Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V7K_0011/AA/59:68No text annotation
homologous
HL_7RQB_001
NA
HL_4V7K_0021/AA/87:95No text annotation
homologous
HL_7RQB_002
NA
HL_4V7K_0031/AA/123:128No text annotation
homologous
HL_7RQB_003
NA
HL_4V7K_0041/AA/139:142ANo text annotation
homologous
HL_7RQB_004
NA
HL_4V7K_0051/AA/154A:171No text annotation
HL_4V7K_0061/AA/194:201No text annotation
homologous
HL_7RQB_006
NA
HL_4V7K_0071/AA/225:230No text annotation
homologous
HL_7RQB_007
NA
HL_4V7K_0081/AA/246:252No text annotation
homologous
HL_7RQB_008
NA
HL_4V7K_0091/AA/271J:271MNo text annotation
homologous
HL_7RQB_009
NA
HL_4V7K_0101/AA/305:312No text annotation
homologous
HL_7RQB_010
NA
HL_4V7K_0111/AA/319:323No text annotation
homologous
HL_7RQB_011
NA
HL_4V7K_0121/AA/327:335T-loop with unstacked turn
homologous
HL_7RQB_012
NA
HL_4V7K_2201/AA/383:391No text annotation
HL_4V7K_0141/AA/410:417No text annotation
homologous
HL_7RQB_014
NA
HL_4V7K_0151/AA/462:467GNRA
homologous
HL_5J7L_147
HL_37824.7
HL_4V7K_0161/AA/487:493GNRA
homologous
HL_7RQB_016
NA
HL_4V7K_0171/AA/543:549No text annotation
homologous
HL_7RQB_017
NA
HL_4V7K_0181/AA/566:575No text annotation
homologous
HL_7RQB_018
NA
HL_4V7K_0191/AA/612:615No text annotation
homologous
HL_7RQB_019
NA
HL_4V7K_0201/AA/629:634GNRA
homologous
HL_7RQB_020
NA
HL_4V7K_0211/AA/641:647No text annotation
homologous
HL_7RQB_021
NA
HL_4V7K_0231/AA/712:719No text annotation
homologous
HL_7RQB_022
NA
HL_4V7K_0241/AA/744:753No text annotation
homologous
HL_7RQB_023
NA
HL_4V7K_0251/AA/779:785No text annotation
homologous
HL_7A0S_023
HL_53890.2
HL_4V7K_0261/AA/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_4V7K_2211/AA/883:893No text annotation
geometric
HL_8C3A_015
NA
HL_4V7K_0271/AA/884:892No text annotation
homologous
HL_9DFE_024
HL_87553.1
HL_4V7K_0281/AA/955:962GNRA
homologous
HL_7RQB_027
NA
HL_4V7K_0291/AA/978:985No text annotation
homologous
HL_7RQB_028
NA
HL_4V7K_0301/AA/1043:1112No text annotation
HL_4V7K_0311/AA/1171:1178No text annotation
HL_4V7K_0321/AA/1222:1227GNRA
homologous
HL_7RQB_032
NA
HL_4V7K_0331/AA/1281:1289No text annotation
homologous
HL_7RQB_033
NA
HL_4V7K_0341/AA/1324:1330No text annotation
homologous
HL_7RQB_034
NA
HL_4V7K_0351/AA/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.7
HL_4V7K_0361/AA/1389:1398No text annotation
homologous
HL_7RQB_036
NA
HL_4V7K_0371/AA/1450A:1461Pseudoknot
homologous
HL_7A0S_036
HL_93135.1
HL_4V7K_0381/AA/1492:1498No text annotation
HL_4V7K_0391/AA/1531:1538GNRA with extra cWW
geometric
HL_4WF9_053
HL_04259.3
HL_4V7K_0401/AA/1565:1568Mini UNCG
homologous
HL_7A0S_039
HL_48778.2
HL_4V7K_0411/AA/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_4V7K_0421/AA/1631:1635No text annotation
homologous
HL_7RQB_041
NA
HL_4V7K_0431/AA/1691:1696No text annotation
geometric
HL_7RQB_042
NA
HL_4V7K_2401/AA/1719:1743No text annotation
HL_4V7K_0451/AA/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_4V7K_0461/AA/1777:1787No text annotation
homologous
HL_4WF9_043
HL_01962.2
HL_4V7K_0471/AA/1806:1811GNRA
homologous
HL_7RQB_046
NA
HL_4V7K_2221/AA/1864:1878GNRA
homologous
HL_9DFE_045
HL_37824.7
HL_4V7K_0491/AA/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_4V7K_0501/AA/1949:1957No text annotation
homologous
HL_7RQB_049
NA
HL_4V7K_0511/AA/2027:2036No text annotation
homologous
HL_7RQB_050
NA
HL_4V7K_2411/AA/2144:2147No text annotation
HL_4V7K_0531/AA/2205:2219No text annotation
geometric
HL_6U8D_003
HL_32346.4
HL_4V7K_0541/AA/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_4V7K_0551/AA/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_4V7K_0561/AA/2303:2313No text annotation
homologous
HL_4WF9_051
NA
HL_4V7K_0571/AA/2324:2331Pseudoknot geometry
homologous
HL_7RQB_056
NA
HL_4V7K_0581/AA/2355:2362No text annotation
homologous
HL_7RQB_057
NA
HL_4V7K_0591/AA/2374:2379GNRA
homologous
HL_5J7L_191
HL_37824.7
HL_4V7K_0601/AA/2404:2413No text annotation
homologous
HL_7RQB_059
NA
HL_4V7K_0611/AA/2471:2479No text annotation
homologous
HL_7RQB_060
NA
HL_4V7K_0621/AA/2528:2535No text annotation
homologous
HL_7RQB_061
NA
HL_4V7K_0631/AA/2551:2557No text annotation
homologous
HL_4WF9_058
HL_30068.2
HL_4V7K_0641/AA/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_4V7K_0651/AA/2658:2663GNRA
homologous
HL_5J7L_197
HL_37824.7
HL_4V7K_0661/AA/2701:2706No text annotation
homologous
HL_7RQB_065
NA
HL_4V7K_0671/AA/2745:2759No text annotation
homologous
HL_7RQB_066
NA
HL_4V7K_0691/AA/2819:2827No text annotation
homologous
HL_7RQB_068
NA
HL_4V7K_0701/AA/2856:2861GNRA
homologous
HL_7RQB_069
NA
HL_4V7K_0711/AB/38:44No text annotation
homologous
HL_7RQB_070
NA
HL_4V7K_0721/AB/86:91GNRA
homologous
HL_7A0S_070
HL_37824.7
HL_4V7K_0731/Aa/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_4V7K_0741/Aa/77:92No text annotation
HL_4V7K_0751/Aa/158:163GNRA
homologous
HL_4LFB_003
HL_37824.7
HL_4V7K_0761/Aa/189C:189HNo text annotation
homologous
HL_6CZR_075
NA
HL_4V7K_2251/Aa/201:216Mini UNCG
homologous
HL_4LFB_005
HL_48778.2
HL_4V7K_0781/Aa/259:267GNRA related
homologous
HL_4LFB_006
HL_84299.4
HL_4V7K_0791/Aa/296:301GNRA
homologous
HL_5J7L_007
HL_37824.7
HL_4V7K_0801/Aa/320:333No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_4V7K_0811/Aa/342:347UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_4V7K_0821/Aa/379:384GNRA
homologous
HL_4LFB_010
HL_37824.7
HL_4V7K_0831/Aa/419:424UNCG
homologous
HL_5J7L_011
HL_34617.5
HL_4V7K_0841/Aa/458:473GNRA
homologous
HL_4LFB_012
HL_37824.7
HL_4V7K_0851/Aa/522:527No text annotation
geometric
HL_5J7L_143
HL_75660.5
HL_4V7K_0861/Aa/617:623No text annotation
homologous
HL_4LFB_014
HL_10453.3
HL_4V7K_0871/Aa/689:698No text annotation
homologous
HL_4LFB_015
HL_75293.5
HL_4V7K_0881/Aa/726:731GNRA
homologous
HL_4LFB_016
HL_37824.7
HL_4V7K_0891/Aa/786:796No text annotation
homologous
HL_4LFB_017
HL_75293.5
HL_4V7K_2271/Aa/837:849No text annotation
geometric
HL_4V9F_019
HL_80922.2
HL_4V7K_0901/Aa/838:848Mini UNCG
homologous
HL_4LFB_018
HL_48778.2
HL_4V7K_0911/Aa/862:867GNRA
homologous
HL_4LFB_019
HL_37824.7
HL_4V7K_0921/Aa/897:902GNRA
homologous
HL_4LFB_020
HL_37824.7
HL_4V7K_0931/Aa/963:972No text annotation
homologous
HL_4LFB_021
HL_50779.4
HL_4V7K_0941/Aa/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.7
HL_4V7K_0951/Aa/1076:1081GNRA
homologous
HL_4LFB_024
HL_37824.7
HL_4V7K_0961/Aa/1089:1096T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_4V7K_0971/Aa/1128:1143No text annotation
HL_4V7K_0981/Aa/1165:1171GNRA
homologous
HL_4LFB_027
HL_37824.7
HL_4V7K_0991/Aa/1265:1270GNRA
homologous
HL_4LFB_028
HL_37824.7
HL_4V7K_1001/Aa/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_4V7K_1011/Aa/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_4V7K_1021/Aa/1445:1457UNCG
homologous
HL_5J7L_030
HL_34617.5
HL_4V7K_1031/Aa/1515:1520GNRA
homologous
HL_4LFB_032
HL_37824.7
HL_4V7K_1041/Av/13:22tRNA D-loop
homologous
HL_6CFJ_106
HL_93616.2
HL_4V7K_2421/Av/31:39tRNA anticodon loop
homologous
HL_5E81_212
HL_06059.6
HL_4V7K_1061/Av/53:61T-loop with 2 stacked bulged bases
homologous
HL_4YCO_003
HL_28252.8
HL_4V7K_1071/Aw/13:22tRNA D-loop
homologous
HL_4V9Q_213
HL_93616.2
HL_4V7K_1081/Aw/30:40No text annotation
homologous
HL_4V7M_039
HL_36684.4
HL_4V7K_1091/Aw/53:61T-loop with 2 stacked bulged bases
homologous
HL_4YCO_003
HL_28252.8
HL_4V7K_1101/BA/59:68No text annotation
homologous
HL_7RQB_001
NA
HL_4V7K_1111/BA/87:95No text annotation
homologous
HL_7RQB_002
NA
HL_4V7K_1121/BA/123:128No text annotation
homologous
HL_7RQB_003
NA
HL_4V7K_1131/BA/139:142ANo text annotation
homologous
HL_7RQB_004
NA
HL_4V7K_1141/BA/154A:171No text annotation
HL_4V7K_1151/BA/194:201No text annotation
geometric
HL_7RQB_006
NA
HL_4V7K_1161/BA/225:230No text annotation
homologous
HL_7RQB_007
NA
HL_4V7K_1171/BA/246:252No text annotation
homologous
HL_7RQB_008
NA
HL_4V7K_1181/BA/271J:271MNo text annotation
geometric
HL_6U8D_003
HL_32346.4
HL_4V7K_1191/BA/305:312No text annotation
homologous
HL_7RQB_010
NA
HL_4V7K_1201/BA/319:323No text annotation
homologous
HL_7RQB_011
NA
HL_4V7K_1211/BA/327:335T-loop with unstacked turn
homologous
HL_7RQB_012
NA
HL_4V7K_2311/BA/383:391No text annotation
HL_4V7K_1231/BA/410:417No text annotation
homologous
HL_7RQB_014
NA
HL_4V7K_1241/BA/462:467GNRA
homologous
HL_5J7L_147
HL_37824.7
HL_4V7K_1251/BA/487:493GNRA
homologous
HL_7RQB_016
NA
HL_4V7K_1261/BA/543:549No text annotation
homologous
HL_7RQB_017
NA
HL_4V7K_1271/BA/566:575No text annotation
geometric
HL_7RQB_018
NA
HL_4V7K_1281/BA/612:615No text annotation
homologous
HL_7RQB_019
NA
HL_4V7K_1291/BA/629:634GNRA
homologous
HL_7RQB_020
NA
HL_4V7K_1301/BA/641:647No text annotation
homologous
HL_7RQB_021
NA
HL_4V7K_1321/BA/712:719No text annotation
homologous
HL_7RQB_022
NA
HL_4V7K_1331/BA/744:753No text annotation
homologous
HL_7RQB_023
NA
HL_4V7K_1341/BA/779:785No text annotation
homologous
HL_7A0S_023
HL_53890.2
HL_4V7K_1351/BA/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_4V7K_1361/BA/884:892No text annotation
geometric
HL_5J7L_151
HL_80922.2
HL_4V7K_1371/BA/955:962GNRA
homologous
HL_7RQB_027
NA
HL_4V7K_1381/BA/978:985No text annotation
homologous
HL_7RQB_028
NA
HL_4V7K_1391/BA/1043:1112No text annotation
HL_4V7K_1401/BA/1171:1178No text annotation
HL_4V7K_1411/BA/1222:1227GNRA
homologous
HL_7RQB_032
NA
HL_4V7K_1421/BA/1281:1289No text annotation
homologous
HL_7RQB_033
NA
HL_4V7K_1431/BA/1324:1330No text annotation
homologous
HL_7RQB_034
NA
HL_4V7K_1441/BA/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.7
HL_4V7K_1451/BA/1389:1398No text annotation
homologous
HL_7RQB_036
NA
HL_4V7K_1461/BA/1450A:1461Pseudoknot
homologous
HL_7A0S_036
HL_93135.1
HL_4V7K_1471/BA/1492:1498No text annotation
HL_4V7K_1481/BA/1531:1538GNRA with extra cWW
geometric
HL_4WF9_053
HL_04259.3
HL_4V7K_1491/BA/1565:1568Mini UNCG
homologous
HL_7A0S_039
HL_48778.2
HL_4V7K_1501/BA/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_4V7K_1511/BA/1631:1635No text annotation
homologous
HL_7RQB_041
NA
HL_4V7K_1521/BA/1691:1696No text annotation
homologous
HL_7RQB_042
NA
HL_4V7K_2431/BA/1719:1743No text annotation
HL_4V7K_1541/BA/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_4V7K_1551/BA/1777:1787No text annotation
homologous
HL_4WF9_043
HL_01962.2
HL_4V7K_1561/BA/1806:1811GNRA
homologous
HL_7RQB_046
NA
HL_4V7K_2331/BA/1864:1878GNRA
homologous
HL_9DFE_045
HL_37824.7
HL_4V7K_1581/BA/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_4V7K_1591/BA/1949:1957No text annotation
homologous
HL_7RQB_049
NA
HL_4V7K_1601/BA/2027:2036No text annotation
homologous
HL_7RQB_050
NA
HL_4V7K_2441/BA/2144:2147No text annotation
HL_4V7K_1621/BA/2205:2219No text annotation
geometric
HL_6U8D_003
HL_32346.4
HL_4V7K_1631/BA/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_4V7K_1641/BA/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_4V7K_1651/BA/2303:2313No text annotation
homologous
HL_4WF9_051
NA
HL_4V7K_1661/BA/2324:2331Pseudoknot geometry
homologous
HL_7RQB_056
NA
HL_4V7K_1671/BA/2355:2362No text annotation
homologous
HL_7RQB_057
NA
HL_4V7K_1681/BA/2374:2379GNRA
homologous
HL_5J7L_191
HL_37824.7
HL_4V7K_1691/BA/2404:2413No text annotation
homologous
HL_7RQB_059
NA
HL_4V7K_1701/BA/2471:2479No text annotation
homologous
HL_7RQB_060
NA
HL_4V7K_1711/BA/2528:2535No text annotation
homologous
HL_7RQB_061
NA
HL_4V7K_1721/BA/2551:2557No text annotation
homologous
HL_4WF9_058
HL_30068.2
HL_4V7K_1731/BA/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_4V7K_1741/BA/2658:2663GNRA
geometric
HL_5B2P_001
HL_37824.7
HL_4V7K_1751/BA/2701:2706No text annotation
homologous
HL_7RQB_065
NA
HL_4V7K_1761/BA/2745:2759No text annotation
homologous
HL_7RQB_066
NA
HL_4V7K_1771/BA/2792:2804No text annotation
HL_4V7K_1781/BA/2819:2827No text annotation
homologous
HL_7RQB_068
NA
HL_4V7K_1791/BA/2856:2861GNRA
homologous
HL_7RQB_069
NA
HL_4V7K_1801/BB/38:44No text annotation
geometric
HL_7RQB_070
NA
HL_4V7K_1811/BB/86:91GNRA
homologous
HL_7A0S_070
HL_37824.7
HL_4V7K_1821/Ba/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_4V7K_1831/Ba/77:92No text annotation
HL_4V7K_1841/Ba/158:163GNRA
homologous
HL_4LFB_003
HL_37824.7
HL_4V7K_1851/Ba/189C:189HNo text annotation
homologous
HL_6CZR_075
NA
HL_4V7K_2361/Ba/201:216Mini UNCG
homologous
HL_4LFB_005
HL_48778.2
HL_4V7K_1871/Ba/259:267GNRA related
homologous
HL_4LFB_006
HL_84299.4
HL_4V7K_1881/Ba/296:301GNRA
homologous
HL_5J7L_007
HL_37824.7
HL_4V7K_1891/Ba/320:333No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_4V7K_1901/Ba/342:347UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_4V7K_2371/Ba/377:386No text annotation
geometric
HL_8KAL_008
NA
HL_4V7K_1911/Ba/379:384GNRA
homologous
HL_4LFB_010
HL_37824.7
HL_4V7K_1921/Ba/419:424UNCG
homologous
HL_5J7L_011
HL_34617.5
HL_4V7K_1931/Ba/458:473GNRA
homologous
HL_4LFB_012
HL_37824.7
HL_4V7K_1941/Ba/522:527No text annotation
geometric
HL_5J7L_143
HL_75660.5
HL_4V7K_1951/Ba/617:623No text annotation
homologous
HL_4LFB_014
HL_10453.3
HL_4V7K_1961/Ba/689:698No text annotation
homologous
HL_4LFB_015
HL_75293.5
HL_4V7K_1971/Ba/726:731GNRA
homologous
HL_4LFB_016
HL_37824.7
HL_4V7K_1981/Ba/786:796No text annotation
homologous
HL_4LFB_017
HL_75293.5
HL_4V7K_2381/Ba/837:849No text annotation
geometric
HL_4V9F_019
HL_80922.2
HL_4V7K_1991/Ba/838:848Mini UNCG
homologous
HL_4LFB_018
HL_48778.2
HL_4V7K_2001/Ba/862:867GNRA
homologous
HL_4LFB_019
HL_37824.7
HL_4V7K_2011/Ba/897:902GNRA
homologous
HL_4LFB_020
HL_37824.7
HL_4V7K_2021/Ba/963:972No text annotation
homologous
HL_4LFB_021
HL_50779.4
HL_4V7K_2031/Ba/1012:1017GNRA
geometric
HL_4LFB_022
HL_37824.7
HL_4V7K_2041/Ba/1076:1081GNRA
homologous
HL_4LFB_024
HL_37824.7
HL_4V7K_2051/Ba/1089:1096T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_4V7K_2061/Ba/1128:1143No text annotation
HL_4V7K_2071/Ba/1165:1171GNRA
homologous
HL_4LFB_027
HL_37824.7
HL_4V7K_2081/Ba/1265:1270GNRA
homologous
HL_4LFB_028
HL_37824.7
HL_4V7K_2091/Ba/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_4V7K_2101/Ba/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_4V7K_2111/Ba/1445:1457UNCG
homologous
HL_5J7L_030
HL_34617.5
HL_4V7K_2121/Ba/1515:1520GNRA
homologous
HL_4LFB_032
HL_37824.7
HL_4V7K_2131/Bv/13:22tRNA D-loop
homologous
HL_5E81_211
HL_93616.2
HL_4V7K_2141/Bv/31:39tRNA anticodon loop
homologous
HL_5E81_212
HL_06059.6
HL_4V7K_2151/Bv/53:61T-loop with 2 stacked bulged bases
homologous
HL_4V9Q_215
HL_28252.8
HL_4V7K_2161/Bw/12:23No text annotation
homologous
HL_1SER_001
NA
HL_4V7K_2451/Bw/31:39tRNA anticodon loop
homologous
HL_1U0B_002
HL_06059.6
HL_4V7K_2181/Bw/53:61T-loop with 2 stacked bulged bases
homologous
HL_1QTQ_003
HL_28252.8

Problematic loops

#loop idProblemSequence
HL_4V7K_219No text annotation
HL_4V7K_013No text annotation
HL_4V7K_022No text annotation
HL_4V7K_044No text annotation
HL_4V7K_048GNRA with extra cWW
HL_4V7K_052No text annotation
HL_4V7K_223No text annotation
HL_4V7K_068No text annotation
HL_4V7K_224No text annotation
HL_4V7K_077No text annotation
HL_4V7K_226No text annotation
HL_4V7K_228tRNA anticodon loop
HL_4V7K_105No text annotation
HL_4V7K_229No text annotation
HL_4V7K_230No text annotation
HL_4V7K_122No text annotation
HL_4V7K_131No text annotation
HL_4V7K_232No text annotation
HL_4V7K_153No text annotation
HL_4V7K_157GNRA with extra cWW
HL_4V7K_161No text annotation
HL_4V7K_234No text annotation
HL_4V7K_235No text annotation
HL_4V7K_186No text annotation
HL_4V7K_239tRNA anticodon loop
HL_4V7K_217No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V7K_0011/AA/24:30,
1/AA/510:516
Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
NA
IL_4V7K_0021/AA/36:37,
1/AA/442:444
Single bulged A
homologous
IL_7RQB_002
NA
IL_4V7K_0031/AA/42:43,
1/AA/434:436
Minor groove platform
homologous
IL_7RQB_003
NA
IL_4V7K_0041/AA/81:85,
1/AA/97:105
Kink-turn
homologous
