5OT7 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5OT7_001 | 1/1/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_5OT7_002 | 1/1/76:78 | No text annotation Not in a motif group | ||
| HL_5OT7_003 | 1/1/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_5OT7_004 | 1/1/186:191 | No text annotation Not in a motif group | ||
| HL_5OT7_005 | 1/1/200:217 | No text annotation Not in a motif group | ||
| HL_5OT7_006 | 1/1/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_5OT7_007 | 1/1/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_5OT7_008 | 1/1/320:333 | No text annotation Not in a motif group | homologous HL_6CZR_079 HL_81205.2 | |
| HL_5OT7_009 | 1/1/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_5OT7_010 | 1/1/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_5OT7_011 | 1/1/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_5OT7_012 | 1/1/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_5OT7_013 | 1/1/522:527 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_5OT7_014 | 1/1/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_5OT7_015 | 1/1/683:707 | No text annotation Not in a motif group | ||
| HL_5OT7_016 | 1/1/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_5OT7_017 | 1/1/786:796 | No text annotation Not in a motif group | homologous HL_6CZR_088 HL_12326.1 | |
| HL_5OT7_018 | 1/1/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_53837.1 | |
| HL_5OT7_019 | 1/1/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_5OT7_020 | 1/1/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_5OT7_021 | 1/1/962:973 | No text annotation Not in a motif group | geometric HL_4V90_032 HL_14843.1 | |
| HL_5OT7_022 | 1/1/1008:1021 | No text annotation Not in a motif group | ||
| HL_5OT7_023 | 1/1/1025:1034 | No text annotation Not in a motif group | ||
| HL_5OT7_024 | 1/1/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_5OT7_025 | 1/1/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_5OT7_026 | 1/1/1119:1154 | No text annotation Not in a motif group | ||
| HL_5OT7_027 | 1/1/1162:1174 | No text annotation Not in a motif group | geometric HL_2Y9H_005 HL_47100.1 | |
| HL_5OT7_028 | 1/1/1265:1270 | No text annotation Not in a motif group | ||
| HL_5OT7_029 | 1/1/1312:1326 | No text annotation Not in a motif group | ||
| HL_5OT7_030 | 1/1/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_5OT7_031 | 1/1/1445:1457 | No text annotation Not in a motif group | ||
| HL_5OT7_032 | 1/1/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_5OT7_033 | 1/2/12:24 | No text annotation Not in a motif group | ||
| HL_5OT7_034 | 1/2/29:42 | No text annotation Not in a motif group | ||
| HL_5OT7_035 | 1/2/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5WWT_002 HL_22280.1 | |
| HL_5OT7_036 | 1/4/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_5OT7_037 | 1/4/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_5OT7_038 | 1/4/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_5OT7_039 | 1/4/139:142A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_5OT7_040 | 1/4/154A:171 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_5OT7_041 | 1/4/194:201 | No text annotation Not in a motif group | geometric HL_7RQB_006 HL_06192.2 | |
| HL_5OT7_042 | 1/4/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_5OT7_043 | 1/4/246:252 | No text annotation Not in a motif group | homologous HL_7A0S_008 HL_67216.7 | |
| HL_5OT7_044 | 1/4/271I:271O | No text annotation Not in a motif group | ||
| HL_5OT7_045 | 1/4/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_5OT7_046 | 1/4/319:323 | No text annotation Not in a motif group | homologous HL_4WF9_011 HL_75407.1 | |
| HL_5OT7_047 | 1/4/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_5OT7_048 | 1/4/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_5OT7_049 | 1/4/410:417 | No text annotation Not in a motif group | homologous HL_7A0S_014 HL_96598.1 | |
| HL_5OT7_050 | 1/4/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_5OT7_051 | 1/4/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_5OT7_052 | 1/4/543:549 | GNRA Not in a motif group | geometric HL_4Y1M_003 HL_42097.1 | |
| HL_5OT7_053 | 1/4/566:575 | No text annotation Not in a motif group | geometric HL_7A0S_018 HL_89380.2 | |
| HL_5OT7_054 | 1/4/612:615 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_5OT7_055 | 1/4/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_5OT7_056 | 1/4/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.1 | |
| HL_5OT7_057 | 1/4/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_5OT7_058 | 1/4/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_5OT7_059 | 1/4/779:785 | No text annotation Not in a motif group | ||
| HL_5OT7_060 | 1/4/825:832 | No text annotation Not in a motif group | ||
| HL_5OT7_061 | 1/4/880:897 | No text annotation Not in a motif group | ||
| HL_5OT7_062 | 1/4/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_5OT7_063 | 1/4/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_5OT7_064 | 1/4/1063:1075 | No text annotation Not in a motif group | ||
| HL_5OT7_065 | 1/4/1092:1099 | No text annotation Not in a motif group | homologous HL_7RQB_030 NA | |
| HL_5OT7_066 | 1/4/1171:1178 | No text annotation Not in a motif group | ||
| HL_5OT7_067 | 1/4/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_5OT7_068 | 1/4/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_5OT7_069 | 1/4/1324:1330 | No text annotation Not in a motif group | homologous HL_4WF9_033 HL_46680.1 | |
| HL_5OT7_070 | 1/4/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_5OT7_071 | 1/4/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_5OT7_072 | 1/4/1451:1459 | No text annotation Not in a motif group | homologous HL_7RQB_037 HL_32426.1 | |
| HL_5OT7_073 | 1/4/1492:1498 | No text annotation Not in a motif group | ||
| HL_5OT7_074 | 1/4/1532:1537 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_5OT7_075 | 1/4/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_5OT7_076 | 1/4/1612:1619 | No text annotation Not in a motif group | homologous HL_7A0S_040 HL_64430.2 | |
| HL_5OT7_077 | 1/4/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_5OT7_078 | 1/4/1691:1696 | UNCG Not in a motif group | homologous HL_4WF9_040 HL_03562.2 | |
| HL_5OT7_079 | 1/4/1720:1742 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_5OT7_080 | 1/4/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_5OT7_081 | 1/4/1777:1787 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.5 | |
| HL_5OT7_082 | 1/4/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_5OT7_083 | 1/4/1864:1878 | No text annotation Not in a motif group | homologous HL_7A0S_047 HL_42097.1 | |
| HL_5OT7_084 | 1/4/1909:1921 | No text annotation Not in a motif group | ||
| HL_5OT7_085 | 1/4/1949:1957 | No text annotation Not in a motif group | homologous HL_4WF9_046 HL_51824.1 | |
| HL_5OT7_086 | 1/4/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_5OT7_087 | 1/4/2143:2149 | No text annotation Not in a motif group | ||
| HL_5OT7_088 | 1/4/2205:2219 | No text annotation Not in a motif group | geometric HL_5SWD_005 HL_49678.1 | |
| HL_5OT7_089 | 1/4/2248:2256 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.2 | |
| HL_5OT7_090 | 1/4/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_5OT7_091 | 1/4/2303:2313 | No text annotation Not in a motif group | homologous HL_4WF9_051 NA | |
| HL_5OT7_092 | 1/4/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_5OT7_093 | 1/4/2355:2362 | No text annotation Not in a motif group | homologous HL_7A0S_056 HL_84085.2 | |
| HL_5OT7_094 | 1/4/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_5OT7_095 | 1/4/2404:2413 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_30784.2 | |
| HL_5OT7_096 | 1/4/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_06192.2 | |
| HL_5OT7_097 | 1/4/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_5OT7_098 | 1/4/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_5OT7_099 | 1/4/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_5OT7_100 | 1/4/2658:2663 | No text annotation Not in a motif group | homologous HL_7RQB_064 HL_42097.1 | |
| HL_5OT7_101 | 1/4/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_5OT7_102 | 1/4/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_5OT7_103 | 1/4/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_5OT7_104 | 1/4/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 | |
| HL_5OT7_105 | 1/5/38:44 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_5OT7_106 | 1/5/86:91 | No text annotation Not in a motif group | homologous HL_7A0S_070 HL_42097.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5OT7_001 | 1/1/30:32, 1/1/552:553 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.2 | |
| IL_5OT7_002 | 1/1/44:46, 1/1/395:398 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_5OT7_003 | 1/1/47:52, 1/1/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_5OT7_004 | 1/1/54:56, 1/1/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_5OT7_005 | 1/1/63:66, 1/1/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_5OT7_006 | 1/1/67:69, 1/1/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_5OT7_007 | 1/1/73:76, 1/1/78:96 | No text annotation Not in a motif group | ||
| IL_5OT7_008 | 1/1/128:131, 1/1/231:233 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_009 IL_82068.2 | |
| IL_5OT7_009 | 1/1/132:136, 1/1/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_5OT7_010 | 1/1/148:152, 1/1/170:174 | No text annotation Not in a motif group | ||
| IL_5OT7_011 | 1/1/152:154, 1/1/167:170 | No text annotation Not in a motif group | geometric IL_4WSM_372 IL_33061.1 | |
| IL_5OT7_012 | 1/1/242:247, 1/1/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_5OT7_013 | 1/1/249:254, 1/1/272:275 | No text annotation Not in a motif group | ||
| IL_5OT7_014 | 1/1/292:293, 1/1/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_5OT7_015 | 1/1/367:369, 1/1/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.13 | |
| IL_5OT7_016 | 1/1/371:375, 1/1/389:390 | C-loop Not in a motif group | geometric IL_4LFB_015 IL_75255.1 | |
| IL_5OT7_017 | 1/1/375:376, 1/1/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.2 | |
| IL_5OT7_018 | 1/1/409:417, 1/1/426:433 | No text annotation Not in a motif group | homologous IL_6CZR_129 IL_58819.1 | |
| IL_5OT7_019 | 1/1/446:450, 1/1/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_6CZR_130 IL_88269.3 | |
| IL_5OT7_020 | 1/1/450:455, 1/1/476:483 | No text annotation Not in a motif group | homologous IL_4LFB_019 IL_11882.1 | |
| IL_5OT7_021 | 1/1/504:511, 1/1/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_5OT7_022 | 1/1/515:521, 1/1/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_5OT7_023 | 1/1/580:584, 1/1/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_135 IL_17136.1 | |
| IL_5OT7_024 | 1/1/594:596, 1/1/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_5OT7_025 | 1/1/597:598, 1/1/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_5OT7_026 | 1/1/605:612, 1/1/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_5OT7_027 | 1/1/654:655, 1/1/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_5OT7_028 | 1/1/657:658, 1/1/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_5OT7_029 | 1/1/661:666, 1/1/740:744 | No text annotation Not in a motif group | ||
| IL_5OT7_030 | 1/1/673:680, 1/1/710:717 | No text annotation Not in a motif group | ||
| IL_5OT7_031 | 1/1/765:773, 1/1/806:812 | No text annotation Not in a motif group | ||
| IL_5OT7_032 | 1/1/774:778, 1/1/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_5OT7_033 | 1/1/779:783, 1/1/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_145 IL_17136.1 | |
| IL_5OT7_034 | 1/1/887:894, 1/1/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_5OT7_035 | 1/1/922:923, 1/1/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_5OT7_036 | 1/1/925:927, 1/1/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_5OT7_037 | 1/1/933:936, 1/1/1379:1384 | No text annotation Not in a motif group | ||
| IL_5OT7_038 | 1/1/948:954, 1/1/1226:1233 | No text annotation Not in a motif group | ||
| IL_5OT7_039 | 1/1/985:988, 1/1/1218:1220 | No text annotation Not in a motif group | ||
| IL_5OT7_040 | 1/1/1048:1050, 1/1/1208:1209 | No text annotation Not in a motif group | ||
| IL_5OT7_041 | 1/1/1052:1056, 1/1/1204:1206 | No text annotation Not in a motif group | homologous IL_6CZR_154 IL_76319.2 | |
| IL_5OT7_042 | 1/1/1057:1058, 1/1/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_5OT7_043 | 1/1/1060:1061, 1/1/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.13 | |
| IL_5OT7_044 | 1/1/1061:1063, 1/1/1193:1195 | No text annotation Not in a motif group | geometric IL_5J7L_050 IL_95997.1 | |
| IL_5OT7_045 | 1/1/1259:1264, 1/1/1272:1276 | No text annotation Not in a motif group | ||
| IL_5OT7_046 | 1/1/1264:1265, 1/1/1270:1272 | Single stack bend Not in a motif group | geometric IL_7KGA_006 IL_76488.2 | |
| IL_5OT7_047 | 1/1/1303:1310, 1/1/1328:1334 | No text annotation Not in a motif group | ||
| IL_5OT7_048 | 1/1/1350:1352, 1/1/1371:1372 | Single stack bend Not in a motif group | geometric IL_7RQB_058 IL_76488.2 | |
| IL_5OT7_049 | 1/1/1352:1354, 1/1/1368:1371 | No text annotation Not in a motif group | ||
| IL_5OT7_050 | 1/1/1399:1401, 1/1/1501:1504 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_5OT7_051 | 1/1/1401:1404, 1/1/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_5OT7_052 | 1/1/1405:1407, 1/1/1494:1496 | CC cWW Not in a motif group | geometric IL_4KNQ_002 IL_95997.1 | |
| IL_5OT7_053 | 1/1/1407:1409, 1/1/1491:1494 | No text annotation Not in a motif group | ||
| IL_5OT7_054 | 1/1/1412:1414, 1/1/1486:1488 | No text annotation Not in a motif group | homologous IL_4LFB_059 IL_95997.1 | |
| IL_5OT7_055 | 1/1/1416:1419, 1/1/1481:1484 | Double sheared Not in a motif group | homologous IL_6CZR_169 IL_09705.9 | |
| IL_5OT7_056 | 1/1/1431:1435, 1/1/1466:1469 | UAA/GAN Not in a motif group | geometric IL_5TBW_023 IL_07235.1 | |
| IL_5OT7_057 | 1/1/1435:1437, 1/1/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_5OT7_058 | 1/1/1440:1443, 1/1/1459:1461 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.2 | |
| IL_5OT7_059 | 1/2/1:3, 1/2/71:72 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.2 | |
| IL_5OT7_060 | 1/2/3:4, 1/2/69:71 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_5OT7_061 | 1/4/24:30, 1/4/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7RQB_001 IL_66414.6 | |
| IL_5OT7_062 | 1/4/36:37, 1/4/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_5OT7_063 | 1/4/42:43, 1/4/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_5OT7_064 | 1/4/81:85, 1/4/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_5OT7_065 | 1/4/183:185, 1/4/211:214 | No text annotation Not in a motif group | geometric IL_4V9F_053 IL_46796.1 | |
| IL_5OT7_066 | 1/4/188:194, 1/4/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_5OT7_067 | 1/4/239:245, 1/4/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_5OT7_068 | 1/4/272C:272E, 1/4/363E:365 | No text annotation Not in a motif group | geometric IL_6CZR_136 IL_05564.2 | |
| IL_5OT7_069 | 1/4/272J:279, 1/4/361:363 | No text annotation Not in a motif group | ||
| IL_5OT7_070 | 1/4/280:284, 1/4/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
| IL_5OT7_071 | 1/4/288:290, 1/4/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_5OT7_072 | 1/4/293:295, 1/4/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_5OT7_073 | 1/4/481:484, 1/4/496:509 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.6 | |
| IL_5OT7_074 | 1/4/564:566, 1/4/575:577 | No text annotation Not in a motif group | homologous IL_7A0S_011 IL_95997.1 | |
| IL_5OT7_075 | 1/4/606:610, 1/4/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
| IL_5OT7_076 | 1/4/672:674, 1/4/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
| IL_5OT7_077 | 1/4/674:678, 1/4/799:806 | No text annotation Not in a motif group | geometric IL_7A0S_015 IL_17470.6 | |
| IL_5OT7_078 | 1/4/697:698, 1/4/763:765 | Single bulged A Not in a motif group | homologous IL_5J7L_261 IL_37497.2 | |
| IL_5OT7_079 | 1/4/702:707, 1/4/724:730 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_5OT7_080 | 1/4/737:738, 1/4/758:760 | Single stack bend Not in a motif group | geometric IL_7A0S_083 IL_76488.2 | |
| IL_5OT7_081 | 1/4/738:741, 1/4/756:758 | Major groove platform with extra cWW Not in a motif group | geometric IL_5TBW_031 IL_05564.2 | |
| IL_5OT7_082 | 1/4/775:777, 1/4/787:791 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.6 | |
| IL_5OT7_083 | 1/4/837:838, 1/4/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_5OT7_084 | 1/4/844:846, 1/4/931:934 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 IL_52767.2 | |
| IL_5OT7_085 | 1/4/846:850, 1/4/927:931 | No text annotation Not in a motif group | geometric IL_7RQB_026 IL_94165.1 | |
| IL_5OT7_086 | 1/4/857:862, 1/4/915:920 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_7A0S_027 IL_81631.1 | |
| IL_5OT7_087 | 1/4/862:863, 1/4/913:915 | Minor groove platform Not in a motif group | geometric IL_4V9F_034 IL_42622.2 | |
| IL_5OT7_088 | 1/4/864:868, 1/4/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_5OT7_089 | 1/4/875:879, 1/4/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_5OT7_090 | 1/4/952:954, 1/4/963:965 | No text annotation Not in a motif group | homologous IL_7A0S_031 IL_95997.1 | |
| IL_5OT7_091 | 1/4/994:996, 1/4/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_5OT7_092 | 1/4/998:1002, 1/4/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.2 | |
| IL_5OT7_093 | 1/4/1004:1011, 1/4/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4WF9_037 IL_15861.7 | |
| IL_5OT7_094 | 1/4/1011:1013, 1/4/1149:1150 | Single bulged U Not in a motif group | homologous IL_7RQB_038 IL_83039.13 | |
| IL_5OT7_095 | 1/4/1018:1024, 1/4/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_5OT7_096 | 1/4/1024:1030, 1/4/1124:1140 | No text annotation Not in a motif group | ||
| IL_5OT7_097 | 1/4/1031:1034, 1/4/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_041 IL_82068.2 | |
| IL_5OT7_098 | 1/4/1040:1042, 1/4/1113:1115 | No text annotation Not in a motif group | geometric IL_4V9K_064 IL_95997.1 | |
| IL_5OT7_099 | 1/4/1043:1051, 1/4/1109:1112 | No text annotation Not in a motif group | ||
| IL_5OT7_100 | 1/4/1051:1052, 1/4/1107:1109 | No text annotation Not in a motif group | ||
| IL_5OT7_101 | 1/4/1058:1062, 1/4/1076:1080 | No text annotation Not in a motif group | ||
| IL_5OT7_102 | 1/4/1196:1198, 1/4/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7A0S_041 IL_52767.2 | |
| IL_5OT7_103 | 1/4/1202:1206, 1/4/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_5OT7_104 | 1/4/1208:1215, 1/4/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_5OT7_105 | 1/4/1219:1221, 1/4/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_5OT7_106 | 1/4/1262:1269, 1/4/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_5OT7_107 | 1/4/1319:1323, 1/4/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_5OT7_108 | 1/4/1351:1355, 1/4/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_5OT7_109 | 1/4/1356:1361, 1/4/1370:1375 | No text annotation Not in a motif group | ||
| IL_5OT7_110 | 1/4/1415:1416, 1/4/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_5OT7_111 | 1/4/1417:1421, 1/4/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_5OT7_112 | 1/4/1433:1435, 1/4/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_5OT7_113 | 1/4/1437:1440, 1/4/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_5OT7_114 | 1/4/1448:1450, 1/4/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
| IL_5OT7_115 | 1/4/1450A:1451, 1/4/1459:1461 | Single bulged A Not in a motif group | geometric IL_6D3P_004 IL_37497.2 | |
| IL_5OT7_116 | 1/4/1469:1473, 1/4/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_5OT7_117 | 1/4/1481:1482, 1/4/1506:1510 | No text annotation Not in a motif group | geometric IL_7RQB_061 IL_52493.1 | |
| IL_5OT7_118 | 1/4/1482:1486, 1/4/1503:1506 | No text annotation Not in a motif group | ||
