7D80 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7D80_001 | 1/A/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
| HL_7D80_002 | 1/A/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
| HL_7D80_003 | 1/A/123:128 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_75407.1 | |
| HL_7D80_004 | 1/A/136:143 | No text annotation Not in a motif group | ||
| HL_7D80_005 | 1/A/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_7D80_006 | 1/A/188:208 | No text annotation Not in a motif group | ||
| HL_7D80_007 | 1/A/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_7D80_008 | 1/A/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_7D80_009 | 1/A/305:312 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_7D80_010 | 1/A/319:323 | No text annotation Not in a motif group | homologous HL_7A0S_011 HL_75407.1 | |
| HL_7D80_011 | 1/A/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_7D80_012 | 1/A/381:393 | No text annotation Not in a motif group | ||
| HL_7D80_013 | 1/A/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.1 | |
| HL_7D80_014 | 1/A/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_7D80_015 | 1/A/486:494 | No text annotation Not in a motif group | geometric HL_4V9F_032 HL_49288.1 | |
| HL_7D80_017 | 1/A/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_150 HL_89380.2 | |
| HL_7D80_018 | 1/A/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
| HL_7D80_019 | 1/A/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_7D80_020 | 1/A/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_77805.2 | |
| HL_7D80_021 | 1/A/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_7D80_022 | 1/A/744:753 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_7D80_023 | 1/A/778:786 | No text annotation Not in a motif group | ||
| HL_7D80_024 | 1/A/826:831 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_64365.1 | |
| HL_7D80_026 | 1/A/955:962 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_7D80_027 | 1/A/977:986 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_7D80_028 | 1/A/1062:1076 | No text annotation Not in a motif group | ||
| HL_7D80_029 | 1/A/1092:1099 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.2 | |
| HL_7D80_031 | 1/A/1222:1227 | No text annotation Not in a motif group | homologous HL_4WF9_031 HL_87030.2 | |
| HL_7D80_032 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_7D80_033 | 1/A/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_7D80_034 | 1/A/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_7D80_035 | 1/A/1388:1399 | No text annotation Not in a motif group | ||
| HL_7D80_036 | 1/A/1451:1459 | No text annotation Not in a motif group | geometric HL_5J7L_169 HL_53837.1 | |
| HL_7D80_037 | 1/A/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_7D80_038 | 1/A/1531:1540 | No text annotation Not in a motif group | ||
| HL_7D80_039 | 1/A/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_7D80_040 | 1/A/1612:1619 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.2 | |
| HL_7D80_041 | 1/A/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
| HL_7D80_042 | 1/A/1691:1696 | UNCG Not in a motif group | homologous HL_4WF9_040 HL_03562.2 | |
| HL_7D80_043 | 1/A/1727:1733 | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.2 | |
| HL_7D80_044 | 1/A/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_7D80_045 | 1/A/1776:1788 | No text annotation Not in a motif group | homologous HL_7A0S_045 HL_43667.1 | |
| HL_7D80_046 | 1/A/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_7D80_047 | 1/A/1868:1873 | GNRA Not in a motif group | geometric HL_1L9A_002 HL_42097.1 | |
| HL_7D80_049 | 1/A/1948:1958 | No text annotation Not in a motif group | ||
| HL_7D80_050 | 1/A/2027:2036 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_7D80_051 | 1/A/2142:2149 | No text annotation Not in a motif group | ||
| HL_7D80_052 | 1/A/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_7D80_053 | 1/A/2248:2256 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.2 | |
| HL_7D80_054 | 1/A/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
| HL_7D80_055 | 1/A/2303:2313 | No text annotation Not in a motif group | homologous HL_5J7L_188 HL_11805.3 | |
| HL_7D80_056 | 1/A/2323:2332 | No text annotation Not in a motif group | ||
| HL_7D80_057 | 1/A/2355:2362 | No text annotation Not in a motif group | homologous HL_7A0S_056 HL_84085.2 | |
| HL_7D80_058 | 1/A/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
| HL_7D80_059 | 1/A/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_7D80_060 | 1/A/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_7D80_061 | 1/A/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_7D80_062 | 1/A/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_7D80_063 | 1/A/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_7D80_064 | 1/A/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_7D80_065 | 1/A/2697:2710 | No text annotation Not in a motif group | ||
| HL_7D80_066 | 1/A/2745:2759 | No text annotation Not in a motif group | homologous HL_4WF9_062 HL_56677.7 | |
| HL_7D80_067 | 1/A/2796:2799 | No text annotation Not in a motif group | geometric HL_7RQB_009 HL_89098.1 | |
| HL_7D80_068 | 1/A/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_7D80_069 | 1/A/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 | |
| HL_7D80_070 | 1/B/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_7D80_071 | 1/B/76:92 | No text annotation Not in a motif group | ||
| HL_7D80_072 | 1/B/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_7D80_073 | 1/B/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_7D80_074 | 1/B/203:215 | No text annotation Not in a motif group | ||
| HL_7D80_075 | 1/B/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_7D80_076 | 1/B/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_7D80_077 | 1/B/320:333 | No text annotation Not in a motif group | homologous HL_6CZR_079 HL_81205.2 | |
| HL_7D80_078 | 1/B/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_7D80_079 | 1/B/378:386 | No text annotation Not in a motif group | ||
| HL_7D80_080 | 1/B/418:425 | No text annotation Not in a motif group | geometric HL_6CF2_001 HL_24068.2 | |
| HL_7D80_081 | 1/B/450:483 | No text annotation Not in a motif group | ||
| HL_7D80_082 | 1/B/521:528 | No text annotation Not in a motif group | ||
| HL_7D80_083 | 1/B/616:624 | No text annotation Not in a motif group | ||
| HL_7D80_084 | 1/B/689:698 | No text annotation Not in a motif group | geometric HL_5J7L_015 HL_12326.1 | |
| HL_7D80_085 | 1/B/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_7D80_086 | 1/B/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_7D80_087 | 1/B/840:846 | No text annotation Not in a motif group | ||
| HL_7D80_088 | 1/B/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_7D80_089 | 1/B/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_7D80_090 | 1/B/962:973 | No text annotation Not in a motif group | geometric HL_2Y9H_005 HL_47100.1 | |
| HL_7D80_091 | 1/B/1009:1020 | No text annotation Not in a motif group | ||
| HL_7D80_092 | 1/B/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_7D80_093 | 1/B/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_7D80_094 | 1/B/1134:1140 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_7D80_095 | 1/B/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_7D80_096 | 1/B/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_7D80_097 | 1/B/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_7D80_098 | 1/B/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_7D80_099 | 1/B/1449:1454 | UNCG Not in a motif group | geometric HL_4WF9_040 HL_03562.2 | |
| HL_7D80_100 | 1/B/1514:1521 | No text annotation Not in a motif group | ||
| HL_7D80_106 | 1/a/38:44 | No text annotation Not in a motif group | geometric HL_5J7L_203 HL_87939.1 | |
| HL_7D80_107 | 1/a/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
| HL_7D80_108 | 1/y/13:22 | No text annotation Not in a motif group | homologous HL_6JXM_001 HL_25462.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7D80_016 | No text annotation | ||
| HL_7D80_025 | No text annotation | ||
| HL_7D80_030 | No text annotation | ||
| HL_7D80_048 | No text annotation | ||
| HL_7D80_101 | No text annotation | ||
| HL_7D80_102 | No text annotation | ||
| HL_7D80_103 | No text annotation | ||
| HL_7D80_104 | No text annotation | ||
| HL_7D80_105 | No text annotation | ||
| HL_7D80_109 | No text annotation | ||
| HL_7D80_110 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7D80_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7A0S_001 IL_66414.6 | |
| IL_7D80_002 | 1/A/36:37, 1/A/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_7D80_003 | 1/A/43:45, 1/A/433:436 | No text annotation Not in a motif group | ||
| IL_7D80_004 | 1/A/81:85, 1/A/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_93699.1 | |
| IL_7D80_005 | 1/A/183:184, 1/A/212:214 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_7D80_006 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_7D80_007 | 1/A/269:271, 1/A/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_7D80_008 | 1/A/274:283, 1/A/357:363 | No text annotation Not in a motif group | ||
| IL_7D80_009 | 1/A/292:295, 1/A/343:348 | No text annotation Not in a motif group | homologous IL_7A0S_008 IL_07235.1 | |
| IL_7D80_010 | 1/A/481:484, 1/A/496:509 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.6 | |
| IL_7D80_011 | 1/A/535:539, 1/A/554:558 | Triple sheared Not in a motif group | geometric IL_5J7L_274 IL_56467.8 | |
| IL_7D80_012 | 1/A/564:566, 1/A/575:577 | No text annotation Not in a motif group | geometric IL_6CZR_157 IL_95997.1 | |
| IL_7D80_013 | 1/A/605:610, 1/A/618:623 | No text annotation Not in a motif group | ||
| IL_7D80_014 | 1/A/672:674, 1/A/806:808 | No text annotation Not in a motif group | geometric IL_5J7L_259 IL_95997.1 | |
| IL_7D80_015 | 1/A/674:678, 1/A/799:806 | No text annotation Not in a motif group | homologous IL_7RQB_018 IL_17470.6 | |
| IL_7D80_016 | 1/A/697:698, 1/A/763:765 | Single bulged A Not in a motif group | geometric IL_4V9F_025 IL_37497.2 | |
| IL_7D80_017 | 1/A/701:707, 1/A/724:731 | No text annotation Not in a motif group | ||
| IL_7D80_018 | 1/A/738:740, 1/A/757:758 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.1 | |
| IL_7D80_019 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases Not in a motif group | geometric IL_4V9F_030 IL_90991.6 | |
| IL_7D80_020 | 1/A/837:838, 1/A/940:942 | Single stack bend Not in a motif group | homologous IL_5J7L_266 IL_92001.1 | |
| IL_7D80_021 | 1/A/843:848, 1/A/930:935 | No text annotation Not in a motif group | ||
| IL_7D80_022 | 1/A/848:851, 1/A/926:930 | No text annotation Not in a motif group | ||
| IL_7D80_023 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.3 | |
| IL_7D80_024 | 1/A/862:868, 1/A/909:915 | No text annotation Not in a motif group | ||
| IL_7D80_025 | 1/A/870:872, 1/A/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
| IL_7D80_027 | 1/A/993:996, 1/A/1159:1161 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_1U6B_001 IL_82068.2 | |
| IL_7D80_028 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.2 | |
| IL_7D80_029 | 1/A/1003:1011, 1/A/1150:1152 | No text annotation Not in a motif group | ||
| IL_7D80_030 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.13 | |
| IL_7D80_031 | 1/A/1017:1024, 1/A/1140:1145 | No text annotation Not in a motif group | ||
| IL_7D80_032 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_7D80_033 | 1/A/1030:1034, 1/A/1121:1124 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5J7L_033 IL_71110.1 | |
| IL_7D80_034 | 1/A/1038:1041, 1/A/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5J7L_283 IL_30621.2 | |
| IL_7D80_035 | 1/A/1041:1043, 1/A/1112:1114 | Isolated cWH basepair Not in a motif group | geometric IL_4J50_003 IL_51629.2 | |
| IL_7D80_037 | 1/A/1196:1199, 1/A/1246:1250 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_110 IL_67743.1 | |
| IL_7D80_038 | 1/A/1202:1208, 1/A/1238:1243 | No text annotation Not in a motif group | ||
| IL_7D80_039 | 1/A/1208:1216, 1/A/1233:1238 | No text annotation Not in a motif group | ||
| IL_7D80_040 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_7D80_041 | 1/A/1319:1323, 1/A/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_7D80_042 | 1/A/1351:1356, 1/A/1375:1380 | No text annotation Not in a motif group | ||
| IL_7D80_043 | 1/A/1357:1362, 1/A/1369:1374 | tSH-tHW-tHS-cWW Not in a motif group | geometric IL_3LQX_002 IL_76308.4 | |
| IL_7D80_044 | 1/A/1415:1417, 1/A/1581:1587 | No text annotation Not in a motif group | ||
| IL_7D80_045 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN Not in a motif group | geometric IL_5J7L_295 IL_89002.2 | |
| IL_7D80_046 | 1/A/1430:1435, 1/A/1557:1563 | No text annotation Not in a motif group | ||
| IL_7D80_047 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7A0S_053 IL_04059.1 | |
| IL_7D80_048 | 1/A/1448:1451, 1/A/1459:1463 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1MFQ_004 IL_30621.2 | |
| IL_7D80_049 | 1/A/1468:1472, 1/A/1519:1524 | No text annotation Not in a motif group | geometric IL_3BNN_006 IL_25186.1 | |
| IL_7D80_050 | 1/A/1474:1478, 1/A/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.1 | |
| IL_7D80_051 | 1/A/1481:1482, 1/A/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.4 | |
| IL_7D80_052 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
| IL_7D80_053 | 1/A/1526:1530, 1/A/1541:1546 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_7D80_054 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_7D80_055 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.7 | |
| IL_7D80_056 | 1/A/1666:1674, 1/A/1990:1994 | No text annotation Not in a motif group | ||
| IL_7D80_057 | 1/A/1685:1691, 1/A/1696:1703 | No text annotation Not in a motif group | ||
| IL_7D80_058 | 1/A/1712:1718, 1/A/1742:1746 | No text annotation Not in a motif group | ||
| IL_7D80_059 | 1/A/1720:1725, 1/A/1735:1740 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7A0S_018 IL_86929.2 | |
| IL_7D80_060 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
| IL_7D80_061 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_7D80_062 | 1/A/1837:1840, 1/A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7A0S_066 IL_88739.1 | |
| IL_7D80_063 | 1/A/1841:1842, 1/A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_4WF9_071 IL_69996.1 | |
| IL_7D80_065 | 1/A/1864:1867, 1/A/1874:1878 | UAA/GAN Not in a motif group | homologous IL_4WF9_075 IL_77691.1 | |
| IL_7D80_066 | 1/A/1933:1945, 1/A/1961:1967 | No text annotation Not in a motif group | ||
| IL_7D80_067 | 1/A/2050:2053, 1/A/2616:2618 | No text annotation Not in a motif group | geometric IL_6CZR_136 IL_05564.2 | |
| IL_7D80_068 | 1/A/2053:2057, 1/A/2611:2616 | No text annotation Not in a motif group | ||
| IL_7D80_069 | 1/A/2067:2069, 1/A/2442:2443 | Single bulged U Not in a motif group | geometric IL_7RQB_080 IL_83039.13 | |
| IL_7D80_070 | 1/A/2069:2072, 1/A/2437:2442 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.2 | |
| IL_7D80_071 | 1/A/2081:2084, 1/A/2235:2239 | No text annotation Not in a motif group | ||
| IL_7D80_072 | 1/A/2085:2087, 1/A/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_7D80_073 | 1/A/2101:2105, 1/A/2184:2188 | No text annotation Not in a motif group | geometric IL_5BTM_001 IL_05145.2 | |
| IL_7D80_075 | 1/A/2136:2140, 1/A/2151:2155 | No text annotation Not in a motif group | ||
| IL_7D80_076 | 1/A/2202:2204, 1/A/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_7D80_077 | 1/A/2348:2353, 1/A/2364:2369 | No text annotation Not in a motif group | ||
| IL_7D80_078 | 1/A/2401:2403, 1/A/2414:2415 | Major groove platform Not in a motif group | homologous IL_7A0S_082 IL_27635.1 | |
| IL_7D80_079 | 1/A/2453:2454, 1/A/2498:2500 | Single stack bend Not in a motif group | homologous IL_4WF9_089 IL_76488.2 | |
| IL_7D80_080 | 1/A/2454:2455, 1/A/2496:2498 | Major groove platform Not in a motif group | geometric IL_4WF9_090 IL_27635.1 | |
| IL_7D80_081 | 1/A/2455:2461, 1/A/2489:2496 | No text annotation Not in a motif group | ||
| IL_7D80_082 | 1/A/2466:2470, 1/A/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_7D80_083 | 1/A/2508:2513, 1/A/2571:2580 | No text annotation Not in a motif group | ||
| IL_7D80_084 | 1/A/2522:2523, 1/A/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7A0S_091 IL_95601.3 | |
| IL_7D80_085 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A Not in a motif group | homologous IL_5J7L_344 IL_37497.2 | |
| IL_7D80_086 | 1/A/2636:2640, 1/A/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.1 | |
| IL_7D80_087 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7A0S_094 IL_16458.1 | |
| IL_7D80_088 | 1/A/2680:2684, 1/A/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_7D80_089 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_7D80_090 | 1/A/2695:2697, 1/A/2710:2714 | No text annotation Not in a motif group | geometric IL_5VSU_002 IL_55351.2 | |
| IL_7D80_091 | 1/A/2795:2796, 1/A/2799:2801 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_37497.2 | |
| IL_7D80_092 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_49460.2 | |
| IL_7D80_093 | 1/A/2838:2839, 1/A/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_7D80_094 | 1/A/2842:2846, 1/A/2870:2875 | No text annotation Not in a motif group | ||
| IL_7D80_095 | 1/A/2847:2852, 1/A/2865:2869 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.5 | |
| IL_7D80_096 | 1/B/28:32, 1/B/552:555 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_110 IL_67743.1 | |
| IL_7D80_097 | 1/B/44:45, 1/B/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_7D80_098 | 1/B/47:52, 1/B/359:361 | No text annotation Not in a motif group | geometric IL_5J7L_003 IL_11178.1 | |
| IL_7D80_099 | 1/B/54:56, 1/B/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_7D80_100 | 1/B/127:131, 1/B/231:234 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.2 | |
| IL_7D80_101 | 1/B/132:136, 1/B/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.3 | |
| IL_7D80_102 | 1/B/242:247, 1/B/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_7D80_103 | 1/B/249:252, 1/B/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_7D80_104 | 1/B/292:293, 1/B/304:308 | C-loop Not in a motif group | homologous IL_5J7L_016 IL_37712.2 | |
| IL_7D80_105 | 1/B/370:375, 1/B/389:391 | No text annotation Not in a motif group | ||
| IL_7D80_106 | 1/B/375:378, 1/B/386:389 | No text annotation Not in a motif group | geometric IL_4WSM_372 IL_33061.1 | |
| IL_7D80_107 | 1/B/409:416, 1/B/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_7D80_108 | 1/B/444:449, 1/B/486:490 | No text annotation Not in a motif group | ||
| IL_7D80_109 | 1/B/449:450, 1/B/483:486 | No text annotation Not in a motif group | ||
| IL_7D80_110 | 1/B/504:511, 1/B/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_7D80_111 | 1/B/515:521, 1/B/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_7D80_112 | 1/B/580:584, 1/B/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_7D80_113 | 1/B/594:596, 1/B/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_7D80_114 | 1/B/597:598, 1/B/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_7D80_115 | 1/B/605:613, 1/B/627:633 | No text annotation Not in a motif group | ||
| IL_7D80_116 | 1/B/654:655, 1/B/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5J7L_031 IL_50694.2 | |
| IL_7D80_117 | 1/B/658:659, 1/B/746:748 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
| IL_7D80_118 | 1/B/660:667, 1/B/739:745 | No text annotation Not in a motif group | ||
| IL_7D80_119 | 1/B/683:689, 1/B/698:707 | No text annotation Not in a motif group | ||
| IL_7D80_120 | 1/B/774:778, 1/B/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_7D80_121 | 1/B/779:783, 1/B/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.1 | |
| IL_7D80_122 | 1/B/887:894, 1/B/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_7D80_123 | 1/B/922:923, 1/B/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_7D80_124 | 1/B/925:927, 1/B/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_7D80_125 | 1/B/933:936, 1/B/1379:1384 | No text annotation Not in a motif group | homologous IL_6CZR_149 IL_93211.1 | |
| IL_7D80_126 | 1/B/951:954, 1/B/1226:1230 | No text annotation Not in a motif group | ||
| IL_7D80_127 | 1/B/993:997, 1/B/1044:1045 | Minor groove platform Not in a motif group | geometric IL_5J7L_043 IL_47078.1 | |
| IL_7D80_128 | 1/B/998:1001, 1/B/1039:1043 | No text annotation Not in a motif group | ||
| IL_7D80_129 | 1/B/1002:1006, 1/B/1023:1038 | No text annotation Not in a motif group | ||
| IL_7D80_130 | 1/B/1048:1050, 1/B/1208:1209 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.13 | |
| IL_7D80_131 | 1/B/1050:1056, 1/B/1204:1208 | No text annotation Not in a motif group | ||
| IL_7D80_132 | 1/B/1057:1058, 1/B/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_7D80_133 | 1/B/1060:1061, 1/B/1195:1197 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.2 | |
| IL_7D80_134 | 1/B/1061:1063, 1/B/1193:1195 | No text annotation Not in a motif group | homologous IL_6CZR_157 IL_95997.1 | |
| IL_7D80_135 | 1/B/1123:1128, 1/B/1144:1150 | No text annotation Not in a motif group | ||
| IL_7D80_136 | 1/B/1129:1134, 1/B/1140:1143 | No text annotation Not in a motif group | homologous IL_6CZR_159 NA | |
| IL_7D80_137 | 1/B/1158:1161, 1/B/1175:1181 | No text annotation Not in a motif group | homologous IL_5J7L_053 IL_42032.1 | |
| IL_7D80_138 | 1/B/1255:1258, 1/B/1277:1282 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_7D80_139 | 1/B/1259:1263, 1/B/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_7D80_140 | 1/B/1303:1309, 1/B/1328:1334 | No text annotation Not in a motif group | ||
| IL_7D80_141 | 1/B/1399:1401, 1/B/1501:1504 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
| IL_7D80_142 | 1/B/1401:1404, 1/B/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_7D80_143 | 1/B/1405:1407, 1/B/1494:1496 | No text annotation Not in a motif group | geometric IL_5MWI_002 IL_95997.1 | |
| IL_7D80_144 | 1/B/1407:1410, 1/B/1490:1494 | No text annotation Not in a motif group | ||
| IL_7D80_145 | 1/B/1412:1414, 1/B/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_7D80_146 | 1/B/1416:1419, 1/B/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_7D80_147 | 1/B/1430:1435, 1/B/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
| IL_7D80_148 | 1/B/1439:1442, 1/B/1460:1462 | Major groove platform with extra cWW Not in a motif group | geometric IL_3PDR_004 IL_18471.2 | |
| IL_7D80_149 | 1/B/1445:1449, 1/B/1454:1457 | No text annotation Not in a motif group | ||
| IL_7D80_150 | 1/B/1508:1509, 1/B/1526:1528 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_7D80_151 | 1/a/17:18, 1/a/65:67 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_37497.2 | |
| IL_7D80_152 | 1/a/23:28, 1/a/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
| IL_7D80_153 | 1/a/30:32, 1/a/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_7D80_154 | 1/a/33:38, 1/a/44:49 | No text annotation Not in a motif group | homologous IL_7A0S_105 IL_93630.2 | |
| IL_7D80_155 | 1/a/71:79, 1/a/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7D80_026 | Triple sheared | ||
| IL_7D80_036 | Kink-turn | ||
| IL_7D80_064 | Major groove minor groove platform; mini C-loop | ||
| IL_7D80_074 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7D80_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation Not in a motif group | homologous J3_5J7L_036 NA | |
| J3_7D80_002 | 1/A/55:57, 1/A/70:76, 1/A/110:115 | No text annotation Not in a motif group | ||
| J3_7D80_003 | 1/A/682:690, 1/A/772:775, 1/A/791:795 | No text annotation Not in a motif group | ||
| J3_7D80_004 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation Not in a motif group | homologous J3_4WF9_003 NA | |
| J3_7D80_005 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_7D80_006 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_7D80_007 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_7D80_008 | 1/A/2282:2284, 1/A/2384:2397, 1/A/2419:2427 | No text annotation Not in a motif group | ||
| J3_7D80_009 | 1/A/2295:2299, 1/A/2317:2323, 1/A/2332:2337 | No text annotation Not in a motif group | ||
| J3_7D80_010 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation Not in a motif group | ||
| J3_7D80_011 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_7D80_012 | 1/A/2811:2815, 1/A/2831:2836, 1/A/2882:2889 | No text annotation Not in a motif group | ||
| J3_7D80_013 | 1/B/46:47, 1/B/361:370, 1/B/391:395 | No text annotation Not in a motif group | ||
| J3_7D80_014 | 1/B/586:588, 1/B/651:654, 1/B/754:755 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA | |
| J3_7D80_015 | 1/B/826:829, 1/B/857:861, 1/B/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_7D80_016 | 1/B/954:962, 1/B/973:985, 1/B/1220:1226 | No text annotation Not in a motif group | ||
| J3_7D80_017 | 1/B/989:993, 1/B/1045:1047, 1/B/1210:1216 | No text annotation Not in a motif group | ||
| J3_7D80_018 | 1/B/1063:1068, 1/B/1107:1113, 1/B/1187:1193 | No text annotation Not in a motif group | ||
| J3_7D80_019 | 1/B/1073:1075, 1/B/1082:1087, 1/B/1098:1102 | No text annotation Not in a motif group | ||
| J3_7D80_020 | 1/B/1116:1118, 1/B/1155:1158, 1/B/1181:1184 | No text annotation Not in a motif group | ||
| J3_7D80_021 | 1/a/10:16, 1/a/68:71, 1/a/105:110 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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