IL_7RQB_004
NA
IL_4V7K_0051/AA/183:184,
1/AA/212:214
Single stack bend
homologous
IL_7RQB_005
NA
IL_4V7K_0061/AA/188:194,
1/AA/201:208
8x7 Sarcin-Ricin; G-bulge
geometric
IL_7RQB_006
NA
IL_4V7K_0071/AA/239:245,
1/AA/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
NA
IL_4V7K_0081/AA/271I:271J,
1/AA/271M:271O
Single bulged U
geometric
IL_5TBW_125
NA
IL_4V7K_4011/AA/272D:272E,
1/AA/363E:364
Major groove platform
homologous
IL_9DFE_008
IL_48076.6
IL_4V7K_0101/AA/272J:279,
1/AA/361:363
No text annotation
IL_4V7K_0111/AA/280:284,
1/AA/357:360
tSH-tHW
homologous
IL_7RQB_011
NA
IL_4V7K_0121/AA/288:290,
1/AA/350:353
Isolated tHS basepair with bulges
homologous
IL_7RQB_012
NA
IL_4V7K_0131/AA/293:295,
1/AA/343:347
No text annotation
homologous
IL_7RQB_013
NA
IL_4V7K_0151/AA/481:484,
1/AA/496:509
No text annotation
homologous
IL_7RQB_014
NA
IL_4V7K_0161/AA/564:566,
1/AA/575:577
Isolated non-canonical cWW pair
geometric
IL_4WF9_017
IL_07785.1
IL_4V7K_0171/AA/606:610,
1/AA/618:622
AAA cross-strand stack
homologous
IL_4WF9_019
IL_66798.2
IL_4V7K_0181/AA/672:674,
1/AA/806:808
No text annotation
homologous
IL_7RQB_017
NA
IL_4V7K_0191/AA/674:678,
1/AA/799:806
tHW-tHW cross-strand stack
geometric
IL_4WF9_021
IL_54041.2
IL_4V7K_0201/AA/697:698,
1/AA/763:765
Single bulged A
geometric
IL_7RQB_019
NA
IL_4V7K_0211/AA/702:703,
1/AA/728:730
Single bulged G
homologous
IL_7RQB_020
NA
IL_4V7K_0221/AA/703:707,
1/AA/724:728
Triple sheared
geometric
IL_7RQB_021
NA
IL_4V7K_0231/AA/738:741,
1/AA/756:758
Major groove platform with extra cWW
homologous
IL_7RQB_022
NA
IL_4V7K_0241/AA/775:777,
1/AA/787:791
Multiple bulged bases
geometric
IL_5J7L_265
IL_06549.2
IL_4V7K_0251/AA/837:838,
1/AA/940:942
Single stack bend
homologous
IL_4WF9_028
IL_90729.1
IL_4V7K_0261/AA/844:846,
1/AA/931:934
Intercalated cWW
geometric
IL_7RQB_025
NA
IL_4V7K_3671/AA/844:850,
1/AA/927:934
No text annotation
homologous
IL_9DFE_024
IL_68243.1
IL_4V7K_0271/AA/846:850,
1/AA/927:931
No text annotation
homologous
IL_7RQB_026
NA
IL_4V7K_0281/AA/858:862,
1/AA/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7RQB_027
NA
IL_4V7K_0291/AA/862:863,
1/AA/913:915
Minor groove platform
homologous
IL_7A0S_028
IL_51454.3
IL_4V7K_0301/AA/864:868,
1/AA/909:912
C-loop with bulged stacked A's
homologous
IL_7RQB_029
NA
IL_4V7K_3681/AA/875:877,
1/AA/899:902
No text annotation
homologous
IL_9DFE_030
IL_90351.1
IL_4V7K_3691/AA/877:879,
1/AA/898:899
Minor groove platform
homologous
IL_9DFE_031
IL_51454.3
IL_4V7K_0331/AA/880:881,
1/AA/895:897
Single bulged A
geometric
IL_5WWT_001
IL_31462.6
IL_4V7K_0351/AA/952:954,
1/AA/963:965
No text annotation
homologous
IL_7RQB_034
NA
IL_4V7K_0361/AA/994:996,
1/AA/1159:1160
Single bulged C
homologous
IL_7RQB_035
NA
IL_4V7K_0371/AA/998:1002,
1/AA/1153:1157
UAA/GAN
homologous
IL_7RQB_036
NA
IL_4V7K_0381/AA/1004:1011,
1/AA/1150:1151
SSU/LSU pseudoknot
geometric
IL_7RQB_037
NA
IL_4V7K_0391/AA/1011:1013,
1/AA/1149:1150
Single bulged U
homologous
IL_7RQB_038
NA
IL_4V7K_0401/AA/1018:1024,
1/AA/1140:1144
Kink-turn related
geometric
IL_4WF9_039
IL_57188.5
IL_4V7K_0411/AA/1024:1030,
1/AA/1124:1140
No text annotation
geometric
IL_7RQB_040
NA
IL_4V7K_0421/AA/1031:1034,
1/AA/1121:1123
Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_4V7K_0431/AA/1196:1198,
1/AA/1247:1250
Isolated cWS basepair
homologous
IL_7RQB_045
NA
IL_4V7K_0441/AA/1202:1206,
1/AA/1240:1243
No text annotation
homologous
IL_7RQB_046
NA
IL_4V7K_0451/AA/1208:1215,
1/AA/1234:1238
Kink-turn
homologous
IL_7RQB_047
NA
IL_4V7K_0461/AA/1219:1221,
1/AA/1229:1230
Single bulged A
homologous
IL_7RQB_048
NA
IL_4V7K_0471/AA/1262:1269,
1/AA/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_049
NA
IL_4V7K_0481/AA/1310:1313,
1/AA/1603:1604
Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_4V7K_0491/AA/1319:1323,
1/AA/1331:1333
C-loop
homologous
IL_7RQB_051
NA
IL_4V7K_0501/AA/1351:1355,
1/AA/1376:1380
UAA/GAN
homologous
IL_7RQB_052
NA
IL_4V7K_0511/AA/1357:1361,
1/AA/1370:1374
tSH-tHW-tHS
homologous
IL_7RQB_053
NA
IL_4V7K_0521/AA/1415:1416,
1/AA/1582:1587
No text annotation
homologous
IL_7RQB_054
NA
IL_4V7K_0531/AA/1417:1421,
1/AA/1577:1581
UAA/GAN
homologous
IL_5J7L_295
IL_38507.2
IL_4V7K_0541/AA/1433:1435,
1/AA/1557:1560
Isolated tWW turn
homologous
IL_7RQB_056
NA
IL_4V7K_0551/AA/1437:1440,
1/AA/1551:1555
tSH-tHW
homologous
IL_7RQB_057
NA
IL_4V7K_0561/AA/1448:1450,
1/AA/1462:1463
Single stack bend
homologous
IL_7RQB_058
NA
IL_4V7K_0571/AA/1469:1473,
1/AA/1518:1523
UAA/GAN
homologous
IL_7RQB_060
NA
IL_4V7K_0581/AA/1481:1482,
1/AA/1506:1510
No text annotation
homologous
IL_7RQB_061
NA
IL_4V7K_3701/AA/1487:1491,
1/AA/1499:1502
No text annotation
IL_4V7K_0601/AA/1488:1491,
1/AA/1499:1501
Isolated non-canonical cWW with bulges
geometric
IL_5ML7_010
IL_07785.1
IL_4V7K_0611/AA/1526:1529,
1/AA/1540:1546
No text annotation
homologous
IL_7RQB_063
NA
IL_4V7K_3711/AA/1526:1531,
1/AA/1538:1546
No text annotation
IL_4V7K_0621/AA/1651:1656,
1/AA/2004:2006
No text annotation
homologous
IL_7RQB_064
NA
IL_4V7K_0631/AA/1663:1665,
1/AA/1995:1997
Isolated tWW turn
homologous
IL_7RQB_065
NA
IL_4V7K_0641/AA/1666:1669,
1/AA/1993:1994
Major groove platform; stack outside cWW
geometric
IL_5J7L_306
IL_50694.7
IL_4V7K_3721/AA/1666:1674,
1/AA/1990:1994
No text annotation
homologous
IL_9DFE_066
IL_22854.4
IL_4V7K_0651/AA/1669:1674,
1/AA/1990:1993
Intercalated tWH
homologous
IL_7RQB_067
NA
IL_4V7K_0661/AA/1686:1691,
1/AA/1696:1702
tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA
IL_4V7K_0671/AA/1770:1771,
1/AA/1980:1982
Single bulged A
homologous
IL_7RQB_069
NA
IL_4V7K_0681/AA/1798:1804,
1/AA/1813:1821
Kink-turn related
homologous
IL_7RQB_070
NA
IL_4V7K_0691/AA/1837:1840,
1/AA/1902:1903
Minor groove platform, major groove intercalation
homologous
IL_7RQB_071
NA
IL_4V7K_0701/AA/1841:1842,
1/AA/1898:1901
Major groove intercalation
homologous
IL_5J7L_315
IL_82107.4
IL_4V7K_0711/AA/1846:1849,
1/AA/1893:1894
Minor groove platform
homologous
IL_7RQB_073
NA
IL_4V7K_0721/AA/1851:1855,
1/AA/1887:1891
UAA/GAN with extra pair
homologous
IL_7RQB_074
NA
IL_4V7K_0731/AA/1856:1860,
1/AA/1882:1886
Triple sheared
homologous
IL_7RQB_075
NA
IL_4V7K_0741/AA/1933:1934,
1/AA/1964:1967
Bulged stacked bases
homologous
IL_7RQB_076
NA
IL_4V7K_0751/AA/1934:1945,
1/AA/1961:1964
No text annotation
geometric
IL_4WF9_077
IL_42218.2
IL_4V7K_0761/AA/2050:2052,
1/AA/2617:2618
Major groove platform
homologous
IL_7RQB_078
NA
IL_4V7K_0771/AA/2067:2069,
1/AA/2442:2443
Single bulged U
homologous
IL_7A0S_075
IL_89505.4
IL_4V7K_0781/AA/2070:2071,
1/AA/2438:2441
Minor groove platform
homologous
IL_7RQB_081
NA
IL_4V7K_0791/AA/2081:2083,
1/AA/2236:2239
Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA
IL_4V7K_0801/AA/2085:2087,
1/AA/2232:2234
No text annotation
homologous
IL_7RQB_083
NA
IL_4V7K_4021/AA/2108:2121,
1/AA/2177:2181
No text annotation
IL_4V7K_3741/AA/2124:2127,
1/AA/2161:2174
No text annotation
homologous
IL_3U4M_003
IL_75283.2
IL_4V7K_0841/AA/2129:2136,
1/AA/2155:2159
Kink-turn
geometric
IL_5J7L_330
IL_70923.9
IL_4V7K_4031/AA/2129:2139,
1/AA/2152:2159
No text annotation
IL_4V7K_0861/AA/2297:2299,
1/AA/2317:2321
Isolated tHS basepair with bulges
geometric
IL_7RQB_088
NA
IL_4V7K_0871/AA/2350:2353,
1/AA/2364:2367
Double sheared
homologous
IL_7RQB_089
NA
IL_4V7K_0881/AA/2401:2403,
1/AA/2414:2415
Single bulged U
homologous
IL_5J7L_334
IL_89505.4
IL_4V7K_0891/AA/2453:2454,
1/AA/2498:2500
Single stack bend
homologous
IL_7RQB_091
NA
IL_4V7K_0901/AA/2454:2455,
1/AA/2496:2498
Major groove platform
geometric
IL_7RQB_092
NA
IL_4V7K_0911/AA/2457:2459,
1/AA/2493:2494
Major groove platform
homologous
IL_4WF9_091
IL_48076.6
IL_4V7K_0921/AA/2459:2461,
1/AA/2489:2493
Major groove minor groove platform with extra cWW
geometric
IL_7A0S_086
IL_51387.2
IL_4V7K_0931/AA/2466:2470,
1/AA/2480:2484
Triple sheared
homologous
IL_7RQB_095
NA
IL_4V7K_0941/AA/2507:2508,
1/AA/2580:2582
Major groove platform
homologous
IL_7RQB_096
NA
IL_4V7K_0951/AA/2510:2512,
1/AA/2574:2578
Isolated non-canonical cWW with bulges
homologous
IL_7RQB_097
NA
IL_4V7K_0961/AA/2512:2513,
1/AA/2571:2574
Multiple bulged bases
geometric
IL_7RQB_098
NA
IL_4V7K_0971/AA/2522:2523,
1/AA/2540:2543
Major groove platform with intercalation
homologous
IL_7RQB_099
NA
IL_4V7K_0991/AA/2591:2592,
1/AA/2601:2603
Single bulged A
homologous
IL_7RQB_101
NA
IL_4V7K_1001/AA/2636:2640,
1/AA/2774:2782
tSH-tHS-tHW
homologous
IL_7RQB_102
NA
IL_4V7K_1011/AA/2652:2658,
1/AA/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7RQB_103
NA
IL_4V7K_1021/AA/2680:2684,
1/AA/2725:2727
C-loop
homologous
IL_7RQB_104
NA
IL_4V7K_1041/AA/2687:2691,
1/AA/2718:2722
No text annotation
homologous
IL_7RQB_105
NA
IL_4V7K_1051/AA/2695:2696,
1/AA/2711:2714
Multiple bulged bases
homologous
IL_7RQB_106
NA
IL_4V7K_1061/AA/2737:2742,
1/AA/2762:2767
UAA/GAN with extra cWW
homologous
IL_7RQB_107
NA
IL_4V7K_1071/AA/2838:2839,
1/AA/2878:2880
Single bulged C
homologous
IL_7RQB_108
NA
IL_4V7K_1081/AA/2843:2846,
1/AA/2870:2874
No text annotation
homologous
IL_7RQB_109
NA
IL_4V7K_1091/AA/2847:2852,
1/AA/2865:2869
tHS double platform
homologous
IL_7RQB_110
NA
IL_4V7K_1101/AB/17:18,
1/AB/65:67
Major groove intercalation
homologous
IL_7RQB_111
NA
IL_4V7K_1121/AB/23:28,
1/AB/56:60
No text annotation
geometric
IL_5J7L_356
IL_18472.4
IL_4V7K_4051/AB/30:31,
1/AB/51:54
Major groove minor groove platform; mini C-loop
homologous
IL_4WF9_126
IL_68140.4
IL_4V7K_1141/AB/34:38,
1/AB/44:48
Symmetric double minor groove platform
geometric
IL_7RQB_114
NA
IL_4V7K_1151/AB/71:79,
1/AB/98:106
Bacterial 5S Loop E
homologous
IL_7RQB_115
NA
IL_4V7K_1171/Aa/30:32,
1/Aa/552:553
Single bulged G
homologous
IL_4LFB_001
IL_00225.13
IL_4V7K_1181/Aa/44:45,
1/Aa/396:398
Single bulged A
homologous
IL_4LFB_002
IL_31462.6
IL_4V7K_1191/Aa/47:52,
1/Aa/359:361
No text annotation
homologous
IL_4LFB_003
IL_14177.2
IL_4V7K_1201/Aa/54:56,
1/Aa/356:357
Minor groove platform
homologous
IL_4LFB_004
IL_51454.3
IL_4V7K_1211/Aa/63:66,
1/Aa/103:104
Multiple bulged bases
homologous
IL_6CZR_117
NA
IL_4V7K_1221/Aa/67:69,
1/Aa/100:102
Isolated non-canonical cWW pair
homologous
IL_4LFB_006
IL_87907.2
IL_4V7K_1231/Aa/129:131,
1/Aa/231:232
Minor groove platform
homologous
IL_4LFB_007
IL_33761.2
IL_4V7K_1241/Aa/132:136,
1/Aa/227:230
No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_4V7K_1251/Aa/148:153,
1/Aa/168:174
tWH-tWH-tHW-tHW
homologous
IL_4LFB_009
IL_12745.1
IL_4V7K_1261/Aa/186:188,
1/Aa/189L:191
Isolated non-canonical cWW pair
homologous
IL_4LFB_010
IL_87907.2
IL_4V7K_1271/Aa/242:247,
1/Aa/277:284
Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.3
IL_4V7K_1281/Aa/249:252,
1/Aa/274:275
No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_4V7K_1291/Aa/292:293,
1/Aa/304:308
C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_4V7K_1301/Aa/367:369,
1/Aa/392:393
Single bulged U
homologous
IL_4LFB_014
IL_89505.4
IL_4V7K_4061/Aa/371:375,
1/Aa/389:390
C-loop
homologous
IL_4LFB_015
IL_03109.3
IL_4V7K_1321/Aa/375:376,
1/Aa/387:389
Single bulged G
homologous
IL_4LFB_016
IL_00225.13
IL_4V7K_1331/Aa/409:416,
1/Aa/427:433
No text annotation
homologous
IL_4LFB_017
IL_28026.3
IL_4V7K_1341/Aa/446:450,
1/Aa/483:488
6x5 Sarcin-Ricin; G-bulge
geometric
IL_4LFB_018
IL_88269.4
IL_4V7K_1351/Aa/450:455,
1/Aa/476:483
No text annotation
homologous
IL_4LFB_019
IL_31561.1
IL_4V7K_1361/Aa/504:511,
1/Aa/540:541
SSU/LSU pseudoknot
homologous
IL_5J7L_024
IL_41203.4
IL_4V7K_1371/Aa/515:521,
1/Aa/528:536
Kink-turn related
geometric
IL_4V88_415
NA
IL_4V7K_1381/Aa/569:575,
1/Aa/880:881
No text annotation
homologous
IL_4LFB_022
IL_38186.6
IL_4V7K_1391/Aa/580:584,
1/Aa/757:761
tSH-tHW-tHS
homologous
IL_4LFB_023
IL_17136.7
IL_4V7K_1401/Aa/594:596,
1/Aa/644:645
Major groove platform
homologous
IL_4LFB_024
IL_48076.6
IL_4V7K_1411/Aa/597:598,
1/Aa/640:643
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
IL_68140.4
IL_4V7K_1421/Aa/605:612,
1/Aa/628:633
No text annotation
homologous
IL_4LFB_026
IL_78349.3
IL_4V7K_1431/Aa/654:655,
1/Aa/751:754
Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_50694.7
IL_4V7K_1441/Aa/657:658,
1/Aa/747:749
Major groove platform
homologous
IL_4LFB_028
IL_48076.6
IL_4V7K_1451/Aa/662:666,
1/Aa/740:743
Tandem non-canonical cWW pairs
homologous
IL_4LFB_029
IL_85033.2
IL_4V7K_3781/Aa/673:677,
1/Aa/713:717
Triple non-canonical cWW pairs
homologous
IL_5J7L_361
IL_49751.4
IL_4V7K_1471/Aa/683:688,
1/Aa/699:707
Kink-turn
homologous
IL_4LFB_031
IL_95727.1
IL_4V7K_1481/Aa/774:778,
1/Aa/804:805
Left turn
homologous
IL_5J7L_036
IL_29346.2
IL_4V7K_1491/Aa/779:783,
1/Aa/799:803
tSH-tHW-tHS
homologous
IL_4LFB_033
IL_17136.7
IL_4V7K_1501/Aa/887:894,
1/Aa/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_41756.4
IL_4V7K_1511/Aa/922:923,
1/Aa/1393:1395
Single bulged A
homologous
IL_5J7L_039
IL_31462.6
IL_4V7K_1521/Aa/925:927,
1/Aa/1390:1391
Single bulged G
homologous
IL_5J7L_040
IL_00225.13
IL_4V7K_1531/Aa/933:935,
1/Aa/1380:1384
Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_4V7K_1541/Aa/952:954,
1/Aa/1226:1229
Isolated non-canonical cWW pair
geometric
IL_4KYY_002
IL_07785.1
IL_4V7K_4071/Aa/993:997,
1/Aa/1044:1045
Minor groove platform
geometric
IL_4LFB_039
IL_47078.3
IL_4V7K_4081/Aa/1001:1007,
1/Aa/1022:1040
No text annotation
IL_4V7K_1581/Aa/1048:1050,
1/Aa/1208:1209
Single bulged U
homologous
IL_4LFB_042
IL_89505.4
IL_4V7K_4091/Aa/1052:1056,
1/Aa/1204:1206
Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_4V7K_1601/Aa/1057:1058,
1/Aa/1199:1203
Minor groove platform
homologous
IL_5J7L_048
IL_95583.2
IL_4V7K_1611/Aa/1060:1061,
1/Aa/1195:1197
Single bulged U
homologous
IL_4LFB_046
IL_89505.4
IL_4V7K_1621/Aa/1061:1063,
1/Aa/1193:1195
Isolated non-canonical cWW pair
geometric
IL_4P43_001
NA
IL_4V7K_1661/Aa/1124:1128,
1/Aa/1143:1149
No text annotation
geometric
IL_4LFB_048
IL_85222.1
IL_4V7K_1671/Aa/1247:1253,
1/Aa/1284:1290
No text annotation
homologous
IL_4LFB_051
IL_09129.2
IL_4V7K_1681/Aa/1254:1259,
1/Aa/1276:1283
No text annotation
IL_4V7K_3821/Aa/1254:1262,
1/Aa/1273:1283
No text annotation
IL_4V7K_1691/Aa/1259:1262,
1/Aa/1273:1276
Double sheared
geometric
IL_5J7L_256
IL_09705.15
IL_4V7K_1701/Aa/1303:1308,
1/Aa/1329:1334
No text annotation
homologous
IL_4LFB_055
IL_85536.2
IL_4V7K_1711/Aa/1399:1401,
1/Aa/1501:1504
No text annotation
geometric
IL_4V88_463
NA
IL_4V7K_1721/Aa/1401:1404,
1/Aa/1497:1501
No text annotation
geometric
IL_4V88_464
NA
IL_4V7K_1731/Aa/1405:1407,
1/Aa/1494:1496
Isolated non-canonical cWW pair
geometric
IL_4E59_001
IL_87907.2
IL_4V7K_1741/Aa/1407:1409,
1/Aa/1491:1494
Decoding loop related
geometric
IL_2ET8_003
IL_08770.1
IL_4V7K_1751/Aa/1412:1414,
1/Aa/1486:1488
Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_4V7K_1761/Aa/1416:1419,
1/Aa/1481:1484
Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_4V7K_1771/Aa/1431:1435,
1/Aa/1466:1469
UAA/GAN variation
geometric
IL_4LFB_062
IL_77691.5
IL_4V7K_1781/Aa/1435:1437,
1/Aa/1464:1466
Isolated non-canonical cWW pair
homologous
IL_4LFB_063
IL_87907.2
IL_4V7K_1791/Aa/1440:1443,
1/Aa/1459:1461
Isolated basepair with bulged bases
homologous
IL_6CZR_172
NA
IL_4V7K_1831/BA/24:30,
1/BA/510:516
Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
NA
IL_4V7K_1841/BA/36:37,
1/BA/442:444
Single bulged A
homologous
IL_7RQB_002
NA
IL_4V7K_1851/BA/42:43,
1/BA/434:436
Minor groove platform
homologous
IL_7RQB_003
NA
IL_4V7K_1861/BA/81:85,
1/BA/97:105
Kink-turn
homologous
IL_7RQB_004
NA
IL_4V7K_1871/BA/183:184,
1/BA/212:214
Single stack bend
homologous
IL_7RQB_005
NA
IL_4V7K_1881/BA/188:194,
1/BA/201:208
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_006
NA
IL_4V7K_1891/BA/239:245,
1/BA/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
NA
IL_4V7K_1901/BA/271I:271J,
1/BA/271M:271O
Single bulged U
homologous
IL_7RQB_008
NA
IL_4V7K_4101/BA/272D:272E,
1/BA/363E:364
Major groove platform
homologous
IL_9DFE_008
IL_48076.6
IL_4V7K_1921/BA/272J:279,
1/BA/361:363
No text annotation
IL_4V7K_1931/BA/280:284,
1/BA/357:360
tSH-tHW
homologous
IL_7RQB_011
NA
IL_4V7K_1941/BA/288:290,
1/BA/350:353
Isolated tHS basepair with bulges
homologous
IL_7RQB_012
NA
IL_4V7K_1951/BA/293:295,
1/BA/343:347
No text annotation
homologous
IL_7RQB_013
NA
IL_4V7K_1971/BA/481:484,
1/BA/496:509
No text annotation
homologous
IL_7RQB_014
NA
IL_4V7K_1981/BA/564:566,
1/BA/575:577
Isolated non-canonical cWW pair
homologous
IL_4WF9_017
IL_07785.1
IL_4V7K_1991/BA/606:610,
1/BA/618:622
AAA cross-strand stack
homologous
IL_4WF9_019
IL_66798.2
IL_4V7K_2001/BA/672:674,
1/BA/806:808
No text annotation
homologous
IL_7RQB_017
NA
IL_4V7K_2011/BA/674:678,
1/BA/799:806
tHW-tHW cross-strand stack
geometric
IL_4WF9_021
IL_54041.2
IL_4V7K_2021/BA/697:698,
1/BA/763:765
Single bulged A
homologous
IL_7RQB_019
NA
IL_4V7K_2031/BA/702:703,
1/BA/728:730
Single bulged G
geometric
IL_7RQB_020
NA
IL_4V7K_2041/BA/703:707,
1/BA/724:728
Triple sheared
homologous
IL_7RQB_021
NA
IL_4V7K_2051/BA/738:741,
1/BA/756:758
Major groove platform with extra cWW
homologous
IL_7RQB_022
NA
IL_4V7K_2061/BA/775:777,
1/BA/787:791
Multiple bulged bases
geometric
IL_5J7L_265
IL_06549.2
IL_4V7K_2071/BA/837:838,
1/BA/940:942
Single stack bend
homologous
IL_4WF9_028
IL_90729.1
IL_4V7K_2081/BA/844:846,
1/BA/931:934
Intercalated cWW
geometric
IL_7RQB_025
NA
IL_4V7K_3841/BA/844:850,
1/BA/927:934
No text annotation
homologous
IL_9DFE_024
IL_68243.1
IL_4V7K_2091/BA/846:850,
1/BA/927:931
No text annotation
homologous
IL_7RQB_026
NA
IL_4V7K_2101/BA/858:862,
1/BA/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_7RQB_027
NA
IL_4V7K_2111/BA/862:863,
1/BA/913:915
Minor groove platform
geometric
IL_4V9F_034
IL_51454.3
IL_4V7K_2121/BA/864:868,
1/BA/909:912
C-loop with bulged stacked A's
homologous
IL_7RQB_029
NA
IL_4V7K_3851/BA/875:877,
1/BA/899:902
No text annotation
homologous
IL_9DFE_030
IL_90351.1
IL_4V7K_3861/BA/877:879,
1/BA/898:899
Minor groove platform
homologous
IL_9DFE_031
IL_51454.3
IL_4V7K_2151/BA/880:881,
1/BA/895:897
Single bulged A
homologous
IL_7RQB_033
NA
IL_4V7K_2171/BA/952:954,
1/BA/963:965
No text annotation
homologous
IL_7RQB_034
NA
IL_4V7K_2181/BA/994:996,
1/BA/1159:1160
Single bulged C
homologous
IL_7RQB_035
NA
IL_4V7K_2191/BA/998:1002,
1/BA/1153:1157
UAA/GAN
homologous
IL_7RQB_036
NA
IL_4V7K_2201/BA/1004:1011,
1/BA/1150:1151
SSU/LSU pseudoknot
geometric
IL_7RQB_037
NA
IL_4V7K_2211/BA/1011:1013,
1/BA/1149:1150
Single bulged U
homologous
IL_7RQB_038
NA
IL_4V7K_2221/BA/1018:1024,
1/BA/1140:1144
Kink-turn related
geometric
IL_4WF9_039
IL_57188.5
IL_4V7K_2231/BA/1024:1030,
1/BA/1124:1140
No text annotation
geometric
IL_7RQB_040
NA
IL_4V7K_2241/BA/1031:1034,
1/BA/1121:1123
Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_4V7K_2251/BA/1196:1198,
1/BA/1247:1250
Isolated cWS basepair
homologous
IL_7RQB_045
NA
IL_4V7K_2261/BA/1202:1206,
1/BA/1240:1243
No text annotation
homologous
IL_7RQB_046
NA
IL_4V7K_2271/BA/1208:1215,
1/BA/1234:1238
Kink-turn
homologous
IL_7RQB_047
NA
IL_4V7K_2281/BA/1219:1221,
1/BA/1229:1230
Single bulged A
homologous
IL_7RQB_048
NA
IL_4V7K_2291/BA/1262:1269,
1/BA/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_049
NA
IL_4V7K_2301/BA/1310:1313,
1/BA/1603:1604
Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_4V7K_2311/BA/1319:1323,
1/BA/1331:1333
C-loop
homologous
IL_7RQB_051
NA
IL_4V7K_2321/BA/1351:1355,
1/BA/1376:1380
UAA/GAN
homologous
IL_7RQB_052
NA
IL_4V7K_2331/BA/1357:1361,
1/BA/1370:1374
tSH-tHW-tHS
homologous
IL_7RQB_053
NA
IL_4V7K_2341/BA/1415:1416,
1/BA/1582:1587
No text annotation
homologous
IL_7RQB_054
NA
IL_4V7K_2351/BA/1417:1421,
1/BA/1577:1581
UAA/GAN
homologous
IL_5J7L_295
IL_38507.2
IL_4V7K_2361/BA/1433:1435,
1/BA/1557:1560
Isolated tWW turn
homologous
IL_7RQB_056
NA
IL_4V7K_2371/BA/1437:1440,
1/BA/1551:1555
tSH-tHW
homologous
IL_7RQB_057
NA
IL_4V7K_2381/BA/1448:1450,
1/BA/1462:1463
Single stack bend
homologous
IL_7RQB_058
NA
IL_4V7K_2391/BA/1469:1473,
1/BA/1518:1523
UAA/GAN
homologous
IL_7RQB_060
NA
IL_4V7K_2401/BA/1481:1482,
1/BA/1506:1510
No text annotation
geometric
IL_7RQB_061
NA
IL_4V7K_3871/BA/1489:1491,
1/BA/1499:1500
Single bulged A
homologous
IL_9DFE_061
IL_31462.6
IL_4V7K_2431/BA/1526:1529,
1/BA/1540:1546
No text annotation
homologous
IL_7RQB_063
NA
IL_4V7K_3881/BA/1526:1531,
1/BA/1538:1546
No text annotation
IL_4V7K_2441/BA/1651:1656,
1/BA/2004:2006
No text annotation
homologous
IL_7RQB_064
NA
IL_4V7K_2451/BA/1663:1665,
1/BA/1995:1997
Isolated tWW turn
homologous
IL_7RQB_065
NA
IL_4V7K_2461/BA/1666:1669,
1/BA/1993:1994
Major groove platform; stack outside cWW
geometric
IL_5J7L_306
IL_50694.7
IL_4V7K_3891/BA/1666:1674,
1/BA/1990:1994
No text annotation
homologous
IL_9DFE_066
IL_22854.4
IL_4V7K_2471/BA/1669:1674,
1/BA/1990:1993
Intercalated tWH
homologous
IL_7RQB_067
NA
IL_4V7K_2481/BA/1686:1691,
1/BA/1696:1702
tSH-tSH-tHH-tHS
geometric
IL_7RQB_068
NA
IL_4V7K_2491/BA/1770:1771,
1/BA/1980:1982
Single bulged A
homologous
IL_7RQB_069
NA
IL_4V7K_2501/BA/1798:1804,
1/BA/1813:1821
Kink-turn related
homologous
IL_7RQB_070
NA
IL_4V7K_2511/BA/1837:1840,
1/BA/1902:1903
Minor groove platform, major groove intercalation
homologous
IL_7RQB_071
NA
IL_4V7K_2521/BA/1841:1842,
1/BA/1898:1901
Major groove intercalation
homologous
IL_5J7L_315
IL_82107.4
IL_4V7K_2531/BA/1846:1849,
1/BA/1893:1894
Minor groove platform
homologous
IL_7RQB_073
NA
IL_4V7K_2541/BA/1851:1855,
1/BA/1887:1891
UAA/GAN with extra pair
homologous
IL_7RQB_074
NA
IL_4V7K_2551/BA/1856:1860,
1/BA/1882:1886
Triple sheared
homologous
IL_7RQB_075
NA
IL_4V7K_2561/BA/1933:1934,
1/BA/1964:1967
Bulged stacked bases
homologous
IL_7RQB_076
NA
IL_4V7K_2571/BA/1934:1945,
1/BA/1961:1964
No text annotation
geometric
IL_4WF9_077
IL_42218.2
IL_4V7K_2581/BA/2050:2052,
1/BA/2617:2618
Major groove platform
homologous
IL_7RQB_078
NA
IL_4V7K_2591/BA/2067:2069,
1/BA/2442:2443
Single bulged U
homologous
IL_7A0S_075
IL_89505.4
IL_4V7K_2601/BA/2070:2071,
1/BA/2438:2441
Minor groove platform
homologous
IL_7RQB_081
NA
IL_4V7K_2611/BA/2081:2083,
1/BA/2236:2239
Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA
IL_4V7K_2621/BA/2085:2087,
1/BA/2232:2234
No text annotation
homologous
IL_7RQB_083
NA
IL_4V7K_4111/BA/2108:2121,
1/BA/2177:2181
No text annotation
IL_4V7K_3911/BA/2124:2127,
1/BA/2161:2174
No text annotation
homologous
IL_3U4M_003
IL_75283.2
IL_4V7K_2661/BA/2129:2136,
1/BA/2155:2159
Kink-turn
homologous
IL_5J7L_330
IL_70923.9
IL_4V7K_4121/BA/2129:2139,
1/BA/2152:2159
No text annotation
IL_4V7K_2681/BA/2297:2299,
1/BA/2317:2321
Isolated tHS basepair with bulges
geometric
IL_7RQB_088
NA
IL_4V7K_2691/BA/2350:2353,
1/BA/2364:2367
Double sheared
homologous
IL_7RQB_089
NA
IL_4V7K_2701/BA/2401:2403,
1/BA/2414:2415
Single bulged U
homologous
IL_5J7L_334
IL_89505.4
IL_4V7K_2711/BA/2453:2454,
1/BA/2498:2500
Single stack bend
homologous
IL_7RQB_091
NA
IL_4V7K_2721/BA/2454:2455,
1/BA/2496:2498
Major groove platform
geometric
IL_7RQB_092
NA
IL_4V7K_2731/BA/2457:2459,
1/BA/2493:2494
Major groove platform
geometric
IL_4WF9_091
IL_48076.6
IL_4V7K_2741/BA/2459:2461,
1/BA/2489:2493
Major groove minor groove platform with extra cWW
homologous
IL_7A0S_086
IL_51387.2
IL_4V7K_2751/BA/2466:2470,
1/BA/2480:2484
Triple sheared
homologous
IL_7RQB_095
NA
IL_4V7K_2761/BA/2507:2508,
1/BA/2580:2582
Major groove platform
homologous
IL_7RQB_096
NA
IL_4V7K_2771/BA/2510:2512,
1/BA/2574:2578
Isolated non-canonical cWW with bulges
geometric
IL_7RQB_097
NA
IL_4V7K_2781/BA/2512:2513,
1/BA/2571:2574
Multiple bulged bases
homologous
IL_7RQB_098
NA
IL_4V7K_2791/BA/2522:2523,
1/BA/2540:2543
Major groove platform with intercalation
homologous
IL_7RQB_099
NA
IL_4V7K_2811/BA/2591:2592,
1/BA/2601:2603
Single bulged A
homologous
IL_7RQB_101
NA
IL_4V7K_2821/BA/2636:2640,
1/BA/2774:2782
tSH-tHS-tHW
homologous
IL_7RQB_102
NA
IL_4V7K_2831/BA/2652:2658,
1/BA/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7RQB_103
NA
IL_4V7K_2841/BA/2680:2684,
1/BA/2725:2727
C-loop
geometric
IL_7RQB_104
NA
IL_4V7K_2861/BA/2687:2691,
1/BA/2718:2722
No text annotation
homologous
IL_7RQB_105
NA
IL_4V7K_2871/BA/2695:2696,
1/BA/2711:2714
Multiple bulged bases
homologous
IL_7RQB_106
NA
IL_4V7K_2881/BA/2737:2742,
1/BA/2762:2767
UAA/GAN with extra cWW
homologous
IL_7RQB_107
NA
IL_4V7K_2891/BA/2838:2839,
1/BA/2878:2880
Single bulged C
homologous
IL_7RQB_108
NA
IL_4V7K_2901/BA/2843:2846,
1/BA/2870:2874
No text annotation
homologous
IL_7RQB_109
NA
IL_4V7K_2911/BA/2847:2852,
1/BA/2865:2869
tHS double platform
homologous
IL_7RQB_110
NA
IL_4V7K_2921/BB/2:4,
1/BB/117:118
Multiple bulged bases
geometric
IL_7Q80_003
IL_84476.1
IL_4V7K_2931/BB/17:18,
1/BB/65:67
Major groove intercalation
homologous
IL_7RQB_111
NA
IL_4V7K_2951/BB/23:28,
1/BB/56:60
No text annotation
geometric
IL_5J7L_356
IL_18472.4
IL_4V7K_4141/BB/30:31,
1/BB/51:54
Major groove minor groove platform; mini C-loop
homologous
IL_4WF9_126
IL_68140.4
IL_4V7K_2971/BB/34:38,
1/BB/44:48
Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_4V7K_2981/BB/71:79,
1/BB/98:106
Bacterial 5S Loop E
homologous
IL_7RQB_115
NA
IL_4V7K_3001/Ba/30:32,
1/Ba/552:553
Single bulged G
homologous
IL_4LFB_001
IL_00225.13
IL_4V7K_3011/Ba/44:45,
1/Ba/396:398
Single bulged A
homologous
IL_4LFB_002
IL_31462.6
IL_4V7K_3021/Ba/47:52,
1/Ba/359:361
No text annotation
homologous
IL_4LFB_003
IL_14177.2
IL_4V7K_3031/Ba/54:56,
1/Ba/356:357
Minor groove platform
homologous
IL_4LFB_004
IL_51454.3
IL_4V7K_3041/Ba/63:66,
1/Ba/103:104
Multiple bulged bases
homologous
IL_6CZR_117
NA
IL_4V7K_3051/Ba/67:69,
1/Ba/100:102
Isolated non-canonical cWW pair
homologous
IL_4LFB_006
IL_87907.2
IL_4V7K_3061/Ba/129:131,
1/Ba/231:232
Minor groove platform
homologous
IL_4LFB_007
IL_33761.2
IL_4V7K_3071/Ba/132:136,
1/Ba/227:230
No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_4V7K_3081/Ba/148:153,
1/Ba/168:174
tWH-tWH-tHW-tHW
homologous
IL_4LFB_009
IL_12745.1
IL_4V7K_3091/Ba/186:188,
1/Ba/189L:191
Isolated non-canonical cWW pair
homologous
IL_4LFB_010
IL_87907.2
IL_4V7K_3101/Ba/242:247,
1/Ba/277:284
Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.3
IL_4V7K_3111/Ba/249:252,
1/Ba/274:275
No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_4V7K_3121/Ba/292:293,
1/Ba/304:308
C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_4V7K_3131/Ba/367:369,
1/Ba/392:393
Single bulged U
homologous
IL_4LFB_014
IL_89505.4
IL_4V7K_4151/Ba/371:375,
1/Ba/389:390
C-loop
homologous
IL_4LFB_015
IL_03109.3
IL_4V7K_3151/Ba/375:376,
1/Ba/387:389
Single bulged G
homologous
IL_4LFB_016
IL_00225.13
IL_4V7K_3161/Ba/409:416,
1/Ba/427:433
No text annotation
homologous
IL_4LFB_017
IL_28026.3
IL_4V7K_3171/Ba/446:450,
1/Ba/483:488
6x5 Sarcin-Ricin; G-bulge
homologous
IL_4LFB_018
IL_88269.4
IL_4V7K_3181/Ba/450:455,
1/Ba/476:483
No text annotation
geometric
IL_4LFB_019
IL_31561.1
IL_4V7K_3191/Ba/504:511,
1/Ba/540:541
SSU/LSU pseudoknot
homologous
IL_5J7L_024
IL_41203.4
IL_4V7K_3201/Ba/515:521,
1/Ba/528:536
Kink-turn related
geometric
IL_4V88_415
NA
IL_4V7K_3211/Ba/569:575,
1/Ba/880:881
No text annotation
homologous
IL_4LFB_022
IL_38186.6
IL_4V7K_3221/Ba/580:584,
1/Ba/757:761
tSH-tHW-tHS
homologous
IL_6CZR_135
NA
IL_4V7K_3231/Ba/594:596,
1/Ba/644:645
Major groove platform
homologous
IL_4LFB_024
IL_48076.6
IL_4V7K_3241/Ba/597:598,
1/Ba/640:643
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
IL_68140.4
IL_4V7K_3251/Ba/605:612,
1/Ba/628:633
No text annotation
homologous
IL_4LFB_026
IL_78349.3
IL_4V7K_3261/Ba/654:655,
1/Ba/751:754
Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_50694.7
IL_4V7K_3271/Ba/657:658,
1/Ba/747:749
Major groove platform
homologous
IL_4LFB_028
IL_48076.6
IL_4V7K_3281/Ba/662:666,
1/Ba/740:743
Tandem non-canonical cWW pairs
homologous
IL_4LFB_029
IL_85033.2
IL_4V7K_3961/Ba/673:677,
1/Ba/713:717
Triple non-canonical cWW pairs
homologous
IL_5J7L_361
IL_49751.4
IL_4V7K_3301/Ba/683:688,
1/Ba/699:707
Kink-turn
homologous
IL_4LFB_031
IL_95727.1
IL_4V7K_3311/Ba/774:778,
1/Ba/804:805
Left turn
homologous
IL_5J7L_036
IL_29346.2
IL_4V7K_3321/Ba/779:783,
1/Ba/799:803
tSH-tHW-tHS
homologous
IL_4LFB_033
IL_17136.7
IL_4V7K_3331/Ba/887:894,
1/Ba/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_41756.4
IL_4V7K_3341/Ba/922:923,
1/Ba/1393:1395
Single bulged A
homologous
IL_5J7L_039
IL_31462.6
IL_4V7K_3351/Ba/925:927,
1/Ba/1390:1391
Single bulged G
homologous
IL_5J7L_040
IL_00225.13
IL_4V7K_3361/Ba/933:935,
1/Ba/1380:1384
Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_4V7K_3371/Ba/952:954,
1/Ba/1226:1229
Isolated non-canonical cWW pair
geometric
IL_4KYY_002
IL_07785.1
IL_4V7K_4161/Ba/993:997,
1/Ba/1044:1045
Minor groove platform
geometric
IL_4LFB_039
IL_47078.3
IL_4V7K_4171/Ba/1001:1007,
1/Ba/1022:1040
No text annotation
IL_4V7K_3421/Ba/1048:1050,
1/Ba/1208:1209
Single bulged U
homologous
IL_4LFB_042
IL_89505.4
IL_4V7K_4181/Ba/1052:1056,
1/Ba/1204:1206
Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_4V7K_3441/Ba/1057:1058,
1/Ba/1199:1203
Minor groove platform
homologous
IL_5J7L_048
IL_95583.2
IL_4V7K_3451/Ba/1060:1061,
1/Ba/1195:1197
Single bulged U
homologous
IL_4LFB_046
IL_89505.4
IL_4V7K_3461/Ba/1061:1063,
1/Ba/1193:1195
Isolated non-canonical cWW pair
geometric
IL_4P43_001
NA
IL_4V7K_3501/Ba/1124:1128,
1/Ba/1143:1149
No text annotation
homologous
IL_4LFB_048
IL_85222.1
IL_4V7K_3511/Ba/1247:1253,
1/Ba/1284:1290
No text annotation
homologous
IL_4LFB_051
IL_09129.2
IL_4V7K_3521/Ba/1254:1259,
1/Ba/1276:1283
No text annotation
IL_4V7K_4001/Ba/1254:1262,
1/Ba/1273:1283
No text annotation
IL_4V7K_3531/Ba/1259:1262,
1/Ba/1273:1276
Double sheared
geometric
IL_5J7L_256
IL_09705.15
IL_4V7K_3541/Ba/1303:1308,
1/Ba/1329:1334
No text annotation
homologous
IL_4LFB_055
IL_85536.2
IL_4V7K_3551/Ba/1399:1401,
1/Ba/1501:1504
No text annotation
geometric
IL_4V88_463
NA
IL_4V7K_3561/Ba/1401:1404,
1/Ba/1497:1501
No text annotation
geometric
IL_4V88_464
NA
IL_4V7K_3571/Ba/1405:1407,
1/Ba/1494:1496
Isolated non-canonical cWW pair
geometric
IL_4ZC7_004
IL_87907.2
IL_4V7K_3581/Ba/1407:1409,
1/Ba/1491:1494
Decoding loop related
geometric
IL_2ET8_003
IL_08770.1
IL_4V7K_3591/Ba/1412:1414,
1/Ba/1486:1488
Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_4V7K_3601/Ba/1416:1419,
1/Ba/1481:1484
Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_4V7K_3611/Ba/1431:1435,
1/Ba/1466:1469
UAA/GAN variation
geometric
IL_4LFB_062
IL_77691.5
IL_4V7K_4191/Ba/1435:1437,
1/Ba/1464:1466
Isolated non-canonical cWW pair
homologous
IL_4LFB_063
IL_87907.2
IL_4V7K_3631/Ba/1440:1443,
1/Ba/1459:1461
No text annotation
homologous
IL_4LFB_064
IL_49061.1

Problematic loops

#loop idProblemSequence
IL_4V7K_009No text annotation
IL_4V7K_366Isolated non-canonical cWW pair
IL_4V7K_014No text annotation
IL_4V7K_031Isolated cWS basepair
IL_4V7K_032Triple sheared
IL_4V7K_034No text annotation
IL_4V7K_059Tandem non-canonical cWW pairs
IL_4V7K_081No text annotation
IL_4V7K_082No text annotation
IL_4V7K_373No text annotation
IL_4V7K_083No text annotation
IL_4V7K_375No text annotation
IL_4V7K_085No text annotation
IL_4V7K_098Isolated non-canonical cWW pair
IL_4V7K_103Isolated non-canonical cWW pair
IL_4V7K_404Isolated cWH basepair
IL_4V7K_111Tandem non-canonical cWW pairs
IL_4V7K_376No text annotation
IL_4V7K_113No text annotation
IL_4V7K_116Isolated non-canonical cWW pair
IL_4V7K_131No text annotation
IL_4V7K_377No text annotation
IL_4V7K_146No text annotation
IL_4V7K_379No text annotation
IL_4V7K_380No text annotation
IL_4V7K_155No text annotation
IL_4V7K_381No text annotation
IL_4V7K_156No text annotation
IL_4V7K_157Isolated non-canonical cWW pair
IL_4V7K_159No text annotation
IL_4V7K_163Isolated non-canonical cWW pair
IL_4V7K_164Isolated non-canonical cWW pair
IL_4V7K_165Isolated non-canonical cWW pair
IL_4V7K_180Isolated non-canonical cWW pair
IL_4V7K_181Isolated non-canonical cWW pair
IL_4V7K_182Isolated non-canonical cWW pair
IL_4V7K_191No text annotation
IL_4V7K_383Isolated non-canonical cWW pair
IL_4V7K_196No text annotation
IL_4V7K_213Isolated cWS basepair
IL_4V7K_214Triple sheared
IL_4V7K_216Tandem non-canonical cWW pairs
IL_4V7K_241Tandem non-canonical cWW pairs
IL_4V7K_242Isolated non-canonical cWW with bulges
IL_4V7K_263No text annotation
IL_4V7K_264No text annotation
IL_4V7K_390No text annotation
IL_4V7K_265No text annotation
IL_4V7K_392No text annotation
IL_4V7K_267No text annotation
IL_4V7K_280Isolated non-canonical cWW pair
IL_4V7K_285Isolated non-canonical cWW pair
IL_4V7K_413Isolated cWH basepair
IL_4V7K_294Tandem non-canonical cWW pairs
IL_4V7K_393No text annotation
IL_4V7K_296No text annotation
IL_4V7K_299Isolated non-canonical cWW pair
IL_4V7K_394Isolated non-canonical cWW pair
IL_4V7K_314No text annotation
IL_4V7K_395No text annotation
IL_4V7K_329No text annotation
IL_4V7K_397No text annotation
IL_4V7K_398No text annotation
IL_4V7K_338No text annotation
IL_4V7K_399No text annotation
IL_4V7K_339No text annotation
IL_4V7K_340Isolated near basepair
IL_4V7K_341Isolated non-canonical cWW pair
IL_4V7K_343No text annotation
IL_4V7K_347Isolated non-canonical cWW pair
IL_4V7K_348Isolated non-canonical cWW pair
IL_4V7K_349Isolated non-canonical cWW pair
IL_4V7K_362Tandem non-canonical cWW pairs
IL_4V7K_364No text annotation
IL_4V7K_365Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V7K_0331/AA/30:31,
1/AA/474:481,
1/AA/509:510
No text annotation
geometric
J3_8VTW_036
NA
J3_4V7K_0341/AA/30:31,
1/AA/474:484,
1/AA/496:510
No text annotation
homologous
J3_4WF9_011
J3_92134.2
J3_4V7K_0351/AA/32:35,
1/AA/445:461,
1/AA/468:473
No text annotation
homologous
J3_9DFE_003
J3_30040.2
J3_4V7K_0361/AA/56:57,
1/AA/70:76,
1/AA/110:114
No text annotation
homologous
J3_9DFE_004
J3_35667.2
J3_4V7K_0371/AA/269:271,
1/AA/271:272,
1/AA/366:370
No text annotation
homologous
J3_9DFE_005
J3_97971.2
J3_4V7K_0381/AA/297:301,
1/AA/316:325,
1/AA/337:341
No text annotation
homologous
J3_9DFE_006
J3_46299.2
J3_4V7K_0011/AA/683:689,
1/AA/773:775,
1/AA/791:794
No text annotation
homologous
J3_7RQB_004
NA
J3_4V7K_0021/AA/698:700,
1/AA/732:736,
1/AA/760:763
No text annotation
homologous
J3_7RQB_005
NA
J3_4V7K_0031/AA/1298:1303,
1/AA/1625:1627,
1/AA/1639:1642
No text annotation
homologous
J3_7RQB_007
NA
J3_4V7K_0041/AA/1306:1309,
1/AA/1605:1611,
1/AA/1620:1622
No text annotation
homologous
J3_7RQB_008
NA
J3_4V7K_0391/AA/1344:1350,
1/AA/1381:1385,
1/AA/1402:1403
No text annotation
homologous
J3_9DFE_012
J3_31965.2
J3_4V7K_0401/AA/1424:1429,
1/AA/1564:1565,
1/AA/1568:1574
No text annotation
homologous
J3_9DFE_013
J3_34864.2
J3_4V7K_0051/AA/2091:2093,
1/AA/2196:2200,
1/AA/2223:2228
No text annotation
homologous
J3_7RQB_010
NA
J3_4V7K_0411/AA/2282:2284,
1/AA/2384:2395,
1/AA/2421:2427
No text annotation
homologous
J3_9DFE_015
J3_20992.1
J3_4V7K_0061/AA/2295:2297,
1/AA/2321:2323,
1/AA/2332:2337
No text annotation
homologous
J3_7RQB_011
NA
J3_4V7K_0071/AA/2517:2520,
1/AA/2545:2547,
1/AA/2561:2567
No text annotation
homologous
J3_7A0S_011
J3_32601.5
J3_4V7K_0421/AA/2814:2815,
1/AA/2831:2836,
1/AA/2882:2886
No text annotation
homologous
J3_9DFE_019
J3_76911.2
J3_4V7K_0431/AB/11:16,
1/AB/68:69,
1/AB/108:110
No text annotation
homologous
J3_9DFE_020
J3_12003.2
J3_4V7K_0441/Aa/46:47,
1/Aa/361:367,
1/Aa/393:395
No text annotation
geometric
J3_4LFB_010
J3_67856.4
J3_4V7K_0451/Aa/46:52,
1/Aa/359:367,
1/Aa/393:395
No text annotation
homologous
J3_4LFB_014
J3_46317.4
J3_4V7K_0461/Aa/586:588,
1/Aa/651:654,
1/Aa/754:755
No text annotation
geometric
J3_4LFB_011
J3_56052.5
J3_4V7K_0471/Aa/586:588,
1/Aa/651:655,
1/Aa/751:755
No text annotation
homologous
J3_4LFB_015
J3_17385.4
J3_4V7K_0481/Aa/672:673,
1/Aa/717:725,
1/Aa/732:734
No text annotation
homologous
J3_6CZR_017
NA
J3_4V7K_0091/Aa/826:829,
1/Aa/857:861,
1/Aa/868:874
No text annotation
homologous
J3_4LFB_001
J3_85054.4
J3_4V7K_0101/Aa/936:939,
1/Aa/1344:1350,
1/Aa/1372:1379
No text annotation
homologous
J3_4LFB_002
J3_25303.4
J3_4V7K_0111/Aa/941:946,
1/Aa/1235:1237,
1/Aa/1337:1342
No text annotation
J3_4V7K_0691/Aa/955:962,
1/Aa/973:984,
1/Aa/1221:1225
No text annotation
homologous
J3_4LFB_004
J3_83516.4
J3_4V7K_0131/Aa/990:993,
1/Aa/1045:1047,
1/Aa/1210:1215
No text annotation
homologous
J3_4LFB_005
J3_82572.1
J3_4V7K_0701/Aa/990:997,
1/Aa/1044:1047,
1/Aa/1210:1215
No text annotation
homologous
J3_4LFB_016
J3_76475.2
J3_4V7K_0141/Aa/1063:1068,
1/Aa/1107:1113,
1/Aa/1187:1193
No text annotation
homologous
J3_4LFB_007
J3_08394.3
J3_4V7K_0501/Aa/1073:1074,
1/Aa/1083:1087,
1/Aa/1098:1102
No text annotation
homologous
J3_6CZR_024
NA
J3_4V7K_0151/Aa/1116:1118,
1/Aa/1155:1161,
1/Aa/1175:1184
No text annotation
homologous
J3_4LFB_018
J3_17791.2
J3_4V7K_0161/Aa/1237:1241,
1/Aa/1296:1303,
1/Aa/1334:1337
No text annotation
homologous
J3_4LFB_009
J3_37047.6
J3_4V7K_0511/BA/30:31,
1/BA/474:481,
1/BA/509:510
No text annotation
geometric
J3_8VTW_036
NA
J3_4V7K_0521/BA/30:31,
1/BA/474:484,
1/BA/496:510
No text annotation
homologous
J3_4WF9_011
J3_92134.2
J3_4V7K_0531/BA/32:35,
1/BA/445:461,
1/BA/468:473
No text annotation
homologous
J3_9DFE_003
J3_30040.2
J3_4V7K_0541/BA/56:57,
1/BA/70:76,
1/BA/110:114
No text annotation
homologous
J3_9DFE_004
J3_35667.2
J3_4V7K_0551/BA/269:271,
1/BA/271:272,
1/BA/366:370
No text annotation
homologous
J3_9DFE_005
J3_97971.2
J3_4V7K_0561/BA/297:301,
1/BA/316:325,
1/BA/337:341
No text annotation
homologous
J3_9DFE_006
J3_46299.2
J3_4V7K_0171/BA/683:689,
1/BA/773:775,
1/BA/791:794
No text annotation
homologous
J3_7RQB_004
NA
J3_4V7K_0181/BA/698:700,
1/BA/732:736,
1/BA/760:763
No text annotation
homologous
J3_7RQB_005
NA
J3_4V7K_0191/BA/1298:1303,
1/BA/1625:1627,
1/BA/1639:1642
No text annotation
homologous
J3_7RQB_007
NA
J3_4V7K_0201/BA/1306:1309,
1/BA/1605:1611,
1/BA/1620:1622
No text annotation
homologous
J3_7RQB_008
NA
J3_4V7K_0571/BA/1344:1350,
1/BA/1381:1385,
1/BA/1402:1403
No text annotation
homologous
J3_9DFE_012
J3_31965.2
J3_4V7K_0581/BA/1424:1429,
1/BA/1564:1565,
1/BA/1568:1574
No text annotation
homologous
J3_9DFE_013
J3_34864.2
J3_4V7K_0211/BA/2091:2093,
1/BA/2196:2200,
1/BA/2223:2228
No text annotation
homologous
J3_7RQB_010
NA
J3_4V7K_0591/BA/2282:2284,
1/BA/2384:2395,
1/BA/2421:2427
No text annotation
homologous
J3_9DFE_015
J3_20992.1
J3_4V7K_0221/BA/2295:2297,
1/BA/2321:2323,
1/BA/2332:2337
No text annotation
homologous
J3_7RQB_011
NA
J3_4V7K_0231/BA/2517:2520,
1/BA/2545:2547,
1/BA/2561:2567
No text annotation
homologous
J3_7A0S_011
J3_32601.5
J3_4V7K_0601/BA/2814:2815,
1/BA/2831:2836,
1/BA/2882:2886
No text annotation
homologous
J3_9DFE_019
J3_76911.2
J3_4V7K_0611/BB/11:16,
1/BB/68:69,
1/BB/108:110
No text annotation
homologous
J3_9DFE_020
J3_12003.2
J3_4V7K_0621/Ba/46:47,
1/Ba/361:367,
1/Ba/393:395
No text annotation
geometric
J3_4LFB_010
J3_67856.4
J3_4V7K_0631/Ba/46:52,
1/Ba/359:367,
1/Ba/393:395
No text annotation
homologous
J3_4LFB_014
J3_46317.4
J3_4V7K_0641/Ba/586:588,
1/Ba/651:654,
1/Ba/754:755
No text annotation
geometric
J3_4LFB_011
J3_56052.5
J3_4V7K_0651/Ba/586:588,
1/Ba/651:655,
1/Ba/751:755
No text annotation
homologous
J3_4LFB_015
J3_17385.4
J3_4V7K_0661/Ba/672:673,
1/Ba/717:725,
1/Ba/732:734
No text annotation
homologous
J3_6CZR_017
NA
J3_4V7K_0251/Ba/826:829,
1/Ba/857:861,
1/Ba/868:874
No text annotation
homologous
J3_4LFB_001
J3_85054.4
J3_4V7K_0261/Ba/936:939,
1/Ba/1344:1350,
1/Ba/1372:1379
No text annotation
homologous
J3_4LFB_002
J3_25303.4
J3_4V7K_0271/Ba/941:946,
1/Ba/1235:1237,
1/Ba/1337:1342
No text annotation
J3_4V7K_0711/Ba/955:962,
1/Ba/973:984,
1/Ba/1221:1225
No text annotation
homologous
J3_4LFB_004
J3_83516.4
J3_4V7K_0291/Ba/990:993,
1/Ba/1045:1047,
1/Ba/1210:1215
No text annotation
homologous
J3_4LFB_005
J3_82572.1
J3_4V7K_0721/Ba/990:997,
1/Ba/1044:1047,
1/Ba/1210:1215
No text annotation
homologous
J3_4LFB_016
J3_76475.2
J3_4V7K_0301/Ba/1063:1068,
1/Ba/1107:1113,
1/Ba/1187:1193
No text annotation
homologous
J3_4LFB_007
J3_08394.3
J3_4V7K_0731/Ba/1073:1074,
1/Ba/1083:1087,
1/Ba/1098:1102
No text annotation
homologous
J3_5J7L_009
J3_76043.3
J3_4V7K_0311/Ba/1116:1118,
1/Ba/1155:1161,
1/Ba/1175:1184
No text annotation
homologous
J3_4LFB_018
J3_17791.2
J3_4V7K_0321/Ba/1237:1241,
1/Ba/1296:1303,
1/Ba/1334:1337
No text annotation
homologous
J3_4LFB_009
J3_37047.6
J4_4V7K_0011/AA/268:269,
1/AA/370:375,
1/AA/399:406,
1/AA/421:424
No text annotation
homologous
J4_9DFE_001
J4_45801.6
J4_4V7K_0021/AA/297:301,
1/AA/316:319,
1/AA/323:325,
1/AA/337:341
No text annotation
homologous
J4_9DFE_002
J4_71729.5
J4_4V7K_0031/AA/601:604,
1/AA/624:628,
1/AA/635:638,
1/AA/650:656
No text annotation
J4_4V7K_0041/AA/1270:1276,
1/AA/1294:1295,
1/AA/1645:1648,
1/AA/2009:2010
No text annotation
homologous
J4_9DFE_003
J4_64571.5
J4_4V7K_0051/AA/1310:1314,
1/AA/1338:1343,
1/AA/1404:1405,
1/AA/1597:1604
No text annotation
homologous
J4_9DFE_004
J4_69051.6
J4_4V7K_0061/AA/1313:1314,
1/AA/1338:1343,
1/AA/1404:1405,
1/AA/1597:1603
No text annotation
homologous
J4_9DFE_005
J4_10313.5
J4_4V7K_0071/AA/1444:1445,
1/AA/1466:1467,
1/AA/1525:1526,
1/AA/1546:1547
No text annotation
homologous
J4_9DFE_006
J4_24280.2
J4_4V7K_0081/AA/1772:1776,
1/AA/1788:1792,
1/AA/1827:1830,
1/AA/1975:1979
No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_4V7K_0091/AA/1833:1835,
1/AA/1905:1906,
1/AA/1924:1933,
1/AA/1967:1972
No text annotation
homologous
J4_9DFE_008
J4_93343.1
J4_4V7K_0331/AA/2285:2289,
1/AA/2343:2347,
1/AA/2370:2372,
1/AA/2381:2383
No text annotation
homologous
J4_4WF9_008
J4_04930.6
J4_4V7K_0111/AA/2643:2646,
1/AA/2674:2676,
1/AA/2731:2735,
1/AA/2769:2771
No text annotation
homologous
J4_9DFE_010
J4_77044.4
J4_4V7K_0121/Aa/115:122,
1/Aa/239:240,
1/Aa/286:289,
1/Aa/311:312
No text annotation
homologous
J4_4LFB_001
J4_35578.3
J4_4V7K_0131/Aa/142:144,
1/Aa/178:183,
1/Aa/194:198,
1/Aa/219:221
No text annotation
homologous
J4_4LFB_002
J4_88771.1
J4_4V7K_0141/Aa/575:577,
1/Aa/764:769,
1/Aa/810:821,
1/Aa/879:880
No text annotation
homologous
J4_4LFB_003
J4_61885.6
J4_4V7K_0341/Av/7:10,
1/Av/25:27,
1/Av/43:49,
1/Av/65:66
tRNA junction
homologous
J4_4WT8_034
J4_70449.28
J4_4V7K_0351/Aw/5:10,
1/Aw/25:27,
1/Aw/43:53,
1/Aw/61:68
No text annotation
J4_4V7K_0171/BA/268:269,
1/BA/370:375,
1/BA/399:406,
1/BA/421:424
No text annotation
homologous
J4_9DFE_001
J4_45801.6
J4_4V7K_0181/BA/297:301,
1/BA/316:319,
1/BA/323:325,
1/BA/337:341
No text annotation
homologous
J4_9DFE_002
J4_71729.5
J4_4V7K_0191/BA/601:604,
1/BA/624:628,
1/BA/635:638,
1/BA/650:656
No text annotation
J4_4V7K_0201/BA/1270:1276,
1/BA/1294:1295,
1/BA/1645:1648,
1/BA/2009:2010
No text annotation
homologous
J4_9DFE_003
J4_64571.5
J4_4V7K_0211/BA/1310:1314,
1/BA/1338:1343,
1/BA/1404:1405,
1/BA/1597:1604
No text annotation
homologous
J4_9DFE_004
J4_69051.6
J4_4V7K_0221/BA/1313:1314,
1/BA/1338:1343,
1/BA/1404:1405,
1/BA/1597:1603
No text annotation
homologous
J4_9DFE_005
J4_10313.5
J4_4V7K_0231/BA/1444:1445,
1/BA/1466:1467,
1/BA/1525:1526,
1/BA/1546:1547
No text annotation
homologous
J4_9DFE_006
J4_24280.2
J4_4V7K_0241/BA/1772:1776,
1/BA/1788:1792,
1/BA/1827:1830,
1/BA/1975:1979
No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_4V7K_0251/BA/1833:1835,
1/BA/1905:1906,
1/BA/1924:1933,
1/BA/1967:1972
No text annotation
homologous
J4_9DFE_008
J4_93343.1
J4_4V7K_0361/BA/2285:2289,
1/BA/2343:2347,
1/BA/2370:2372,
1/BA/2381:2383
No text annotation
homologous
J4_4WF9_008
J4_04930.6
J4_4V7K_0271/BA/2643:2646,
1/BA/2674:2676,
1/BA/2731:2735,
1/BA/2769:2771
No text annotation
homologous
J4_9DFE_010
J4_77044.4
J4_4V7K_0281/Ba/115:122,
1/Ba/239:240,
1/Ba/286:289,
1/Ba/311:312
No text annotation
homologous
J4_4LFB_001
J4_35578.3
J4_4V7K_0291/Ba/142:144,
1/Ba/178:183,
1/Ba/194:198,
1/Ba/219:221
No text annotation
homologous
J4_4LFB_002
J4_88771.1
J4_4V7K_0301/Ba/575:577,
1/Ba/764:769,
1/Ba/810:821,
1/Ba/879:880
No text annotation
homologous
J4_4LFB_003
J4_61885.6
J4_4V7K_0371/Bv/7:10,
1/Bv/25:27,
1/Bv/43:49,
1/Bv/65:66
tRNA junction
homologous
J4_4WT8_034
J4_70449.28
J4_4V7K_0321/Bw/7:10,
1/Bw/25:27,
1/Bw/43:49,
1/Bw/65:66
tRNA junction
homologous
J4_4V9Q_031
J4_70449.28
J5_4V7K_0011/AA/47:54,
1/AA/116:121,
1/AA/130:131,
1/AA/148:150,
1/AA/176:178
No text annotation
homologous
J5_9DFE_001
J5_01737.2
J5_4V7K_0021/AA/268:271,
1/AA/271:272,
1/AA/366:375,
1/AA/399:406,
1/AA/421:424
No text annotation
J5_4V7K_0031/AA/531:533,
1/AA/560:564,
1/AA/577:579,
1/AA/1261:1262,
1/AA/2017:2018
No text annotation
homologous
J5_9DFE_003
J5_43153.5
J5_4V7K_0041/AA/584:589,
1/AA/668:671,
1/AA/809:812,
1/AA/1195:1196,
1/AA/1250:1256
No text annotation
homologous
J5_9DFE_004
J5_74302.5
J5_4V7K_0051/AA/1674:1682,
1/AA/1706:1707,
1/AA/1751:1752,
1/AA/1756:1764,
1/AA/1988:1990
No text annotation
homologous
J5_9DFE_005
J5_62523.6
J5_4V7K_0061/AA/2054:2064,
1/AA/2446:2453,
1/AA/2500:2507,
1/AA/2582:2588,
1/AA/2606:2615
No text annotation
J5_4V7K_0071/AA/2074:2077,
1/AA/2243:2246,
1/AA/2258:2259,
1/AA/2281:2282,
1/AA/2427:2435
No text annotation
homologous
J5_9DFE_007
J5_39529.1
J5_4V7K_0081/Aa/36:39,
1/Aa/403:406,
1/Aa/436:442,
1/Aa/492:500,
1/Aa/545:548
No text annotation
homologous
J5_4LFB_001
J5_70703.1
J5_4V7K_0091/Aa/58:61,
1/Aa/106:113,
1/Aa/314:316,
1/Aa/337:339,
1/Aa/350:354
No text annotation
homologous
J5_4LFB_002
J5_59910.6
J5_4V7K_0101/BA/47:54,
1/BA/116:121,
1/BA/130:131,
1/BA/148:150,
1/BA/176:178
No text annotation
homologous
J5_9DFE_001
J5_01737.2
J5_4V7K_0111/BA/268:271,
1/BA/271:272,
1/BA/366:375,
1/BA/399:406,
1/BA/421:424
No text annotation
J5_4V7K_0121/BA/531:533,
1/BA/560:564,
1/BA/577:579,
1/BA/1261:1262,
1/BA/2017:2018
No text annotation
homologous
J5_9DFE_003
J5_43153.5
J5_4V7K_0131/BA/584:589,
1/BA/668:671,
1/BA/809:812,
1/BA/1195:1196,
1/BA/1250:1256
No text annotation
homologous
J5_9DFE_004
J5_74302.5
J5_4V7K_0141/BA/1674:1682,
1/BA/1706:1707,
1/BA/1751:1752,
1/BA/1756:1764,
1/BA/1988:1990
No text annotation
homologous
J5_9DFE_005
J5_62523.6
J5_4V7K_0151/BA/2054:2064,
1/BA/2446:2453,
1/BA/2500:2507,
1/BA/2582:2588,
1/BA/2606:2615
No text annotation
J5_4V7K_0161/BA/2074:2077,
1/BA/2243:2246,
1/BA/2258:2259,
1/BA/2281:2282,
1/BA/2427:2435
No text annotation
homologous
J5_9DFE_007
J5_39529.1
J5_4V7K_0171/Ba/36:39,
1/Ba/403:406,
1/Ba/436:442,
1/Ba/492:500,
1/Ba/545:548
No text annotation
homologous
J5_4LFB_001
J5_70703.1
J5_4V7K_0181/Ba/58:61,
1/Ba/106:113,
1/Ba/314:316,
1/Ba/337:339,
1/Ba/350:354
No text annotation
homologous
J5_4LFB_002
J5_59910.6
J6_4V7K_0011/AA/44:45,
1/AA/179:183,
1/AA/214:224,
1/AA/231:235,
1/AA/262:266,
1/AA/426:433
No text annotation
J6_4V7K_0021/AA/2074:2077,
1/AA/2243:2246,
1/AA/2258:2259,
1/AA/2281:2284,
1/AA/2384:2395,
1/AA/2421:2435
No text annotation
J6_4V7K_0031/BA/44:45,
1/BA/179:183,
1/BA/214:224,
1/BA/231:235,
1/BA/262:266,
1/BA/426:433
No text annotation
J6_4V7K_0041/BA/2074:2077,
1/BA/2243:2246,
1/BA/2258:2259,
1/BA/2281:2284,
1/BA/2384:2395,
1/BA/2421:2435
No text annotation
J7_4V7K_0011/AA/817:822,
1/AA/835:836,
1/AA/943:946,
1/AA/971:976,
1/AA/987:991,
1/AA/1163:1164,
1/AA/1185:1190
No text annotation
J7_4V7K_0021/BA/817:822,
1/BA/835:836,
1/BA/943:946,
1/BA/971:976,
1/BA/987:991,
1/BA/1163:1164,
1/BA/1185:1190
No text annotation

Problematic loops

#loop idProblemSequence
J3_4V7K_008No text annotation
J3_4V7K_012No text annotation
J3_4V7K_049No text annotation
J3_4V7K_024No text annotation
J3_4V7K_028No text annotation
J3_4V7K_067No text annotation
J3_4V7K_068No text annotation
J4_4V7K_010No text annotation
J4_4V7K_015No text annotation
J4_4V7K_016No text annotation
J4_4V7K_026No text annotation
J4_4V7K_031No text annotation

Coloring options:
Copyright 2025 BGSU RNA group. Page generated in 0.2018 s