| IL_5OT7_119 | 1/4/1489:1491, 1/4/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_5OT7_120 | 1/4/1526:1530, 1/4/1539:1546 | No text annotation Not in a motif group | ||
| IL_5OT7_121 | 1/4/1651:1656, 1/4/2004:2006 | No text annotation Not in a motif group | homologous IL_4WF9_062 IL_12566.2 | |
| IL_5OT7_122 | 1/4/1663:1666, 1/4/1994:1997 | No text annotation Not in a motif group | ||
| IL_5OT7_123 | 1/4/1666:1669, 1/4/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_1G1X_001 IL_50694.2 | |
| IL_5OT7_124 | 1/4/1669:1674, 1/4/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_7A0S_062 IL_82842.2 | |
| IL_5OT7_125 | 1/4/1686:1691, 1/4/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
| IL_5OT7_126 | 1/4/1770:1771, 1/4/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_5OT7_127 | 1/4/1798:1804, 1/4/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7A0S_065 IL_17069.3 | |
| IL_5OT7_128 | 1/4/1837:1840, 1/4/1902:1904 | No text annotation Not in a motif group | ||
| IL_5OT7_129 | 1/4/1841:1842, 1/4/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_5OT7_130 | 1/4/1846:1850, 1/4/1892:1894 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
| IL_5OT7_131 | 1/4/1851:1855, 1/4/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_5OT7_132 | 1/4/1856:1860, 1/4/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_5OT7_133 | 1/4/1933:1934, 1/4/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7A0S_071 IL_59677.2 | |
| IL_5OT7_134 | 1/4/1934:1945, 1/4/1961:1964 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_5OT7_135 | 1/4/2050:2052, 1/4/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_5OT7_136 | 1/4/2054:2057, 1/4/2611:2615 | No text annotation Not in a motif group | homologous IL_7A0S_074 IL_01206.1 | |
| IL_5OT7_137 | 1/4/2067:2069, 1/4/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_5OT7_138 | 1/4/2070:2071, 1/4/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_5OT7_139 | 1/4/2081:2083, 1/4/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_5OT7_140 | 1/4/2085:2087, 1/4/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_5OT7_141 | 1/4/2099:2100, 1/4/2188:2190 | No text annotation Not in a motif group | ||
| IL_5OT7_142 | 1/4/2100:2105, 1/4/2184:2188 | No text annotation Not in a motif group | ||
| IL_5OT7_143 | 1/4/2105:2110, 1/4/2179:2184 | No text annotation Not in a motif group | ||
| IL_5OT7_144 | 1/4/2110:2117, 1/4/2172:2179 | No text annotation Not in a motif group | ||
| IL_5OT7_145 | 1/4/2117:2129, 1/4/2159:2172 | No text annotation Not in a motif group | ||
| IL_5OT7_146 | 1/4/2129:2138, 1/4/2156:2159 | No text annotation Not in a motif group | ||
| IL_5OT7_147 | 1/4/2138:2143, 1/4/2149:2156 | No text annotation Not in a motif group | ||
| IL_5OT7_148 | 1/4/2297:2299, 1/4/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4WF9_086 IL_38958.7 | |
| IL_5OT7_149 | 1/4/2350:2353, 1/4/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_5OT7_150 | 1/4/2401:2403, 1/4/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
| IL_5OT7_151 | 1/4/2454:2455, 1/4/2496:2498 | Major groove platform Not in a motif group | homologous IL_4WF9_090 IL_27635.1 | |
| IL_5OT7_152 | 1/4/2457:2459, 1/4/2493:2494 | Major groove platform Not in a motif group | homologous IL_7A0S_085 IL_27635.1 | |
| IL_5OT7_153 | 1/4/2459:2461, 1/4/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_92788.2 | |
| IL_5OT7_154 | 1/4/2466:2470, 1/4/2480:2484 | Triple sheared Not in a motif group | homologous IL_7A0S_087 IL_56467.8 | |
| IL_5OT7_155 | 1/4/2507:2508, 1/4/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_5OT7_156 | 1/4/2510:2512, 1/4/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_095 IL_90933.2 | |
| IL_5OT7_157 | 1/4/2512:2513, 1/4/2571:2574 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_098 IL_71530.2 | |
| IL_5OT7_158 | 1/4/2522:2523, 1/4/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_5OT7_159 | 1/4/2591:2592, 1/4/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_5OT7_160 | 1/4/2636:2640, 1/4/2774:2782 | tSH-tHS-tHW Not in a motif group | geometric IL_7RQB_102 IL_04638.1 | |
| IL_5OT7_161 | 1/4/2640:2642, 1/4/2773:2774 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_76488.2 | |
| IL_5OT7_162 | 1/4/2642:2643, 1/4/2771:2773 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_5OT7_163 | 1/4/2652:2658, 1/4/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_5J7L_346 IL_16458.1 | |
| IL_5OT7_164 | 1/4/2680:2684, 1/4/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_5OT7_165 | 1/4/2687:2691, 1/4/2718:2722 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
| IL_5OT7_166 | 1/4/2695:2696, 1/4/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7A0S_097 IL_71530.2 | |
| IL_5OT7_167 | 1/4/2737:2742, 1/4/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7A0S_098 IL_49767.5 | |
| IL_5OT7_168 | 1/4/2838:2839, 1/4/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_5OT7_169 | 1/4/2843:2845, 1/4/2871:2874 | Decoding loop related Not in a motif group | homologous IL_7A0S_100 IL_02284.5 | |
| IL_5OT7_170 | 1/4/2847:2852, 1/4/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_5OT7_171 | 1/5/20:22, 1/5/61:63 | No text annotation Not in a motif group | geometric IL_3GM7_005 IL_95997.1 | |
| IL_5OT7_172 | 1/5/23:28, 1/5/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
| IL_5OT7_173 | 1/5/30:31, 1/5/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_5OT7_174 | 1/5/34:38, 1/5/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_5TBW_376 IL_58103.6 | |
| IL_5OT7_175 | 1/5/71:79, 1/5/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7A0S_106 IL_56455.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5OT7_001 | 1/1/46:47, 1/1/361:367, 1/1/393:395 | No text annotation Not in a motif group | ||
| J3_5OT7_002 | 1/1/586:588, 1/1/651:654, 1/1/754:755 | No text annotation Not in a motif group | ||
| J3_5OT7_003 | 1/1/672:673, 1/1/717:725, 1/1/732:734 | No text annotation Not in a motif group | ||
| J3_5OT7_004 | 1/1/826:829, 1/1/857:861, 1/1/868:874 | No text annotation Not in a motif group | homologous J3_6CZR_018 NA | |
| J3_5OT7_005 | 1/1/954:962, 1/1/973:985, 1/1/1220:1226 | No text annotation Not in a motif group | ||
| J3_5OT7_006 | 1/1/1073:1074, 1/1/1083:1087, 1/1/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_5OT7_007 | 1/1/1116:1119, 1/1/1154:1161, 1/1/1175:1184 | No text annotation Not in a motif group | ||
| J3_5OT7_008 | 1/4/30:31, 1/4/474:481, 1/4/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_5OT7_009 | 1/4/56:57, 1/4/70:76, 1/4/110:114 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
| J3_5OT7_010 | 1/4/269:271B, 1/4/271V:272B, 1/4/366:370 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
| J3_5OT7_011 | 1/4/682:689, 1/4/773:775, 1/4/791:795 | No text annotation Not in a motif group | ||
| J3_5OT7_012 | 1/4/698:700, 1/4/732:737, 1/4/760:763 | No text annotation Not in a motif group | ||
| J3_5OT7_013 | 1/4/1054:1058, 1/4/1080:1091, 1/4/1100:1105 | No text annotation Not in a motif group | ||
| J3_5OT7_014 | 1/4/1298:1303, 1/4/1625:1627, 1/4/1639:1642 | No text annotation Not in a motif group | homologous J3_7A0S_006 NA | |
| J3_5OT7_015 | 1/4/1306:1309, 1/4/1605:1611, 1/4/1620:1622 | No text annotation Not in a motif group | homologous J3_5J7L_042 NA | |
| J3_5OT7_016 | 1/4/1344:1350, 1/4/1381:1385, 1/4/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_5OT7_017 | 1/4/2091:2093, 1/4/2196:2200, 1/4/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_5OT7_018 | 1/4/2282:2284, 1/4/2384:2396, 1/4/2420:2427 | No text annotation Not in a motif group | ||
| J3_5OT7_019 | 1/4/2295:2297, 1/4/2321:2323, 1/4/2332:2337 | No text annotation Not in a motif group | ||
| J3_5OT7_020 | 1/4/2517:2520, 1/4/2545:2547, 1/4/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_5OT7_021 | 1/4/2814:2815, 1/4/2831:2836, 1/4/2882:2886 | No text annotation Not in a motif group | homologous J3_7RQB_014 NA | |
| J3_5OT7_022 | 1/5/11:18, 1/5/65:69, 1/5/108:110 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: