5OT7 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/1/30:32,1/1/552:553 | NA | NA |
2 | ➜ | 1/1/44:46,1/1/395:398 | NA | NA |
3 | ➜ | 1/1/47:52,1/1/359:361 | NA | NA |
4 | ➜ | 1/1/54:56,1/1/356:357 | NA | NA |
5 | ➜ | 1/1/63:66,1/1/103:104 | NA | NA |
6 | ➜ | 1/1/67:69,1/1/100:102 | NA | NA |
7 | ➜ | 1/1/73:76,1/1/78:96 | NA | NA |
8 | ➜ | 1/1/128:131,1/1/231:233 | NA | NA |
9 | ➜ | 1/1/132:136,1/1/227:230 | NA | NA |
10 | ➜ | 1/1/148:152,1/1/170:174 | NA | NA |
11 | ➜ | 1/1/152:154,1/1/167:170 | NA | NA |
12 | ➜ | 1/1/242:247,1/1/277:284 | NA | NA |
13 | ➜ | 1/1/249:254,1/1/272:275 | NA | NA |
14 | ➜ | 1/1/292:293,1/1/304:308 | NA | NA |
15 | ➜ | 1/1/367:369,1/1/392:393 | NA | NA |
16 | ➜ | 1/1/371:375,1/1/389:390 | NA | NA |
17 | ➜ | 1/1/375:376,1/1/387:389 | NA | NA |
18 | ➜ | 1/1/409:417,1/1/426:433 | NA | NA |
19 | ➜ | 1/1/446:450,1/1/483:488 | NA | NA |
20 | ➜ | 1/1/450:455,1/1/476:483 | NA | NA |
21 | ➜ | 1/1/504:511,1/1/540:541 | NA | NA |
22 | ➜ | 1/1/515:521,1/1/528:536 | NA | NA |
23 | ➜ | 1/1/580:584,1/1/757:761 | NA | NA |
24 | ➜ | 1/1/594:596,1/1/644:645 | NA | NA |
25 | ➜ | 1/1/597:598,1/1/640:643 | NA | NA |
26 | ➜ | 1/1/605:612,1/1/628:633 | NA | NA |
27 | ➜ | 1/1/654:655,1/1/751:754 | NA | NA |
28 | ➜ | 1/1/657:658,1/1/747:749 | NA | NA |
29 | ➜ | 1/1/661:666,1/1/740:744 | NA | NA |
30 | ➜ | 1/1/673:680,1/1/710:717 | NA | NA |
31 | ➜ | 1/1/765:773,1/1/806:812 | NA | NA |
32 | ➜ | 1/1/774:778,1/1/804:805 | NA | NA |
33 | ➜ | 1/1/779:783,1/1/799:803 | NA | NA |
34 | ➜ | 1/1/887:894,1/1/905:910 | NA | NA |
35 | ➜ | 1/1/922:923,1/1/1393:1395 | NA | NA |
36 | ➜ | 1/1/925:927,1/1/1390:1391 | NA | NA |
37 | ➜ | 1/1/933:936,1/1/1379:1384 | NA | NA |
38 | ➜ | 1/1/948:954,1/1/1226:1233 | NA | NA |
39 | ➜ | 1/1/985:988,1/1/1218:1220 | NA | NA |
40 | ➜ | 1/1/1048:1050,1/1/1208:1209 | NA | NA |
41 | ➜ | 1/1/1052:1056,1/1/1204:1206 | NA | NA |
42 | ➜ | 1/1/1057:1058,1/1/1199:1203 | NA | NA |
43 | ➜ | 1/1/1060:1061,1/1/1195:1197 | NA | NA |
44 | ➜ | 1/1/1061:1063,1/1/1193:1195 | NA | NA |
45 | ➜ | 1/1/1259:1264,1/1/1272:1276 | NA | NA |
46 | ➜ | 1/1/1264:1265,1/1/1270:1272 | NA | NA |
47 | ➜ | 1/1/1303:1310,1/1/1328:1334 | NA | NA |
48 | ➜ | 1/1/1350:1352,1/1/1371:1372 | NA | NA |
49 | ➜ | 1/1/1352:1354,1/1/1368:1371 | NA | NA |
50 | ➜ | 1/1/1399:1401,1/1/1501:1504 | NA | NA |
51 | ➜ | 1/1/1401:1404,1/1/1497:1501 | NA | NA |
52 | ➜ | 1/1/1405:1407,1/1/1494:1496 | NA | NA |
53 | ➜ | 1/1/1407:1409,1/1/1491:1494 | NA | NA |
54 | ➜ | 1/1/1412:1414,1/1/1486:1488 | NA | NA |
55 | ➜ | 1/1/1416:1419,1/1/1481:1484 | NA | NA |
56 | ➜ | 1/1/1431:1435,1/1/1466:1469 | NA | NA |
57 | ➜ | 1/1/1435:1437,1/1/1464:1466 | NA | NA |
58 | ➜ | 1/1/1440:1443,1/1/1459:1461 | NA | NA |
59 | ➜ | 1/2/1:3,1/2/71:72 | NA | NA |
60 | ➜ | 1/2/3:4,1/2/69:71 | NA | NA |
61 | ➜ | 1/4/24:30,1/4/510:516 | NA | NA |
62 | ➜ | 1/4/36:37,1/4/442:444 | NA | NA |
63 | ➜ | 1/4/42:43,1/4/434:436 | NA | NA |
64 | ➜ | 1/4/81:85,1/4/97:105 | NA | NA |
65 | ➜ | 1/4/183:185,1/4/211:214 | NA | NA |
66 | ➜ | 1/4/188:194,1/4/201:208 | NA | NA |
67 | ➜ | 1/4/239:245,1/4/253:258 | NA | NA |
68 | ➜ | 1/4/272C:272E,1/4/363E:365 | NA | NA |
69 | ➜ | 1/4/272J:279,1/4/361:363 | NA | NA |
70 | ➜ | 1/4/280:284,1/4/357:360 | NA | NA |
71 | ➜ | 1/4/288:290,1/4/350:353 | NA | NA |
72 | ➜ | 1/4/293:295,1/4/343:347 | NA | NA |
73 | ➜ | 1/4/481:484,1/4/496:509 | NA | NA |
74 | ➜ | 1/4/564:566,1/4/575:577 | NA | NA |
75 | ➜ | 1/4/606:610,1/4/618:622 | NA | NA |
76 | ➜ | 1/4/672:674,1/4/806:808 | NA | NA |
77 | ➜ | 1/4/674:678,1/4/799:806 | NA | NA |
78 | ➜ | 1/4/697:698,1/4/763:765 | NA | NA |
79 | ➜ | 1/4/702:707,1/4/724:730 | NA | NA |
80 | ➜ | 1/4/737:738,1/4/758:760 | NA | NA |
81 | ➜ | 1/4/738:741,1/4/756:758 | NA | NA |
82 | ➜ | 1/4/775:777,1/4/787:791 | NA | NA |
83 | ➜ | 1/4/837:838,1/4/940:942 | NA | NA |
84 | ➜ | 1/4/844:846,1/4/931:934 | NA | NA |
85 | ➜ | 1/4/846:850,1/4/927:931 | NA | NA |
86 | ➜ | 1/4/857:862,1/4/915:920 | NA | NA |
87 | ➜ | 1/4/862:863,1/4/913:915 | NA | NA |
88 | ➜ | 1/4/864:868,1/4/909:912 | NA | NA |
89 | ➜ | 1/4/875:879,1/4/898:902 | NA | NA |
90 | ➜ | 1/4/952:954,1/4/963:965 | NA | NA |
91 | ➜ | 1/4/994:996,1/4/1159:1160 | NA | NA |
92 | ➜ | 1/4/998:1002,1/4/1153:1157 | NA | NA |
93 | ➜ | 1/4/1004:1011,1/4/1150:1151 | NA | NA |
94 | ➜ | 1/4/1011:1013,1/4/1149:1150 | NA | NA |
95 | ➜ | 1/4/1018:1024,1/4/1140:1144 | NA | NA |
96 | ➜ | 1/4/1024:1030,1/4/1124:1140 | NA | NA |
97 | ➜ | 1/4/1031:1034,1/4/1121:1123 | NA | NA |
98 | ➜ | 1/4/1040:1042,1/4/1113:1115 | NA | NA |
99 | ➜ | 1/4/1043:1051,1/4/1109:1112 | NA | NA |
100 | ➜ | 1/4/1051:1052,1/4/1107:1109 | NA | NA |
101 | ➜ | 1/4/1058:1062,1/4/1076:1080 | NA | NA |
102 | ➜ | 1/4/1196:1198,1/4/1247:1250 | NA | NA |
103 | ➜ | 1/4/1202:1206,1/4/1240:1243 | NA | NA |
104 | ➜ | 1/4/1208:1215,1/4/1234:1238 | NA | NA |
105 | ➜ | 1/4/1219:1221,1/4/1229:1230 | NA | NA |
106 | ➜ | 1/4/1262:1269,1/4/2011:2017 | NA | NA |
107 | ➜ | 1/4/1319:1323,1/4/1331:1333 | NA | NA |
108 | ➜ | 1/4/1351:1355,1/4/1376:1380 | NA | NA |
109 | ➜ | 1/4/1356:1361,1/4/1370:1375 | NA | NA |
110 | ➜ | 1/4/1415:1416,1/4/1582:1587 | NA | NA |
111 | ➜ | 1/4/1417:1421,1/4/1577:1581 | NA | NA |
112 | ➜ | 1/4/1433:1435,1/4/1557:1560 | NA | NA |
113 | ➜ | 1/4/1437:1440,1/4/1551:1555 | NA | NA |
114 | ➜ | 1/4/1448:1450,1/4/1462:1463 | NA | NA |
115 | ➜ | 1/4/1450A:1451,1/4/1459:1461 | NA | NA |
116 | ➜ | 1/4/1469:1473,1/4/1518:1523 | NA | NA |
117 | ➜ | 1/4/1481:1482,1/4/1506:1510 | NA | NA |
118 | ➜ | 1/4/1482:1486,1/4/1503:1506 | NA | NA |
119 | ➜ | 1/4/1489:1491,1/4/1499:1500 | NA | NA |
120 | ➜ | 1/4/1526:1530,1/4/1539:1546 | NA | NA |
121 | ➜ | 1/4/1651:1656,1/4/2004:2006 | NA | NA |
122 | ➜ | 1/4/1663:1666,1/4/1994:1997 | NA | NA |
123 | ➜ | 1/4/1666:1669,1/4/1993:1994 | NA | NA |
124 | ➜ | 1/4/1669:1674,1/4/1990:1993 | NA | NA |
125 | ➜ | 1/4/1686:1691,1/4/1696:1702 | NA | NA |
126 | ➜ | 1/4/1770:1771,1/4/1980:1982 | NA | NA |
127 | ➜ | 1/4/1798:1804,1/4/1813:1821 | NA | NA |
128 | ➜ | 1/4/1837:1840,1/4/1902:1904 | NA | NA |
129 | ➜ | 1/4/1841:1842,1/4/1898:1901 | NA | NA |
130 | ➜ | 1/4/1846:1850,1/4/1892:1894 | NA | NA |
131 | ➜ | 1/4/1851:1855,1/4/1887:1891 | NA | NA |
132 | ➜ | 1/4/1856:1860,1/4/1882:1886 | NA | NA |
133 | ➜ | 1/4/1933:1934,1/4/1964:1967 | NA | NA |
134 | ➜ | 1/4/1934:1945,1/4/1961:1964 | NA | NA |
135 | ➜ | 1/4/2050:2052,1/4/2617:2618 | NA | NA |
136 | ➜ | 1/4/2054:2057,1/4/2611:2615 | NA | NA |
137 | ➜ | 1/4/2067:2069,1/4/2442:2443 | NA | NA |
138 | ➜ | 1/4/2070:2071,1/4/2438:2441 | NA | NA |
139 | ➜ | 1/4/2081:2083,1/4/2236:2239 | NA | NA |
140 | ➜ | 1/4/2085:2087,1/4/2232:2234 | NA | NA |
141 | ➜ | 1/4/2099:2100,1/4/2188:2190 | NA | NA |
142 | ➜ | 1/4/2100:2105,1/4/2184:2188 | NA | NA |
143 | ➜ | 1/4/2105:2110,1/4/2179:2184 | NA | NA |
144 | ➜ | 1/4/2110:2117,1/4/2172:2179 | NA | NA |
145 | ➜ | 1/4/2117:2129,1/4/2159:2172 | NA | NA |
146 | ➜ | 1/4/2129:2138,1/4/2156:2159 | NA | NA |
147 | ➜ | 1/4/2138:2143,1/4/2149:2156 | NA | NA |
148 | ➜ | 1/4/2297:2299,1/4/2317:2321 | NA | NA |
149 | ➜ | 1/4/2350:2353,1/4/2364:2367 | NA | NA |
150 | ➜ | 1/4/2401:2403,1/4/2414:2415 | NA | NA |
151 | ➜ | 1/4/2454:2455,1/4/2496:2498 | NA | NA |
152 | ➜ | 1/4/2457:2459,1/4/2493:2494 | NA | NA |
153 | ➜ | 1/4/2459:2461,1/4/2489:2493 | NA | NA |
154 | ➜ | 1/4/2466:2470,1/4/2480:2484 | NA | NA |
155 | ➜ | 1/4/2507:2508,1/4/2580:2582 | NA | NA |
156 | ➜ | 1/4/2510:2512,1/4/2574:2578 | NA | NA |
157 | ➜ | 1/4/2512:2513,1/4/2571:2574 | NA | NA |
158 | ➜ | 1/4/2522:2523,1/4/2540:2543 | NA | NA |
159 | ➜ | 1/4/2591:2592,1/4/2601:2603 | NA | NA |
160 | ➜ | 1/4/2636:2640,1/4/2774:2782 | NA | NA |
161 | ➜ | 1/4/2640:2642,1/4/2773:2774 | NA | NA |
162 | ➜ | 1/4/2642:2643,1/4/2771:2773 | NA | NA |
163 | ➜ | 1/4/2652:2658,1/4/2663:2668 | NA | NA |
164 | ➜ | 1/4/2680:2684,1/4/2725:2727 | NA | NA |
165 | ➜ | 1/4/2687:2691,1/4/2718:2722 | NA | NA |
166 | ➜ | 1/4/2695:2696,1/4/2711:2714 | NA | NA |
167 | ➜ | 1/4/2737:2742,1/4/2762:2767 | NA | NA |
168 | ➜ | 1/4/2838:2839,1/4/2878:2880 | NA | NA |
169 | ➜ | 1/4/2843:2845,1/4/2871:2874 | NA | NA |
170 | ➜ | 1/4/2847:2852,1/4/2865:2869 | NA | NA |
171 | ➜ | 1/5/20:22,1/5/61:63 | NA | NA |
172 | ➜ | 1/5/23:28,1/5/56:60 | NA | NA |
173 | ➜ | 1/5/30:31,1/5/51:54 | NA | NA |
174 | ➜ | 1/5/34:38,1/5/44:48 | NA | NA |
175 | ➜ | 1/5/71:79,1/5/98:106 | NA | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/1/12:22 | NA | NA |
2 | ➜ | 1/1/76:78 | NA | NA |
3 | ➜ | 1/1/158:163 | NA | NA |
4 | ➜ | 1/1/186:191 | NA | NA |
5 | ➜ | 1/1/200:217 | NA | NA |
6 | ➜ | 1/1/259:267 | NA | NA |
7 | ➜ | 1/1/296:301 | NA | NA |
8 | ➜ | 1/1/320:333 | NA | NA |
9 | ➜ | 1/1/342:347 | NA | NA |
10 | ➜ | 1/1/379:384 | NA | NA |
11 | ➜ | 1/1/419:424 | NA | NA |
12 | ➜ | 1/1/458:473 | NA | NA |
13 | ➜ | 1/1/522:527 | NA | NA |
14 | ➜ | 1/1/617:623 | NA | NA |
15 | ➜ | 1/1/683:707 | NA | NA |
16 | ➜ | 1/1/726:731 | NA | NA |
17 | ➜ | 1/1/786:796 | NA | NA |
18 | ➜ | 1/1/838:848 | NA | NA |
19 | ➜ | 1/1/862:867 | NA | NA |
20 | ➜ | 1/1/897:902 | NA | NA |
21 | ➜ | 1/1/962:973 | NA | NA |
22 | ➜ | 1/1/1008:1021 | NA | NA |
23 | ➜ | 1/1/1025:1034 | NA | NA |
24 | ➜ | 1/1/1076:1081 | NA | NA |
25 | ➜ | 1/1/1089:1096 | NA | NA |
26 | ➜ | 1/1/1119:1154 | NA | NA |
27 | ➜ | 1/1/1162:1174 | NA | NA |
28 | ➜ | 1/1/1265:1270 | NA | NA |
29 | ➜ | 1/1/1312:1326 | NA | NA |
30 | ➜ | 1/1/1356:1366 | NA | NA |
31 | ➜ | 1/1/1445:1457 | NA | NA |
32 | ➜ | 1/1/1515:1520 | NA | NA |
33 | ➜ | 1/2/12:24 | NA | NA |
34 | ➜ | 1/2/29:42 | NA | NA |
35 | ➜ | 1/2/53:61 | NA | NA |
36 | ➜ | 1/4/59:68 | NA | NA |
37 | ➜ | 1/4/87:95 | NA | NA |
38 | ➜ | 1/4/123:128 | NA | NA |
39 | ➜ | 1/4/139:142A | NA | NA |
40 | ➜ | 1/4/154A:171 | NA | NA |
41 | ➜ | 1/4/194:201 | NA | NA |
42 | ➜ | 1/4/225:230 | NA | NA |
43 | ➜ | 1/4/246:252 | NA | NA |
44 | ➜ | 1/4/271I:271O | NA | NA |
45 | ➜ | 1/4/305:312 | NA | NA |
46 | ➜ | 1/4/319:323 | NA | NA |
47 | ➜ | 1/4/327:335 | NA | NA |
48 | ➜ | 1/4/382:392 | NA | NA |
49 | ➜ | 1/4/410:417 | NA | NA |
50 | ➜ | 1/4/462:467 | NA | NA |
51 | ➜ | 1/4/487:493 | NA | NA |
52 | ➜ | 1/4/543:549 | NA | NA |
53 | ➜ | 1/4/566:575 | NA | NA |
54 | ➜ | 1/4/612:615 | NA | NA |
55 | ➜ | 1/4/629:634 | NA | NA |
56 | ➜ | 1/4/641:647 | NA | NA |
57 | ➜ | 1/4/712:719 | NA | NA |
58 | ➜ | 1/4/744:753 | NA | NA |
59 | ➜ | 1/4/779:785 | NA | NA |
60 | ➜ | 1/4/825:832 | NA | NA |
61 | ➜ | 1/4/880:897 | NA | NA |
62 | ➜ | 1/4/955:962 | NA | NA |
63 | ➜ | 1/4/978:985 | NA | NA |
64 | ➜ | 1/4/1063:1075 | NA | NA |
65 | ➜ | 1/4/1092:1099 | NA | NA |
66 | ➜ | 1/4/1171:1178 | NA | NA |
67 | ➜ | 1/4/1222:1227 | NA | NA |
68 | ➜ | 1/4/1281:1289 | NA | NA |
69 | ➜ | 1/4/1324:1330 | NA | NA |
70 | ➜ | 1/4/1363:1368 | NA | NA |
71 | ➜ | 1/4/1389:1398 | NA | NA |
72 | ➜ | 1/4/1451:1459 | NA | NA |
73 | ➜ | 1/4/1492:1498 | NA | NA |
74 | ➜ | 1/4/1532:1537 | NA | NA |
75 | ➜ | 1/4/1565:1568 | NA | NA |
76 | ➜ | 1/4/1612:1619 | NA | NA |
77 | ➜ | 1/4/1631:1635 | NA | NA |
78 | ➜ | 1/4/1691:1696 | NA | NA |
79 | ➜ | 1/4/1720:1742 | NA | NA |
80 | ➜ | 1/4/1752:1756 | NA | NA |
81 | ➜ | 1/4/1777:1787 | NA | NA |
82 | ➜ | 1/4/1806:1811 | NA | NA |
83 | ➜ | 1/4/1864:1878 | NA | NA |
84 | ➜ | 1/4/1909:1921 | NA | NA |
85 | ➜ | 1/4/1949:1957 | NA | NA |
86 | ➜ | 1/4/2027:2036 | NA | NA |
87 | ➜ | 1/4/2143:2149 | NA | NA |
88 | ➜ | 1/4/2205:2219 | NA | NA |
89 | ➜ | 1/4/2248:2256 | NA | NA |
90 | ➜ | 1/4/2264:2276 | NA | NA |
91 | ➜ | 1/4/2303:2313 | NA | NA |
92 | ➜ | 1/4/2324:2331 | NA | NA |
93 | ➜ | 1/4/2355:2362 | NA | NA |
94 | ➜ | 1/4/2374:2379 | NA | NA |
95 | ➜ | 1/4/2404:2413 | NA | NA |
96 | ➜ | 1/4/2471:2479 | NA | NA |
97 | ➜ | 1/4/2528:2535 | NA | NA |
98 | ➜ | 1/4/2551:2557 | NA | NA |
99 | ➜ | 1/4/2594:2599 | NA | NA |
100 | ➜ | 1/4/2658:2663 | NA | NA |
101 | ➜ | 1/4/2701:2706 | NA | NA |
102 | ➜ | 1/4/2745:2759 | NA | NA |
103 | ➜ | 1/4/2819:2827 | NA | NA |
104 | ➜ | 1/4/2856:2861 | NA | NA |
105 | ➜ | 1/5/38:44 | NA | NA |
106 | ➜ | 1/5/86:91 | NA | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/1/46:47,1/1/361:367,1/1/393:395 | NA | NA |
2 | ➜ | 1/1/586:588,1/1/651:654,1/1/754:755 | NA | NA |
3 | ➜ | 1/1/672:673,1/1/717:725,1/1/732:734 | NA | NA |
4 | ➜ | 1/1/826:829,1/1/857:861,1/1/868:874 | NA | NA |
5 | ➜ | 1/1/954:962,1/1/973:985,1/1/1220:1226 | NA | NA |
6 | ➜ | 1/1/1073:1074,1/1/1083:1087,1/1/1098:1102 | NA | NA |
7 | ➜ | 1/1/1116:1119,1/1/1154:1161,1/1/1175:1184 | NA | NA |
8 | ➜ | 1/4/30:31,1/4/474:481,1/4/509:510 | NA | NA |
9 | ➜ | 1/4/56:57,1/4/70:76,1/4/110:114 | NA | NA |
10 | ➜ | 1/4/269:271B,1/4/271V:272B,1/4/366:370 | NA | NA |
11 | ➜ | 1/4/682:689,1/4/773:775,1/4/791:795 | NA | NA |
12 | ➜ | 1/4/698:700,1/4/732:737,1/4/760:763 | NA | NA |
13 | ➜ | 1/4/1054:1058,1/4/1080:1091,1/4/1100:1105 | NA | NA |
14 | ➜ | 1/4/1298:1303,1/4/1625:1627,1/4/1639:1642 | NA | NA |
15 | ➜ | 1/4/1306:1309,1/4/1605:1611,1/4/1620:1622 | NA | NA |
16 | ➜ | 1/4/1344:1350,1/4/1381:1385,1/4/1402:1403 | NA | NA |
17 | ➜ | 1/4/2091:2093,1/4/2196:2200,1/4/2223:2228 | NA | NA |
18 | ➜ | 1/4/2282:2284,1/4/2384:2396,1/4/2420:2427 | NA | NA |
19 | ➜ | 1/4/2295:2297,1/4/2321:2323,1/4/2332:2337 | NA | NA |
20 | ➜ | 1/4/2517:2520,1/4/2545:2547,1/4/2561:2567 | NA | NA |
21 | ➜ | 1/4/2814:2815,1/4/2831:2836,1/4/2882:2886 | NA | NA |
22 | ➜ | 1/5/11:18,1/5/65:69,1/5/108:110 | NA | NA |
Problematic loops
No problematic loops
Coloring options: