8CIV Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8CIV_001 | 1/AA/38:45 | No text annotation Not in a motif group | geometric HL_4WF9_006 HL_06192.3 | |
| HL_8CIV_002 | 1/AA/69:74 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.3 | |
| HL_8CIV_003 | 1/AA/90:96 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.8 | |
| HL_8CIV_004 | 1/AA/132:136 | No text annotation Not in a motif group | homologous HL_8C3A_004 HL_75930.1 | |
| HL_8CIV_005 | 1/AA/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_41998.2 | |
| HL_8CIV_006 | 1/AA/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.5 | |
| HL_8CIV_007 | 1/AA/216:224 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.10 | |
| HL_8CIV_008 | 1/AA/278:287 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
| HL_8CIV_009 | 1/AA/303:312 | No text annotation Not in a motif group | homologous HL_8C3A_009 HL_12078.5 | |
| HL_8CIV_010 | 1/AA/357:362 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_85603.1 | |
| HL_8CIV_011 | 1/AA/382:387 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_85603.1 | |
| HL_8CIV_012 | 1/AA/544:548 | No text annotation Not in a motif group | ||
| HL_8CIV_013 | 1/AA/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_85603.1 | |
| HL_8CIV_014 | 1/AA/638:651 | No text annotation Not in a motif group | geometric HL_4WF9_011 HL_70546.2 | |
| HL_8CIV_015 | 1/AA/686:694 | No text annotation Not in a motif group | homologous HL_8C3A_015 HL_03345.1 | |
| HL_8CIV_016 | 1/AA/707:712 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_85603.1 | |
| HL_8CIV_017 | 1/AA/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_85603.1 | |
| HL_8CIV_018 | 1/AA/763:768 | No text annotation Not in a motif group | geometric HL_5TBW_018 HL_34168.3 | |
| HL_8CIV_019 | 1/AA/844:849 | No text annotation Not in a motif group | homologous HL_8C3A_019 HL_85603.1 | |
| HL_8CIV_020 | 1/AA/875:886 | No text annotation Not in a motif group | ||
| HL_8CIV_021 | 1/AA/910:918 | No text annotation Not in a motif group | homologous HL_8C3A_021 HL_33817.1 | |
| HL_8CIV_022 | 1/AA/958:963 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.2 | |
| HL_8CIV_023 | 1/AA/1023:1029 | GNRA Not in a motif group | homologous HL_5TBW_023 HL_85603.1 | |
| HL_8CIV_024 | 1/AA/1076:1083 | No text annotation Not in a motif group | homologous HL_5TBW_024 HL_71554.2 | |
| HL_8CIV_025 | 1/AA/1126:1132 | No text annotation Not in a motif group | homologous HL_8C3A_025 HL_85603.1 | |
| HL_8CIV_026 | 1/AA/1148:1155 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.3 | |
| HL_8CIV_027 | 1/AA/1239:1249 | No text annotation Not in a motif group | homologous HL_8C3A_027 HL_07145.2 | |
| HL_8CIV_028 | 1/AA/1267:1274 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.3 | |
| HL_8CIV_029 | 1/AA/1347:1357 | No text annotation Not in a motif group | geometric HL_4OOG_001 HL_28980.2 | |
| HL_8CIV_030 | 1/AA/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_85603.1 | |
| HL_8CIV_031 | 1/AA/1462:1470 | No text annotation Not in a motif group | homologous HL_8C3A_031 HL_41998.2 | |
| HL_8CIV_032 | 1/AA/1506:1512 | No text annotation Not in a motif group | homologous HL_8C3A_032 HL_46680.2 | |
| HL_8CIV_033 | 1/AA/1544:1549 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_85603.1 | |
| HL_8CIV_034 | 1/AA/1562:1577 | No text annotation Not in a motif group | ||
| HL_8CIV_035 | 1/AA/1599:1608 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.3 | |
| HL_8CIV_036 | 1/AA/1634:1639 | No text annotation Not in a motif group | homologous HL_8C3A_036 HL_85603.1 | |
| HL_8CIV_037 | 1/AA/1680:1688 | No text annotation Not in a motif group | homologous HL_8C3A_037 HL_84085.3 | |
| HL_8CIV_038 | 1/AA/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_86373.3 | |
| HL_8CIV_039 | 1/AA/1760:1765 | Other HL Not in a motif group | homologous HL_5TBW_039 HL_91104.2 | |
| HL_8CIV_040 | 1/AA/1792:1796 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_38927.6 | |
| HL_8CIV_041 | 1/AA/1844:1851 | No text annotation Not in a motif group | homologous HL_8C3A_041 HL_64430.3 | |
| HL_8CIV_042 | 1/AA/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_85603.1 | |
| HL_8CIV_043 | 1/AA/1923:1928 | UNCG Not in a motif group | geometric HL_4V9F_044 HL_29960.1 | |
| HL_8CIV_044 | 1/AA/1952:2094 | No text annotation Not in a motif group | ||
| HL_8CIV_045 | 1/AA/2110:2114 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_86735.2 | |
| HL_8CIV_046 | 1/AA/2135:2145 | No text annotation Not in a motif group | homologous HL_8C3A_046 HL_43613.6 | |
| HL_8CIV_047 | 1/AA/2164:2170 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_85603.1 | |
| HL_8CIV_048 | 1/AA/2219:2226 | No text annotation Not in a motif group | geometric HL_4WF9_041 HL_65167.1 | |
| HL_8CIV_049 | 1/AA/2253:2263 | No text annotation Not in a motif group | homologous HL_8C3A_049 HL_71924.2 | |
| HL_8CIV_050 | 1/AA/2292:2300 | No text annotation Not in a motif group | homologous HL_8C3A_050 HL_51824.2 | |
| HL_8CIV_051 | 1/AA/2369:2378 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.7 | |
| HL_8CIV_052 | 1/AA/2469:2476 | No text annotation Not in a motif group | homologous HL_8C3A_052 HL_70228.1 | |
| HL_8CIV_053 | 1/AA/2533:2546 | No text annotation Not in a motif group | ||
| HL_8CIV_054 | 1/AA/2568:2573 | UNCG Not in a motif group | geometric HL_5J7L_030 HL_29960.1 | |
| HL_8CIV_055 | 1/AA/2616:2624 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.3 | |
| HL_8CIV_056 | 1/AA/2633:2645 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.7 | |
| HL_8CIV_057 | 1/AA/2673:2681 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_76406.4 | |
| HL_8CIV_058 | 1/AA/2693:2700 | No text annotation Not in a motif group | homologous HL_8C3A_058 HL_12078.5 | |
| HL_8CIV_059 | 1/AA/2723:2733 | No text annotation Not in a motif group | ||
| HL_8CIV_060 | 1/AA/2744:2749 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_85603.1 | |
| HL_8CIV_061 | 1/AA/2776:2784 | No text annotation Not in a motif group | homologous HL_8C3A_061 HL_96598.2 | |
| HL_8CIV_062 | 1/AA/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.3 | |
| HL_8CIV_063 | 1/AA/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_91104.2 | |
| HL_8CIV_064 | 1/AA/2920:2926 | No text annotation Not in a motif group | homologous HL_8C3A_064 HL_22584.1 | |
| HL_8CIV_065 | 1/AA/2963:2968 | No text annotation Not in a motif group | homologous HL_8C3A_065 HL_85603.1 | |
| HL_8CIV_066 | 1/AA/3025:3030 | GNRA Not in a motif group | homologous HL_5TBW_065 HL_85603.1 | |
| HL_8CIV_067 | 1/AA/3068:3073 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.2 | |
| HL_8CIV_068 | 1/AA/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.8 | |
| HL_8CIV_069 | 1/AA/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_75930.1 | |
| HL_8CIV_070 | 1/AA/3240:3247 | No text annotation Not in a motif group | ||
| HL_8CIV_071 | 1/AA/3303:3311 | No text annotation Not in a motif group | homologous HL_8C3A_071 HL_64690.2 | |
| HL_8CIV_072 | 1/AA/3350:3353 | No text annotation Not in a motif group | homologous HL_8C3A_072 HL_69858.1 | |
| HL_8CIV_073 | 1/BB/36:41 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_83767.1 | |
| HL_8CIV_074 | 1/BB/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_85603.1 | |
| HL_8CIV_075 | 1/Bb/13:22 | No text annotation Not in a motif group | ||
| HL_8CIV_076 | 1/Bb/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_6UFG_007 HL_53597.4 | |
| HL_8CIV_077 | 1/Bb/51:63 | No text annotation Not in a motif group | ||
| HL_8CIV_078 | 1/CC/69:89 | No text annotation Not in a motif group | ||
| HL_8CIV_079 | 1/CC/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_83767.1 | |
| HL_8CIV_080 | 1/CC/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_02129.1 | |
| HL_8CIV_081 | 1/Cc/13:23 | No text annotation Not in a motif group | homologous HL_3KFU_004 NA | |
| HL_8CIV_082 | 1/Cc/32:40 | tRNA anticodon loop Not in a motif group | homologous HL_5IBB_210 HL_53597.4 | |
| HL_8CIV_083 | 1/Cc/53:63 | No text annotation Not in a motif group | homologous HL_5EL4_223 NA | |
| HL_8CIV_084 | 1/c/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_8CIV_085 | 1/c/70:81 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_8CIV_086 | 1/c/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.6 | |
| HL_8CIV_087 | 1/c/185:200 | No text annotation Not in a motif group | ||
| HL_8CIV_088 | 1/c/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_56241.2 | |
| HL_8CIV_089 | 1/c/276:279 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_75930.1 | |
| HL_8CIV_090 | 1/c/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.3 | |
| HL_8CIV_091 | 1/c/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_8CIV_092 | 1/c/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_8CIV_093 | 1/c/411:422 | No text annotation Not in a motif group | ||
| HL_8CIV_094 | 1/c/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_26380.1 | |
| HL_8CIV_095 | 1/c/520:532 | No text annotation Not in a motif group | homologous HL_4V88_199 HL_06285.3 | |
| HL_8CIV_096 | 1/c/569:574 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.3 | |
| HL_8CIV_097 | 1/c/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_8CIV_098 | 1/c/777:783 | No text annotation Not in a motif group | homologous HL_4V88_204 HL_97896.2 | |
| HL_8CIV_099 | 1/c/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.2 | |
| HL_8CIV_100 | 1/c/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.3 | |
| HL_8CIV_101 | 1/c/996:1008 | No text annotation Not in a motif group | ||
| HL_8CIV_102 | 1/c/1055:1064 | No text annotation Not in a motif group | ||
| HL_8CIV_103 | 1/c/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_85603.1 | |
| HL_8CIV_104 | 1/c/1120:1127 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_65167.1 | |
| HL_8CIV_105 | 1/c/1188:1197 | No text annotation Not in a motif group | ||
| HL_8CIV_106 | 1/c/1238:1247 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.4 | |
| HL_8CIV_107 | 1/c/1296:1301 | GNRA Not in a motif group | homologous HL_4V88_214 HL_85603.1 | |
| HL_8CIV_108 | 1/c/1309:1316 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_8CIV_109 | 1/c/1359:1364 | No text annotation Not in a motif group | ||
| HL_8CIV_110 | 1/c/1396:1402 | No text annotation Not in a motif group | geometric HL_5J7L_179 HL_85603.1 | |
| HL_8CIV_111 | 1/c/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_85603.1 | |
| HL_8CIV_112 | 1/c/1550:1561 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_75768.1 | |
| HL_8CIV_113 | 1/c/1594:1602 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_75828.1 | |
| HL_8CIV_114 | 1/c/1778:1783 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8CIV_002 | 1/AA/7:8, 1/CC/150:152 | Single bulged C Not in a motif group | geometric IL_5TBW_002 IL_61258.13 | |
| IL_8CIV_003 | 1/AA/13:15, 1/CC/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.17 | |
| IL_8CIV_004 | 1/AA/27:28, 1/AA/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.5 | |
| IL_8CIV_005 | 1/AA/31:38, 1/AA/45:53 | tSH-tHW-tHH-tHS Not in a motif group | homologous IL_5TBW_005 IL_35728.2 | |
| IL_8CIV_006 | 1/AA/82:89, 1/AA/97:103 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_8CIV_007 | 1/AA/123:124, 1/AA/144:149 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
| IL_8CIV_008 | 1/AA/125:127, 1/AA/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_86319.3 | |
| IL_8CIV_009 | 1/AA/163:165, 1/AA/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.5 | |
| IL_8CIV_010 | 1/AA/169:172, 1/AA/247:253 | No text annotation Not in a motif group | ||
| IL_8CIV_011 | 1/AA/172:173, 1/AA/245:247 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.5 | |
| IL_8CIV_012 | 1/AA/177:178, 1/AA/238:241 | Major groove platform Not in a motif group | geometric IL_7A0S_073 IL_27635.4 | |
| IL_8CIV_013 | 1/AA/189:191, 1/AA/204:205 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.17 | |
| IL_8CIV_014 | 1/AA/337:339, 1/CC/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.7 | |
| IL_8CIV_015 | 1/AA/376:379, 1/AA/390:403 | No text annotation Not in a motif group | homologous IL_8C3A_015 IL_60992.7 | |
| IL_8CIV_016 | 1/AA/404:410, 1/CC/13:19 | No text annotation Not in a motif group | homologous IL_8C3A_016 IL_66414.7 | |
| IL_8CIV_017 | 1/AA/429:431, 1/AA/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_70707.3 | |
| IL_8CIV_018 | 1/AA/435:495, 1/AA/618:624 | No text annotation Not in a motif group | ||
| IL_8CIV_019 | 1/AA/512:513, 1/AA/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_37497.7 | |
| IL_8CIV_020 | 1/AA/517:525, 1/AA/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_8CIV_021 | 1/AA/531:538, 1/AA/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_8CIV_022 | 1/AA/542:544, 1/AA/548:549 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.5 | |
| IL_8CIV_023 | 1/AA/668:670, 1/AA/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_86319.3 | |
| IL_8CIV_024 | 1/AA/680:684, 1/AA/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_8CIV_025 | 1/AA/725:728, 1/AA/741:745 | No text annotation Not in a motif group | homologous IL_8C3A_025 IL_07235.2 | |
| IL_8CIV_026 | 1/AA/752:753, 1/AA/779:781 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.7 | |
| IL_8CIV_027 | 1/AA/755:756, 1/AA/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.17 | |
| IL_8CIV_028 | 1/AA/758:763, 1/AA/768:773 | No text annotation Not in a motif group | homologous IL_8C3A_028 IL_19954.2 | |
| IL_8CIV_029 | 1/AA/803:809, 1/AA/931:940 | No text annotation Not in a motif group | ||
| IL_8CIV_030 | 1/AA/826:828, 1/AA/897:899 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_86319.3 | |
| IL_8CIV_031 | 1/AA/828:829, 1/AA/895:897 | Single bulged A Not in a motif group | geometric IL_7A0S_016 IL_37497.7 | |
| IL_8CIV_032 | 1/AA/833:834, 1/AA/859:861 | No text annotation Not in a motif group | homologous IL_8C3A_032 IL_00225.4 | |
| IL_8CIV_033 | 1/AA/834:838, 1/AA/855:859 | Triple sheared Not in a motif group | geometric IL_5J7L_263 IL_56467.9 | |
| IL_8CIV_034 | 1/AA/869:872, 1/AA/888:890 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.3 | |
| IL_8CIV_035 | 1/AA/873:875, 1/AA/886:887 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.17 | |
| IL_8CIV_036 | 1/AA/907:909, 1/AA/919:923 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_033 IL_90991.7 | |
| IL_8CIV_037 | 1/AA/954:956, 1/AA/965:967 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_86319.3 | |
| IL_8CIV_038 | 1/AA/969:970, 1/AA/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.5 | |
| IL_8CIV_039 | 1/AA/977:982, 1/AA/1101:1104 | No text annotation Not in a motif group | ||
| IL_8CIV_040 | 1/AA/983:985, 1/AA/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.4 | |
| IL_8CIV_041 | 1/AA/991:997, 1/AA/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5TBW_038 IL_93830.3 | |
| IL_8CIV_042 | 1/AA/997:998, 1/AA/1050:1052 | Minor groove platform Not in a motif group | geometric IL_6DLR_003 IL_42622.5 | |
| IL_8CIV_043 | 1/AA/999:1004, 1/AA/1046:1049 | No text annotation Not in a motif group | homologous IL_8C3A_043 IL_02509.2 | |
| IL_8CIV_044 | 1/AA/1006:1009, 1/AA/1041:1044 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.4 | |
| IL_8CIV_045 | 1/AA/1009:1011, 1/AA/1039:1041 | No text annotation Not in a motif group | homologous IL_8C3A_045 IL_86319.3 | |
| IL_8CIV_046 | 1/AA/1014:1018, 1/AA/1034:1036 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3KTW_002 IL_43275.2 | |
| IL_8CIV_048 | 1/AA/1069:1071, 1/AA/1087:1089 | No text annotation Not in a motif group | homologous IL_8C3A_047 IL_86319.3 | |
| IL_8CIV_049 | 1/AA/1074:1076, 1/AA/1083:1084 | Single bulged A Not in a motif group | geometric IL_5TBW_045 IL_37497.7 | |
| IL_8CIV_050 | 1/AA/1120:1122, 1/AA/1136:1138 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_86319.3 | |
| IL_8CIV_051 | 1/AA/1123:1126, 1/AA/1132:1135 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_402D_001 IL_30621.4 | |
| IL_8CIV_052 | 1/AA/1167:1171, 1/AA/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.3 | |
| IL_8CIV_053 | 1/AA/1173:1180, 1/AA/1325:1326 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15861.8 | |
| IL_8CIV_054 | 1/AA/1180:1182, 1/AA/1324:1325 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.17 | |
| IL_8CIV_055 | 1/AA/1187:1194, 1/AA/1314:1319 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_27086.1 | |
| IL_8CIV_056 | 1/AA/1194:1205, 1/AA/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_8CIV_057 | 1/AA/1207:1209, 1/AA/1296:1297 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.17 | |
| IL_8CIV_058 | 1/AA/1218:1226, 1/AA/1283:1287 | No text annotation Not in a motif group | homologous IL_8C3A_057 IL_90538.5 | |
| IL_8CIV_059 | 1/AA/1234:1238, 1/AA/1250:1254 | No text annotation Not in a motif group | homologous IL_8C3A_058 IL_30542.3 | |
| IL_8CIV_060 | 1/AA/1262:1266, 1/AA/1275:1277 | Major groove platform with extra cWW Not in a motif group | geometric IL_5D8H_003 IL_05564.3 | |
| IL_8CIV_061 | 1/AA/1376:1378, 1/AA/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.5 | |
| IL_8CIV_062 | 1/AA/1385:1387, 1/AA/1420:1421 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.7 | |
| IL_8CIV_063 | 1/AA/1388:1395, 1/AA/1415:1419 | No text annotation Not in a motif group | homologous IL_8C3A_063 IL_70923.3 | |
| IL_8CIV_064 | 1/AA/1398:1400, 1/AA/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.7 | |
| IL_8CIV_065 | 1/AA/1444:1451, 1/AA/2353:2359 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge Not in a motif group | geometric IL_4V9F_012 IL_59724.1 | |
| IL_8CIV_066 | 1/AA/1500:1505, 1/AA/1513:1516 | No text annotation Not in a motif group | homologous IL_5TBW_062 IL_93630.2 | |
| IL_8CIV_067 | 1/AA/1532:1536, 1/AA/1585:1590 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.3 | |
| IL_8CIV_068 | 1/AA/1561:1562, 1/AA/1577:1579 | Single stack bend Not in a motif group | geometric IL_4V9F_005 IL_76488.5 | |
| IL_8CIV_069 | 1/AA/1618:1621, 1/AA/1824:1826 | No text annotation Not in a motif group | homologous IL_8C3A_070 IL_84698.1 | |
| IL_8CIV_070 | 1/AA/1623:1624, 1/AA/1819:1822 | Multiple bulged bases Not in a motif group | geometric IL_4YAZ_007 IL_76389.1 | |
| IL_8CIV_071 | 1/AA/1627:1631, 1/AA/1811:1816 | No text annotation Not in a motif group | homologous IL_5TBW_066 IL_48431.1 | |
| IL_8CIV_072 | 1/AA/1645:1649, 1/AA/1806:1810 | No text annotation Not in a motif group | homologous IL_8C3A_073 IL_56467.9 | |
| IL_8CIV_073 | 1/AA/1661:1663, 1/AA/1786:1788 | No text annotation Not in a motif group | homologous IL_8C3A_074 IL_86319.3 | |
| IL_8CIV_074 | 1/AA/1669:1670, 1/AA/1778:1780 | Single bulged C Not in a motif group | homologous IL_5TBW_069 IL_61258.13 | |
| IL_8CIV_075 | 1/AA/1670:1671, 1/AA/1776:1778 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.5 | |
| IL_8CIV_076 | 1/AA/1694:1698, 1/AA/1747:1752 | No text annotation Not in a motif group | homologous IL_8C3A_077 IL_69313.1 | |
| IL_8CIV_077 | 1/AA/1702:1707, 1/AA/1737:1743 | No text annotation Not in a motif group | homologous IL_5TBW_072 IL_39753.1 | |
| IL_8CIV_078 | 1/AA/1711:1717, 1/AA/1727:1733 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_8CIV_079 | 1/AA/1883:1889, 1/AA/2346:2349 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_49460.2 | |
| IL_8CIV_080 | 1/AA/1895:1897, 1/AA/2338:2340 | Isolated tWW turn Not in a motif group | geometric IL_4WF9_063 IL_54997.8 | |
| IL_8CIV_081 | 1/AA/1897:1901, 1/AA/2336:2338 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 NA | |
| IL_8CIV_082 | 1/AA/1901:1906, 1/AA/2333:2336 | Intercalated tWH Not in a motif group | geometric IL_5TBW_077 IL_76273.2 | |
| IL_8CIV_083 | 1/AA/1918:1923, 1/AA/1928:1934 | No text annotation Not in a motif group | homologous IL_8C3A_084 IL_65969.3 | |
| IL_8CIV_084 | 1/AA/1940:1942, 1/AA/2106:2108 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_86319.3 | |
| IL_8CIV_085 | 1/AA/1947:1948, 1/AA/2098:2101 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_8CIV_086 | 1/AA/2128:2129, 1/AA/2323:2325 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.7 | |
| IL_8CIV_087 | 1/AA/2156:2161, 1/AA/2173:2180 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_8CIV_088 | 1/AA/2196:2199, 1/AA/2245:2246 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.4 | |
| IL_8CIV_089 | 1/AA/2200:2201, 1/AA/2241:2244 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.3 | |
| IL_8CIV_090 | 1/AA/2204:2206, 1/AA/2237:2238 | No text annotation Not in a motif group | homologous IL_8C3A_091 IL_76488.5 | |
| IL_8CIV_091 | 1/AA/2206:2210, 1/AA/2235:2237 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4WF9_003 IL_65006.1 | |
| IL_8CIV_092 | 1/AA/2211:2217, 1/AA/2228:2234 | No text annotation Not in a motif group | homologous IL_8C3A_093 IL_36973.6 | |
| IL_8CIV_093 | 1/AA/2276:2277, 1/AA/2307:2310 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_089 IL_59677.3 | |
| IL_8CIV_094 | 1/AA/2277:2289, 1/AA/2303:2307 | No text annotation Not in a motif group | ||
| IL_8CIV_095 | 1/AA/2391:2394, 1/AA/2986:2988 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_63450.3 | |
| IL_8CIV_096 | 1/AA/2396:2398, 1/AA/2981:2984 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_54678.5 | |
| IL_8CIV_097 | 1/AA/2409:2411, 1/AA/2811:2812 | Single bulged U Not in a motif group | homologous IL_5TBW_093 IL_83039.17 | |
| IL_8CIV_098 | 1/AA/2412:2413, 1/AA/2807:2810 | No text annotation Not in a motif group | homologous IL_8C3A_099 IL_42622.5 | |
| IL_8CIV_099 | 1/AA/2420:2422, 1/AA/2608:2610 | Stack and bulge Not in a motif group | geometric IL_2O3X_001 IL_64417.2 | |
| IL_8CIV_100 | 1/AA/2423:2425, 1/AA/2604:2607 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.8 | |
| IL_8CIV_101 | 1/AA/2444:2448, 1/AA/2499:2503 | No text annotation Not in a motif group | ||
| IL_8CIV_102 | 1/AA/2448:2451, 1/AA/2496:2499 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4EYA_010 IL_30621.4 | |
| IL_8CIV_103 | 1/AA/2452:2459, 1/AA/2487:2495 | No text annotation Not in a motif group | ||
| IL_8CIV_104 | 1/AA/2459:2469, 1/AA/2476:2487 | No text annotation Not in a motif group | ||
| IL_8CIV_105 | 1/AA/2520:2526, 1/AA/2584:2587 | No text annotation Not in a motif group | homologous IL_8C3A_106 IL_74114.1 | |
| IL_8CIV_106 | 1/AA/2614:2615, 1/AA/2625:2627 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_37497.7 | |
| IL_8CIV_107 | 1/AA/2666:2668, 1/AA/2686:2690 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_5TBW_099 IL_38958.8 | |
| IL_8CIV_108 | 1/AA/2714:2716, 1/AA/2740:2741 | Single bulged A Not in a motif group | geometric IL_5WWT_001 IL_37497.7 | |
| IL_8CIV_109 | 1/AA/2718:2721, 1/AA/2735:2738 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.4 | |
| IL_8CIV_110 | 1/AA/2766:2768, 1/AA/2790:2792 | UU cWW Not in a motif group | geometric IL_3SZX_003 IL_86319.3 | |
| IL_8CIV_111 | 1/AA/2770:2773, 1/AA/2787:2788 | No text annotation Not in a motif group | homologous IL_8C3A_110 IL_76488.5 | |
| IL_8CIV_112 | 1/AA/2823:2824, 1/AA/2865:2867 | Major groove platform Not in a motif group | geometric IL_5TBW_102 IL_27635.4 | |
| IL_8CIV_113 | 1/AA/2824:2826, 1/AA/2863:2865 | No text annotation Not in a motif group | homologous IL_5TBW_103 IL_86319.3 | |
| IL_8CIV_114 | 1/AA/2826:2828, 1/AA/2862:2863 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.3 | |
| IL_8CIV_115 | 1/AA/2828:2830, 1/AA/2858:2862 | No text annotation Not in a motif group | homologous IL_5TBW_105 IL_92788.3 | |
| IL_8CIV_116 | 1/AA/2835:2839, 1/AA/2849:2853 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_8CIV_117 | 1/AA/2876:2877, 1/AA/2949:2951 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.3 | |
| IL_8CIV_118 | 1/AA/2877:2879, 1/AA/2947:2949 | No text annotation Not in a motif group | geometric IL_2ZNI_001 IL_86319.3 | |
| IL_8CIV_119 | 1/AA/2879:2881, 1/AA/2943:2947 | No text annotation Not in a motif group | homologous IL_8C3A_116 IL_90933.3 | |
| IL_8CIV_120 | 1/AA/2881:2882, 1/AA/2940:2943 | No text annotation Not in a motif group | homologous IL_8C3A_117 IL_71530.3 | |
| IL_8CIV_121 | 1/AA/2889:2891, 1/AA/2912:2914 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_86319.3 | |
| IL_8CIV_122 | 1/AA/2891:2892, 1/AA/2909:2912 | Minor groove platform with intercalation Not in a motif group | geometric IL_5TBW_111 IL_95601.4 | |
| IL_8CIV_123 | 1/AA/2918:2920, 1/AA/2926:2928 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_86319.3 | |
| IL_8CIV_124 | 1/AA/2958:2960, 1/AA/2972:2974 | No text annotation Not in a motif group | homologous IL_8C3A_121 IL_52767.5 | |
| IL_8CIV_125 | 1/AA/2960:2961, 1/AA/2970:2972 | Single bulged A Not in a motif group | geometric IL_7RQB_101 NA | |
| IL_8CIV_126 | 1/AA/3004:3007, 1/AA/3139:3144 | No text annotation Not in a motif group | homologous IL_8C3A_123 IL_09705.11 | |
| IL_8CIV_127 | 1/AA/3012:3014, 1/AA/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_86319.3 | |
| IL_8CIV_128 | 1/AA/3018:3025, 1/AA/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.8 | |
| IL_8CIV_129 | 1/AA/3047:3051, 1/AA/3091:3094 | No text annotation Not in a motif group | homologous IL_8C3A_126 IL_37712.2 | |
| IL_8CIV_130 | 1/AA/3054:3059, 1/AA/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.2 | |
| IL_8CIV_131 | 1/AA/3063:3064, 1/AA/3077:3080 | No text annotation Not in a motif group | homologous IL_8C3A_128 IL_71530.3 | |
| IL_8CIV_132 | 1/AA/3103:3107, 1/AA/3127:3131 | No text annotation Not in a motif group | homologous IL_8C3A_129 IL_89002.3 | |
| IL_8CIV_133 | 1/AA/3164:3166, 1/AA/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_86319.3 | |
| IL_8CIV_134 | 1/AA/3168:3170, 1/AA/3280:3282 | No text annotation Not in a motif group | homologous IL_5TBW_122 IL_86319.3 | |
| IL_8CIV_135 | 1/AA/3177:3179, 1/AA/3210:3211 | Single bulged A Not in a motif group | homologous IL_5TBW_123 IL_37497.7 | |
| IL_8CIV_136 | 1/AA/3179:3188, 1/AA/3204:3210 | No text annotation Not in a motif group | geometric IL_5TBW_124 IL_15174.1 | |
| IL_8CIV_137 | 1/AA/3193:3194, 1/AA/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.17 | |
| IL_8CIV_138 | 1/AA/3225:3229, 1/AA/3258:3260 | No text annotation Not in a motif group | homologous IL_8C3A_133 IL_19389.6 | |
| IL_8CIV_139 | 1/AA/3233:3235, 1/AA/3252:3254 | No text annotation Not in a motif group | geometric IL_5TBW_127 IL_86319.3 | |
| IL_8CIV_140 | 1/AA/3235:3238, 1/AA/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_128 IL_30621.4 | |
| IL_8CIV_141 | 1/AA/3300:3303, 1/AA/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.4 | |
| IL_8CIV_142 | 1/AA/3318:3320, 1/AA/3387:3388 | Single bulged U Not in a motif group | geometric IL_5TBW_130 IL_83039.17 | |
| IL_8CIV_143 | 1/AA/3324:3325, 1/AA/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.17 | |
| IL_8CIV_144 | 1/AA/3328:3330, 1/AA/3373:3378 | No text annotation Not in a motif group | homologous IL_8C3A_138 IL_90933.3 | |
| IL_8CIV_145 | 1/AA/3332:3337, 1/AA/3367:3371 | No text annotation Not in a motif group | homologous IL_8C3A_139 IL_83162.6 | |
| IL_8CIV_146 | 1/AA/3340:3342, 1/AA/3363:3364 | No text annotation Not in a motif group | homologous IL_8C3A_140 IL_83039.17 | |
| IL_8CIV_147 | 1/AA/3342:3345, 1/AA/3360:3363 | Double sheared Not in a motif group | geometric IL_4V9F_100 IL_09705.11 | |
| IL_8CIV_148 | 1/BB/15:16, 1/BB/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.7 | |
| IL_8CIV_149 | 1/BB/21:27, 1/BB/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_8CIV_150 | 1/BB/28:29, 1/BB/49:52 | Minor groove platform Not in a motif group | geometric IL_5TBW_374 IL_63797.2 | |
| IL_8CIV_151 | 1/BB/29:30, 1/BB/47:49 | Single stack bend Not in a motif group | homologous IL_5TBW_375 IL_76488.5 | |
| IL_8CIV_152 | 1/BB/32:36, 1/BB/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_5TBW_376 IL_58103.7 | |
| IL_8CIV_153 | 1/BB/72:80, 1/BB/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.8 | |
| IL_8CIV_154 | 1/BB/84:87, 1/BB/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_86319.3 | |
| IL_8CIV_155 | 1/CC/44:64, 1/CC/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_44998.1 | |
| IL_8CIV_156 | 1/CC/64:66, 1/CC/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_145 IL_43275.2 | |
| IL_8CIV_157 | 1/CC/68:69, 1/CC/89:91 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.17 | |
| IL_8CIV_158 | 1/c/24:26, 1/c/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.13 | |
| IL_8CIV_159 | 1/c/27:29, 1/c/597:599 | UU cWW Not in a motif group | geometric IL_3SZX_003 IL_86319.3 | |
| IL_8CIV_160 | 1/c/35:37, 1/c/471:473 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_70707.3 | |
| IL_8CIV_161 | 1/c/37:41, 1/c/466:471 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_8CIV_162 | 1/c/42:48, 1/c/431:433 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_8CIV_163 | 1/c/50:52, 1/c/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_80097.2 | |
| IL_8CIV_164 | 1/c/58:63, 1/c/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_8CIV_165 | 1/c/64:69, 1/c/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.2 | |
| IL_8CIV_166 | 1/c/109:112, 1/c/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.4 | |
| IL_8CIV_167 | 1/c/113:116, 1/c/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.2 | |
| IL_8CIV_168 | 1/c/117:122, 1/c/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_8CIV_169 | 1/c/142:149, 1/c/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_8CIV_170 | 1/c/150:152, 1/c/162:164 | Isolated cWH basepair Not in a motif group | geometric IL_6RA4_002 IL_70707.3 | |
| IL_8CIV_171 | 1/c/204:206, 1/c/259:263 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V88_397 IL_05564.3 | |
| IL_8CIV_172 | 1/c/206:208, 1/c/257:259 | No text annotation Not in a motif group | geometric IL_4V88_398 IL_86319.3 | |
| IL_8CIV_173 | 1/c/213:243, 1/c/250:252 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_082 NA | |
| IL_8CIV_174 | 1/c/270:273, 1/c/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_8CIV_175 | 1/c/275:276, 1/c/279:281 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.17 | |
| IL_8CIV_176 | 1/c/311:316, 1/c/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.3 | |
| IL_8CIV_177 | 1/c/318:323, 1/c/345:346 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_8CIV_178 | 1/c/363:365, 1/c/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_8CIV_179 | 1/c/389:391, 1/c/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_70707.3 | |
| IL_8CIV_180 | 1/c/439:441, 1/c/463:464 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.17 | |
| IL_8CIV_181 | 1/c/443:447, 1/c/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_8CIV_182 | 1/c/447:448, 1/c/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.4 | |
| IL_8CIV_183 | 1/c/481:483, 1/c/504:507 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_43275.2 | |
| IL_8CIV_184 | 1/c/514:516, 1/c/536:543 | No text annotation Not in a motif group | homologous IL_8C3A_420 IL_55023.1 | |
| IL_8CIV_185 | 1/c/516:518, 1/c/533:536 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_411 IL_46796.2 | |
| IL_8CIV_186 | 1/c/518:520, 1/c/532:533 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_80097.2 | |
| IL_8CIV_187 | 1/c/550:557, 1/c/587:588 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.8 | |
| IL_8CIV_188 | 1/c/557:559, 1/c/586:587 | Single bulged U Not in a motif group | homologous IL_4V88_414 IL_83039.17 | |
| IL_8CIV_189 | 1/c/561:568, 1/c/575:584 | No text annotation Not in a motif group | ||
| IL_8CIV_190 | 1/c/616:622, 1/c/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_38186.1 | |
| IL_8CIV_191 | 1/c/624:626, 1/c/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_86319.3 | |
| IL_8CIV_192 | 1/c/627:631, 1/c/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.2 | |
| IL_8CIV_193 | 1/c/641:643, 1/c/691:693 | Isolated cWH basepair Not in a motif group | geometric IL_4V88_453 IL_70707.3 | |
| IL_8CIV_194 | 1/c/646:648, 1/c/686:688 | No text annotation Not in a motif group | homologous IL_4V88_419 IL_86319.3 | |
| IL_8CIV_195 | 1/c/746:747, 1/c/802:805 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.9 | |
| IL_8CIV_196 | 1/c/748:750, 1/c/799:801 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_86319.3 | |
| IL_8CIV_197 | 1/c/751:759, 1/c/791:798 | No text annotation Not in a motif group | ||
| IL_8CIV_198 | 1/c/819:822, 1/c/850:852 | No text annotation Not in a motif group | homologous IL_4V88_426 IL_86319.3 | |
| IL_8CIV_199 | 1/c/865:866, 1/c/962:965 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.3 | |
| IL_8CIV_200 | 1/c/868:870, 1/c/957:960 | No text annotation Not in a motif group | geometric IL_5UNE_004 IL_86319.3 | |
| IL_8CIV_201 | 1/c/871:874, 1/c/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.4 | |
| IL_8CIV_202 | 1/c/874:878, 1/c/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.4 | |
| IL_8CIV_203 | 1/c/885:888, 1/c/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.4 | |
| IL_8CIV_204 | 1/c/893:899, 1/c/910:919 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_8CIV_205 | 1/c/985:990, 1/c/1014:1016 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_8CIV_206 | 1/c/990:994, 1/c/1010:1014 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_436 IL_17136.2 | |
| IL_8CIV_207 | 1/c/1034:1036, 1/c/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_8CIV_208 | 1/c/1041:1044, 1/c/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.4 | |
| IL_8CIV_209 | 1/c/1051:1053, 1/c/1066:1067 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.17 | |
| IL_8CIV_210 | 1/c/1111:1118, 1/c/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_8CIV_211 | 1/c/1146:1147, 1/c/1630:1632 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.7 | |
| IL_8CIV_212 | 1/c/1149:1151, 1/c/1627:1628 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.4 | |
| IL_8CIV_213 | 1/c/1157:1160, 1/c/1617:1621 | C-loop Not in a motif group | geometric IL_1KOG_007 IL_75255.1 | |
| IL_8CIV_214 | 1/c/1173:1175, 1/c/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_86319.3 | |
| IL_8CIV_215 | 1/c/1178:1179, 1/c/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.5 | |
| IL_8CIV_216 | 1/c/1213:1215, 1/c/1448:1450 | Isolated cWH basepair Not in a motif group | geometric IL_3FOZ_001 IL_70707.3 | |
| IL_8CIV_217 | 1/c/1224:1233, 1/c/1252:1259 | No text annotation Not in a motif group | ||
| IL_8CIV_218 | 1/c/1234:1236, 1/c/1249:1251 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_27844.2 | |
| IL_8CIV_219 | 1/c/1268:1270, 1/c/1440:1441 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.17 | |
| IL_8CIV_220 | 1/c/1272:1276, 1/c/1436:1438 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
| IL_8CIV_221 | 1/c/1276:1278, 1/c/1430:1436 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.3 | |
| IL_8CIV_222 | 1/c/1280:1281, 1/c/1426:1428 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.7 | |
| IL_8CIV_223 | 1/c/1290:1292, 1/c/1323:1325 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_70707.3 | |
| IL_8CIV_224 | 1/c/1306:1308, 1/c/1317:1318 | Minor groove platform Not in a motif group | homologous IL_4V88_454 IL_80097.2 | |
| IL_8CIV_225 | 1/c/1339:1342, 1/c/1383:1385 | No text annotation Not in a motif group | homologous IL_4V88_455 IL_27844.2 | |
| IL_8CIV_226 | 1/c/1345:1348, 1/c/1377:1380 | Minor groove platform Not in a motif group | homologous IL_4V88_456 IL_76458.1 | |
| IL_8CIV_227 | 1/c/1352:1358, 1/c/1365:1373 | No text annotation Not in a motif group | ||
| IL_8CIV_228 | 1/c/1389:1391, 1/c/1407:1412 | No text annotation Not in a motif group | homologous IL_8C3A_465 IL_58032.1 | |
| IL_8CIV_230 | 1/c/1480:1487, 1/c/1519:1527 | No text annotation Not in a motif group | geometric IL_4V88_459 IL_10447.1 | |
| IL_8CIV_231 | 1/c/1488:1494, 1/c/1513:1518 | No text annotation Not in a motif group | homologous IL_4V88_460 IL_75461.4 | |
| IL_8CIV_232 | 1/c/1495:1498, 1/c/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.4 | |
| IL_8CIV_233 | 1/c/1540:1545, 1/c/1566:1571 | No text annotation Not in a motif group | homologous IL_4V88_462 IL_19954.2 | |
| IL_8CIV_234 | 1/c/1636:1638, 1/c/1764:1767 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_8CIV_235 | 1/c/1638:1641, 1/c/1760:1764 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_8CIV_236 | 1/c/1642:1644, 1/c/1757:1759 | No text annotation Not in a motif group | homologous IL_4V88_465 IL_86319.3 | |
| IL_8CIV_237 | 1/c/1644:1647, 1/c/1753:1757 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.4 | |
| IL_8CIV_238 | 1/c/1650:1652, 1/c/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_86319.3 | |
| IL_8CIV_239 | 1/c/1653:1656, 1/c/1744:1747 | Double sheared Not in a motif group | geometric IL_4V88_468 IL_09705.11 | |
| IL_8CIV_240 | 1/c/1656:1658, 1/c/1743:1744 | Single bulged U Not in a motif group | homologous IL_4V88_469 IL_83039.17 | |
| IL_8CIV_241 | 1/c/1665:1667, 1/c/1734:1736 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_70707.3 | |
| IL_8CIV_242 | 1/c/1669:1672, 1/c/1729:1732 | Double sheared Not in a motif group | geometric IL_4V88_471 IL_09705.11 | |
| IL_8CIV_243 | 1/c/1672:1674, 1/c/1727:1729 | No text annotation Not in a motif group | homologous IL_4V88_472 IL_86319.3 | |
| IL_8CIV_244 | 1/c/1675:1678, 1/c/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.4 | |
| IL_8CIV_245 | 1/c/1678:1682, 1/c/1719:1723 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.9 | |
| IL_8CIV_246 | 1/c/1772:1774, 1/c/1787:1789 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8CIV_001 | No text annotation | ||
| IL_8CIV_047 | No text annotation | ||
| IL_8CIV_229 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8CIV_001 | 1/AA/113:123, 1/AA/149:158, 1/AA/263:267 | No text annotation Not in a motif group | ||
| J3_8CIV_002 | 1/AA/814:820, 1/AA/905:907, 1/AA/923:926 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_8CIV_003 | 1/AA/829:831, 1/AA/863:868, 1/AA/891:895 | No text annotation Not in a motif group | ||
| J3_8CIV_004 | 1/AA/1230:1232, 1/AA/1256:1262, 1/AA/1277:1279 | No text annotation Not in a motif group | homologous J3_5TBW_007 NA | |
| J3_8CIV_005 | 1/AA/1479:1485, 1/AA/1857:1859, 1/AA/1871:1874 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_8CIV_006 | 1/AA/1488:1491, 1/AA/1837:1843, 1/AA/1852:1854 | No text annotation Not in a motif group | homologous J3_8C3A_007 NA | |
| J3_8CIV_007 | 1/AA/2432:2435, 1/AA/2512:2517, 1/AA/2590:2597 | No text annotation Not in a motif group | homologous J3_8C3A_008 NA | |
| J3_8CIV_008 | 1/AA/2529:2532, 1/AA/2547:2563, 1/AA/2578:2581 | No text annotation Not in a motif group | ||
| J3_8CIV_009 | 1/AA/2651:2653, 1/AA/2754:2766, 1/AA/2792:2798 | No text annotation Not in a motif group | ||
| J3_8CIV_010 | 1/AA/2664:2666, 1/AA/2690:2692, 1/AA/2701:2706 | No text annotation Not in a motif group | homologous J3_8C3A_010 NA | |
| J3_8CIV_011 | 1/AA/2886:2889, 1/AA/2914:2916, 1/AA/2930:2936 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_8CIV_012 | 1/AA/3298:3300, 1/AA/3314:3318, 1/AA/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_8CIV_013 | 1/c/760:763, 1/c/773:775, 1/c/785:790 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_8CIV_014 | 1/c/881:884, 1/c/928:936, 1/c/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_8CIV_015 | 1/c/1037:1039, 1/c/1079:1083, 1/c/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_8CIV_016 | 1/c/1161:1164, 1/c/1581:1587, 1/c/1609:1616 | No text annotation Not in a motif group | ||
| J3_8CIV_017 | 1/c/1168:1171, 1/c/1468:1470, 1/c/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_8CIV_018 | 1/c/1180:1187, 1/c/1198:1209, 1/c/1454:1458 | No text annotation Not in a motif group | ||
| J3_8CIV_019 | 1/c/1215:1222, 1/c/1261:1267, 1/c/1442:1448 | No text annotation Not in a motif group | ||
| J3_8CIV_020 | 1/c/1283:1288, 1/c/1327:1332, 1/c/1419:1424 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_8CIV_021 | 1/c/1336:1338, 1/c/1386:1389, 1/c/1412:1415 | No text annotation Not in a motif group | homologous J3_8C3A_043 NA | |
| J3_8CIV_022 | 1/c/1470:1474, 1/c/1533:1540, 1/c/1571:1574 | No text annotation Not in a motif group | homologous J3_8C3A_044 NA |
Problematic loops
No problematic loops
Coloring options: