6U48 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6U48_001 | 1/CA/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_29414.1 | |
| HL_6U48_002 | 1/CA/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_17926.5 | |
| HL_6U48_003 | 1/CA/123:128 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_62869.3 | |
| HL_6U48_004 | 1/CA/137:142 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_69459.1 | |
| HL_6U48_005 | 1/CA/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_6U48_006 | 1/CA/194:201 | No text annotation Not in a motif group | homologous HL_4WF9_006 HL_23481.5 | |
| HL_6U48_007 | 1/CA/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_35894.3 | |
| HL_6U48_008 | 1/CA/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.5 | |
| HL_6U48_009 | 1/CA/305:312 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_68493.6 | |
| HL_6U48_010 | 1/CA/319:323 | No text annotation Not in a motif group | homologous HL_4WF9_011 HL_98557.5 | |
| HL_6U48_011 | 1/CA/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.6 | |
| HL_6U48_012 | 1/CA/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.3 | |
| HL_6U48_013 | 1/CA/410:417 | No text annotation Not in a motif group | homologous HL_7A0S_014 HL_32512.8 | |
| HL_6U48_014 | 1/CA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_43074.18 | |
| HL_6U48_015 | 1/CA/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_68304.6 | |
| HL_6U48_016 | 1/CA/542:551 | No text annotation Not in a motif group | ||
| HL_6U48_017 | 1/CA/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_150 HL_33239.17 | |
| HL_6U48_018 | 1/CA/611:617 | No text annotation Not in a motif group | ||
| HL_6U48_019 | 1/CA/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_43074.18 | |
| HL_6U48_020 | 1/CA/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_16419.1 | |
| HL_6U48_021 | 1/CA/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_93727.5 | |
| HL_6U48_022 | 1/CA/744:753 | No text annotation Not in a motif group | homologous HL_5J7L_155 NA | |
| HL_6U48_023 | 1/CA/779:785 | No text annotation Not in a motif group | geometric HL_6JQ6_004 HL_79299.11 | |
| HL_6U48_024 | 1/CA/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_15942.5 | |
| HL_6U48_026 | 1/CA/954:963 | No text annotation Not in a motif group | homologous HL_5J7L_159 NA | |
| HL_6U48_027 | 1/CA/978:985 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_72451.5 | |
| HL_6U48_028 | 1/CA/1064:1074 | No text annotation Not in a motif group | homologous HL_1MMS_001 HL_92304.3 | |
| HL_6U48_029 | 1/CA/1092:1099 | No text annotation Not in a motif group | homologous HL_7RQB_030 NA | |
| HL_6U48_030 | 1/CA/1172:1177 | No text annotation Not in a motif group | ||
| HL_6U48_031 | 1/CA/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_43074.18 | |
| HL_6U48_032 | 1/CA/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_33239.17 | |
| HL_6U48_033 | 1/CA/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_86880.5 | |
| HL_6U48_034 | 1/CA/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_43074.18 | |
| HL_6U48_035 | 1/CA/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_78457.4 | |
| HL_6U48_036 | 1/CA/1451:1459 | No text annotation Not in a motif group | geometric HL_5J7L_169 HL_71540.1 | |
| HL_6U48_037 | 1/CA/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_86880.5 | |
| HL_6U48_038 | 1/CA/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_79299.11 | |
| HL_6U48_039 | 1/CA/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_69353.7 | |
| HL_6U48_040 | 1/CA/1612:1619 | No text annotation Not in a motif group | ||
| HL_6U48_041 | 1/CA/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_02361.6 | |
| HL_6U48_042 | 1/CA/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_79299.11 | |
| HL_6U48_043 | 1/CA/1727:1733 | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_93229.1 | |
| HL_6U48_044 | 1/CA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_79272.3 | |
| HL_6U48_045 | 1/CA/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.4 | |
| HL_6U48_046 | 1/CA/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_32527.3 | |
| HL_6U48_047 | 1/CA/1868:1873 | Other HL Not in a motif group | homologous HL_5J7L_180 HL_43074.18 | |
| HL_6U48_048 | 1/CA/1910:1920 | No text annotation Not in a motif group | homologous HL_5J7L_181 NA | |
| HL_6U48_049 | 1/CA/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_53760.4 | |
| HL_6U48_050 | 1/CA/2027:2036 | No text annotation Not in a motif group | ||
| HL_6U48_051 | 1/CA/2143:2148 | No text annotation Not in a motif group | homologous HL_5J7L_184 NA | |
| HL_6U48_052 | 1/CA/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.5 | |
| HL_6U48_053 | 1/CA/2248:2256 | No text annotation Not in a motif group | homologous HL_5J7L_186 NA | |
| HL_6U48_054 | 1/CA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.5 | |
| HL_6U48_055 | 1/CA/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_6U48_056 | 1/CA/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_46142.8 | |
| HL_6U48_057 | 1/CA/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_43074.18 | |
| HL_6U48_058 | 1/CA/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_43074.18 | |
| HL_6U48_059 | 1/CA/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_48376.4 | |
| HL_6U48_060 | 1/CA/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_36421.5 | |
| HL_6U48_061 | 1/CA/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_92681.5 | |
| HL_6U48_062 | 1/CA/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_6U48_063 | 1/CA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_43074.18 | |
| HL_6U48_064 | 1/CA/2658:2663 | GNRA Not in a motif group | geometric HL_4QLM_001 HL_43074.18 | |
| HL_6U48_065 | 1/CA/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_67719.1 | |
| HL_6U48_066 | 1/CA/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.5 | |
| HL_6U48_067 | 1/CA/2795:2801 | Other HL Not in a motif group | homologous HL_5J7L_200 HL_96776.3 | |
| HL_6U48_068 | 1/CA/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_05018.6 | |
| HL_6U48_069 | 1/CA/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_43074.18 | |
| HL_6U48_070 | 1/CB/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_02733.5 | |
| HL_6U48_071 | 1/CB/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_36982.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6U48_025 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6U48_001 | 1/CA/24:30, 1/CA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5J7L_245 IL_66414.5 | |
| IL_6U48_002 | 1/CA/36:37, 1/CA/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_80007.16 | |
| IL_6U48_003 | 1/CA/43:44, 1/CA/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_06437.11 | |
| IL_6U48_004 | 1/CA/81:85, 1/CA/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_85931.1 | |
| IL_6U48_005 | 1/CA/183:184, 1/CA/212:214 | Single stack bend Not in a motif group | homologous IL_5J7L_249 IL_04038.4 | |
| IL_6U48_006 | 1/CA/188:194, 1/CA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_250 IL_04346.5 | |
| IL_6U48_007 | 1/CA/239:245, 1/CA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_35110.5 | |
| IL_6U48_008 | 1/CA/269:271, 1/CA/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_6U48_009 | 1/CA/274:281, 1/CA/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_6U48_010 | 1/CA/293:295, 1/CA/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.1 | |
| IL_6U48_011 | 1/CA/481:484, 1/CA/496:509 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.5 | |
| IL_6U48_012 | 1/CA/536:539, 1/CA/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.7 | |
| IL_6U48_013 | 1/CA/564:566, 1/CA/575:577 | No text annotation Not in a motif group | geometric IL_5J7L_257 IL_01312.13 | |
| IL_6U48_014 | 1/CA/606:610, 1/CA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_56467.6 | |
| IL_6U48_015 | 1/CA/672:674, 1/CA/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_01312.13 | |
| IL_6U48_016 | 1/CA/674:678, 1/CA/799:806 | No text annotation Not in a motif group | homologous IL_7RQB_018 IL_17470.5 | |
| IL_6U48_017 | 1/CA/697:698, 1/CA/763:765 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_80007.16 | |
| IL_6U48_018 | 1/CA/702:703, 1/CA/728:730 | Single bulged G Not in a motif group | geometric IL_5J7L_262 IL_59137.10 | |
| IL_6U48_019 | 1/CA/703:707, 1/CA/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.6 | |
| IL_6U48_020 | 1/CA/738:740, 1/CA/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_80663.10 | |
| IL_6U48_021 | 1/CA/775:777, 1/CA/787:791 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.5 | |
| IL_6U48_022 | 1/CA/844:847, 1/CA/933:934 | Other IL Not in a motif group | homologous IL_5J7L_267 IL_31836.1 | |
| IL_6U48_023 | 1/CA/847:848, 1/CA/930:933 | Stack outside cWW Not in a motif group | geometric IL_5J7L_268 IL_37629.1 | |
| IL_6U48_024 | 1/CA/850:851, 1/CA/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_04038.4 | |
| IL_6U48_025 | 1/CA/856:862, 1/CA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.2 | |
| IL_6U48_026 | 1/CA/862:863, 1/CA/913:915 | Single bulged G Not in a motif group | homologous IL_5J7L_271 IL_59137.10 | |
| IL_6U48_027 | 1/CA/864:868, 1/CA/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.4 | |
| IL_6U48_028 | 1/CA/870:872, 1/CA/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_01312.13 | |
| IL_6U48_029 | 1/CA/875:880, 1/CA/897:902 | No text annotation Not in a motif group | geometric IL_5TBW_026 IL_19954.1 | |
| IL_6U48_030 | 1/CA/994:996, 1/CA/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.10 | |
| IL_6U48_031 | 1/CA/998:1002, 1/CA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_53523.5 | |
| IL_6U48_032 | 1/CA/1004:1011, 1/CA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.6 | |
| IL_6U48_033 | 1/CA/1011:1013, 1/CA/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.11 | |
| IL_6U48_034 | 1/CA/1018:1024, 1/CA/1140:1144 | No text annotation Not in a motif group | geometric IL_5J7L_280 IL_57188.3 | |
| IL_6U48_035 | 1/CA/1024:1030, 1/CA/1124:1140 | No text annotation Not in a motif group | homologous IL_5J7L_281 IL_22615.1 | |
| IL_6U48_036 | 1/CA/1031:1034, 1/CA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_55456.1 | |
| IL_6U48_037 | 1/CA/1038:1041, 1/CA/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_85877.10 | |
| IL_6U48_038 | 1/CA/1042:1052, 1/CA/1107:1113 | No text annotation Not in a motif group | ||
| IL_6U48_039 | 1/CA/1059:1062, 1/CA/1076:1079 | No text annotation Not in a motif group | homologous IL_5J7L_285 IL_23544.2 | |
| IL_6U48_040 | 1/CA/1087:1091, 1/CA/1100:1102 | No text annotation Not in a motif group | geometric IL_6CZR_136 IL_07931.5 | |
| IL_6U48_041 | 1/CA/1196:1198, 1/CA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_67621.5 | |
| IL_6U48_042 | 1/CA/1202:1206, 1/CA/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_6U48_043 | 1/CA/1208:1215, 1/CA/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_29549.9 | |
| IL_6U48_044 | 1/CA/1262:1269, 1/CA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.5 | |
| IL_6U48_045 | 1/CA/1310:1313, 1/CA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_049 IL_70995.6 | |
| IL_6U48_046 | 1/CA/1319:1323, 1/CA/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_08376.2 | |
| IL_6U48_047 | 1/CA/1351:1355, 1/CA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_34907.2 | |
| IL_6U48_048 | 1/CA/1357:1361, 1/CA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_39521.5 | |
| IL_6U48_049 | 1/CA/1415:1416, 1/CA/1582:1587 | No text annotation Not in a motif group | homologous IL_5J7L_294 IL_90348.1 | |
| IL_6U48_050 | 1/CA/1417:1421, 1/CA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_53523.5 | |
| IL_6U48_051 | 1/CA/1432:1435, 1/CA/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_85877.10 | |
| IL_6U48_052 | 1/CA/1437:1440, 1/CA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_08757.3 | |
| IL_6U48_053 | 1/CA/1450:1451, 1/CA/1459:1461 | Single bulged U Not in a motif group | homologous IL_5J7L_298 IL_83039.11 | |
| IL_6U48_054 | 1/CA/1468:1471, 1/CA/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_6U48_055 | 1/CA/1474:1478, 1/CA/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_39521.5 | |
| IL_6U48_056 | 1/CA/1480:1482, 1/CA/1507:1511 | No text annotation Not in a motif group | homologous IL_4WF9_060 NA | |
| IL_6U48_057 | 1/CA/1489:1491, 1/CA/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_80007.16 | |
| IL_6U48_058 | 1/CA/1526:1529, 1/CA/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_81389.2 | |
| IL_6U48_059 | 1/CA/1651:1656, 1/CA/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_6U48_060 | 1/CA/1663:1665, 1/CA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.5 | |
| IL_6U48_061 | 1/CA/1666:1669, 1/CA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_80663.10 | |
| IL_6U48_062 | 1/CA/1669:1674, 1/CA/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_5J7L_307 IL_01312.13 | |
| IL_6U48_063 | 1/CA/1686:1691, 1/CA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5J7L_308 IL_66584.5 | |
| IL_6U48_064 | 1/CA/1712:1718, 1/CA/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.2 | |
| IL_6U48_065 | 1/CA/1720:1724, 1/CA/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.6 | |
| IL_6U48_066 | 1/CA/1770:1771, 1/CA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7A0S_064 IL_80007.16 | |
| IL_6U48_067 | 1/CA/1798:1804, 1/CA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_6U48_068 | 1/CA/1837:1840, 1/CA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_06437.11 | |
| IL_6U48_069 | 1/CA/1841:1842, 1/CA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_13730.12 | |
| IL_6U48_070 | 1/CA/1846:1849, 1/CA/1893:1894 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.4 | |
| IL_6U48_071 | 1/CA/1863:1867, 1/CA/1874:1879 | No text annotation Not in a motif group | ||
| IL_6U48_072 | 1/CA/1933:1934, 1/CA/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_69632.1 | |
| IL_6U48_073 | 1/CA/1934:1945, 1/CA/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_07097.1 | |
| IL_6U48_074 | 1/CA/2050:2052, 1/CA/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_80663.10 | |
| IL_6U48_075 | 1/CA/2054:2056, 1/CA/2612:2615 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.3 | |
| IL_6U48_076 | 1/CA/2064:2066, 1/CA/2444:2446 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
| IL_6U48_077 | 1/CA/2067:2070, 1/CA/2441:2443 | No text annotation Not in a motif group | homologous IL_5J7L_323 NA | |
| IL_6U48_078 | 1/CA/2070:2071, 1/CA/2438:2441 | Minor groove platform Not in a motif group | geometric IL_5TBW_094 IL_06437.11 | |
| IL_6U48_079 | 1/CA/2081:2083, 1/CA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.6 | |
| IL_6U48_080 | 1/CA/2085:2087, 1/CA/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_01312.13 | |
| IL_6U48_081 | 1/CA/2103:2107, 1/CA/2182:2186 | No text annotation Not in a motif group | ||
| IL_6U48_082 | 1/CA/2107:2110, 1/CA/2179:2182 | No text annotation Not in a motif group | ||
| IL_6U48_083 | 1/CA/2110:2121, 1/CA/2177:2179 | No text annotation Not in a motif group | ||
| IL_6U48_084 | 1/CA/2123:2127, 1/CA/2161:2175 | No text annotation Not in a motif group | ||
| IL_6U48_085 | 1/CA/2127:2137, 1/CA/2154:2161 | No text annotation Not in a motif group | ||
| IL_6U48_086 | 1/CA/2202:2204, 1/CA/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_21340.1 | |
| IL_6U48_087 | 1/CA/2350:2353, 1/CA/2364:2367 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.7 | |
| IL_6U48_088 | 1/CA/2401:2403, 1/CA/2414:2415 | No text annotation Not in a motif group | ||
| IL_6U48_089 | 1/CA/2453:2455, 1/CA/2496:2500 | No text annotation Not in a motif group | homologous IL_5J7L_335 NA | |
| IL_6U48_090 | 1/CA/2456:2459, 1/CA/2493:2495 | Major groove platform with extra pair Not in a motif group | geometric IL_4OQU_001 IL_87630.5 | |
| IL_6U48_091 | 1/CA/2459:2461, 1/CA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_337 IL_96042.4 | |
| IL_6U48_092 | 1/CA/2466:2470, 1/CA/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.6 | |
| IL_6U48_093 | 1/CA/2507:2509, 1/CA/2579:2582 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
| IL_6U48_094 | 1/CA/2510:2512, 1/CA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_340 IL_01312.13 | |
| IL_6U48_095 | 1/CA/2512:2513, 1/CA/2571:2574 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_44093.1 | |
| IL_6U48_096 | 1/CA/2522:2523, 1/CA/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.1 | |
| IL_6U48_097 | 1/CA/2588:2590, 1/CA/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_6U48_098 | 1/CA/2591:2592, 1/CA/2601:2603 | Single bulged A Not in a motif group | homologous IL_5J7L_344 IL_80007.16 | |
| IL_6U48_099 | 1/CA/2636:2640, 1/CA/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_03420.1 | |
| IL_6U48_100 | 1/CA/2652:2658, 1/CA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_5J7L_346 IL_35110.5 | |
| IL_6U48_101 | 1/CA/2680:2684, 1/CA/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.4 | |
| IL_6U48_102 | 1/CA/2687:2691, 1/CA/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
| IL_6U48_103 | 1/CA/2695:2696, 1/CA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_13730.12 | |
| IL_6U48_104 | 1/CA/2737:2742, 1/CA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.4 | |
| IL_6U48_105 | 1/CA/2806:2811, 1/CA/2889:2892 | No text annotation Not in a motif group | homologous IL_5J7L_351 IL_82988.1 | |
| IL_6U48_106 | 1/CA/2838:2839, 1/CA/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_80663.10 | |
| IL_6U48_107 | 1/CA/2843:2846, 1/CA/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.1 | |
| IL_6U48_108 | 1/CA/2847:2852, 1/CA/2865:2869 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.3 | |
| IL_6U48_109 | 1/CB/17:18, 1/CB/65:67 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_40508.4 | |
| IL_6U48_110 | 1/CB/23:28, 1/CB/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.1 | |
| IL_6U48_111 | 1/CB/30:31, 1/CB/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_357 IL_09061.4 | |
| IL_6U48_112 | 1/CB/33:38, 1/CB/44:49 | No text annotation Not in a motif group | geometric IL_7A0S_105 IL_58346.1 | |
| IL_6U48_113 | 1/CB/71:79, 1/CB/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6U48_001 | 1/CA/30:31, 1/CA/474:481, 1/CA/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_6U48_002 | 1/CA/56:57, 1/CA/70:76, 1/CA/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_6U48_003 | 1/CA/683:689, 1/CA/773:775, 1/CA/791:794 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
| J3_6U48_004 | 1/CA/698:700, 1/CA/732:736, 1/CA/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_6U48_005 | 1/CA/1055:1057, 1/CA/1081:1087, 1/CA/1102:1104 | No text annotation Not in a motif group | homologous J3_5J7L_040 NA | |
| J3_6U48_006 | 1/CA/1298:1303, 1/CA/1625:1627, 1/CA/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_6U48_007 | 1/CA/1306:1309, 1/CA/1605:1611, 1/CA/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_6U48_008 | 1/CA/1344:1349, 1/CA/1382:1385, 1/CA/1402:1403 | No text annotation Not in a motif group | homologous J3_5J7L_043 NA | |
| J3_6U48_009 | 1/CA/2091:2093, 1/CA/2196:2200, 1/CA/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_6U48_010 | 1/CA/2295:2300, 1/CA/2316:2323, 1/CA/2332:2337 | No text annotation Not in a motif group | ||
| J3_6U48_011 | 1/CA/2517:2520, 1/CA/2545:2547, 1/CA/2561:2567 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_6U48_012 | 1/CA/2789:2791, 1/CA/2805:2806, 1/CA/2892:2894 | No text annotation Not in a motif group | ||
| J3_6U48_013 | 1/CA/2812:2815, 1/CA/2831:2836, 1/CA/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
| J3_6U48_014 | 1/CB/10:16, 1/CB/68:70, 1/CB/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA |
Problematic loops
No problematic loops
Coloring options: