2ZJP Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2ZJP_001 | 1/X/58:67 | No text annotation Not in a motif group | homologous HL_7A0S_001 HL_99167.1 | |
| HL_2ZJP_002 | 1/X/85:95 | No text annotation Not in a motif group | homologous HL_7A0S_002 HL_05727.1 | |
| HL_2ZJP_003 | 1/X/121:126 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_2ZJP_004 | 1/X/133:138 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_2ZJP_005 | 1/X/146:151 | No text annotation Not in a motif group | homologous HL_7A0S_005 HL_30784.2 | |
| HL_2ZJP_006 | 1/X/172:177 | No text annotation Not in a motif group | geometric HL_5TBW_022 HL_94803.1 | |
| HL_2ZJP_007 | 1/X/202:207 | No text annotation Not in a motif group | homologous HL_7A0S_007 HL_02862.2 | |
| HL_2ZJP_008 | 1/X/223:229 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_2ZJP_009 | 1/X/316:323 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_2ZJP_010 | 1/X/330:334 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_2ZJP_011 | 1/X/338:346 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_2ZJP_012 | 1/X/395:405 | No text annotation Not in a motif group | homologous HL_7A0S_013 HL_91503.4 | |
| HL_2ZJP_013 | 1/X/423:430 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_2ZJP_014 | 1/X/473:478 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_2ZJP_015 | 1/X/498:503 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
| HL_2ZJP_016 | 1/X/552:560 | No text annotation Not in a motif group | geometric HL_4V9F_019 HL_90617.2 | |
| HL_2ZJP_017 | 1/X/575:584 | No text annotation Not in a motif group | homologous HL_7A0S_018 HL_89380.2 | |
| HL_2ZJP_018 | 1/X/622:627 | No text annotation Not in a motif group | homologous HL_7A0S_019 HL_32369.1 | |
| HL_2ZJP_019 | 1/X/640:645 | No text annotation Not in a motif group | homologous HL_7A0S_020 HL_42097.1 | |
| HL_2ZJP_020 | 1/X/650:659 | No text annotation Not in a motif group | ||
| HL_2ZJP_022 | 1/X/757:766 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_2ZJP_023 | 1/X/792:798 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
| HL_2ZJP_024 | 1/X/839:844 | No text annotation Not in a motif group | homologous HL_7A0S_024 HL_64365.1 | |
| HL_2ZJP_026 | 1/X/966:973 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_2ZJP_027 | 1/X/989:996 | No text annotation Not in a motif group | homologous HL_7A0S_027 HL_64430.2 | |
| HL_2ZJP_029 | 1/X/1103:1110 | No text annotation Not in a motif group | homologous HL_7RQB_030 NA | |
| HL_2ZJP_031 | 1/X/1235:1240 | No text annotation Not in a motif group | homologous HL_7A0S_031 HL_87030.2 | |
| HL_2ZJP_032 | 1/X/1294:1302 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_2ZJP_033 | 1/X/1337:1343 | No text annotation Not in a motif group | homologous HL_4WF9_033 HL_46680.1 | |
| HL_2ZJP_034 | 1/X/1376:1381 | No text annotation Not in a motif group | homologous HL_7A0S_034 HL_16173.1 | |
| HL_2ZJP_035 | 1/X/1402:1411 | No text annotation Not in a motif group | homologous HL_7A0S_035 HL_70682.1 | |
| HL_2ZJP_036 | 1/X/1466:1476 | No text annotation Not in a motif group | ||
| HL_2ZJP_037 | 1/X/1508:1514 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_2ZJP_038 | 1/X/1549:1554 | No text annotation Not in a motif group | ||
| HL_2ZJP_039 | 1/X/1581:1584 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_2ZJP_040 | 1/X/1628:1635 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_2ZJP_041 | 1/X/1647:1652 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_2ZJP_042 | 1/X/1708:1713 | UNCG Not in a motif group | homologous HL_5J7L_175 HL_03562.2 | |
| HL_2ZJP_043 | 1/X/1731:1735 | No text annotation Not in a motif group | ||
| HL_2ZJP_044 | 1/X/1743:1747 | No text annotation Not in a motif group | homologous HL_4WF9_042 HL_76539.2 | |
| HL_2ZJP_045 | 1/X/1767:1779 | No text annotation Not in a motif group | homologous HL_7A0S_045 HL_43667.1 | |
| HL_2ZJP_046 | 1/X/1797:1803 | No text annotation Not in a motif group | homologous HL_7A0S_046 HL_53845.1 | |
| HL_2ZJP_047 | 1/X/1856:1861 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_2ZJP_048 | 1/X/1932:1940 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_2ZJP_049 | 1/X/2010:2019 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_2ZJP_050 | 1/X/2188:2197 | No text annotation Not in a motif group | ||
| HL_2ZJP_051 | 1/X/2227:2235 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.2 | |
| HL_2ZJP_052 | 1/X/2243:2255 | No text annotation Not in a motif group | homologous HL_7A0S_053 HL_19870.6 | |
| HL_2ZJP_053 | 1/X/2282:2292 | No text annotation Not in a motif group | homologous HL_7A0S_054 HL_11805.3 | |
| HL_2ZJP_054 | 1/X/2303:2310 | No text annotation Not in a motif group | homologous HL_7A0S_055 HL_12078.2 | |
| HL_2ZJP_055 | 1/X/2334:2341 | No text annotation Not in a motif group | homologous HL_7A0S_056 HL_84085.2 | |
| HL_2ZJP_056 | 1/X/2353:2358 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_2ZJP_057 | 1/X/2383:2392 | No text annotation Not in a motif group | homologous HL_4WF9_055 HL_30784.2 | |
| HL_2ZJP_058 | 1/X/2450:2458 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_2ZJP_059 | 1/X/2507:2514 | No text annotation Not in a motif group | homologous HL_7A0S_060 HL_88526.2 | |
| HL_2ZJP_060 | 1/X/2530:2536 | No text annotation Not in a motif group | homologous HL_7A0S_061 HL_43656.2 | |
| HL_2ZJP_061 | 1/X/2573:2578 | No text annotation Not in a motif group | homologous HL_7A0S_062 HL_42097.1 | |
| HL_2ZJP_062 | 1/X/2637:2642 | No text annotation Not in a motif group | homologous HL_7A0S_063 HL_42097.1 | |
| HL_2ZJP_063 | 1/X/2680:2685 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_2ZJP_064 | 1/X/2725:2739 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_2ZJP_066 | 1/X/2794:2802 | No text annotation Not in a motif group | homologous HL_7A0S_067 HL_27930.1 | |
| HL_2ZJP_067 | 1/X/2831:2836 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 | |
| HL_2ZJP_068 | 1/Z/35:51 | No text annotation Not in a motif group | ||
| HL_2ZJP_069 | 1/Z/88:93 | No text annotation Not in a motif group | homologous HL_7A0S_070 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2ZJP_021 | No text annotation | ||
| HL_2ZJP_025 | No text annotation | ||
| HL_2ZJP_028 | No text annotation | ||
| HL_2ZJP_030 | No text annotation | ||
| HL_2ZJP_065 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2ZJP_001 | 1/X/24:30, 1/X/520:526 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7A0S_001 IL_66414.6 | |
| IL_2ZJP_002 | 1/X/36:37, 1/X/454:456 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_2ZJP_003 | 1/X/42:43, 1/X/447:449 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
| IL_2ZJP_004 | 1/X/80:84, 1/X/96:103 | Kink-turn Not in a motif group | homologous IL_7A0S_004 IL_45067.2 | |
| IL_2ZJP_005 | 1/X/160:161, 1/X/189:191 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_2ZJP_006 | 1/X/165:171, 1/X/178:185 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7A0S_006 IL_04346.7 | |
| IL_2ZJP_007 | 1/X/215:222, 1/X/230:236 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7A0S_007 IL_04346.7 | |
| IL_2ZJP_008 | 1/X/303:306, 1/X/354:359 | No text annotation Not in a motif group | homologous IL_7A0S_008 IL_07235.1 | |
| IL_2ZJP_009 | 1/X/492:495, 1/X/506:519 | No text annotation Not in a motif group | homologous IL_7A0S_009 IL_60992.6 | |
| IL_2ZJP_010 | 1/X/573:575, 1/X/584:586 | No text annotation Not in a motif group | geometric IL_5J7L_257 IL_95997.1 | |
| IL_2ZJP_011 | 1/X/600:602, 1/X/678:679 | Single bulged A Not in a motif group | homologous IL_7A0S_012 IL_37497.2 | |
| IL_2ZJP_012 | 1/X/616:620, 1/X/629:633 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
| IL_2ZJP_013 | 1/X/685:687, 1/X/819:821 | No text annotation Not in a motif group | geometric IL_7A0S_014 IL_95997.1 | |
| IL_2ZJP_014 | 1/X/687:691, 1/X/812:819 | No text annotation Not in a motif group | homologous IL_7A0S_015 IL_17470.6 | |
| IL_2ZJP_015 | 1/X/710:711, 1/X/776:778 | Single bulged A Not in a motif group | geometric IL_7A0S_016 IL_37497.2 | |
| IL_2ZJP_016 | 1/X/715:716, 1/X/741:743 | Single bulged G Not in a motif group | homologous IL_5J7L_262 IL_00225.2 | |
| IL_2ZJP_017 | 1/X/716:721, 1/X/736:741 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7A0S_018 IL_86929.2 | |
| IL_2ZJP_018 | 1/X/751:754, 1/X/769:771 | Major groove platform with extra cWW Not in a motif group | homologous IL_7A0S_019 IL_05564.2 | |
| IL_2ZJP_019 | 1/X/754:756, 1/X/767:769 | No text annotation Not in a motif group | geometric IL_7A0S_020 IL_95997.1 | |
| IL_2ZJP_020 | 1/X/788:790, 1/X/800:804 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.6 | |
| IL_2ZJP_021 | 1/X/850:851, 1/X/951:953 | Single stack bend Not in a motif group | homologous IL_7A0S_022 IL_92001.1 | |
| IL_2ZJP_022 | 1/X/856:860, 1/X/944:946 | Major groove platform with extra pair Not in a motif group | geometric IL_5FJC_003 IL_47263.2 | |
| IL_2ZJP_023 | 1/X/860:861, 1/X/942:944 | No text annotation Not in a motif group | geometric IL_7A0S_024 IL_92001.1 | |
| IL_2ZJP_024 | 1/X/863:864, 1/X/938:940 | Single bulged C Not in a motif group | geometric IL_7A0S_025 IL_61258.12 | |
| IL_2ZJP_025 | 1/X/864:866, 1/X/936:938 | No text annotation Not in a motif group | homologous IL_7A0S_026 IL_51629.2 | |
| IL_2ZJP_026 | 1/X/870:875, 1/X/927:932 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_2ZJP_027 | 1/X/875:876, 1/X/925:927 | Minor groove platform Not in a motif group | homologous IL_7A0S_028 IL_42622.2 | |
| IL_2ZJP_028 | 1/X/877:881, 1/X/921:924 | C-loop Not in a motif group | homologous IL_7A0S_029 IL_02509.1 | |
| IL_2ZJP_029 | 1/X/883:885, 1/X/917:919 | Isolated near basepair Not in a motif group | homologous IL_7A0S_030 IL_52767.2 | |
| IL_2ZJP_030 | 1/X/963:965, 1/X/974:976 | No text annotation Not in a motif group | homologous IL_7A0S_031 IL_95997.1 | |
| IL_2ZJP_031 | 1/X/1005:1007, 1/X/1170:1171 | Single bulged C Not in a motif group | homologous IL_7A0S_032 IL_61258.12 | |
| IL_2ZJP_032 | 1/X/1009:1013, 1/X/1164:1168 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
| IL_2ZJP_033 | 1/X/1015:1022, 1/X/1161:1162 | SSU/LSU pseudoknot Not in a motif group | homologous IL_7A0S_034 IL_15861.7 | |
| IL_2ZJP_034 | 1/X/1022:1024, 1/X/1160:1161 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.13 | |
| IL_2ZJP_035 | 1/X/1029:1035, 1/X/1150:1155 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_2ZJP_036 | 1/X/1042:1045, 1/X/1132:1134 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_2ZJP_037 | 1/X/1045:1047, 1/X/1130:1132 | No text annotation Not in a motif group | geometric IL_1YZ9_002 IL_95997.1 | |
| IL_2ZJP_041 | 1/X/1175:1178, 1/X/1196:1199 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_7A0S_040 IL_30621.2 | |
| IL_2ZJP_042 | 1/X/1210:1212, 1/X/1260:1263 | Isolated cWS basepair Not in a motif group | homologous IL_7A0S_041 IL_52767.2 | |
| IL_2ZJP_043 | 1/X/1218:1220, 1/X/1252:1254 | No text annotation Not in a motif group | homologous IL_7A0S_042 IL_51629.2 | |
| IL_2ZJP_044 | 1/X/1221:1228, 1/X/1247:1251 | Kink-turn Not in a motif group | homologous IL_7A0S_043 IL_70923.2 | |
| IL_2ZJP_045 | 1/X/1232:1234, 1/X/1241:1243 | Intercalated cWW Not in a motif group | homologous IL_7A0S_044 IL_82842.2 | |
| IL_2ZJP_046 | 1/X/1275:1282, 1/X/1994:2000 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7A0S_045 IL_04346.7 | |
| IL_2ZJP_047 | 1/X/1323:1326, 1/X/1619:1620 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_290 IL_50694.2 | |
| IL_2ZJP_048 | 1/X/1332:1336, 1/X/1344:1346 | C-loop Not in a motif group | homologous IL_7A0S_047 IL_37712.2 | |
| IL_2ZJP_049 | 1/X/1364:1368, 1/X/1389:1393 | UAA/GAN Not in a motif group | geometric IL_4WF9_051 IL_89002.2 | |
| IL_2ZJP_050 | 1/X/1368:1370, 1/X/1387:1389 | No text annotation Not in a motif group | geometric IL_4KR9_001 IL_51629.2 | |
| IL_2ZJP_051 | 1/X/1370:1374, 1/X/1383:1387 | tSH-tHW-tHS Not in a motif group | geometric IL_7A0S_049 IL_17136.1 | |
| IL_2ZJP_053 | 1/X/1431:1435, 1/X/1593:1597 | UAA/GAN Not in a motif group | homologous IL_7A0S_051 IL_89002.2 | |
| IL_2ZJP_054 | 1/X/1447:1449, 1/X/1573:1576 | No text annotation Not in a motif group | homologous IL_7A0S_052 IL_55351.2 | |
| IL_2ZJP_055 | 1/X/1451:1454, 1/X/1567:1571 | tSH-tHW Not in a motif group | homologous IL_7A0S_053 IL_04059.1 | |
| IL_2ZJP_056 | 1/X/1463:1465, 1/X/1477:1478 | Single stack bend Not in a motif group | homologous IL_7A0S_054 IL_76488.2 | |
| IL_2ZJP_057 | 1/X/1488:1490, 1/X/1534:1535 | Single bulged C Not in a motif group | homologous IL_7A0S_055 IL_61258.12 | |
| IL_2ZJP_058 | 1/X/1491:1494, 1/X/1530:1533 | Double sheared Not in a motif group | geometric IL_4WF9_087 IL_09705.9 | |
| IL_2ZJP_059 | 1/X/1497:1498, 1/X/1522:1527 | No text annotation Not in a motif group | ||
| IL_2ZJP_060 | 1/X/1503:1507, 1/X/1515:1517 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_009 IL_82068.2 | |
| IL_2ZJP_061 | 1/X/1668:1673, 1/X/1987:1989 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_2ZJP_062 | 1/X/1680:1682, 1/X/1978:1980 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.7 | |
| IL_2ZJP_063 | 1/X/1683:1686, 1/X/1976:1977 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7A0S_061 IL_50694.2 | |
| IL_2ZJP_064 | 1/X/1686:1691, 1/X/1973:1976 | Intercalated tWH Not in a motif group | homologous IL_7A0S_062 IL_82842.2 | |
| IL_2ZJP_065 | 1/X/1703:1708, 1/X/1713:1719 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5TBW_078 IL_65969.2 | |
| IL_2ZJP_066 | 1/X/1761:1762, 1/X/1963:1965 | Single bulged A Not in a motif group | homologous IL_7A0S_064 IL_37497.2 | |
| IL_2ZJP_067 | 1/X/1789:1795, 1/X/1805:1813 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_2ZJP_068 | 1/X/1829:1832, 1/X/1885:1886 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7A0S_066 IL_88739.1 | |
| IL_2ZJP_069 | 1/X/1833:1834, 1/X/1881:1884 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_2ZJP_070 | 1/X/1838:1841, 1/X/1876:1877 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
| IL_2ZJP_071 | 1/X/1843:1847, 1/X/1870:1874 | UAA/GAN with extra pair Not in a motif group | homologous IL_7A0S_069 IL_90318.1 | |
| IL_2ZJP_072 | 1/X/1848:1852, 1/X/1865:1869 | Triple sheared Not in a motif group | homologous IL_7A0S_070 IL_56467.8 | |
| IL_2ZJP_073 | 1/X/1916:1917, 1/X/1947:1950 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_318 IL_59677.2 | |
| IL_2ZJP_074 | 1/X/1917:1928, 1/X/1944:1947 | No text annotation Not in a motif group | geometric IL_7A0S_072 IL_81589.2 | |
| IL_2ZJP_075 | 1/X/2033:2035, 1/X/2596:2597 | Major groove platform Not in a motif group | homologous IL_7A0S_073 IL_27635.1 | |
| IL_2ZJP_076 | 1/X/2037:2040, 1/X/2590:2594 | No text annotation Not in a motif group | ||
| IL_2ZJP_077 | 1/X/2050:2052, 1/X/2421:2422 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.13 | |
| IL_2ZJP_078 | 1/X/2053:2054, 1/X/2417:2420 | Minor groove platform Not in a motif group | homologous IL_4WF9_081 IL_42622.2 | |
| IL_2ZJP_079 | 1/X/2064:2066, 1/X/2215:2218 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4WF9_082 IL_38958.7 | |
| IL_2ZJP_080 | 1/X/2068:2070, 1/X/2211:2213 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_2ZJP_081 | 1/X/2076:2078, 1/X/2177:2179 | CC cWW Not in a motif group | geometric IL_4E59_001 IL_95997.1 | |
| IL_2ZJP_083 | 1/X/2276:2278, 1/X/2296:2300 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_082 IL_38958.7 | |
| IL_2ZJP_084 | 1/X/2329:2332, 1/X/2343:2346 | No text annotation Not in a motif group | ||
| IL_2ZJP_085 | 1/X/2380:2382, 1/X/2393:2394 | Major groove platform Not in a motif group | homologous IL_7A0S_082 IL_27635.1 | |
| IL_2ZJP_086 | 1/X/2432:2433, 1/X/2477:2479 | Single stack bend Not in a motif group | geometric IL_7A0S_083 IL_76488.2 | |
| IL_2ZJP_087 | 1/X/2433:2434, 1/X/2475:2477 | Major groove platform Not in a motif group | homologous IL_4WF9_090 IL_27635.1 | |
| IL_2ZJP_088 | 1/X/2436:2438, 1/X/2472:2473 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_2ZJP_089 | 1/X/2438:2440, 1/X/2468:2472 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7A0S_086 IL_92788.2 | |
| IL_2ZJP_090 | 1/X/2445:2449, 1/X/2459:2463 | Triple sheared Not in a motif group | homologous IL_7A0S_087 IL_56467.8 | |
| IL_2ZJP_091 | 1/X/2489:2491, 1/X/2553:2557 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4WF9_095 IL_90933.2 | |
| IL_2ZJP_092 | 1/X/2491:2492, 1/X/2550:2553 | Multiple bulged bases Not in a motif group | homologous IL_7A0S_090 IL_71530.2 | |
| IL_2ZJP_093 | 1/X/2501:2502, 1/X/2519:2522 | Minor groove platform with intercalation Not in a motif group | homologous IL_7A0S_091 IL_95601.3 | |
| IL_2ZJP_094 | 1/X/2570:2571, 1/X/2580:2582 | No text annotation Not in a motif group | ||
| IL_2ZJP_095 | 1/X/2615:2619, 1/X/2754:2762 | tSH-tHS-tHW Not in a motif group | homologous IL_7A0S_093 IL_04638.1 | |
| IL_2ZJP_096 | 1/X/2631:2637, 1/X/2642:2647 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7A0S_094 IL_16458.1 | |
| IL_2ZJP_097 | 1/X/2659:2663, 1/X/2705:2707 | C-loop Not in a motif group | homologous IL_7A0S_095 IL_63596.6 | |
| IL_2ZJP_098 | 1/X/2666:2670, 1/X/2698:2702 | No text annotation Not in a motif group | homologous IL_7A0S_096 IL_08296.3 | |
| IL_2ZJP_099 | 1/X/2674:2676, 1/X/2689:2694 | No text annotation Not in a motif group | geometric IL_5VSU_002 IL_55351.2 | |
| IL_2ZJP_100 | 1/X/2717:2722, 1/X/2742:2747 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7A0S_098 IL_49767.5 | |
| IL_2ZJP_101 | 1/X/2813:2814, 1/X/2853:2855 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_2ZJP_102 | 1/X/2818:2820, 1/X/2846:2849 | Decoding loop related Not in a motif group | homologous IL_7A0S_100 IL_02284.5 | |
| IL_2ZJP_103 | 1/X/2822:2827, 1/X/2840:2844 | No text annotation Not in a motif group | homologous IL_7A0S_101 IL_83162.5 | |
| IL_2ZJP_104 | 1/Z/19:21, 1/Z/66:69 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5ML7_010 IL_82068.2 | |
| IL_2ZJP_105 | 1/Z/25:30, 1/Z/58:62 | No text annotation Not in a motif group | homologous IL_7A0S_103 IL_18472.2 | |
| IL_2ZJP_106 | 1/Z/32:33, 1/Z/53:56 | Minor groove platform Not in a motif group | homologous IL_5TBW_374 IL_63797.2 | |
| IL_2ZJP_107 | 1/Z/73:81, 1/Z/100:108 | Bacterial 5S Loop E Not in a motif group | homologous IL_7A0S_106 IL_56455.3 | |
| IL_2ZJP_108 | 1/Z/82:84, 1/Z/97:99 | No text annotation Not in a motif group | homologous IL_7A0S_107 IL_51629.2 | |
| IL_2ZJP_109 | 1/X/1035:1041, 1/X/1135:1150 | No text annotation Not in a motif group | geometric IL_7A0S_037 IL_50715.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2ZJP_038 | Kink-turn | ||
| IL_2ZJP_039 | No text annotation | ||
| IL_2ZJP_040 | Major groove platform with extra cWW | ||
| IL_2ZJP_052 | No text annotation | ||
| IL_2ZJP_082 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_2ZJP_001 | 1/X/696:702, 1/X/786:788, 1/X/804:807 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_2ZJP_002 | 1/X/711:713, 1/X/745:749, 1/X/773:776 | No text annotation Not in a motif group | homologous J3_7A0S_005 NA | |
| J3_2ZJP_004 | 1/X/1311:1316, 1/X/1641:1643, 1/X/1656:1659 | No text annotation Not in a motif group | homologous J3_7A0S_006 NA | |
| J3_2ZJP_005 | 1/X/1319:1322, 1/X/1621:1627, 1/X/1636:1638 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_2ZJP_006 | 1/X/1825:1827, 1/X/1888:1916, 1/X/1950:1955 | No text annotation Not in a motif group | ||
| J3_2ZJP_007 | 1/X/2073:2076, 1/X/2179:2183, 1/X/2202:2208 | No text annotation Not in a motif group | ||
| J3_2ZJP_008 | 1/X/2274:2276, 1/X/2300:2303, 1/X/2310:2316 | No text annotation Not in a motif group | ||
| J3_2ZJP_009 | 1/X/2496:2499, 1/X/2524:2526, 1/X/2540:2546 | No text annotation Not in a motif group | homologous J3_7A0S_011 NA | |
| J3_2ZJP_010 | 1/X/2769:2771, 1/X/2781:2786, 1/X/2864:2868 | No text annotation Not in a motif group | homologous J3_7A0S_012 NA | |
| J3_2ZJP_011 | 1/Z/12:18, 1/Z/70:72, 1/Z/109:113 | No text annotation Not in a motif group | ||
| J3_2ZJP_012 | 1/X/30:31, 1/X/485:492, 1/X/519:520 | No text annotation Not in a motif group | ||
| J3_2ZJP_013 | 1/X/55:56, 1/X/69:75, 1/X/108:112 | No text annotation Not in a motif group | homologous J3_7A0S_002 NA | |
| J3_2ZJP_014 | 1/X/2789:2790, 1/X/2806:2811, 1/X/2857:2861 | No text annotation Not in a motif group | homologous J3_7A0S_013 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_2ZJP_003 | No text annotation |
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