3JAJ Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3JAJ_001 | 1/3/12:23 | No text annotation Not in a motif group | ||
| HL_3JAJ_002 | 1/3/30:40 | No text annotation Not in a motif group | homologous HL_5IB8_208 NA | |
| HL_3JAJ_003 | 1/3/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_3ZGZ_003 HL_22280.1 | |
| HL_3JAJ_004 | 1/4/10:17 | No text annotation Not in a motif group | geometric HL_1E8O_001 HL_84085.2 | |
| HL_3JAJ_005 | 1/4/31:40 | No text annotation Not in a motif group | geometric HL_1E8O_002 HL_73255.1 | |
| HL_3JAJ_006 | 1/4/146:151 | Other HL Not in a motif group | homologous HL_1MFQ_001 HL_87030.2 | |
| HL_3JAJ_007 | 1/4/197:202 | GNRA Not in a motif group | homologous HL_1MFQ_002 HL_42097.1 | |
| HL_3JAJ_008 | 1/5/30:52 | No text annotation Not in a motif group | ||
| HL_3JAJ_009 | 1/5/68:73 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_02862.2 | |
| HL_3JAJ_010 | 1/5/89:95 | No text annotation Not in a motif group | ||
| HL_3JAJ_011 | 1/5/131:137 | No text annotation Not in a motif group | ||
| HL_3JAJ_012 | 1/5/204:211 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_3JAJ_013 | 1/5/222:226 | No text annotation Not in a motif group | homologous HL_8C3A_006 HL_98984.2 | |
| HL_3JAJ_014 | 1/5/230:238 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.8 | |
| HL_3JAJ_015 | 1/5/289:298 | No text annotation Not in a motif group | ||
| HL_3JAJ_016 | 1/5/314:323 | No text annotation Not in a motif group | homologous HL_5TBW_009 HL_12078.2 | |
| HL_3JAJ_017 | 1/5/368:373 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.1 | |
| HL_3JAJ_018 | 1/5/393:398 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_42097.1 | |
| HL_3JAJ_019 | 1/5/1178:1183 | GNRA Not in a motif group | geometric HL_6JQ5_004 HL_42097.1 | |
| HL_3JAJ_020 | 1/5/1252:1258 | No text annotation Not in a motif group | geometric HL_4LFB_012 HL_43656.2 | |
| HL_3JAJ_021 | 1/5/1317:1326 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_89380.2 | |
| HL_3JAJ_022 | 1/5/1364:1373 | No text annotation Not in a motif group | ||
| HL_3JAJ_023 | 1/5/1406:1411 | No text annotation Not in a motif group | ||
| HL_3JAJ_024 | 1/5/1436:1448 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_3JAJ_025 | 1/5/1479:1486 | No text annotation Not in a motif group | ||
| HL_3JAJ_026 | 1/5/1561:1566 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_42097.1 | |
| HL_3JAJ_027 | 1/5/1593:1602 | No text annotation Not in a motif group | ||
| HL_3JAJ_028 | 1/5/1626:1636 | No text annotation Not in a motif group | ||
| HL_3JAJ_029 | 1/5/1675:1680 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_3JAJ_030 | 1/5/1763:1769 | GNRA Not in a motif group | homologous HL_5TBW_023 HL_42097.1 | |
| HL_3JAJ_031 | 1/5/1814:1823 | No text annotation Not in a motif group | ||
| HL_3JAJ_032 | 1/5/1863:1871 | No text annotation Not in a motif group | geometric HL_3RG5_006 HL_49288.1 | |
| HL_3JAJ_033 | 1/5/1886:1893 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_3JAJ_034 | 1/5/1977:1989 | No text annotation Not in a motif group | ||
| HL_3JAJ_035 | 1/5/2006:2013 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_3JAJ_036 | 1/5/2130:2244 | No text annotation Not in a motif group | ||
| HL_3JAJ_037 | 1/5/2317:2322 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_3JAJ_038 | 1/5/2376:2384 | No text annotation Not in a motif group | homologous HL_8C3A_031 HL_89380.2 | |
| HL_3JAJ_039 | 1/5/2420:2426 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_46680.1 | |
| HL_3JAJ_040 | 1/5/2458:2463 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_76539.2 | |
| HL_3JAJ_041 | 1/5/2487:2491 | No text annotation Not in a motif group | ||
| HL_3JAJ_042 | 1/5/2523:2532 | No text annotation Not in a motif group | ||
| HL_3JAJ_043 | 1/5/2559:2568 | No text annotation Not in a motif group | ||
| HL_3JAJ_044 | 1/5/2578:2583 | No text annotation Not in a motif group | homologous HL_8C3A_036 HL_42097.1 | |
| HL_3JAJ_045 | 1/5/2623:2632 | No text annotation Not in a motif group | ||
| HL_3JAJ_046 | 1/5/2664:2670 | No text annotation Not in a motif group | homologous HL_8C3A_038 HL_86373.2 | |
| HL_3JAJ_047 | 1/5/2705:2710 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_3JAJ_048 | 1/5/2738:2742 | No text annotation Not in a motif group | homologous HL_8C3A_040 HL_49678.1 | |
| HL_3JAJ_049 | 1/5/2792:2799 | No text annotation Not in a motif group | homologous HL_8C3A_041 HL_64430.2 | |
| HL_3JAJ_050 | 1/5/2810:2816 | No text annotation Not in a motif group | ||
| HL_3JAJ_051 | 1/5/2872:2877 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_3JAJ_052 | 1/5/3614:3618 | No text annotation Not in a motif group | homologous HL_5TBW_045 HL_20062.1 | |
| HL_3JAJ_053 | 1/5/3639:3649 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.5 | |
| HL_3JAJ_054 | 1/5/3667:3675 | No text annotation Not in a motif group | geometric HL_2Y9H_005 HL_47100.1 | |
| HL_3JAJ_055 | 1/5/3723:3729 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_3JAJ_056 | 1/5/3757:3767 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_71924.2 | |
| HL_3JAJ_057 | 1/5/3795:3805 | No text annotation Not in a motif group | ||
| HL_3JAJ_058 | 1/5/3873:3882 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.6 | |
| HL_3JAJ_059 | 1/5/3948:4065 | No text annotation Not in a motif group | ||
| HL_3JAJ_060 | 1/5/4102:4107 | No text annotation Not in a motif group | geometric HL_4LGT_001 HL_03562.2 | |
| HL_3JAJ_061 | 1/5/4139:4145 | No text annotation Not in a motif group | ||
| HL_3JAJ_062 | 1/5/4193:4201 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.2 | |
| HL_3JAJ_063 | 1/5/4210:4222 | No text annotation Not in a motif group | homologous HL_8C3A_056 HL_19870.6 | |
| HL_3JAJ_064 | 1/5/4250:4258 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_3JAJ_065 | 1/5/4301:4309 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_3JAJ_066 | 1/5/4321:4326 | GNRA Not in a motif group | homologous HL_5TBW_059 HL_42097.1 | |
| HL_3JAJ_067 | 1/5/4352:4362 | No text annotation Not in a motif group | geometric HL_4V83_139 HL_53597.2 | |
| HL_3JAJ_068 | 1/5/4417:4425 | No text annotation Not in a motif group | homologous HL_8C3A_062 HL_06192.2 | |
| HL_3JAJ_069 | 1/5/4473:4481 | No text annotation Not in a motif group | geometric HL_7RQB_057 HL_09136.1 | |
| HL_3JAJ_070 | 1/5/4495:4505 | No text annotation Not in a motif group | ||
| HL_3JAJ_071 | 1/5/4540:4545 | No text annotation Not in a motif group | homologous HL_8C3A_065 HL_42097.1 | |
| HL_3JAJ_072 | 1/5/4603:4608 | GNRA Not in a motif group | geometric HL_3LQX_001 HL_42097.1 | |
| HL_3JAJ_073 | 1/5/4644:4653 | No text annotation Not in a motif group | ||
| HL_3JAJ_074 | 1/5/4688:4702 | No text annotation Not in a motif group | ||
| HL_3JAJ_075 | 1/5/4907:4914 | No text annotation Not in a motif group | ||
| HL_3JAJ_076 | 1/5/4972:4986 | No text annotation Not in a motif group | ||
| HL_3JAJ_077 | 1/5/5021:5028 | No text annotation Not in a motif group | ||
| HL_3JAJ_078 | 1/7/36:41 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_3JAJ_079 | 1/7/86:91 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_3JAJ_080 | 1/8/47:56 | No text annotation Not in a motif group | geometric HL_4V9F_001 HL_99167.1 | |
| HL_3JAJ_082 | 1/8/107:112 | No text annotation Not in a motif group | ||
| HL_3JAJ_083 | 1/8/121:129 | No text annotation Not in a motif group | ||
| HL_3JAJ_084 | 1/S2/6:18 | No text annotation Not in a motif group | ||
| HL_3JAJ_085 | 1/S2/69:80 | No text annotation Not in a motif group | ||
| HL_3JAJ_086 | 1/S2/152:166 | No text annotation Not in a motif group | ||
| HL_3JAJ_087 | 1/S2/197:202 | GNRA Not in a motif group | geometric HL_5J7L_007 HL_42097.1 | |
| HL_3JAJ_088 | 1/S2/288:295 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_3JAJ_089 | 1/S2/322:329 | No text annotation Not in a motif group | geometric HL_5TBW_018 HL_34168.2 | |
| HL_3JAJ_090 | 1/S2/376:388 | No text annotation Not in a motif group | ||
| HL_3JAJ_091 | 1/S2/415:423 | No text annotation Not in a motif group | ||
| HL_3JAJ_092 | 1/S2/441:452 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_3JAJ_093 | 1/S2/462:467 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_3JAJ_094 | 1/S2/498:504 | No text annotation Not in a motif group | ||
| HL_3JAJ_095 | 1/S2/539:544 | GNRA Not in a motif group | geometric HL_5J7L_007 HL_42097.1 | |
| HL_3JAJ_096 | 1/S2/566:584 | No text annotation Not in a motif group | ||
| HL_3JAJ_097 | 1/S2/617:624 | No text annotation Not in a motif group | ||
| HL_3JAJ_098 | 1/S2/697:733 | No text annotation Not in a motif group | ||
| HL_3JAJ_100 | 1/S2/833:841 | No text annotation Not in a motif group | ||
| HL_3JAJ_101 | 1/S2/885:901 | No text annotation Not in a motif group | geometric HL_6UFM_001 HL_09136.1 | |
| HL_3JAJ_102 | 1/S2/956:967 | No text annotation Not in a motif group | ||
| HL_3JAJ_103 | 1/S2/1054:1064 | No text annotation Not in a motif group | geometric HL_5J7L_017 HL_12326.1 | |
| HL_3JAJ_104 | 1/S2/1108:1124 | No text annotation Not in a motif group | ||
| HL_3JAJ_105 | 1/S2/1141:1146 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_3JAJ_106 | 1/S2/1178:1183 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_3JAJ_107 | 1/S2/1245:1254 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_3JAJ_108 | 1/S2/1291:1307 | No text annotation Not in a motif group | ||
| HL_3JAJ_109 | 1/S2/1353:1358 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_3JAJ_110 | 1/S2/1366:1373 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_3JAJ_111 | 1/S2/1421:1426 | No text annotation Not in a motif group | ||
| HL_3JAJ_112 | 1/S2/1460:1466 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.1 | |
| HL_3JAJ_113 | 1/S2/1565:1570 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_3JAJ_114 | 1/S2/1614:1625 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_3JAJ_115 | 1/S2/1656:1668 | No text annotation Not in a motif group | ||
| HL_3JAJ_117 | 1/S2/1847:1852 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3JAJ_081 | No text annotation | ||
| HL_3JAJ_099 | No text annotation | ||
| HL_3JAJ_116 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3JAJ_001 | 1/4/52:54, 1/4/292:294 | No text annotation Not in a motif group | geometric IL_1L9A_003 IL_51629.2 | |
| IL_3JAJ_002 | 1/4/55:60, 1/4/287:291 | No text annotation Not in a motif group | ||
| IL_3JAJ_003 | 1/4/116:123, 1/4/227:235 | No text annotation Not in a motif group | ||
| IL_3JAJ_004 | 1/4/132:134, 1/4/163:165 | No text annotation Not in a motif group | homologous IL_1MFQ_003 IL_53251.2 | |
| IL_3JAJ_005 | 1/4/138:141, 1/4/156:159 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_1MFQ_004 IL_30621.2 | |
| IL_3JAJ_006 | 1/4/175:177, 1/4/220:221 | Single bulged A Not in a motif group | geometric IL_1MFQ_005 IL_37497.2 | |
| IL_3JAJ_007 | 1/4/181:187, 1/4/212:216 | No text annotation Not in a motif group | ||
| IL_3JAJ_008 | 1/4/190:195, 1/4/204:209 | tSH-tHW-tHS-cWW Not in a motif group | homologous IL_1MFQ_007 IL_76308.4 | |
| IL_3JAJ_009 | 1/5/6:7, 1/8/149:151 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_3JAJ_010 | 1/5/12:14, 1/8/143:144 | No text annotation Not in a motif group | ||
| IL_3JAJ_011 | 1/5/16:18, 1/8/139:141 | No text annotation Not in a motif group | ||
| IL_3JAJ_012 | 1/5/26:29, 1/5/53:58 | No text annotation Not in a motif group | ||
| IL_3JAJ_013 | 1/5/81:88, 1/5/96:102 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_3JAJ_014 | 1/5/117:122, 1/5/147:154 | No text annotation Not in a motif group | ||
| IL_3JAJ_015 | 1/5/124:126, 1/5/142:145 | No text annotation Not in a motif group | ||
| IL_3JAJ_016 | 1/5/160:162, 1/5/273:276 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_3JAJ_017 | 1/5/168:173, 1/5/263:267 | No text annotation Not in a motif group | ||
| IL_3JAJ_018 | 1/5/180:182, 1/5/255:256 | No text annotation Not in a motif group | ||
| IL_3JAJ_019 | 1/5/184:189, 1/5/252:253 | No text annotation Not in a motif group | ||
| IL_3JAJ_020 | 1/5/199:201, 1/5/214:215 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_3JAJ_021 | 1/5/285:286, 1/5/300:302 | Not an internal loop Not in a motif group | geometric IL_4UYK_002 IL_76488.2 | |
| IL_3JAJ_022 | 1/5/286:288, 1/5/299:300 | No text annotation Not in a motif group | ||
| IL_3JAJ_023 | 1/5/339:342, 1/8/32:33 | Minor groove platform Not in a motif group | geometric IL_7RQB_073 IL_88739.1 | |
| IL_3JAJ_024 | 1/5/348:350, 1/8/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_3JAJ_025 | 1/5/387:390, 1/5/401:414 | No text annotation Not in a motif group | homologous IL_8C3A_015 IL_60992.6 | |
| IL_3JAJ_026 | 1/5/415:421, 1/8/13:19 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_4V9F_001 IL_66414.6 | |
| IL_3JAJ_027 | 1/5/443:446, 1/5/1300:1304 | No text annotation Not in a motif group | ||
| IL_3JAJ_028 | 1/5/459:460, 1/5/695:697 | Single bulged C Not in a motif group | geometric IL_1KUQ_002 IL_61258.12 | |
| IL_3JAJ_029 | 1/5/462:464, 1/5/691:693 | AA cWW Not in a motif group | geometric IL_5ED1_002 IL_95997.1 | |
| IL_3JAJ_030 | 1/5/482:487, 1/5/669:672 | No text annotation Not in a motif group | ||
| IL_3JAJ_031 | 1/5/488:496, 1/5/657:668 | No text annotation Not in a motif group | ||
| IL_3JAJ_032 | 1/5/497:499, 1/5/655:656 | No text annotation Not in a motif group | ||
| IL_3JAJ_033 | 1/5/500:505, 1/5/653:654 | Single stack bend Not in a motif group | geometric IL_4V9F_005 IL_76488.2 | |
| IL_3JAJ_034 | 1/5/508:510, 1/5/649:650 | Single bulged A Not in a motif group | geometric IL_1U63_004 IL_37497.2 | |
| IL_3JAJ_035 | 1/5/511:515, 1/5/646:648 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_1U6B_001 IL_82068.2 | |
| IL_3JAJ_036 | 1/5/708:709, 1/5/1287:1289 | No text annotation Not in a motif group | ||
| IL_3JAJ_037 | 1/5/722:724, 1/5/942:946 | No text annotation Not in a motif group | ||
| IL_3JAJ_038 | 1/5/726:731, 1/5/938:940 | No text annotation Not in a motif group | ||
| IL_3JAJ_039 | 1/5/731:735, 1/5/928:938 | No text annotation Not in a motif group | ||
| IL_3JAJ_040 | 1/5/736:739, 1/5/925:927 | Other IL Not in a motif group | geometric IL_5TBW_064 IL_84698.1 | |
| IL_3JAJ_041 | 1/5/740:742, 1/5/922:924 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_51629.2 | |
| IL_3JAJ_042 | 1/5/745:750, 1/5/912:919 | No text annotation Not in a motif group | ||
| IL_3JAJ_043 | 1/5/750:755, 1/5/908:912 | No text annotation Not in a motif group | ||
| IL_3JAJ_044 | 1/5/989:992, 1/5/1051:1064 | No text annotation Not in a motif group | ||
| IL_3JAJ_045 | 1/5/1074:1079, 1/5/1221:1236 | No text annotation Not in a motif group | ||
| IL_3JAJ_046 | 1/5/1081:1082, 1/5/1217:1219 | No text annotation Not in a motif group | ||
| IL_3JAJ_047 | 1/5/1082:1085, 1/5/1212:1217 | No text annotation Not in a motif group | ||
| IL_3JAJ_048 | 1/5/1086:1087, 1/5/1209:1211 | Single bulged C Not in a motif group | geometric IL_7KGA_001 IL_61258.12 | |
| IL_3JAJ_049 | 1/5/1097:1098, 1/5/1197:1199 | No text annotation Not in a motif group | ||
| IL_3JAJ_050 | 1/5/1172:1177, 1/5/1184:1189 | No text annotation Not in a motif group | ||
| IL_3JAJ_051 | 1/5/1357:1361, 1/5/1376:1382 | No text annotation Not in a motif group | ||
| IL_3JAJ_052 | 1/5/1425:1429, 1/5/1455:1460 | No text annotation Not in a motif group | ||
| IL_3JAJ_053 | 1/5/1431:1434, 1/5/1450:1453 | Double sheared Not in a motif group | geometric IL_1SAQ_002 IL_09705.9 | |
| IL_3JAJ_054 | 1/5/1467:1468, 1/5/1496:1498 | No text annotation Not in a motif group | ||
| IL_3JAJ_055 | 1/5/1474:1478, 1/5/1487:1490 | No text annotation Not in a motif group | ||
| IL_3JAJ_056 | 1/5/1520:1526, 1/5/1648:1657 | No text annotation Not in a motif group | ||
| IL_3JAJ_057 | 1/5/1550:1551, 1/5/1576:1578 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.2 | |
| IL_3JAJ_058 | 1/5/1551:1555, 1/5/1572:1576 | No text annotation Not in a motif group | homologous IL_8C3A_033 IL_56467.8 | |
| IL_3JAJ_059 | 1/5/1586:1589, 1/5/1605:1607 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.2 | |
| IL_3JAJ_060 | 1/5/1590:1592, 1/5/1603:1604 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.13 | |
| IL_3JAJ_061 | 1/5/1624:1626, 1/5/1636:1640 | No text annotation Not in a motif group | ||
| IL_3JAJ_062 | 1/5/1672:1674, 1/5/1681:1682 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_3JAJ_063 | 1/5/1686:1688, 1/5/1848:1851 | No text annotation Not in a motif group | ||
| IL_3JAJ_064 | 1/5/1732:1737, 1/5/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_3JAJ_065 | 1/5/1737:1738, 1/5/1790:1792 | No text annotation Not in a motif group | homologous IL_8C3A_042 IL_42622.2 | |
| IL_3JAJ_066 | 1/5/1739:1744, 1/5/1786:1789 | No text annotation Not in a motif group | homologous IL_8C3A_043 IL_02509.1 | |
| IL_3JAJ_067 | 1/5/1746:1749, 1/5/1781:1784 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.2 | |
| IL_3JAJ_068 | 1/5/1749:1751, 1/5/1779:1781 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_3JAJ_069 | 1/5/1751:1759, 1/5/1773:1779 | No text annotation Not in a motif group | ||
| IL_3JAJ_070 | 1/5/1761:1763, 1/5/1769:1771 | No text annotation Not in a motif group | geometric IL_4V9F_105 IL_95997.1 | |
| IL_3JAJ_071 | 1/5/1858:1860, 1/5/1874:1876 | No text annotation Not in a motif group | ||
| IL_3JAJ_072 | 1/5/1861:1863, 1/5/1871:1873 | Isolated cWS basepair Not in a motif group | geometric IL_5TBW_047 IL_52767.2 | |
| IL_3JAJ_073 | 1/5/1905:1909, 1/5/2067:2071 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_3JAJ_074 | 1/5/1911:1918, 1/5/2064:2065 | No text annotation Not in a motif group | homologous IL_8C3A_052 IL_15861.7 | |
| IL_3JAJ_075 | 1/5/1918:1920, 1/5/2063:2064 | No text annotation Not in a motif group | ||
| IL_3JAJ_076 | 1/5/1920:1922, 1/5/2062:2063 | No text annotation Not in a motif group | ||
| IL_3JAJ_077 | 1/5/1924:1933, 1/5/2053:2060 | No text annotation Not in a motif group | ||
| IL_3JAJ_078 | 1/5/1933:1944, 1/5/2038:2053 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_3JAJ_079 | 1/5/1945:1950, 1/5/2033:2037 | No text annotation Not in a motif group | ||
| IL_3JAJ_080 | 1/5/1957:1965, 1/5/2022:2026 | No text annotation Not in a motif group | ||
| IL_3JAJ_081 | 1/5/1973:1977, 1/5/1989:1993 | No text annotation Not in a motif group | ||
| IL_3JAJ_082 | 1/5/2001:2005, 1/5/2014:2016 | No text annotation Not in a motif group | homologous IL_8C3A_059 IL_05564.2 | |
| IL_3JAJ_083 | 1/5/2083:2085, 1/5/2272:2273 | No text annotation Not in a motif group | ||
| IL_3JAJ_084 | 1/5/2290:2294, 1/5/2340:2345 | No text annotation Not in a motif group | ||
| IL_3JAJ_085 | 1/5/2299:2301, 1/5/2334:2335 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.2 | |
| IL_3JAJ_086 | 1/5/2302:2309, 1/5/2329:2333 | No text annotation Not in a motif group | homologous IL_8C3A_063 IL_70923.2 | |
| IL_3JAJ_087 | 1/5/2310:2314, 1/5/2325:2328 | No text annotation Not in a motif group | ||
| IL_3JAJ_088 | 1/5/2358:2364, 1/5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.2 | |
| IL_3JAJ_089 | 1/5/2415:2419, 1/5/2427:2429 | C-loop Not in a motif group | geometric IL_7A0S_047 IL_37712.2 | |
| IL_3JAJ_090 | 1/5/2446:2450, 1/5/2509:2514 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_3JAJ_091 | 1/5/2477:2479, 1/5/2499:2500 | Single stack bend Not in a motif group | geometric IL_4WF9_007 IL_76488.2 | |
| IL_3JAJ_092 | 1/5/2542:2547, 1/5/2772:2774 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_3JAJ_093 | 1/5/2589:2593, 1/5/2752:2756 | Triple sheared Not in a motif group | homologous IL_5TBW_067 IL_56467.8 | |
| IL_3JAJ_094 | 1/5/2613:2614, 1/5/2724:2726 | Single bulged C Not in a motif group | homologous IL_5TBW_069 IL_61258.12 | |
| IL_3JAJ_095 | 1/5/2614:2615, 1/5/2722:2724 | Single stack bend Not in a motif group | geometric IL_4WF9_007 IL_76488.2 | |
| IL_3JAJ_096 | 1/5/2622:2623, 1/5/2632:2634 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_3JAJ_097 | 1/5/2642:2648, 1/5/2685:2692 | No text annotation Not in a motif group | ||
| IL_3JAJ_098 | 1/5/2651:2653, 1/5/2681:2682 | No text annotation Not in a motif group | ||
| IL_3JAJ_099 | 1/5/2656:2662, 1/5/2672:2678 | No text annotation Not in a motif group | ||
| IL_3JAJ_100 | 1/5/2704:2705, 1/5/2710:2712 | No text annotation Not in a motif group | ||
| IL_3JAJ_101 | 1/5/2832:2838, 1/5/3850:3853 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_49460.2 | |
| IL_3JAJ_102 | 1/5/2844:2846, 1/5/3842:3844 | No text annotation Not in a motif group | ||
| IL_3JAJ_103 | 1/5/2847:2850, 1/5/3840:3841 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5TBW_076 IL_50694.2 | |
| IL_3JAJ_104 | 1/5/2850:2855, 1/5/3837:3840 | Intercalated tWH Not in a motif group | geometric IL_5J7L_307 IL_82842.2 | |
| IL_3JAJ_105 | 1/5/2867:2872, 1/5/2877:2883 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.2 | |
| IL_3JAJ_106 | 1/5/2889:2891, 1/5/3610:3612 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_3JAJ_107 | 1/5/2894:2897, 1/5/3602:3607 | No text annotation Not in a motif group | ||
| IL_3JAJ_108 | 1/5/2901:2905, 1/5/3589:3598 | No text annotation Not in a motif group | ||
| IL_3JAJ_109 | 1/5/3632:3633, 1/5/3827:3829 | No text annotation Not in a motif group | ||
| IL_3JAJ_110 | 1/5/3660:3665, 1/5/3677:3684 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_3JAJ_111 | 1/5/3700:3703, 1/5/3749:3750 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.1 | |
| IL_3JAJ_112 | 1/5/3704:3705, 1/5/3745:3748 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_3JAJ_113 | 1/5/3780:3781, 1/5/3811:3814 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_089 IL_59677.2 | |
| IL_3JAJ_114 | 1/5/3781:3795, 1/5/3805:3811 | No text annotation Not in a motif group | ||
| IL_3JAJ_115 | 1/5/3895:3898, 1/5/4563:4565 | No text annotation Not in a motif group | ||
| IL_3JAJ_116 | 1/5/3898:3902, 1/5/4558:4563 | No text annotation Not in a motif group | ||
| IL_3JAJ_117 | 1/5/3913:3915, 1/5/4388:4389 | Single bulged U Not in a motif group | homologous IL_5TBW_093 IL_83039.13 | |
| IL_3JAJ_118 | 1/5/3916:3917, 1/5/4384:4387 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_3JAJ_119 | 1/5/3927:3929, 1/5/4181:4184 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_095 IL_38958.7 | |
| IL_3JAJ_120 | 1/5/4095:4098, 1/5/4111:4113 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_3JAJ_121 | 1/5/4191:4192, 1/5/4202:4204 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_37497.2 | |
| IL_3JAJ_122 | 1/5/4238:4243, 1/5/4267:4286 | No text annotation Not in a motif group | ||
| IL_3JAJ_123 | 1/5/4243:4245, 1/5/4263:4267 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_099 IL_38958.7 | |
| IL_3JAJ_124 | 1/5/4291:4293, 1/5/4317:4318 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_37497.2 | |
| IL_3JAJ_125 | 1/5/4295:4298, 1/5/4312:4315 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.2 | |
| IL_3JAJ_126 | 1/5/4347:4351, 1/5/4363:4365 | No text annotation Not in a motif group | ||
| IL_3JAJ_127 | 1/5/4401:4403, 1/5/4440:4442 | No text annotation Not in a motif group | ||
| IL_3JAJ_128 | 1/5/4403:4405, 1/5/4439:4440 | No text annotation Not in a motif group | homologous IL_8C3A_112 IL_76223.2 | |
| IL_3JAJ_129 | 1/5/4405:4407, 1/5/4435:4439 | No text annotation Not in a motif group | geometric IL_5TBW_105 IL_92788.2 | |
| IL_3JAJ_130 | 1/5/4412:4416, 1/5/4426:4430 | Triple sheared Not in a motif group | homologous IL_5TBW_106 IL_56467.8 | |
| IL_3JAJ_131 | 1/5/4453:4454, 1/5/4526:4528 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_3JAJ_132 | 1/5/4456:4458, 1/5/4520:4524 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_90933.2 | |
| IL_3JAJ_133 | 1/5/4458:4459, 1/5/4517:4520 | No text annotation Not in a motif group | homologous IL_8C3A_117 IL_71530.2 | |
| IL_3JAJ_134 | 1/5/4472:4473, 1/5/4481:4483 | No text annotation Not in a motif group | ||
| IL_3JAJ_135 | 1/5/4534:4538, 1/5/4547:4552 | No text annotation Not in a motif group | ||
| IL_3JAJ_136 | 1/5/4577:4579, 1/5/4723:4726 | No text annotation Not in a motif group | ||
| IL_3JAJ_137 | 1/5/4579:4582, 1/5/4721:4723 | No text annotation Not in a motif group | ||
| IL_3JAJ_138 | 1/5/4582:4585, 1/5/4717:4721 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.9 | |
| IL_3JAJ_139 | 1/5/4590:4592, 1/5/4618:4620 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_3JAJ_140 | 1/5/4596:4603, 1/5/4608:4614 | No text annotation Not in a motif group | homologous IL_8C3A_125 IL_04346.7 | |
| IL_3JAJ_141 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation Not in a motif group | ||
| IL_3JAJ_142 | 1/5/4631:4637, 1/5/4662:4667 | No text annotation Not in a motif group | ||
| IL_3JAJ_143 | 1/5/4638:4640, 1/5/4659:4661 | No text annotation Not in a motif group | ||
| IL_3JAJ_144 | 1/5/4641:4642, 1/5/4655:4658 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_71530.2 | |
| IL_3JAJ_145 | 1/5/4681:4685, 1/5/4705:4709 | No text annotation Not in a motif group | homologous IL_8C3A_129 IL_89002.2 | |
| IL_3JAJ_146 | 1/5/4739:4746, 1/5/4954:4960 | No text annotation Not in a motif group | ||
| IL_3JAJ_147 | 1/5/4755:4766, 1/5/4868:4878 | No text annotation Not in a motif group | ||
| IL_3JAJ_148 | 1/5/4768:4772, 1/5/4863:4866 | No text annotation Not in a motif group | ||
| IL_3JAJ_149 | 1/5/4891:4896, 1/5/4924:4928 | No text annotation Not in a motif group | ||
| IL_3JAJ_150 | 1/5/4899:4901, 1/5/4920:4921 | No text annotation Not in a motif group | ||
| IL_3JAJ_151 | 1/5/4991:4994, 1/5/5057:5060 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_168 IL_67743.1 | |
| IL_3JAJ_152 | 1/5/4996:4999, 1/5/5051:5055 | No text annotation Not in a motif group | ||
| IL_3JAJ_153 | 1/5/5012:5014, 1/5/5035:5036 | Single bulged C Not in a motif group | geometric IL_4WF9_035 IL_61258.12 | |
| IL_3JAJ_154 | 1/5/5014:5017, 1/5/5032:5035 | No text annotation Not in a motif group | homologous IL_8C3A_141 IL_09705.9 | |
| IL_3JAJ_155 | 1/7/15:16, 1/7/62:64 | No text annotation Not in a motif group | ||
| IL_3JAJ_156 | 1/7/21:27, 1/7/52:57 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_3JAJ_157 | 1/7/28:29, 1/7/48:51 | No text annotation Not in a motif group | ||
| IL_3JAJ_158 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
| IL_3JAJ_159 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_3JAJ_160 | 1/7/79:81, 1/7/95:97 | No text annotation Not in a motif group | geometric IL_4Y1M_005 IL_51629.2 | |
| IL_3JAJ_161 | 1/7/82:85, 1/7/92:94 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_3JAJ_162 | 1/S2/23:29, 1/S2/645:651 | No text annotation Not in a motif group | ||
| IL_3JAJ_163 | 1/S2/34:36, 1/S2/519:521 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_3JAJ_164 | 1/S2/37:40, 1/S2/514:518 | Double sheared Not in a motif group | geometric IL_4WF9_016 IL_09705.9 | |
| IL_3JAJ_165 | 1/S2/41:47, 1/S2/479:481 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_3JAJ_166 | 1/S2/63:68, 1/S2/81:85 | No text annotation Not in a motif group | ||
| IL_3JAJ_167 | 1/S2/108:110, 1/S2/351:353 | No text annotation Not in a motif group | geometric IL_2O3V_001 IL_95997.1 | |
| IL_3JAJ_168 | 1/S2/110:112, 1/S2/349:351 | No text annotation Not in a motif group | ||
| IL_3JAJ_169 | 1/S2/112:115, 1/S2/348:349 | No text annotation Not in a motif group | ||
| IL_3JAJ_170 | 1/S2/116:121, 1/S2/343:347 | No text annotation Not in a motif group | ||
| IL_3JAJ_171 | 1/S2/123:124, 1/S2/339:341 | Not an internal loop Not in a motif group | geometric IL_4UYK_002 IL_76488.2 | |
| IL_3JAJ_172 | 1/S2/145:151, 1/S2/167:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_3JAJ_173 | 1/S2/188:192, 1/S2/207:211 | Triple sheared Not in a motif group | geometric IL_4WFL_001 IL_56467.8 | |
| IL_3JAJ_174 | 1/S2/218:220, 1/S2/301:302 | No text annotation Not in a motif group | ||
| IL_3JAJ_175 | 1/S2/223:288, 1/S2/295:298 | No text annotation Not in a motif group | ||
| IL_3JAJ_176 | 1/S2/317:320, 1/S2/331:333 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_3JAJ_177 | 1/S2/359:364, 1/S2/396:403 | No text annotation Not in a motif group | ||
| IL_3JAJ_178 | 1/S2/366:371, 1/S2/393:394 | No text annotation Not in a motif group | ||
| IL_3JAJ_179 | 1/S2/411:413, 1/S2/424:429 | No text annotation Not in a motif group | homologous IL_8C3A_412 IL_11347.1 | |
| IL_3JAJ_180 | 1/S2/413:415, 1/S2/423:424 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_3JAJ_181 | 1/S2/437:439, 1/S2/454:456 | No text annotation Not in a motif group | ||
| IL_3JAJ_182 | 1/S2/487:489, 1/S2/511:512 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_3JAJ_183 | 1/S2/491:495, 1/S2/508:509 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_3JAJ_184 | 1/S2/495:496, 1/S2/506:508 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_3JAJ_185 | 1/S2/528:530, 1/S2/554:557 | No text annotation Not in a motif group | geometric IL_5UNE_009 IL_53251.2 | |
| IL_3JAJ_186 | 1/S2/530:537, 1/S2/546:554 | No text annotation Not in a motif group | ||
| IL_3JAJ_187 | 1/S2/596:597, 1/S2/639:641 | Single stack bend Not in a motif group | geometric IL_5J7L_269 IL_76488.2 | |
| IL_3JAJ_188 | 1/S2/599:610, 1/S2/633:637 | No text annotation Not in a motif group | ||
| IL_3JAJ_189 | 1/S2/610:617, 1/S2/624:633 | No text annotation Not in a motif group | ||
| IL_3JAJ_190 | 1/S2/663:665, 1/S2/1162:1164 | No text annotation Not in a motif group | ||
| IL_3JAJ_191 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation Not in a motif group | ||
| IL_3JAJ_192 | 1/S2/673:675, 1/S2/1030:1032 | No text annotation Not in a motif group | ||
| IL_3JAJ_193 | 1/S2/676:680, 1/S2/1025:1029 | No text annotation Not in a motif group | ||
| IL_3JAJ_194 | 1/S2/802:803, 1/S2/860:863 | No text annotation Not in a motif group | ||
| IL_3JAJ_195 | 1/S2/803:807, 1/S2/856:860 | No text annotation Not in a motif group | ||
| IL_3JAJ_196 | 1/S2/807:815, 1/S2/849:856 | No text annotation Not in a motif group | homologous IL_4V88_425 IL_69091.1 | |
| IL_3JAJ_197 | 1/S2/816:831, 1/S2/843:848 | No text annotation Not in a motif group | ||
| IL_3JAJ_198 | 1/S2/873:879, 1/S2/907:912 | No text annotation Not in a motif group | geometric IL_6O5F_001 IL_04668.1 | |
| IL_3JAJ_199 | 1/S2/922:923, 1/S2/1019:1022 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.2 | |
| IL_3JAJ_200 | 1/S2/923:927, 1/S2/1014:1019 | No text annotation Not in a motif group | ||
| IL_3JAJ_201 | 1/S2/928:931, 1/S2/1010:1013 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_3JAJ_202 | 1/S2/931:935, 1/S2/1007:1010 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_3JAJ_203 | 1/S2/938:941, 1/S2/985:1004 | No text annotation Not in a motif group | ||
| IL_3JAJ_204 | 1/S2/943:945, 1/S2/981:983 | No text annotation Not in a motif group | geometric IL_3HHN_004 IL_95997.1 | |
| IL_3JAJ_205 | 1/S2/951:956, 1/S2/967:975 | Kink-turn Not in a motif group | geometric IL_4LFB_031 IL_37722.1 | |
| IL_3JAJ_206 | 1/S2/1042:1047, 1/S2/1071:1073 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_3JAJ_207 | 1/S2/1047:1054, 1/S2/1064:1071 | No text annotation Not in a motif group | ||
| IL_3JAJ_208 | 1/S2/1098:1103, 1/S2/1129:1134 | No text annotation Not in a motif group | ||
| IL_3JAJ_209 | 1/S2/1168:1176, 1/S2/1185:1191 | No text annotation Not in a motif group | ||
| IL_3JAJ_210 | 1/S2/1201:1206, 1/S2/1692:1697 | No text annotation Not in a motif group | ||
| IL_3JAJ_211 | 1/S2/1206:1208, 1/S2/1691:1692 | Single bulged G Not in a motif group | geometric IL_5J7L_040 IL_00225.2 | |
| IL_3JAJ_212 | 1/S2/1214:1217, 1/S2/1681:1685 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_3JAJ_213 | 1/S2/1222:1223, 1/S2/1643:1645 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_3JAJ_214 | 1/S2/1230:1233, 1/S2/1525:1528 | No text annotation Not in a motif group | ||
| IL_3JAJ_215 | 1/S2/1235:1236, 1/S2/1521:1523 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_3JAJ_216 | 1/S2/1280:1291, 1/S2/1307:1317 | No text annotation Not in a motif group | ||
| IL_3JAJ_217 | 1/S2/1325:1327, 1/S2/1502:1503 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_3JAJ_218 | 1/S2/1329:1333, 1/S2/1498:1500 | Isolated cWS basepair Not in a motif group | homologous IL_4V88_450 IL_76319.2 | |
| IL_3JAJ_219 | 1/S2/1333:1335, 1/S2/1492:1498 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_451 IL_92788.2 | |
| IL_3JAJ_220 | 1/S2/1337:1340, 1/S2/1486:1490 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_003 IL_30621.2 | |
| IL_3JAJ_221 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_3JAJ_222 | 1/S2/1402:1405, 1/S2/1441:1444 | Minor groove platform Not in a motif group | homologous IL_4V88_456 IL_76458.1 | |
| IL_3JAJ_223 | 1/S2/1407:1413, 1/S2/1433:1439 | No text annotation Not in a motif group | ||
| IL_3JAJ_224 | 1/S2/1415:1419, 1/S2/1428:1431 | No text annotation Not in a motif group | ||
| IL_3JAJ_225 | 1/S2/1453:1456, 1/S2/1470:1475 | No text annotation Not in a motif group | ||
| IL_3JAJ_226 | 1/S2/1550:1558, 1/S2/1577:1582 | No text annotation Not in a motif group | ||
| IL_3JAJ_227 | 1/S2/1560:1563, 1/S2/1572:1575 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1JID_002 IL_30621.2 | |
| IL_3JAJ_228 | 1/S2/1604:1610, 1/S2/1629:1635 | No text annotation Not in a motif group | homologous IL_8C3A_469 IL_10092.1 | |
| IL_3JAJ_229 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_3JAJ_230 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_3JAJ_231 | 1/S2/1706:1708, 1/S2/1826:1828 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_3JAJ_232 | 1/S2/1708:1711, 1/S2/1822:1826 | No text annotation Not in a motif group | ||
| IL_3JAJ_233 | 1/S2/1714:1716, 1/S2/1817:1819 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_3JAJ_234 | 1/S2/1717:1720, 1/S2/1813:1816 | Double sheared Not in a motif group | homologous IL_4V88_468 IL_09705.9 | |
| IL_3JAJ_235 | 1/S2/1720:1723, 1/S2/1811:1813 | Isolated cWS basepair Not in a motif group | geometric IL_4TS2_003 IL_52767.2 | |
| IL_3JAJ_236 | 1/S2/1726:1731, 1/S2/1803:1808 | No text annotation Not in a motif group | ||
| IL_3JAJ_237 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_3JAJ_238 | 1/S2/1739:1741, 1/S2/1793:1795 | No text annotation Not in a motif group | ||
| IL_3JAJ_239 | 1/S2/1742:1746, 1/S2/1788:1792 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 | |
| IL_3JAJ_240 | 1/S2/1749:1752, 1/S2/1780:1785 | No text annotation Not in a motif group | ||
| IL_3JAJ_241 | 1/S2/1839:1842, 1/S2/1857:1859 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3JAJ_001 | 1/4/3:4, 1/4/23:28, 1/4/43:44 | No text annotation Not in a motif group | ||
| J3_3JAJ_002 | 1/4/128:129, 1/4/168:175, 1/4/221:222 | No text annotation Not in a motif group | ||
| J3_3JAJ_003 | 1/5/112:116, 1/5/155:160, 1/5/276:278 | No text annotation Not in a motif group | ||
| J3_3JAJ_004 | 1/5/380:387, 1/5/414:415, 1/8/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_3JAJ_005 | 1/5/1531:1537, 1/5/1622:1624, 1/5/1640:1643 | No text annotation Not in a motif group | ||
| J3_3JAJ_006 | 1/5/1545:1548, 1/5/1580:1584, 1/5/1609:1614 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
| J3_3JAJ_007 | 1/5/1969:1971, 1/5/1995:2001, 1/5/2016:2018 | No text annotation Not in a motif group | homologous J3_5TBW_007 NA | |
| J3_3JAJ_008 | 1/5/2393:2401, 1/5/2803:2807, 1/5/2819:2822 | No text annotation Not in a motif group | ||
| J3_3JAJ_009 | 1/5/2402:2405, 1/5/2785:2791, 1/5/2800:2802 | No text annotation Not in a motif group | ||
| J3_3JAJ_010 | 1/5/2440:2445, 1/5/2515:2519, 1/5/2536:2537 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_3JAJ_011 | 1/5/2575:2578, 1/5/2583:2589, 1/5/2756:2757 | No text annotation Not in a motif group | ||
| J3_3JAJ_012 | 1/5/4091:4095, 1/5/4113:4129, 1/5/4155:4158 | No text annotation Not in a motif group | ||
| J3_3JAJ_013 | 1/5/4970:4972, 1/5/4986:4991, 1/5/5060:5063 | No text annotation Not in a motif group | ||
| J3_3JAJ_014 | 1/7/6:14, 1/7/65:66, 1/7/109:113 | No text annotation Not in a motif group | ||
| J3_3JAJ_015 | 1/8/44:45, 1/8/58:66, 1/8/92:99 | No text annotation Not in a motif group | ||
| J3_3JAJ_016 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation Not in a motif group | ||
| J3_3JAJ_017 | 1/S2/682:685, 1/S2/917:922, 1/S2/1022:1023 | No text annotation Not in a motif group | ||
| J3_3JAJ_018 | 1/S2/1091:1096, 1/S2/1136:1140, 1/S2/1147:1158 | No text annotation Not in a motif group | ||
| J3_3JAJ_019 | 1/S2/1218:1222, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation Not in a motif group | ||
| J3_3JAJ_020 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_3JAJ_021 | 1/S2/1236:1244, 1/S2/1255:1266, 1/S2/1516:1521 | No text annotation Not in a motif group | ||
| J3_3JAJ_022 | 1/S2/1270:1277, 1/S2/1320:1324, 1/S2/1504:1512 | No text annotation Not in a motif group | ||
| J3_3JAJ_023 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_3JAJ_024 | 1/S2/1350:1351, 1/S2/1360:1366, 1/S2/1373:1379 | No text annotation Not in a motif group | ||
| J3_3JAJ_025 | 1/S2/1391:1399, 1/S2/1447:1453, 1/S2/1475:1479 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: