6Q97 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6Q97_001 | 1/1/58:69 | No text annotation Not in a motif group | geometric HL_4V83_139 HL_53597.2 | |
| HL_6Q97_002 | 1/1/85:97 | No text annotation Not in a motif group | ||
| HL_6Q97_003 | 1/1/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_6Q97_004 | 1/1/135:144 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_52841.1 | |
| HL_6Q97_005 | 1/1/155:171 | No text annotation Not in a motif group | ||
| HL_6Q97_006 | 1/1/194:201 | No text annotation Not in a motif group | homologous HL_7A0S_006 HL_06192.2 | |
| HL_6Q97_007 | 1/1/224:231 | No text annotation Not in a motif group | geometric HL_3SKL_006 HL_47100.1 | |
| HL_6Q97_008 | 1/1/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_6Q97_009 | 1/1/305:312 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_6Q97_010 | 1/1/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_6Q97_011 | 1/1/378:396 | No text annotation Not in a motif group | ||
| HL_6Q97_012 | 1/1/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.1 | |
| HL_6Q97_013 | 1/1/462:468 | No text annotation Not in a motif group | ||
| HL_6Q97_014 | 1/1/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
| HL_6Q97_015 | 1/1/542:551 | No text annotation Not in a motif group | ||
| HL_6Q97_016 | 1/1/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_150 HL_89380.2 | |
| HL_6Q97_017 | 1/1/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
| HL_6Q97_018 | 1/1/629:634 | No text annotation Not in a motif group | homologous HL_7A0S_020 HL_42097.1 | |
| HL_6Q97_019 | 1/1/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_77805.2 | |
| HL_6Q97_020 | 1/1/710:721 | No text annotation Not in a motif group | ||
| HL_6Q97_021 | 1/1/744:753 | No text annotation Not in a motif group | homologous HL_5J7L_155 NA | |
| HL_6Q97_022 | 1/1/779:785 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_74322.1 | |
| HL_6Q97_023 | 1/1/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_6Q97_024 | 1/1/885:891 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_56691.2 | |
| HL_6Q97_025 | 1/1/953:964 | No text annotation Not in a motif group | ||
| HL_6Q97_026 | 1/1/977:986 | No text annotation Not in a motif group | ||
| HL_6Q97_027 | 1/1/1059:1079 | No text annotation Not in a motif group | ||
| HL_6Q97_028 | 1/1/1087:1102 | No text annotation Not in a motif group | homologous HL_5J7L_162 HL_04775.1 | |
| HL_6Q97_029 | 1/1/1171:1178 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_6Q97_030 | 1/1/1222:1227 | No text annotation Not in a motif group | homologous HL_7A0S_031 HL_87030.2 | |
| HL_6Q97_031 | 1/1/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_6Q97_032 | 1/1/1324:1330 | No text annotation Not in a motif group | geometric HL_5J7L_166 HL_46680.1 | |
| HL_6Q97_033 | 1/1/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_6Q97_034 | 1/1/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_6Q97_035 | 1/1/1451:1459 | No text annotation Not in a motif group | geometric HL_5J7L_169 HL_53837.1 | |
| HL_6Q97_036 | 1/1/1489:1500 | No text annotation Not in a motif group | ||
| HL_6Q97_037 | 1/1/1533:1538 | No text annotation Not in a motif group | ||
| HL_6Q97_038 | 1/1/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_6Q97_039 | 1/1/1612:1619 | No text annotation Not in a motif group | ||
| HL_6Q97_040 | 1/1/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
| HL_6Q97_041 | 1/1/1691:1696 | UNCG Not in a motif group | geometric HL_4WF9_040 HL_03562.2 | |
| HL_6Q97_042 | 1/1/1726:1734 | No text annotation Not in a motif group | ||
| HL_6Q97_043 | 1/1/1752:1756 | No text annotation Not in a motif group | homologous HL_4WF9_042 HL_76539.2 | |
| HL_6Q97_044 | 1/1/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_6Q97_045 | 1/1/1806:1811 | No text annotation Not in a motif group | geometric HL_5J7L_179 HL_42097.1 | |
| HL_6Q97_046 | 1/1/1868:1873 | Other HL Not in a motif group | homologous HL_5J7L_180 HL_42097.1 | |
| HL_6Q97_047 | 1/1/1909:1922 | No text annotation Not in a motif group | ||
| HL_6Q97_048 | 1/1/1949:1957 | No text annotation Not in a motif group | homologous HL_4WF9_046 HL_51824.1 | |
| HL_6Q97_049 | 1/1/1992:1996 | No text annotation Not in a motif group | ||
| HL_6Q97_050 | 1/1/2027:2036 | No text annotation Not in a motif group | ||
| HL_6Q97_051 | 1/1/2138:2153 | No text annotation Not in a motif group | ||
| HL_6Q97_052 | 1/1/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_6Q97_053 | 1/1/2246:2258 | No text annotation Not in a motif group | ||
| HL_6Q97_054 | 1/1/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
| HL_6Q97_055 | 1/1/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_6Q97_056 | 1/1/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_6Q97_057 | 1/1/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_6Q97_058 | 1/1/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_6Q97_059 | 1/1/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_6Q97_060 | 1/1/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_6Q97_061 | 1/1/2527:2536 | tRNA anticodon loop Not in a motif group | geometric HL_3W3S_002 HL_53597.2 | |
| HL_6Q97_062 | 1/1/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_6Q97_063 | 1/1/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_6Q97_064 | 1/1/2658:2663 | GNRA Not in a motif group | geometric HL_5B2T_003 HL_42097.1 | |
| HL_6Q97_065 | 1/1/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_6Q97_066 | 1/1/2745:2759 | No text annotation Not in a motif group | homologous HL_4WF9_062 HL_56677.7 | |
| HL_6Q97_067 | 1/1/2796:2799 | No text annotation Not in a motif group | geometric HL_5U30_001 HL_53837.1 | |
| HL_6Q97_068 | 1/1/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_6Q97_069 | 1/1/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 | |
| HL_6Q97_070 | 1/2/11:23 | No text annotation Not in a motif group | ||
| HL_6Q97_071 | 1/2/78:92 | No text annotation Not in a motif group | ||
| HL_6Q97_072 | 1/2/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_6Q97_073 | 1/2/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_6Q97_074 | 1/2/207:212 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_6Q97_075 | 1/2/258:268 | No text annotation Not in a motif group | ||
| HL_6Q97_076 | 1/2/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_6Q97_077 | 1/2/322:332 | No text annotation Not in a motif group | ||
| HL_6Q97_078 | 1/2/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_6Q97_079 | 1/2/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_6Q97_080 | 1/2/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_6Q97_081 | 1/2/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.2 | |
| HL_6Q97_082 | 1/2/521:528 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6Q97_083 | 1/2/617:623 | No text annotation Not in a motif group | homologous HL_6CZR_085 HL_26881.1 | |
| HL_6Q97_084 | 1/2/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
| HL_6Q97_085 | 1/2/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_6Q97_086 | 1/2/785:797 | No text annotation Not in a motif group | ||
| HL_6Q97_087 | 1/2/840:846 | No text annotation Not in a motif group | ||
| HL_6Q97_088 | 1/2/897:903 | No text annotation Not in a motif group | geometric HL_4WSM_210 HL_59445.1 | |
| HL_6Q97_089 | 1/2/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
| HL_6Q97_090 | 1/2/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_6Q97_091 | 1/2/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_6Q97_092 | 1/2/1089:1096 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_71554.2 | |
| HL_6Q97_093 | 1/2/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_6Q97_094 | 1/2/1165:1171 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_90617.2 | |
| HL_6Q97_095 | 1/2/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_6Q97_096 | 1/2/1314:1323 | No text annotation Not in a motif group | homologous HL_6CZR_100 HL_89380.2 | |
| HL_6Q97_097 | 1/2/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_6Q97_098 | 1/2/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_6Q97_099 | 1/2/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_6Q97_100 | 1/3/38:44 | No text annotation Not in a motif group | geometric HL_7RQB_070 HL_87939.1 | |
| HL_6Q97_101 | 1/3/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
| HL_6Q97_102 | 1/4/51:65 | No text annotation Not in a motif group | ||
| HL_6Q97_103 | 1/4/116:128 | No text annotation Not in a motif group | ||
| HL_6Q97_104 | 1/4/152:163 | No text annotation Not in a motif group | ||
| HL_6Q97_105 | 1/4/253:278 | No text annotation Not in a motif group | ||
| HL_6Q97_106 | 1/4/340:348 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V8Q_110 HL_71309.1 | |
| HL_6Q97_107 | 1/7/13:23 | No text annotation Not in a motif group | homologous HL_5UD5_001 HL_09136.1 | |
| HL_6Q97_108 | 1/7/32:40 | tRNA anticodon loop Not in a motif group | homologous HL_4WT8_216 HL_53597.2 | |
| HL_6Q97_109 | 1/7/54:62 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_3WFS_003 HL_71309.1 | |
| HL_6Q97_110 | 1/8/30:42 | No text annotation Not in a motif group | homologous HL_2BTE_002 NA | |
| HL_6Q97_111 | 1/8/54:62 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_3WFS_003 HL_71309.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6Q97_001 | 1/1/24:30, 1/1/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7A0S_001 IL_66414.6 | |
| IL_6Q97_002 | 1/1/35:38, 1/1/441:445 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_003 IL_30621.2 | |
| IL_6Q97_003 | 1/1/42:44, 1/1/434:437 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4WF9_003 IL_65006.1 | |
| IL_6Q97_004 | 1/1/79:85, 1/1/97:107 | No text annotation Not in a motif group | ||
| IL_6Q97_005 | 1/1/188:194, 1/1/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
| IL_6Q97_006 | 1/1/239:245, 1/1/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_6Q97_007 | 1/1/269:271, 1/1/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_6Q97_008 | 1/1/293:295, 1/1/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_6Q97_009 | 1/1/481:484, 1/1/496:509 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.6 | |
| IL_6Q97_010 | 1/1/484:486, 1/1/495:496 | Single stack bend Not in a motif group | geometric IL_4WF9_007 IL_76488.2 | |
| IL_6Q97_011 | 1/1/486:487, 1/1/493:495 | Single stack bend Not in a motif group | geometric IL_7A0S_005 IL_76488.2 | |
| IL_6Q97_012 | 1/1/536:539, 1/1/554:557 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.9 | |
| IL_6Q97_013 | 1/1/564:566, 1/1/575:577 | UU cWW Not in a motif group | geometric IL_5MWI_008 IL_95997.1 | |
| IL_6Q97_014 | 1/1/606:611, 1/1/617:622 | No text annotation Not in a motif group | ||
| IL_6Q97_015 | 1/1/671:673, 1/1/808:809 | Single stack bend Not in a motif group | geometric IL_4V9F_081 IL_76488.2 | |
| IL_6Q97_016 | 1/1/673:678, 1/1/799:808 | No text annotation Not in a motif group | ||
| IL_6Q97_017 | 1/1/697:698, 1/1/763:765 | Single bulged A Not in a motif group | geometric IL_4V9F_025 IL_37497.2 | |
| IL_6Q97_018 | 1/1/702:707, 1/1/724:730 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_6Q97_019 | 1/1/738:740, 1/1/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_6Q97_020 | 1/1/775:777, 1/1/787:791 | Multiple bulged bases Not in a motif group | geometric IL_4WF9_027 IL_90991.6 | |
| IL_6Q97_021 | 1/1/815:817, 1/1/1191:1192 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6Q97_022 | 1/1/837:838, 1/1/940:942 | Single stack bend Not in a motif group | homologous IL_7A0S_022 IL_92001.1 | |
| IL_6Q97_023 | 1/1/844:847, 1/1/933:934 | Other IL Not in a motif group | geometric IL_5J7L_267 IL_92001.1 | |
| IL_6Q97_024 | 1/1/847:848, 1/1/930:933 | Stack outside cWW Not in a motif group | homologous IL_5J7L_268 IL_37629.1 | |
| IL_6Q97_025 | 1/1/848:851, 1/1/926:930 | No text annotation Not in a motif group | ||
| IL_6Q97_026 | 1/1/851:854, 1/1/924:926 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_6Q97_027 | 1/1/854:855, 1/1/922:924 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_6Q97_028 | 1/1/856:862, 1/1/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
| IL_6Q97_029 | 1/1/862:863, 1/1/913:915 | Single bulged G Not in a motif group | geometric IL_5J7L_271 IL_00225.2 | |
| IL_6Q97_030 | 1/1/863:869, 1/1/908:913 | No text annotation Not in a motif group | ||
| IL_6Q97_031 | 1/1/870:872, 1/1/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
| IL_6Q97_032 | 1/1/875:879, 1/1/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_6Q97_033 | 1/1/880:883, 1/1/893:897 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_2IL9_001 IL_42334.1 | |
| IL_6Q97_034 | 1/1/994:996, 1/1/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_6Q97_035 | 1/1/997:1002, 1/1/1153:1158 | UAA/GAN with extra cWW Not in a motif group | geometric IL_7A0S_098 IL_49767.5 | |
| IL_6Q97_036 | 1/1/1004:1011, 1/1/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.7 | |
| IL_6Q97_037 | 1/1/1011:1013, 1/1/1149:1150 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 | |
| IL_6Q97_038 | 1/1/1013:1017, 1/1/1146:1149 | No text annotation Not in a motif group | ||
| IL_6Q97_039 | 1/1/1017:1024, 1/1/1140:1146 | No text annotation Not in a motif group | ||
| IL_6Q97_040 | 1/1/1024:1030, 1/1/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_6Q97_041 | 1/1/1031:1034, 1/1/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_6Q97_042 | 1/1/1038:1042, 1/1/1114:1117 | No text annotation Not in a motif group | ||
| IL_6Q97_043 | 1/1/1042:1043, 1/1/1112:1114 | Single stack bend Not in a motif group | geometric IL_7RQB_024 IL_92001.1 | |
| IL_6Q97_044 | 1/1/1043:1052, 1/1/1107:1112 | No text annotation Not in a motif group | ||
| IL_6Q97_045 | 1/1/1196:1198, 1/1/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_52767.2 | |
| IL_6Q97_046 | 1/1/1262:1270, 1/1/2010:2017 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4WF9_008 IL_35728.2 | |
| IL_6Q97_047 | 1/1/1310:1313, 1/1/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_6Q97_048 | 1/1/1319:1324, 1/1/1330:1333 | C-loop with extra cWW pair Not in a motif group | geometric IL_4V88_408 IL_93630.2 | |
| IL_6Q97_049 | 1/1/1350:1355, 1/1/1376:1381 | UAA/GAN with extra cWW Not in a motif group | geometric IL_7A0S_098 IL_49767.5 | |
| IL_6Q97_050 | 1/1/1357:1361, 1/1/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_6Q97_051 | 1/1/1413:1417, 1/1/1581:1589 | No text annotation Not in a motif group | ||
| IL_6Q97_052 | 1/1/1417:1421, 1/1/1578:1581 | No text annotation Not in a motif group | ||
| IL_6Q97_053 | 1/1/1421:1422, 1/1/1576:1578 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
| IL_6Q97_054 | 1/1/1432:1435, 1/1/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_6Q97_055 | 1/1/1437:1440, 1/1/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_04059.1 | |
| IL_6Q97_056 | 1/1/1450:1451, 1/1/1459:1461 | Single bulged U Not in a motif group | homologous IL_5J7L_298 IL_83039.13 | |
| IL_6Q97_057 | 1/1/1468:1471, 1/1/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_6Q97_058 | 1/1/1472:1479, 1/1/1512:1519 | No text annotation Not in a motif group | ||
| IL_6Q97_059 | 1/1/1481:1482, 1/1/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.4 | |
| IL_6Q97_060 | 1/1/1526:1530, 1/1/1541:1546 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_6Q97_061 | 1/1/1651:1656, 1/1/2004:2006 | No text annotation Not in a motif group | homologous IL_7A0S_059 IL_12566.2 | |
| IL_6Q97_062 | 1/1/1685:1691, 1/1/1696:1703 | No text annotation Not in a motif group | ||
| IL_6Q97_063 | 1/1/1712:1718, 1/1/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_6Q97_064 | 1/1/1720:1724, 1/1/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.8 | |
| IL_6Q97_065 | 1/1/1768:1771, 1/1/1980:1984 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_402D_001 IL_30621.2 | |
| IL_6Q97_066 | 1/1/1798:1806, 1/1/1811:1821 | No text annotation Not in a motif group | ||
| IL_6Q97_067 | 1/1/1837:1840, 1/1/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_7A0S_066 IL_88739.1 | |
| IL_6Q97_068 | 1/1/1840:1842, 1/1/1898:1902 | No text annotation Not in a motif group | ||
| IL_6Q97_069 | 1/1/1846:1849, 1/1/1893:1894 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
| IL_6Q97_070 | 1/1/1860:1862, 1/1/1881:1882 | Single stack bend Not in a motif group | geometric IL_4V9F_081 IL_76488.2 | |
| IL_6Q97_071 | 1/1/1862:1863, 1/1/1879:1881 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
| IL_6Q97_072 | 1/1/1864:1867, 1/1/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_6Q97_073 | 1/1/1907:1909, 1/1/1922:1924 | No text annotation Not in a motif group | ||
| IL_6Q97_074 | 1/1/1933:1946, 1/1/1960:1967 | No text annotation Not in a motif group | ||
| IL_6Q97_075 | 1/1/2050:2052, 1/1/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_6Q97_076 | 1/1/2054:2056, 1/1/2612:2615 | No text annotation Not in a motif group | homologous IL_4WF9_079 IL_54678.5 | |
| IL_6Q97_077 | 1/1/2067:2072, 1/1/2437:2443 | No text annotation Not in a motif group | ||
| IL_6Q97_078 | 1/1/2079:2083, 1/1/2236:2241 | Triple sheared Not in a motif group | geometric IL_4WFL_001 IL_56467.8 | |
| IL_6Q97_079 | 1/1/2084:2088, 1/1/2231:2235 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_6Q97_080 | 1/1/2100:2108, 1/1/2182:2189 | No text annotation Not in a motif group | ||
| IL_6Q97_081 | 1/1/2108:2121, 1/1/2177:2182 | No text annotation Not in a motif group | ||
| IL_6Q97_082 | 1/1/2124:2127, 1/1/2161:2174 | No text annotation Not in a motif group | ||
| IL_6Q97_083 | 1/1/2202:2204, 1/1/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_6Q97_084 | 1/1/2350:2355, 1/1/2362:2367 | No text annotation Not in a motif group | ||
| IL_6Q97_085 | 1/1/2396:2400, 1/1/2417:2420 | No text annotation Not in a motif group | ||
| IL_6Q97_086 | 1/1/2400:2403, 1/1/2414:2417 | No text annotation Not in a motif group | ||
| IL_6Q97_087 | 1/1/2456:2459, 1/1/2493:2495 | No text annotation Not in a motif group | homologous IL_5J7L_336 NA | |
| IL_6Q97_088 | 1/1/2459:2461, 1/1/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_5J7L_337 IL_92788.2 | |
| IL_6Q97_089 | 1/1/2466:2470, 1/1/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_6Q97_090 | 1/1/2507:2512, 1/1/2574:2582 | No text annotation Not in a motif group | ||
| IL_6Q97_091 | 1/1/2512:2513, 1/1/2571:2574 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_098 IL_71530.2 | |
| IL_6Q97_092 | 1/1/2513:2515, 1/1/2570:2571 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6Q97_093 | 1/1/2515:2516, 1/1/2568:2570 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
| IL_6Q97_094 | 1/1/2521:2523, 1/1/2540:2544 | No text annotation Not in a motif group | ||
| IL_6Q97_095 | 1/1/2524:2526, 1/1/2538:2539 | Single stack bend Not in a motif group | geometric IL_5J7L_249 IL_76488.2 | |
| IL_6Q97_096 | 1/1/2526:2527, 1/1/2536:2538 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
| IL_6Q97_097 | 1/1/2588:2590, 1/1/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_6Q97_098 | 1/1/2591:2594, 1/1/2599:2603 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.2 | |
| IL_6Q97_099 | 1/1/2636:2641, 1/1/2773:2782 | No text annotation Not in a motif group | ||
| IL_6Q97_100 | 1/1/2647:2648, 1/1/2672:2674 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_76488.2 | |
| IL_6Q97_101 | 1/1/2652:2658, 1/1/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_5J7L_346 IL_16458.1 | |
| IL_6Q97_102 | 1/1/2676:2677, 1/1/2730:2732 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_6Q97_103 | 1/1/2678:2684, 1/1/2725:2729 | No text annotation Not in a motif group | ||
| IL_6Q97_104 | 1/1/2686:2691, 1/1/2718:2723 | No text annotation Not in a motif group | ||
| IL_6Q97_105 | 1/1/2695:2699, 1/1/2708:2714 | No text annotation Not in a motif group | ||
| IL_6Q97_106 | 1/1/2737:2742, 1/1/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_6Q97_107 | 1/1/2794:2796, 1/1/2799:2802 | No text annotation Not in a motif group | ||
| IL_6Q97_108 | 1/1/2806:2811, 1/1/2889:2892 | No text annotation Not in a motif group | homologous IL_5J7L_351 IL_49460.2 | |
| IL_6Q97_109 | 1/1/2843:2846, 1/1/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_6Q97_110 | 1/1/2847:2852, 1/1/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_6Q97_111 | 1/2/44:45, 1/2/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_6Q97_112 | 1/2/47:52, 1/2/359:361 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_11178.1 | |
| IL_6Q97_113 | 1/2/54:56, 1/2/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_6Q97_114 | 1/2/63:66, 1/2/103:104 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_6Q97_115 | 1/2/67:69, 1/2/99:102 | Minor groove platform with extra cWW Not in a motif group | geometric IL_5J7L_006 IL_65006.1 | |
| IL_6Q97_116 | 1/2/69:73, 1/2/97:99 | No text annotation Not in a motif group | ||
| IL_6Q97_117 | 1/2/74:78, 1/2/92:96 | No text annotation Not in a motif group | ||
| IL_6Q97_118 | 1/2/128:132, 1/2/230:233 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.2 | |
| IL_6Q97_119 | 1/2/132:136, 1/2/227:230 | Minor groove platform related Not in a motif group | geometric IL_5J7L_010 IL_58764.3 | |
| IL_6Q97_120 | 1/2/144:146, 1/2/176:178 | Isolated cWH basepair Not in a motif group | geometric IL_5J7L_011 IL_51629.2 | |
| IL_6Q97_121 | 1/2/146:153, 1/2/168:176 | No text annotation Not in a motif group | ||
| IL_6Q97_122 | 1/2/203:207, 1/2/212:214 | No text annotation Not in a motif group | homologous IL_5J7L_013 IL_33912.1 | |
| IL_6Q97_123 | 1/2/242:249, 1/2/275:284 | No text annotation Not in a motif group | ||
| IL_6Q97_124 | 1/2/249:252, 1/2/274:275 | No text annotation Not in a motif group | geometric IL_4LFB_012 IL_48100.2 | |
| IL_6Q97_125 | 1/2/292:293, 1/2/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_6Q97_126 | 1/2/319:322, 1/2/332:334 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_6Q97_127 | 1/2/370:375, 1/2/389:391 | No text annotation Not in a motif group | ||
| IL_6Q97_128 | 1/2/375:376, 1/2/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6Q97_129 | 1/2/407:416, 1/2/427:435 | No text annotation Not in a motif group | ||
| IL_6Q97_130 | 1/2/440:442, 1/2/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_6Q97_131 | 1/2/446:450, 1/2/483:488 | tSH-tHW-tWW Not in a motif group | homologous IL_5J7L_022 IL_88269.3 | |
| IL_6Q97_132 | 1/2/450:454, 1/2/479:483 | No text annotation Not in a motif group | ||
| IL_6Q97_133 | 1/2/454:455, 1/2/477:479 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6Q97_134 | 1/2/504:511, 1/2/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_6Q97_135 | 1/2/515:521, 1/2/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_6Q97_136 | 1/2/580:585, 1/2/756:761 | tSH-tHW-tHS-cWW Not in a motif group | geometric IL_1LNT_002 IL_76308.4 | |
| IL_6Q97_137 | 1/2/594:596, 1/2/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_6Q97_138 | 1/2/597:599, 1/2/639:643 | 8-nt loop receptor Not in a motif group | geometric IL_6CK5_002 IL_93341.1 | |
| IL_6Q97_139 | 1/2/605:612, 1/2/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
| IL_6Q97_140 | 1/2/654:655, 1/2/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_031 IL_50694.2 | |
| IL_6Q97_141 | 1/2/658:660, 1/2/745:748 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_6Q97_142 | 1/2/661:667, 1/2/739:744 | No text annotation Not in a motif group | ||
| IL_6Q97_143 | 1/2/673:679, 1/2/711:717 | No text annotation Not in a motif group | ||
| IL_6Q97_144 | 1/2/684:688, 1/2/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_6Q97_145 | 1/2/771:778, 1/2/804:808 | No text annotation Not in a motif group | ||
| IL_6Q97_146 | 1/2/779:783, 1/2/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_6Q97_147 | 1/2/826:829, 1/2/857:874 | No text annotation Not in a motif group | ||
| IL_6Q97_148 | 1/2/922:923, 1/2/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_6Q97_149 | 1/2/925:928, 1/2/1389:1391 | CA cWW with bulged A Not in a motif group | geometric IL_4P3T_005 IL_95997.1 | |
| IL_6Q97_150 | 1/2/932:935, 1/2/1380:1385 | No text annotation Not in a motif group | geometric IL_4YAZ_005 IL_33912.1 | |
| IL_6Q97_151 | 1/2/953:954, 1/2/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_6Q97_152 | 1/2/998:1000, 1/2/1040:1043 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_6Q97_153 | 1/2/1048:1050, 1/2/1208:1209 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.13 | |
| IL_6Q97_154 | 1/2/1050:1056, 1/2/1204:1208 | No text annotation Not in a motif group | ||
| IL_6Q97_155 | 1/2/1057:1059, 1/2/1198:1203 | No text annotation Not in a motif group | ||
| IL_6Q97_156 | 1/2/1059:1063, 1/2/1193:1198 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_6Q97_157 | 1/2/1124:1128, 1/2/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_6Q97_158 | 1/2/1129:1132, 1/2/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_6Q97_159 | 1/2/1247:1253, 1/2/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_6Q97_160 | 1/2/1255:1258, 1/2/1277:1282 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_6Q97_161 | 1/2/1259:1263, 1/2/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_6Q97_162 | 1/2/1303:1308, 1/2/1329:1334 | No text annotation Not in a motif group | geometric IL_5J7L_057 IL_19954.2 | |
| IL_6Q97_163 | 1/2/1399:1401, 1/2/1501:1504 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_6Q97_164 | 1/2/1401:1404, 1/2/1497:1501 | No text annotation Not in a motif group | homologous IL_5J7L_059 NA | |
| IL_6Q97_165 | 1/2/1405:1410, 1/2/1490:1496 | No text annotation Not in a motif group | ||
| IL_6Q97_166 | 1/2/1412:1416, 1/2/1484:1488 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_6Q97_167 | 1/2/1416:1421, 1/2/1479:1484 | No text annotation Not in a motif group | ||
| IL_6Q97_168 | 1/2/1429:1435, 1/2/1466:1471 | No text annotation Not in a motif group | ||
| IL_6Q97_169 | 1/2/1440:1449, 1/2/1454:1461 | No text annotation Not in a motif group | ||
| IL_6Q97_170 | 1/2/1508:1510, 1/2/1525:1528 | No text annotation Not in a motif group | geometric IL_4WSM_372 IL_33061.1 | |
| IL_6Q97_171 | 1/3/17:21, 1/3/62:67 | No text annotation Not in a motif group | ||
| IL_6Q97_172 | 1/3/23:28, 1/3/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
| IL_6Q97_173 | 1/3/30:32, 1/3/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_6Q97_174 | 1/3/34:38, 1/3/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_5J7L_358 IL_58103.6 | |
| IL_6Q97_175 | 1/4/37:41, 1/4/313:318 | No text annotation Not in a motif group | ||
| IL_6Q97_176 | 1/4/113:115, 1/4/129:132 | No text annotation Not in a motif group | ||
| IL_6Q97_177 | 1/4/141:146, 1/4/169:178 | No text annotation Not in a motif group | ||
| IL_6Q97_178 | 1/4/147:152, 1/4/163:168 | No text annotation Not in a motif group | ||
| IL_6Q97_179 | 1/8/3:5, 1/8/69:71 | No text annotation Not in a motif group | homologous IL_4WSM_380 NA | |
| IL_6Q97_180 | 1/8/51:53, 1/8/63:65 | No text annotation Not in a motif group | homologous IL_4V9K_064 IL_95997.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6Q97_001 | 1/1/30:31, 1/1/474:481, 1/1/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_6Q97_002 | 1/1/56:57, 1/1/70:76, 1/1/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_6Q97_003 | 1/1/682:689, 1/1/773:775, 1/1/791:795 | No text annotation Not in a motif group | ||
| J3_6Q97_004 | 1/1/698:701, 1/1/731:736, 1/1/760:763 | No text annotation Not in a motif group | homologous J3_5J7L_039 NA | |
| J3_6Q97_005 | 1/1/1298:1303, 1/1/1625:1627, 1/1/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_6Q97_006 | 1/1/1305:1309, 1/1/1605:1612, 1/1/1619:1623 | No text annotation Not in a motif group | ||
| J3_6Q97_007 | 1/1/1663:1674, 1/1/1990:1992, 1/1/1996:1997 | No text annotation Not in a motif group | ||
| J3_6Q97_008 | 1/1/2091:2093, 1/1/2196:2201, 1/1/2222:2228 | No text annotation Not in a motif group | homologous J3_4WF9_007 NA | |
| J3_6Q97_009 | 1/1/2295:2299, 1/1/2317:2323, 1/1/2332:2337 | No text annotation Not in a motif group | ||
| J3_6Q97_010 | 1/1/2516:2520, 1/1/2545:2549, 1/1/2559:2568 | No text annotation Not in a motif group | ||
| J3_6Q97_011 | 1/2/46:47, 1/2/361:369, 1/2/392:395 | No text annotation Not in a motif group | ||
| J3_6Q97_012 | 1/2/586:588, 1/2/651:654, 1/2/754:755 | No text annotation Not in a motif group | ||
| J3_6Q97_013 | 1/2/670:673, 1/2/717:725, 1/2/732:736 | No text annotation Not in a motif group | ||
| J3_6Q97_014 | 1/2/941:946, 1/2/1235:1237, 1/2/1337:1342 | No text annotation Not in a motif group | ||
| J3_6Q97_015 | 1/2/955:962, 1/2/973:984, 1/2/1221:1225 | No text annotation Not in a motif group | ||
| J3_6Q97_016 | 1/2/990:998, 1/2/1043:1047, 1/2/1210:1215 | No text annotation Not in a motif group | ||
| J3_6Q97_018 | 1/2/1073:1076, 1/2/1081:1087, 1/2/1098:1102 | No text annotation Not in a motif group | ||
| J3_6Q97_019 | 1/2/1237:1241, 1/2/1296:1303, 1/2/1334:1337 | No text annotation Not in a motif group | homologous J3_6CZR_026 NA | |
| J3_6Q97_020 | 1/3/10:16, 1/3/68:70, 1/3/106:110 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6Q97_017 | No text annotation |
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