged C
Not in a motif group
geometric
IL_5TBW_002
IL_61258.12
IL_8EWC_0031/A1/13:15,
1/A4/144:145
Single bulged U
Not in a motif group
homologous
IL_5TBW_003
IL_83039.13
IL_8EWC_0041/A1/27:28,
1/A1/56:58
No text annotation
Not in a motif group
homologous
IL_8C3A_004
IL_76488.2
IL_8EWC_0051/A1/31:38,
1/A1/45:53
No text annotation
Not in a motif group
homologous
IL_8C3A_005
IL_35728.2
IL_8EWC_0061/A1/82:89,
1/A1/97:103
No text annotation
Not in a motif group
homologous
IL_8C3A_006
IL_88613.1
IL_8EWC_0071/A1/123:124,
1/A1/144:149
No text annotation
Not in a motif group
homologous
IL_8C3A_007
IL_19724.2
IL_8EWC_0081/A1/125:127,
1/A1/141:143
No text annotation
Not in a motif group
homologous
IL_8C3A_008
IL_95997.1
IL_8EWC_0091/A1/163:165,
1/A1/257:258
Single stack bend
Not in a motif group
geometric
IL_5TBW_009
IL_76488.2
IL_8EWC_0101/A1/168:170,
1/A1/247:254
No text annotation
Not in a motif group
IL_8EWC_0111/A1/170:172,
1/A1/245:247
Isolated cWH basepair
Not in a motif group
geometric
IL_4KQ0_003
IL_51629.2
IL_8EWC_0121/A1/172:174,
1/A1/243:245
AA cWW
Not in a motif group
geometric
IL_5ED1_002
IL_95997.1
IL_8EWC_0131/A1/174:178,
1/A1/238:243
No text annotation
Not in a motif group
IL_8EWC_0141/A1/189:191,
1/A1/204:205
No text annotation
Not in a motif group
homologous
IL_8C3A_013
IL_83039.13
IL_8EWC_0151/A1/337:339,
1/A4/25:26
Single bulged A
Not in a motif group
homologous
IL_5TBW_013
IL_37497.2
IL_8EWC_0161/A1/376:379,
1/A1/390:403
No text annotation
Not in a motif group
homologous
IL_8C3A_015
IL_60992.6
IL_8EWC_0171/A1/404:410,
1/A4/13:19
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5TBW_015
IL_66414.6
IL_8EWC_0181/A1/417:419,
1/A4/4:6
No text annotation
Not in a motif group
geometric
IL_3MEI_002
IL_95997.1
IL_8EWC_0191/A1/429:431,
1/A1/628:630
No text annotation
Not in a motif group
geometric
IL_5TBW_016
IL_51629.2
IL_8EWC_0201/A1/435:495,
1/A1/618:624
No text annotation
Not in a motif group
homologous
IL_5TBW_017
IL_33557.1
IL_8EWC_0211/A1/512:513,
1/A1/577:579
No text annotation
Not in a motif group
homologous
IL_8C3A_020
IL_37497.2
IL_8EWC_0221/A1/517:525,
1/A1/567:573
No text annotation
Not in a motif group
IL_8EWC_0231/A1/531:540,
1/A1/551:561
No text annotation
Not in a motif group
IL_8EWC_0241/A1/668:670,
1/A1/792:794
No text annotation
Not in a motif group
homologous
IL_8C3A_023
IL_95997.1
IL_8EWC_0251/A1/680:684,
1/A1/696:700
No text annotation
Not in a motif group
homologous
IL_8C3A_024
IL_74284.1
IL_8EWC_0261/A1/725:728,
1/A1/741:745
No text annotation
Not in a motif group
homologous
IL_8C3A_025
IL_07235.1
IL_8EWC_0271/A1/752:753,
1/A1/779:781
No text annotation
Not in a motif group
homologous
IL_8C3A_026
IL_37497.2
IL_8EWC_0281/A1/755:756,
1/A1/775:777
No text annotation
Not in a motif group
homologous
IL_8C3A_027
IL_83039.13
IL_8EWC_0291/A1/758:763,
1/A1/768:773
No text annotation
Not in a motif group
geometric
IL_5TBW_026
IL_19954.2
IL_8EWC_0301/A1/803:809,
1/A1/931:940
No text annotation
Not in a motif group
IL_8EWC_0311/A1/826:828,
1/A1/897:899
No text annotation
Not in a motif group
geometric
IL_5TBW_110
IL_51629.2
IL_8EWC_0321/A1/828:829,
1/A1/895:897
Single bulged A
Not in a motif group
geometric
IL_4V9F_025
IL_37497.2
IL_8EWC_0331/A1/833:834,
1/A1/859:861
No text annotation
Not in a motif group
homologous
IL_8C3A_032
IL_00225.2
IL_8EWC_0341/A1/834:838,
1/A1/855:859
Triple sheared
Not in a motif group
geometric
IL_7RQB_021
IL_56467.8
IL_8EWC_0351/A1/869:872,
1/A1/888:890
No text annotation
Not in a motif group
homologous
IL_8C3A_034
IL_05564.2
IL_8EWC_0361/A1/873:875,
1/A1/886:887
Single bulged U
Not in a motif group
geometric
IL_5TBW_032
IL_83039.13
IL_8EWC_0371/A1/907:909,
1/A1/919:923
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_033
IL_90991.6
IL_8EWC_0381/A1/969:970,
1/A1/1111:1113
No text annotation
Not in a motif group
homologous
IL_8C3A_038
IL_76488.2
IL_8EWC_0391/A1/977:982,
1/A1/1101:1104
No text annotation
Not in a motif group
homologous
IL_8C3A_039
IL_59027.1
IL_8EWC_0401/A1/983:985,
1/A1/1099:1100
No text annotation
Not in a motif group
homologous
IL_8C3A_040
IL_00225.2
IL_8EWC_0411/A1/991:997,
1/A1/1052:1058
No text annotation
Not in a motif group
homologous
IL_8C3A_041
IL_93830.3
IL_8EWC_0421/A1/997:998,
1/A1/1050:1052
Minor groove platform
Not in a motif group
geometric
IL_5TBW_039
IL_42622.2
IL_8EWC_0431/A1/999:1004,
1/A1/1046:1049
No text annotation
Not in a motif group
homologous
IL_8C3A_043
IL_02509.1
IL_8EWC_0441/A1/1006:1009,
1/A1/1041:1044
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5TBW_041
IL_30621.2
IL_8EWC_0451/A1/1009:1011,
1/A1/1039:1041
No text annotation
Not in a motif group
geometric
IL_5TBW_042
IL_95997.1
IL_8EWC_0461/A1/1013:1017,
1/A1/1035:1037
No text annotation
Not in a motif group
geometric
IL_4V9F_072
IL_63450.2
IL_8EWC_0471/A1/1069:1071,
1/A1/1087:1089
No text annotation
Not in a motif group
homologous
IL_8C3A_047
IL_95997.1
IL_8EWC_0481/A1/1074:1076,
1/A1/1083:1084
Single bulged A
Not in a motif group
geometric
IL_5TBW_045
IL_37497.2
IL_8EWC_0491/A1/1120:1122,
1/A1/1136:1138
No text annotation
Not in a motif group
homologous
IL_8C3A_049
IL_95997.1
IL_8EWC_0501/A1/1123:1126,
1/A1/1132:1135
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1MFQ_004
IL_30621.2
IL_8EWC_0511/A1/1167:1171,
1/A1/1328:1332
No text annotation
Not in a motif group
homologous
IL_8C3A_051
IL_89002.2
IL_8EWC_0521/A1/1173:1180,
1/A1/1325:1326
No text annotation
Not in a motif group
homologous
IL_8C3A_052
IL_15861.7
IL_8EWC_0531/A1/1180:1182,
1/A1/1324:1325
Single bulged U
Not in a motif group
geometric
IL_5TBW_050
IL_83039.13
IL_8EWC_0541/A1/1187:1194,
1/A1/1314:1319
No text annotation
Not in a motif group
geometric
IL_5TBW_051
IL_27086.1
IL_8EWC_0551/A1/1194:1205,
1/A1/1299:1314
No text annotation
Not in a motif group
geometric
IL_5TBW_052
IL_53762.1
IL_8EWC_0561/A1/1207:1209,
1/A1/1296:1297
No text annotation
Not in a motif group
homologous
IL_8C3A_056
IL_83039.13
IL_8EWC_0571/A1/1218:1226,
1/A1/1283:1287
Kink-turn
Not in a motif group
geometric
IL_4V9F_042
IL_90538.4
IL_8EWC_0591/A1/1234:1238,
1/A1/1250:1254
No text annotation
Not in a motif group
homologous
IL_8C3A_058
IL_30542.3
IL_8EWC_0601/A1/1262:1266,
1/A1/1275:1277
No text annotation
Not in a motif group
homologous
IL_8C3A_059
IL_05564.2
IL_8EWC_0611/A1/1376:1378,
1/A1/1428:1431
No text annotation
Not in a motif group
homologous
IL_8C3A_061
IL_52767.2
IL_8EWC_0621/A1/1385:1387,
1/A1/1420:1421
No text annotation
Not in a motif group
homologous
IL_8C3A_062
IL_37497.2
IL_8EWC_0631/A1/1388:1395,
1/A1/1415:1419
No text annotation
Not in a motif group
homologous
IL_8C3A_063
IL_70923.2
IL_8EWC_0641/A1/1398:1400,
1/A1/1411:1412
Single bulged A
Not in a motif group
geometric
IL_5TBW_060
IL_37497.2
IL_8EWC_0651/A1/1444:1451,
1/A1/2353:2359
8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
Not in a motif group
geometric
IL_4V9F_012
IL_59724.1
IL_8EWC_0661/A1/1500:1505,
1/A1/1513:1516
No text annotation
Not in a motif group
homologous
IL_8C3A_066
IL_93630.2
IL_8EWC_0671/A1/1532:1536,
1/A1/1585:1590
No text annotation
Not in a motif group
homologous
IL_8C3A_067
IL_89002.2
IL_8EWC_0681/A1/1561:1563,
1/A1/1577:1578
Single stack bend
Not in a motif group
geometric
IL_7A0S_054
IL_76488.2
IL_8EWC_0691/A1/1563:1566,
1/A1/1572:1577
No text annotation
Not in a motif group
IL_8EWC_0701/A1/1618:1621,
1/A1/1824:1826
No text annotation
Not in a motif group
homologous
IL_8C3A_070
IL_84698.1
IL_8EWC_0711/A1/1623:1624,
1/A1/1820:1822
Single bulged U
Not in a motif group
geometric
IL_2R8S_004
IL_83039.13
IL_8EWC_0721/A1/1625:1631,
1/A1/1811:1819
No text annotation
Not in a motif group
IL_8EWC_0731/A1/1645:1649,
1/A1/1806:1810
No text annotation
Not in a motif group
homologous
IL_8C3A_073
IL_56467.8
IL_8EWC_0741/A1/1661:1663,
1/A1/1786:1788
No text annotation
Not in a motif group
homologous
IL_8C3A_074
IL_95997.1
IL_8EWC_0751/A1/1669:1670,
1/A1/1778:1780
No text annotation
Not in a motif group
homologous
IL_8C3A_075
IL_61258.12
IL_8EWC_0761/A1/1670:1671,
1/A1/1776:1778
Single stack bend
Not in a motif group
geometric
IL_5TBW_070
IL_76488.2
IL_8EWC_0771/A1/1702:1707,
1/A1/1737:1743
No text annotation
Not in a motif group
homologous
IL_8C3A_078
IL_39753.1
IL_8EWC_0781/A1/1711:1717,
1/A1/1727:1733
No text annotation
Not in a motif group
homologous
IL_8C3A_079
IL_60192.2
IL_8EWC_0791/A1/1883:1889,
1/A1/2346:2349
No text annotation
Not in a motif group
homologous
IL_8C3A_080
IL_49460.2
IL_8EWC_0801/A1/1895:1897,
1/A1/2338:2340
No text annotation
Not in a motif group
homologous
IL_8C3A_081
IL_54997.7
IL_8EWC_0811/A1/1897:1901,
1/A1/2336:2338
Major groove platform with extra pair
Not in a motif group
geometric
IL_7RQB_093
IL_63450.2
IL_8EWC_0821/A1/1901:1906,
1/A1/2333:2336
Intercalated tWH
Not in a motif group
geometric
IL_4V9F_062
IL_82842.2
IL_8EWC_0831/A1/1918:1923,
1/A1/1928:1934
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_4V9F_063
IL_65969.2
IL_8EWC_0841/A1/1940:1942,
1/A1/2106:2108
No text annotation
Not in a motif group
homologous
IL_8C3A_085
IL_95997.1
IL_8EWC_0851/A1/1947:1948,
1/A1/2098:2101
No text annotation
Not in a motif group
homologous
IL_8C3A_086
IL_74125.1
IL_8EWC_0861/A1/1949:1951,
1/A1/2095:2097
No text annotation
Not in a motif group
geometric
IL_1RPU_001
IL_95997.1
IL_8EWC_0871/A1/2128:2129,
1/A1/2323:2325
No text annotation
Not in a motif group
homologous
IL_8C3A_087
IL_37497.2
IL_8EWC_0881/A1/2156:2161,
1/A1/2173:2180
No text annotation
Not in a motif group
homologous
IL_8C3A_088
IL_64509.1
IL_8EWC_0891/A1/2196:2199,
1/A1/2245:2246
No text annotation
Not in a motif group
homologous
IL_8C3A_089
IL_88739.1
IL_8EWC_0901/A1/2200:2201,
1/A1/2241:2244
No text annotation
Not in a motif group
homologous
IL_8C3A_090
IL_16396.2
IL_8EWC_0911/A1/2204:2210,
1/A1/2235:2238
No text annotation
Not in a motif group
IL_8EWC_0921/A1/2211:2217,
1/A1/2228:2234
No text annotation
Not in a motif group
homologous
IL_8C3A_093
IL_36973.6
IL_8EWC_0931/A1/2276:2277,
1/A1/2307:2310
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_089
IL_59677.2
IL_8EWC_0941/A1/2277:2289,
1/A1/2303:2307
No text annotation
Not in a motif group
IL_8EWC_0951/A1/2391:2394,
1/A1/2986:2988
No text annotation
Not in a motif group
homologous
IL_8C3A_096
IL_63450.2
IL_8EWC_0961/A1/2396:2398,
1/A1/2981:2984
No text annotation
Not in a motif group
homologous
IL_8C3A_097
IL_54678.5
IL_8EWC_0971/A1/2409:2411,
1/A1/2811:2812
No text annotation
Not in a motif group
homologous
IL_8C3A_098
IL_83039.13
IL_8EWC_0981/A1/2412:2413,
1/A1/2807:2810
No text annotation
Not in a motif group
homologous
IL_8C3A_099
IL_42622.2
IL_8EWC_0991/A1/2420:2422,
1/A1/2608:2610
No text annotation
Not in a motif group
geometric
IL_4WF9_042
IL_95997.1
IL_8EWC_1001/A1/2423:2425,
1/A1/2604:2607
No text annotation
Not in a motif group
homologous
IL_8C3A_100
IL_38958.7
IL_8EWC_1011/A1/2441:2443,
1/A1/2504:2506
No text annotation
Not in a motif group
geometric
IL_4ZC7_002
IL_82068.2
IL_8EWC_1021/A1/2444:2450,
1/A1/2497:2503
No text annotation
Not in a motif group
IL_8EWC_1031/A1/2450:2452,
1/A1/2495:2497
No text annotation
Not in a motif group
IL_8EWC_1041/A1/2452:2463,
1/A1/2492:2495
No text annotation
Not in a motif group
IL_8EWC_1061/A1/2466:2469,
1/A1/2476:2489
No text annotation
Not in a motif group
IL_8EWC_1071/A1/2520:2526,
1/A1/2584:2587
No text annotation
Not in a motif group
homologous
IL_8C3A_106
IL_74114.1
IL_8EWC_1081/A1/2614:2615,
1/A1/2625:2627
No text annotation
Not in a motif group
homologous
IL_8C3A_107
IL_69996.1
IL_8EWC_1091/A1/2666:2668,
1/A1/2686:2690
No text annotation
Not in a motif group
homologous
IL_8C3A_108
IL_38958.7
IL_8EWC_1101/A1/2718:2721,
1/A1/2735:2738
No text annotation
Not in a motif group
homologous
IL_8C3A_109
IL_30621.2
IL_8EWC_1111/A1/2766:2768,
1/A1/2790:2792
UU cWW
Not in a motif group
geometric
IL_3SZX_003
IL_95997.1
IL_8EWC_1121/A1/2770:2773,
1/A1/2787:2788
No text annotation
Not in a motif group
homologous
IL_8C3A_110
IL_76488.2
IL_8EWC_1131/A1/2823:2824,
1/A1/2865:2867
Major groove platform
Not in a motif group
geometric
IL_5TBW_102
IL_27635.1
IL_8EWC_1141/A1/2824:2826,
1/A1/2863:2865
No text annotation
Not in a motif group
geometric
IL_5TBW_103
IL_95997.1
IL_8EWC_1151/A1/2826:2828,
1/A1/2862:2863
Major groove platform
Not in a motif group
geometric
IL_4V9F_083
IL_76223.2
IL_8EWC_1161/A1/2828:2830,
1/A1/2858:2862
No text annotation
Not in a motif group
homologous
IL_8C3A_113
IL_92788.2
IL_8EWC_1171/A1/2835:2839,
1/A1/2849:2853
No text annotation
Not in a motif group
homologous
IL_8C3A_114
NA
IL_8EWC_1181/A1/2876:2877,
1/A1/2949:2951
No text annotation
Not in a motif group
homologous
IL_8C3A_115
IL_76223.2
IL_8EWC_1191/A1/2877:2879,
1/A1/2947:2949
UG cWW
Not in a motif group
geometric
IL_4LFB_061
IL_95997.1
IL_8EWC_1201/A1/2879:2881,
1/A1/2943:2947
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5TBW_108
IL_90933.2
IL_8EWC_1211/A1/2881:2882,
1/A1/2940:2943
No text annotation
Not in a motif group
homologous
IL_8C3A_117
IL_71530.2
IL_8EWC_1221/A1/2889:2891,
1/A1/2912:2914
No text annotation
Not in a motif group
geometric
IL_5TBW_110
IL_51629.2
IL_8EWC_1231/A1/2891:2892,
1/A1/2909:2912
No text annotation
Not in a motif group
homologous
IL_8C3A_119
IL_95601.3
IL_8EWC_1241/A1/2918:2920,
1/A1/2926:2928
No text annotation
Not in a motif group
geometric
IL_5TBW_112
IL_95997.1
IL_8EWC_1251/A1/2957:2960,
1/A1/2972:2975
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1MFQ_004
IL_30621.2
IL_8EWC_1261/A1/2960:2961,
1/A1/2970:2972
No text annotation
Not in a motif group
homologous
IL_8C3A_122
IL_37497.2
IL_8EWC_1271/A1/3004:3007,
1/A1/3139:3144
No text annotation
Not in a motif group
homologous
IL_8C3A_123
IL_09705.9
IL_8EWC_1281/A1/3012:3014,
1/A1/3040:3042
No text annotation
Not in a motif group
homologous
IL_8C3A_124
IL_95997.1
IL_8EWC_1301/A1/3018:3025,
1/A1/3030:3036
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5TBW_116
IL_04346.7
IL_8EWC_1311/A1/3047:3051,
1/A1/3091:3094
No text annotation
Not in a motif group
homologous
IL_8C3A_126
IL_37712.2
IL_8EWC_1321/A1/3054:3059,
1/A1/3084:3088
No text annotation
Not in a motif group
homologous
IL_8C3A_127
IL_17136.1
IL_8EWC_1331/A1/3063:3064,
1/A1/3077:3080
No text annotation
Not in a motif group
homologous
IL_8C3A_128
IL_71530.2
IL_8EWC_1341/A1/3103:3107,
1/A1/3127:3131
No text annotation
Not in a motif group
homologous
IL_8C3A_129
IL_89002.2
IL_8EWC_1351/A1/3164:3166,
1/A1/3284:3286
No text annotation
Not in a motif group
homologous
IL_8C3A_130
IL_95997.1
IL_8EWC_1361/A1/3168:3170,
1/A1/3280:3282
No text annotation
Not in a motif group
geometric
IL_4P3T_006
IL_95997.1
IL_8EWC_1371/A1/3177:3179,
1/A1/3210:3211
Single bulged A
Not in a motif group
geometric
IL_5TBW_123
IL_37497.2
IL_8EWC_1381/A1/3179:3188,
1/A1/3204:3210
No text annotation
Not in a motif group
geometric
IL_5TBW_124
IL_15174.1
IL_8EWC_1391/A1/3193:3194,
1/A1/3197:3199
Single bulged U
Not in a motif group
geometric
IL_5TBW_125
IL_83039.13
IL_8EWC_1401/A1/3225:3229,
1/A1/3258:3260
No text annotation
Not in a motif group
homologous
IL_8C3A_133
IL_19389.6
IL_8EWC_1411/A1/3233:3235,
1/A1/3252:3254
No text annotation
Not in a motif group
geometric
IL_3D0U_006
IL_95997.1
IL_8EWC_1421/A1/3235:3238,
1/A1/3249:3252
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_6MWN_005
IL_30621.2
IL_8EWC_1431/A1/3300:3303,
1/A1/3311:3314
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5TBW_129
IL_30621.2
IL_8EWC_1441/A1/3318:3320,
1/A1/3387:3388
Single bulged U
Not in a motif group
geometric
IL_4WF9_038
IL_83039.13
IL_8EWC_1451/A1/3324:3325,
1/A1/3381:3383
No text annotation
Not in a motif group
homologous
IL_8C3A_137
IL_83039.13
IL_8EWC_1461/A1/3328:3330,
1/A1/3373:3378
No text annotation
Not in a motif group
homologous
IL_8C3A_138
IL_90933.2
IL_8EWC_1471/A1/3332:3337,
1/A1/3367:3371
No text annotation
Not in a motif group
homologous
IL_8C3A_139
IL_83162.5
IL_8EWC_1481/A1/3340:3342,
1/A1/3363:3364
Single bulged U
Not in a motif group
geometric
IL_3WBM_001
IL_83039.13
IL_8EWC_1491/A1/3342:3345,
1/A1/3360:3363
No text annotation
Not in a motif group
homologous
IL_8C3A_141
IL_09705.9
IL_8EWC_1501/A1/3349:3350,
1/A1/3353:3356
Multiple bulged bases
Not in a motif group
geometric
IL_3IGI_013
IL_71530.2
IL_8EWC_1511/A3/15:16,
1/A3/63:65
Single bulged A
Not in a motif group
homologous
IL_5TBW_372
IL_37497.2
IL_8EWC_1521/A3/21:27,
1/A3/53:58
No text annotation
Not in a motif group
homologous
IL_5TBW_373
IL_10207.2
IL_8EWC_1531/A3/28:29,
1/A3/49:52
Minor groove platform
Not in a motif group
geometric
IL_5TBW_374
IL_63797.2
IL_8EWC_1541/A3/29:30,
1/A3/47:49
Single stack bend
Not in a motif group
homologous
IL_5TBW_375
IL_76488.2
IL_8EWC_1551/A3/32:36,
1/A3/41:45
Symmetric double minor groove platform
Not in a motif group
homologous
IL_5TBW_376
IL_58103.6
IL_8EWC_1561/A3/72:80,
1/A3/100:106
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_377
IL_04346.7
IL_8EWC_1571/A3/84:87,
1/A3/94:96
No text annotation
Not in a motif group
homologous
IL_5TBW_378
IL_95997.1
IL_8EWC_1581/A4/44:64,
1/A4/96:100
No text annotation
Not in a motif group
geometric
IL_5TBW_144
IL_44998.1
IL_8EWC_1591/A4/64:66,
1/A4/93:96
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5TBW_145
IL_82068.2
IL_8EWC_1601/A4/68:69,
1/A4/89:91
Single bulged U
Not in a motif group
geometric
IL_5TBW_146
IL_83039.13
IL_8EWC_1611/B5/24:26,
1/B5/600:601
Single bulged C
Not in a motif group
homologous
IL_4V88_384
IL_61258.12
IL_8EWC_1621/B5/27:29,
1/B5/597:599
No text annotation
Not in a motif group
geometric
IL_6OL3_002
IL_95997.1
IL_8EWC_1631/B5/35:37,
1/B5/471:473
UC cWW
Not in a motif group
homologous
IL_4V88_385
IL_51629.2
IL_8EWC_1641/B5/37:41,
1/B5/466:471
No text annotation
Not in a motif group
geometric
IL_4V88_386
IL_41507.1
IL_8EWC_1651/B5/42:48,
1/B5/431:433
No text annotation
Not in a motif group
homologous
IL_4V88_387
IL_33912.1
IL_8EWC_1661/B5/50:52,
1/B5/428:429
Minor groove platform
Not in a motif group
homologous
IL_4V88_388
IL_93353.1
IL_8EWC_1671/B5/58:63,
1/B5/87:89
No text annotation
Not in a motif group
homologous
IL_4V88_389
IL_95004.1
IL_8EWC_1681/B5/64:69,
1/B5/82:86
No text annotation
Not in a motif group
homologous
IL_4V88_390
IL_77691.1
IL_8EWC_1691/B5/109:112,
1/B5/302:305
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_391
IL_30621.2
IL_8EWC_1701/B5/113:116,
1/B5/300:301
Multiple bulged bases
Not in a motif group
homologous
IL_4V88_392
IL_44546.1
IL_8EWC_1711/B5/117:122,
1/B5/295:299
No text annotation
Not in a motif group
homologous
IL_4V88_393
IL_64181.2
IL_8EWC_1721/B5/143:149,
1/B5/165:172
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4V88_394
IL_80604.2
IL_8EWC_1731/B5/150:152,
1/B5/162:164
Isolated cWH basepair
Not in a motif group
geometric
IL_4KQ0_004
IL_51629.2
IL_8EWC_1741/B5/204:206,
1/B5/259:263
Major groove platform with extra cWW
Not in a motif group
homologous
IL_4V88_397
IL_05564.2
IL_8EWC_1751/B5/206:208,
1/B5/257:259
No text annotation
Not in a motif group
geometric
IL_2O3V_004
IL_95997.1
IL_8EWC_1771/B5/265:267,
1/B5/288:289
Single bulged A
Not in a motif group
homologous
IL_4V88_399
IL_37497.2
IL_8EWC_1781/B5/270:273,
1/B5/283:285
No text annotation
Not in a motif group
homologous
IL_4V88_400
IL_47298.1
IL_8EWC_1791/B5/275:276,
1/B5/279:281
Single bulged U
Not in a motif group
homologous
IL_4V88_401
IL_83039.13
IL_8EWC_1801/B5/311:316,
1/B5/348:355
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4V88_402
IL_45067.2
IL_8EWC_1811/B5/318:323,
1/B5/345:346
No text annotation
Not in a motif group
homologous
IL_4V88_403
IL_48100.2
IL_8EWC_1821/B5/363:365,
1/B5/376:381
No text annotation
Not in a motif group
homologous
IL_4V88_404
IL_11347.1
IL_8EWC_1831/B5/389:391,
1/B5/406:408
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_405
IL_51629.2
IL_8EWC_1841/B5/439:441,
1/B5/463:464
Single bulged U
Not in a motif group
homologous
IL_4V88_407
IL_83039.13
IL_8EWC_1851/B5/443:447,
1/B5/460:461
C-loop
Not in a motif group
geometric
IL_5J7L_018