6Q98 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6Q98_001 | 1/1/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
| HL_6Q98_002 | 1/1/86:96 | No text annotation Not in a motif group | ||
| HL_6Q98_003 | 1/1/122:129 | No text annotation Not in a motif group | ||
| HL_6Q98_004 | 1/1/137:142 | UNCG Not in a motif group | geometric HL_2HW8_001 HL_03562.2 | |
| HL_6Q98_005 | 1/1/158:168 | No text annotation Not in a motif group | ||
| HL_6Q98_006 | 1/1/194:201 | No text annotation Not in a motif group | homologous HL_4WF9_006 HL_06192.2 | |
| HL_6Q98_007 | 1/1/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_6Q98_008 | 1/1/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_6Q98_009 | 1/1/305:312 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_6Q98_010 | 1/1/319:323 | No text annotation Not in a motif group | homologous HL_4WF9_011 HL_75407.1 | |
| HL_6Q98_011 | 1/1/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_6Q98_012 | 1/1/380:394 | No text annotation Not in a motif group | ||
| HL_6Q98_013 | 1/1/410:417 | No text annotation Not in a motif group | homologous HL_7A0S_014 HL_96598.1 | |
| HL_6Q98_014 | 1/1/461:468 | No text annotation Not in a motif group | ||
| HL_6Q98_015 | 1/1/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
| HL_6Q98_016 | 1/1/543:550 | No text annotation Not in a motif group | ||
| HL_6Q98_017 | 1/1/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_150 HL_89380.2 | |
| HL_6Q98_018 | 1/1/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
| HL_6Q98_019 | 1/1/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_6Q98_020 | 1/1/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_77805.2 | |
| HL_6Q98_021 | 1/1/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_6Q98_022 | 1/1/744:753 | No text annotation Not in a motif group | homologous HL_5J7L_155 NA | |
| HL_6Q98_023 | 1/1/778:786 | No text annotation Not in a motif group | ||
| HL_6Q98_024 | 1/1/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_6Q98_025 | 1/1/880:897 | No text annotation Not in a motif group | ||
| HL_6Q98_026 | 1/1/953:964 | No text annotation Not in a motif group | ||
| HL_6Q98_027 | 1/1/977:986 | No text annotation Not in a motif group | ||
| HL_6Q98_028 | 1/1/1058:1080 | No text annotation Not in a motif group | ||
| HL_6Q98_029 | 1/1/1092:1099 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_6Q98_030 | 1/1/1171:1178 | No text annotation Not in a motif group | ||
| HL_6Q98_031 | 1/1/1222:1227 | No text annotation Not in a motif group | homologous HL_7A0S_031 HL_87030.2 | |
| HL_6Q98_032 | 1/1/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_6Q98_033 | 1/1/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_6Q98_034 | 1/1/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_6Q98_035 | 1/1/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_6Q98_036 | 1/1/1451:1459 | No text annotation Not in a motif group | homologous HL_5J7L_169 HL_53837.1 | |
| HL_6Q98_037 | 1/1/1492:1498 | No text annotation Not in a motif group | homologous HL_7A0S_037 HL_46680.1 | |
| HL_6Q98_038 | 1/1/1532:1539 | No text annotation Not in a motif group | ||
| HL_6Q98_039 | 1/1/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_6Q98_040 | 1/1/1612:1619 | No text annotation Not in a motif group | ||
| HL_6Q98_041 | 1/1/1629:1637 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
| HL_6Q98_042 | 1/1/1691:1696 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_6Q98_043 | 1/1/1727:1733 | No text annotation Not in a motif group | geometric HL_5TBW_012 HL_86373.2 | |
| HL_6Q98_044 | 1/1/1752:1756 | No text annotation Not in a motif group | homologous HL_7A0S_044 HL_76539.2 | |
| HL_6Q98_045 | 1/1/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_6Q98_046 | 1/1/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_6Q98_047 | 1/1/1860:1882 | No text annotation Not in a motif group | ||
| HL_6Q98_048 | 1/1/1910:1920 | No text annotation Not in a motif group | ||
| HL_6Q98_049 | 1/1/1949:1957 | No text annotation Not in a motif group | homologous HL_4WF9_046 HL_51824.1 | |
| HL_6Q98_050 | 1/1/2027:2036 | No text annotation Not in a motif group | ||
| HL_6Q98_051 | 1/1/2127:2161 | No text annotation Not in a motif group | ||
| HL_6Q98_052 | 1/1/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_6Q98_053 | 1/1/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_6Q98_054 | 1/1/2264:2276 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_6Q98_055 | 1/1/2303:2313 | No text annotation Not in a motif group | ||
| HL_6Q98_056 | 1/1/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_6Q98_057 | 1/1/2354:2363 | No text annotation Not in a motif group | ||
| HL_6Q98_058 | 1/1/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_6Q98_059 | 1/1/2404:2413 | No text annotation Not in a motif group | homologous HL_4WF9_055 HL_30784.2 | |
| HL_6Q98_060 | 1/1/2471:2479 | No text annotation Not in a motif group | homologous HL_7A0S_059 HL_06192.2 | |
| HL_6Q98_061 | 1/1/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_6Q98_062 | 1/1/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_6Q98_063 | 1/1/2594:2599 | No text annotation Not in a motif group | homologous HL_7A0S_062 HL_42097.1 | |
| HL_6Q98_064 | 1/1/2658:2663 | Other HL Not in a motif group | geometric HL_6UFH_004 HL_42097.1 | |
| HL_6Q98_065 | 1/1/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_4WF9_061 HL_46680.1 | |
| HL_6Q98_066 | 1/1/2745:2759 | No text annotation Not in a motif group | homologous HL_4WF9_062 HL_56677.7 | |
| HL_6Q98_067 | 1/1/2795:2801 | Other HL Not in a motif group | homologous HL_5J7L_200 HL_34168.2 | |
| HL_6Q98_068 | 1/1/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_6Q98_069 | 1/1/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 | |
| HL_6Q98_070 | 1/2/11:23 | No text annotation Not in a motif group | ||
| HL_6Q98_071 | 1/2/79:90 | No text annotation Not in a motif group | ||
| HL_6Q98_072 | 1/2/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_6Q98_073 | 1/2/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_6Q98_074 | 1/2/206:213 | No text annotation Not in a motif group | ||
| HL_6Q98_075 | 1/2/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_6Q98_076 | 1/2/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_6Q98_077 | 1/2/320:333 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_6Q98_078 | 1/2/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_6Q98_079 | 1/2/379:384 | GNRA Not in a motif group | homologous HL_6CZR_081 HL_42097.1 | |
| HL_6Q98_080 | 1/2/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_6Q98_081 | 1/2/457:475 | No text annotation Not in a motif group | ||
| HL_6Q98_082 | 1/2/521:528 | No text annotation Not in a motif group | homologous HL_4LFB_013 NA | |
| HL_6Q98_083 | 1/2/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
| HL_6Q98_084 | 1/2/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_6Q98_085 | 1/2/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_6Q98_086 | 1/2/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_6Q98_087 | 1/2/840:846 | No text annotation Not in a motif group | ||
| HL_6Q98_088 | 1/2/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_6Q98_089 | 1/2/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_6Q98_090 | 1/2/962:973 | No text annotation Not in a motif group | ||
| HL_6Q98_091 | 1/2/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_6Q98_092 | 1/2/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_6Q98_093 | 1/2/1087:1098 | No text annotation Not in a motif group | ||
| HL_6Q98_094 | 1/2/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_6Q98_095 | 1/2/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_6Q98_096 | 1/2/1264:1271 | Other HL Not in a motif group | geometric HL_5J7L_200 HL_34168.2 | |
| HL_6Q98_097 | 1/2/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_89380.2 | |
| HL_6Q98_098 | 1/2/1355:1367 | No text annotation Not in a motif group | ||
| HL_6Q98_099 | 1/2/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_6Q98_101 | 1/3/33:49 | No text annotation Not in a motif group | ||
| HL_6Q98_102 | 1/3/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
| HL_6Q98_103 | 1/4/58:75 | No text annotation Not in a motif group | ||
| HL_6Q98_104 | 1/4/117:127 | No text annotation Not in a motif group | ||
| HL_6Q98_105 | 1/4/147:168 | No text annotation Not in a motif group | ||
| HL_6Q98_106 | 1/4/210:219 | No text annotation Not in a motif group | ||
| HL_6Q98_107 | 1/4/259:272 | No text annotation Not in a motif group | ||
| HL_6Q98_108 | 1/4/340:348 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V8Q_110 HL_71309.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6Q98_100 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6Q98_001 | 1/1/36:37, 1/1/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_6Q98_002 | 1/1/42:44, 1/1/434:437 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4WF9_003 IL_65006.1 | |
| IL_6Q98_003 | 1/1/81:85, 1/1/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_93699.1 | |
| IL_6Q98_004 | 1/1/183:184, 1/1/212:214 | Single stack bend Not in a motif group | homologous IL_7A0S_005 IL_76488.2 | |
| IL_6Q98_005 | 1/1/188:194, 1/1/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
| IL_6Q98_006 | 1/1/239:245, 1/1/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_6Q98_007 | 1/1/274:281, 1/1/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_6Q98_008 | 1/1/293:295, 1/1/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_6Q98_009 | 1/1/481:485, 1/1/495:509 | No text annotation Not in a motif group | geometric IL_4V9F_014 IL_31504.1 | |
| IL_6Q98_010 | 1/1/536:539, 1/1/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_6Q98_011 | 1/1/564:566, 1/1/575:577 | No text annotation Not in a motif group | geometric IL_5AY2_001 IL_95997.1 | |
| IL_6Q98_012 | 1/1/605:610, 1/1/618:623 | No text annotation Not in a motif group | ||
| IL_6Q98_013 | 1/1/697:698, 1/1/763:765 | Single bulged A Not in a motif group | geometric IL_4V9F_025 IL_37497.2 | |
| IL_6Q98_014 | 1/1/702:703, 1/1/728:730 | Single bulged G Not in a motif group | homologous IL_5J7L_262 IL_00225.2 | |
| IL_6Q98_015 | 1/1/703:707, 1/1/724:728 | Triple sheared Not in a motif group | geometric IL_4V9F_027 IL_56467.8 | |
| IL_6Q98_016 | 1/1/738:741, 1/1/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_6Q98_017 | 1/1/775:777, 1/1/787:791 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.6 | |
| IL_6Q98_018 | 1/1/837:838, 1/1/940:942 | Single stack bend Not in a motif group | homologous IL_4WF9_028 IL_92001.1 | |
| IL_6Q98_019 | 1/1/844:847, 1/1/933:934 | Other IL Not in a motif group | geometric IL_5J7L_267 IL_92001.1 | |
| IL_6Q98_020 | 1/1/847:849, 1/1/929:933 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_002 IL_82068.2 | |
| IL_6Q98_021 | 1/1/850:851, 1/1/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
| IL_6Q98_022 | 1/1/856:862, 1/1/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.3 | |
| IL_6Q98_023 | 1/1/862:863, 1/1/913:915 | Single bulged G Not in a motif group | homologous IL_5J7L_271 IL_00225.2 | |
| IL_6Q98_024 | 1/1/864:873, 1/1/904:912 | No text annotation Not in a motif group | ||
| IL_6Q98_025 | 1/1/875:879, 1/1/898:902 | No text annotation Not in a motif group | ||
| IL_6Q98_026 | 1/1/994:996, 1/1/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_6Q98_027 | 1/1/998:1002, 1/1/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.2 | |
| IL_6Q98_028 | 1/1/1004:1011, 1/1/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.7 | |
| IL_6Q98_029 | 1/1/1011:1013, 1/1/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.13 | |
| IL_6Q98_030 | 1/1/1018:1024, 1/1/1140:1144 | No text annotation Not in a motif group | homologous IL_5J7L_280 IL_57188.3 | |
| IL_6Q98_031 | 1/1/1024:1030, 1/1/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_6Q98_032 | 1/1/1031:1036, 1/1/1119:1123 | No text annotation Not in a motif group | ||
| IL_6Q98_033 | 1/1/1038:1041, 1/1/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
| IL_6Q98_034 | 1/1/1043:1052, 1/1/1107:1112 | No text annotation Not in a motif group | ||
| IL_6Q98_035 | 1/1/1087:1090, 1/1/1101:1102 | No text annotation Not in a motif group | homologous IL_6PRV_002 NA | |
| IL_6Q98_036 | 1/1/1196:1198, 1/1/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
| IL_6Q98_037 | 1/1/1202:1206, 1/1/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_6Q98_038 | 1/1/1208:1216, 1/1/1233:1238 | No text annotation Not in a motif group | ||
| IL_6Q98_039 | 1/1/1262:1269, 1/1/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_6Q98_040 | 1/1/1304:1306, 1/1/1623:1624 | Single stack bend Not in a motif group | geometric IL_5TBW_009 IL_76488.2 | |
| IL_6Q98_041 | 1/1/1319:1324, 1/1/1330:1333 | No text annotation Not in a motif group | ||
| IL_6Q98_042 | 1/1/1357:1362, 1/1/1369:1374 | tSH-tHW-tHS-cWW Not in a motif group | geometric IL_3LQX_002 IL_76308.4 | |
| IL_6Q98_043 | 1/1/1414:1416, 1/1/1582:1588 | No text annotation Not in a motif group | ||
| IL_6Q98_044 | 1/1/1417:1421, 1/1/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_6Q98_045 | 1/1/1432:1435, 1/1/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_6Q98_046 | 1/1/1436:1441, 1/1/1550:1556 | No text annotation Not in a motif group | ||
| IL_6Q98_047 | 1/1/1450:1451, 1/1/1459:1461 | Single bulged U Not in a motif group | geometric IL_5J7L_298 IL_83039.13 | |
| IL_6Q98_048 | 1/1/1468:1471, 1/1/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_6Q98_049 | 1/1/1474:1478, 1/1/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.1 | |
| IL_6Q98_050 | 1/1/1480:1482, 1/1/1507:1511 | No text annotation Not in a motif group | ||
| IL_6Q98_051 | 1/1/1489:1491, 1/1/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
| IL_6Q98_052 | 1/1/1526:1529, 1/1/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_6Q98_053 | 1/1/1651:1656, 1/1/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_6Q98_054 | 1/1/1663:1665, 1/1/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.7 | |
| IL_6Q98_055 | 1/1/1666:1669, 1/1/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_6Q98_056 | 1/1/1669:1674, 1/1/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_4WF9_065 IL_82842.2 | |
| IL_6Q98_057 | 1/1/1686:1691, 1/1/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_6Q98_058 | 1/1/1712:1718, 1/1/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_6Q98_059 | 1/1/1720:1725, 1/1/1735:1740 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7A0S_018 IL_86929.2 | |
| IL_6Q98_060 | 1/1/1769:1771, 1/1/1980:1983 | Self complementary Not in a motif group | geometric IL_5M0H_001 IL_82068.2 | |
| IL_6Q98_061 | 1/1/1798:1804, 1/1/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7A0S_065 IL_17069.3 | |
| IL_6Q98_062 | 1/1/1837:1840, 1/1/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_5J7L_314 IL_88739.1 | |
| IL_6Q98_063 | 1/1/1840:1842, 1/1/1898:1902 | No text annotation Not in a motif group | ||
| IL_6Q98_064 | 1/1/1846:1849, 1/1/1893:1894 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7A0S_068 IL_88739.1 | |
| IL_6Q98_065 | 1/1/1933:1934, 1/1/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_318 IL_59677.2 | |
| IL_6Q98_066 | 1/1/1934:1945, 1/1/1961:1964 | No text annotation Not in a motif group | geometric IL_7A0S_072 IL_81589.2 | |
| IL_6Q98_067 | 1/1/2050:2054, 1/1/2615:2618 | No text annotation Not in a motif group | ||
| IL_6Q98_068 | 1/1/2054:2056, 1/1/2612:2615 | No text annotation Not in a motif group | ||
| IL_6Q98_069 | 1/1/2064:2071, 1/1/2438:2446 | No text annotation Not in a motif group | ||
| IL_6Q98_070 | 1/1/2081:2083, 1/1/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7A0S_077 IL_38958.7 | |
| IL_6Q98_071 | 1/1/2085:2087, 1/1/2232:2234 | No text annotation Not in a motif group | homologous IL_7A0S_078 IL_95997.1 | |
| IL_6Q98_072 | 1/1/2124:2127, 1/1/2161:2174 | No text annotation Not in a motif group | ||
| IL_6Q98_073 | 1/1/2202:2205, 1/1/2219:2221 | No text annotation Not in a motif group | geometric IL_5TBW_016 IL_51629.2 | |
| IL_6Q98_074 | 1/1/2350:2353, 1/1/2364:2367 | Double sheared Not in a motif group | homologous IL_4WF9_087 IL_09705.9 | |
| IL_6Q98_075 | 1/1/2401:2403, 1/1/2414:2415 | No text annotation Not in a motif group | ||
| IL_6Q98_076 | 1/1/2453:2455, 1/1/2496:2500 | No text annotation Not in a motif group | homologous IL_5J7L_335 NA | |
| IL_6Q98_077 | 1/1/2456:2462, 1/1/2488:2495 | No text annotation Not in a motif group | ||
| IL_6Q98_078 | 1/1/2465:2470, 1/1/2480:2485 | No text annotation Not in a motif group | ||
| IL_6Q98_079 | 1/1/2507:2509, 1/1/2579:2582 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
| IL_6Q98_080 | 1/1/2509:2512, 1/1/2574:2579 | No text annotation Not in a motif group | ||
| IL_6Q98_081 | 1/1/2512:2515, 1/1/2570:2574 | No text annotation Not in a motif group | ||
| IL_6Q98_082 | 1/1/2515:2516, 1/1/2568:2570 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
| IL_6Q98_083 | 1/1/2522:2523, 1/1/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_6Q98_084 | 1/1/2588:2590, 1/1/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_6Q98_085 | 1/1/2591:2592, 1/1/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_6Q98_086 | 1/1/2636:2640, 1/1/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.1 | |
| IL_6Q98_087 | 1/1/2652:2658, 1/1/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_5J7L_346 IL_16458.1 | |
| IL_6Q98_088 | 1/1/2680:2686, 1/1/2723:2727 | No text annotation Not in a motif group | ||
| IL_6Q98_089 | 1/1/2686:2691, 1/1/2718:2723 | No text annotation Not in a motif group | ||
| IL_6Q98_090 | 1/1/2695:2698, 1/1/2709:2714 | No text annotation Not in a motif group | ||
| IL_6Q98_091 | 1/1/2737:2742, 1/1/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_6Q98_092 | 1/1/2806:2811, 1/1/2889:2892 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_49460.2 | |
| IL_6Q98_093 | 1/1/2838:2839, 1/1/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_4WF9_106 IL_16396.2 | |
| IL_6Q98_094 | 1/1/2843:2846, 1/1/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_6Q98_095 | 1/1/2847:2852, 1/1/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_6Q98_096 | 1/2/29:32, 1/2/552:554 | No text annotation Not in a motif group | geometric IL_4LFB_010 IL_95997.1 | |
| IL_6Q98_097 | 1/2/44:45, 1/2/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_6Q98_098 | 1/2/47:52, 1/2/359:361 | No text annotation Not in a motif group | geometric IL_5J7L_003 IL_11178.1 | |
| IL_6Q98_099 | 1/2/54:57, 1/2/355:357 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
| IL_6Q98_100 | 1/2/63:66, 1/2/103:104 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_6Q98_101 | 1/2/67:69, 1/2/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_6Q98_102 | 1/2/70:73, 1/2/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_6Q98_103 | 1/2/75:77, 1/2/92:95 | Single bulged G, near cWW Not in a motif group | homologous IL_5J7L_008 IL_82068.2 | |
| IL_6Q98_104 | 1/2/128:131, 1/2/231:233 | No text annotation Not in a motif group | ||
| IL_6Q98_105 | 1/2/131:136, 1/2/227:231 | No text annotation Not in a motif group | ||
| IL_6Q98_106 | 1/2/144:146, 1/2/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_51629.2 | |
| IL_6Q98_107 | 1/2/147:154, 1/2/167:175 | No text annotation Not in a motif group | ||
| IL_6Q98_108 | 1/2/203:206, 1/2/213:214 | Minor groove platform Not in a motif group | geometric IL_3IWN_005 IL_15052.1 | |
| IL_6Q98_109 | 1/2/242:247, 1/2/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_6Q98_110 | 1/2/249:253, 1/2/273:275 | No text annotation Not in a motif group | homologous IL_6CZR_124 IL_38684.1 | |
| IL_6Q98_111 | 1/2/292:293, 1/2/304:308 | C-loop Not in a motif group | homologous IL_6CZR_125 IL_37712.2 | |
| IL_6Q98_112 | 1/2/367:369, 1/2/392:393 | Single bulged U Not in a motif group | geometric IL_5J7L_017 IL_83039.13 | |
| IL_6Q98_113 | 1/2/371:375, 1/2/389:390 | C-loop Not in a motif group | geometric IL_6CZR_127 IL_75255.1 | |
| IL_6Q98_114 | 1/2/375:376, 1/2/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.2 | |
| IL_6Q98_115 | 1/2/409:416, 1/2/427:433 | No text annotation Not in a motif group | homologous IL_5J7L_020 IL_28026.1 | |
| IL_6Q98_116 | 1/2/440:442, 1/2/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_6Q98_117 | 1/2/446:450, 1/2/483:488 | tSH-tHW-tWW Not in a motif group | homologous IL_5J7L_022 IL_88269.3 | |
| IL_6Q98_118 | 1/2/450:455, 1/2/477:483 | No text annotation Not in a motif group | geometric IL_5J7L_023 IL_70801.1 | |
| IL_6Q98_119 | 1/2/504:511, 1/2/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_6Q98_120 | 1/2/515:521, 1/2/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_6Q98_121 | 1/2/569:575, 1/2/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_6Q98_122 | 1/2/580:584, 1/2/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_6Q98_123 | 1/2/594:596, 1/2/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_6Q98_124 | 1/2/597:598, 1/2/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_6Q98_125 | 1/2/605:612, 1/2/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
| IL_6Q98_126 | 1/2/654:655, 1/2/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4LFB_027 IL_50694.2 | |
| IL_6Q98_127 | 1/2/659:660, 1/2/745:747 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
| IL_6Q98_128 | 1/2/662:666, 1/2/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_6Q98_129 | 1/2/673:678, 1/2/712:717 | No text annotation Not in a motif group | geometric IL_6CZR_142 IL_04668.1 | |
| IL_6Q98_130 | 1/2/683:688, 1/2/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_6Q98_131 | 1/2/774:778, 1/2/804:805 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
| IL_6Q98_132 | 1/2/779:783, 1/2/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_6Q98_133 | 1/2/887:894, 1/2/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_6Q98_134 | 1/2/922:924, 1/2/1392:1395 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_002 IL_82068.2 | |
| IL_6Q98_135 | 1/2/925:927, 1/2/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_6Q98_136 | 1/2/933:936, 1/2/1379:1384 | No text annotation Not in a motif group | homologous IL_6CZR_149 IL_93211.1 | |
| IL_6Q98_137 | 1/2/1003:1007, 1/2/1022:1037 | No text annotation Not in a motif group | ||
| IL_6Q98_138 | 1/2/1048:1050, 1/2/1208:1209 | Single bulged U Not in a motif group | geometric IL_7KVT_002 IL_83039.13 | |
| IL_6Q98_139 | 1/2/1050:1056, 1/2/1204:1208 | No text annotation Not in a motif group | homologous IL_5J7L_047 NA | |
| IL_6Q98_140 | 1/2/1057:1058, 1/2/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_6Q98_141 | 1/2/1060:1061, 1/2/1195:1197 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.2 | |
| IL_6Q98_142 | 1/2/1061:1063, 1/2/1193:1195 | UU cWW Not in a motif group | geometric IL_1UN6_005 IL_95997.1 | |
| IL_6Q98_143 | 1/2/1123:1129, 1/2/1143:1150 | No text annotation Not in a motif group | ||
| IL_6Q98_144 | 1/2/1129:1132, 1/2/1142:1143 | Minor groove platform Not in a motif group | geometric IL_3RW6_003 IL_93353.1 | |
| IL_6Q98_145 | 1/2/1158:1161, 1/2/1175:1181 | No text annotation Not in a motif group | homologous IL_4LFB_050 IL_42032.1 | |
| IL_6Q98_146 | 1/2/1242:1244, 1/2/1293:1296 | No text annotation Not in a motif group | ||
| IL_6Q98_147 | 1/2/1255:1264, 1/2/1271:1282 | No text annotation Not in a motif group | ||
| IL_6Q98_148 | 1/2/1303:1308, 1/2/1329:1334 | No text annotation Not in a motif group | homologous IL_5J7L_057 IL_19954.2 | |
| IL_6Q98_149 | 1/2/1401:1404, 1/2/1497:1501 | No text annotation Not in a motif group | homologous IL_5J7L_059 NA | |
| IL_6Q98_150 | 1/2/1405:1409, 1/2/1491:1496 | No text annotation Not in a motif group | ||
| IL_6Q98_151 | 1/2/1411:1415, 1/2/1485:1489 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_6Q98_152 | 1/2/1416:1419, 1/2/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_6Q98_153 | 1/2/1421:1425, 1/2/1476:1479 | No text annotation Not in a motif group | ||
| IL_6Q98_154 | 1/2/1425:1429, 1/2/1471:1476 | No text annotation Not in a motif group | ||
| IL_6Q98_155 | 1/2/1429:1435, 1/2/1466:1471 | No text annotation Not in a motif group | ||
| IL_6Q98_156 | 1/2/1440:1442, 1/2/1460:1461 | Minor groove platform Not in a motif group | homologous IL_5J7L_064 IL_42622.2 | |
| IL_6Q98_157 | 1/2/1445:1448, 1/2/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 | |
| IL_6Q98_158 | 1/3/1:2, 1/3/118:120 | No text annotation Not in a motif group | ||
| IL_6Q98_159 | 1/3/17:19, 1/3/64:67 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5ML7_010 IL_82068.2 | |
| IL_6Q98_160 | 1/3/23:28, 1/3/56:60 | No text annotation Not in a motif group | homologous IL_7A0S_103 IL_18472.2 | |
| IL_6Q98_161 | 1/3/30:32, 1/3/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_6Q98_162 | 1/3/71:79, 1/3/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 | |
| IL_6Q98_163 | 1/4/28:36, 1/4/318:325 | No text annotation Not in a motif group | ||
| IL_6Q98_164 | 1/4/37:40, 1/4/314:317 | No text annotation Not in a motif group | ||
| IL_6Q98_165 | 1/4/113:114, 1/4/130:132 | No text annotation Not in a motif group | ||
| IL_6Q98_166 | 1/4/143:145, 1/4/170:176 | No text annotation Not in a motif group | ||
| IL_6Q98_167 | 1/4/202:209, 1/4/220:227 | No text annotation Not in a motif group | ||
| IL_6Q98_168 | 1/4/257:259, 1/4/272:273 | Single bulged A Not in a motif group | geometric IL_4WF9_098 IL_69996.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6Q98_001 | 1/1/56:57, 1/1/70:76, 1/1/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_6Q98_002 | 1/1/683:689, 1/1/773:775, 1/1/791:794 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
| J3_6Q98_003 | 1/1/698:700, 1/1/732:736, 1/1/760:763 | No text annotation Not in a motif group | homologous J3_5J7L_039 NA | |
| J3_6Q98_004 | 1/1/1055:1058, 1/1/1080:1087, 1/1/1102:1104 | No text annotation Not in a motif group | ||
| J3_6Q98_005 | 1/1/1298:1303, 1/1/1625:1627, 1/1/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_6Q98_006 | 1/1/1306:1309, 1/1/1605:1611, 1/1/1620:1623 | No text annotation Not in a motif group | ||
| J3_6Q98_007 | 1/1/2091:2093, 1/1/2196:2200, 1/1/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_6Q98_008 | 1/1/2295:2299, 1/1/2317:2323, 1/1/2332:2337 | No text annotation Not in a motif group | ||
| J3_6Q98_009 | 1/1/2517:2520, 1/1/2545:2547, 1/1/2561:2567 | No text annotation Not in a motif group | homologous J3_4WF9_009 NA | |
| J3_6Q98_010 | 1/1/2789:2791, 1/1/2805:2806, 1/1/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_6Q98_011 | 1/2/46:47, 1/2/361:367, 1/2/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_6Q98_012 | 1/2/586:588, 1/2/651:654, 1/2/754:755 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA | |
| J3_6Q98_013 | 1/2/672:673, 1/2/717:725, 1/2/732:734 | No text annotation Not in a motif group | homologous J3_5J7L_003 NA | |
| J3_6Q98_014 | 1/2/826:829, 1/2/857:861, 1/2/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_6Q98_015 | 1/2/941:948, 1/2/1233:1237, 1/2/1337:1342 | No text annotation Not in a motif group | ||
| J3_6Q98_016 | 1/2/952:962, 1/2/973:984, 1/2/1221:1229 | No text annotation Not in a motif group | ||
| J3_6Q98_017 | 1/2/990:999, 1/2/1041:1047, 1/2/1210:1215 | No text annotation Not in a motif group | ||
| J3_6Q98_019 | 1/2/1073:1074, 1/2/1083:1087, 1/2/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_6Q98_020 | 1/2/1114:1120, 1/2/1153:1158, 1/2/1181:1186 | No text annotation Not in a motif group | ||
| J3_6Q98_021 | 1/2/1237:1242, 1/2/1296:1303, 1/2/1334:1337 | No text annotation Not in a motif group | ||
| J3_6Q98_022 | 1/3/10:16, 1/3/68:70, 1/3/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6Q98_018 | No text annotation |
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