6XIQ Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6XIQ_001 | 1/1/38:45 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.2 | |
| HL_6XIQ_002 | 1/1/69:74 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_6XIQ_003 | 1/1/90:96 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.7 | |
| HL_6XIQ_004 | 1/1/132:137 | No text annotation Not in a motif group | ||
| HL_6XIQ_005 | 1/1/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_6XIQ_006 | 1/1/208:212 | No text annotation Not in a motif group | ||
| HL_6XIQ_007 | 1/1/216:224 | No text annotation Not in a motif group | ||
| HL_6XIQ_008 | 1/1/277:288 | No text annotation Not in a motif group | ||
| HL_6XIQ_009 | 1/1/303:312 | No text annotation Not in a motif group | ||
| HL_6XIQ_010 | 1/1/356:363 | No text annotation Not in a motif group | ||
| HL_6XIQ_011 | 1/1/381:388 | No text annotation Not in a motif group | ||
| HL_6XIQ_013 | 1/1/544:547 | No text annotation Not in a motif group | ||
| HL_6XIQ_014 | 1/1/599:604 | No text annotation Not in a motif group | ||
| HL_6XIQ_015 | 1/1/640:649 | No text annotation Not in a motif group | ||
| HL_6XIQ_016 | 1/1/687:693 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_6XIQ_017 | 1/1/732:737 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_6XIQ_018 | 1/1/763:768 | No text annotation Not in a motif group | ||
| HL_6XIQ_019 | 1/1/844:849 | No text annotation Not in a motif group | ||
| HL_6XIQ_020 | 1/1/876:885 | No text annotation Not in a motif group | ||
| HL_6XIQ_021 | 1/1/910:918 | No text annotation Not in a motif group | homologous HL_8C3A_021 HL_33817.1 | |
| HL_6XIQ_022 | 1/1/958:963 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_94803.1 | |
| HL_6XIQ_023 | 1/1/1023:1029 | No text annotation Not in a motif group | ||
| HL_6XIQ_024 | 1/1/1076:1083 | No text annotation Not in a motif group | homologous HL_8C3A_024 HL_71554.2 | |
| HL_6XIQ_025 | 1/1/1126:1132 | No text annotation Not in a motif group | homologous HL_8C3A_025 HL_42097.1 | |
| HL_6XIQ_026 | 1/1/1149:1155 | No text annotation Not in a motif group | ||
| HL_6XIQ_029 | 1/1/1347:1357 | No text annotation Not in a motif group | ||
| HL_6XIQ_030 | 1/1/1403:1408 | No text annotation Not in a motif group | ||
| HL_6XIQ_031 | 1/1/1462:1470 | No text annotation Not in a motif group | ||
| HL_6XIQ_032 | 1/1/1500:1516 | No text annotation Not in a motif group | ||
| HL_6XIQ_033 | 1/1/1544:1549 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6XIQ_034 | 1/1/1567:1571 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_6XIQ_035 | 1/1/1599:1608 | No text annotation Not in a motif group | ||
| HL_6XIQ_036 | 1/1/1635:1639 | No text annotation Not in a motif group | ||
| HL_6XIQ_037 | 1/1/1679:1689 | No text annotation Not in a motif group | ||
| HL_6XIQ_038 | 1/1/1719:1725 | No text annotation Not in a motif group | ||
| HL_6XIQ_039 | 1/1/1759:1766 | No text annotation Not in a motif group | geometric HL_6MSF_002 HL_38927.2 | |
| HL_6XIQ_040 | 1/1/1792:1796 | No text annotation Not in a motif group | ||
| HL_6XIQ_041 | 1/1/1844:1851 | No text annotation Not in a motif group | geometric HL_2ZNI_001 HL_75407.1 | |
| HL_6XIQ_042 | 1/1/1861:1869 | No text annotation Not in a motif group | ||
| HL_6XIQ_043 | 1/1/1923:1928 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_6XIQ_045 | 1/1/2110:2114 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_20062.1 | |
| HL_6XIQ_046 | 1/1/2134:2146 | No text annotation Not in a motif group | ||
| HL_6XIQ_047 | 1/1/2164:2170 | No text annotation Not in a motif group | ||
| HL_6XIQ_048 | 1/1/2219:2226 | No text annotation Not in a motif group | ||
| HL_6XIQ_049 | 1/1/2253:2263 | No text annotation Not in a motif group | ||
| HL_6XIQ_050 | 1/1/2288:2304 | No text annotation Not in a motif group | ||
| HL_6XIQ_051 | 1/1/2369:2378 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_6XIQ_053 | 1/1/2534:2545 | No text annotation Not in a motif group | ||
| HL_6XIQ_054 | 1/1/2568:2573 | No text annotation Not in a motif group | ||
| HL_6XIQ_055 | 1/1/2616:2624 | No text annotation Not in a motif group | ||
| HL_6XIQ_056 | 1/1/2633:2645 | No text annotation Not in a motif group | homologous HL_8C3A_056 HL_19870.6 | |
| HL_6XIQ_057 | 1/1/2673:2681 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_76406.4 | |
| HL_6XIQ_058 | 1/1/2693:2700 | No text annotation Not in a motif group | ||
| HL_6XIQ_059 | 1/1/2719:2738 | No text annotation Not in a motif group | ||
| HL_6XIQ_060 | 1/1/2744:2749 | No text annotation Not in a motif group | geometric HL_7RQB_011 HL_75407.1 | |
| HL_6XIQ_061 | 1/1/2776:2784 | No text annotation Not in a motif group | ||
| HL_6XIQ_062 | 1/1/2840:2848 | No text annotation Not in a motif group | homologous HL_8C3A_062 HL_06192.2 | |
| HL_6XIQ_063 | 1/1/2896:2905 | No text annotation Not in a motif group | ||
| HL_6XIQ_064 | 1/1/2920:2926 | No text annotation Not in a motif group | ||
| HL_6XIQ_065 | 1/1/2963:2968 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_6XIQ_066 | 1/1/3025:3030 | No text annotation Not in a motif group | geometric HL_4WF9_011 HL_75407.1 | |
| HL_6XIQ_067 | 1/1/3068:3073 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_46680.1 | |
| HL_6XIQ_068 | 1/1/3110:3124 | No text annotation Not in a motif group | ||
| HL_6XIQ_069 | 1/1/3194:3197 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_98426.1 | |
| HL_6XIQ_070 | 1/1/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_6XIQ_071 | 1/1/3350:3353 | No text annotation Not in a motif group | homologous HL_5TBW_071 HL_53837.1 | |
| HL_6XIQ_073 | 1/2/57:90 | No text annotation Not in a motif group | ||
| HL_6XIQ_074 | 1/2/149:165 | No text annotation Not in a motif group | ||
| HL_6XIQ_075 | 1/2/190:196 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6XIQ_077 | 1/2/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_6XIQ_078 | 1/2/276:279 | No text annotation Not in a motif group | geometric HL_5U30_001 HL_53837.1 | |
| HL_6XIQ_079 | 1/2/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_6XIQ_080 | 1/2/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_6XIQ_081 | 1/2/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6XIQ_082 | 1/2/415:419 | No text annotation Not in a motif group | ||
| HL_6XIQ_083 | 1/2/450:456 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_6XIQ_085 | 1/2/520:532 | No text annotation Not in a motif group | ||
| HL_6XIQ_093 | 1/2/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6XIQ_096 | 1/2/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_6XIQ_106 | 1/2/1594:1602 | No text annotation Not in a motif group | ||
| HL_6XIQ_109 | 1/3/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
| HL_6XIQ_110 | 1/3/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_6XIQ_111 | 1/4/47:56 | No text annotation Not in a motif group | ||
| HL_6XIQ_113 | 1/4/107:115 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_6XIQ_114 | 1/4/123:130 | No text annotation Not in a motif group | ||
| HL_6XIQ_115 | 1/AX/13:22 | No text annotation Not in a motif group | homologous HL_2AKE_001 NA | |
| HL_6XIQ_116 | 1/AX/30:40 | No text annotation Not in a motif group | ||
| HL_6XIQ_117 | 1/AX/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4RDX_003 HL_22280.1 | |
| HL_6XIQ_118 | 1/AZ/13:22 | No text annotation Not in a motif group | homologous HL_4TUE_033 HL_25462.2 | |
| HL_6XIQ_119 | 1/AZ/30:40 | No text annotation Not in a motif group | ||
| HL_6XIQ_120 | 1/AZ/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4RDX_003 HL_22280.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6XIQ_012 | No text annotation | ||
| HL_6XIQ_027 | No text annotation | ||
| HL_6XIQ_028 | No text annotation | ||
| HL_6XIQ_044 | No text annotation | ||
| HL_6XIQ_052 | No text annotation | ||
| HL_6XIQ_072 | No text annotation | ||
| HL_6XIQ_076 | No text annotation | ||
| HL_6XIQ_084 | No text annotation | ||
| HL_6XIQ_086 | Other HL | ||
| HL_6XIQ_087 | No text annotation | ||
| HL_6XIQ_088 | No text annotation | ||
| HL_6XIQ_089 | No text annotation | ||
| HL_6XIQ_090 | No text annotation | ||
| HL_6XIQ_091 | No text annotation | ||
| HL_6XIQ_092 | No text annotation | ||
| HL_6XIQ_094 | No text annotation | ||
| HL_6XIQ_095 | No text annotation | ||
| HL_6XIQ_097 | GNRA | ||
| HL_6XIQ_098 | No text annotation | ||
| HL_6XIQ_099 | No text annotation | ||
| HL_6XIQ_100 | GNRA | ||
| HL_6XIQ_101 | No text annotation | ||
| HL_6XIQ_102 | No text annotation | ||
| HL_6XIQ_103 | No text annotation | ||
| HL_6XIQ_104 | No text annotation | ||
| HL_6XIQ_105 | No text annotation | ||
| HL_6XIQ_107 | No text annotation | ||
| HL_6XIQ_108 | No text annotation | ||
| HL_6XIQ_112 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6XIQ_001 | 1/1/7:8, 1/4/150:152 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_6XIQ_002 | 1/1/13:15, 1/4/144:145 | Single bulged U Not in a motif group | homologous IL_5TBW_003 IL_83039.13 | |
| IL_6XIQ_003 | 1/1/31:38, 1/1/45:53 | No text annotation Not in a motif group | homologous IL_8C3A_005 IL_35728.2 | |
| IL_6XIQ_004 | 1/1/82:89, 1/1/97:103 | No text annotation Not in a motif group | ||
| IL_6XIQ_005 | 1/1/125:127, 1/1/141:143 | No text annotation Not in a motif group | ||
| IL_6XIQ_006 | 1/1/128:132, 1/1/137:140 | No text annotation Not in a motif group | ||
| IL_6XIQ_007 | 1/1/163:166, 1/1/256:258 | No text annotation Not in a motif group | ||
| IL_6XIQ_008 | 1/1/169:171, 1/1/247:253 | No text annotation Not in a motif group | ||
| IL_6XIQ_009 | 1/1/176:179, 1/1/237:242 | No text annotation Not in a motif group | ||
| IL_6XIQ_010 | 1/1/189:191, 1/1/204:205 | Single bulged U Not in a motif group | homologous IL_5TBW_012 IL_83039.13 | |
| IL_6XIQ_011 | 1/1/215:216, 1/1/224:226 | No text annotation Not in a motif group | ||
| IL_6XIQ_012 | 1/1/429:433, 1/1/626:630 | No text annotation Not in a motif group | ||
| IL_6XIQ_013 | 1/1/511:513, 1/1/577:580 | No text annotation Not in a motif group | ||
| IL_6XIQ_014 | 1/1/517:525, 1/1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_6XIQ_015 | 1/1/531:538, 1/1/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_6XIQ_016 | 1/1/663:665, 1/1/796:799 | No text annotation Not in a motif group | ||
| IL_6XIQ_017 | 1/1/665:667, 1/1/795:796 | No text annotation Not in a motif group | ||
| IL_6XIQ_018 | 1/1/667:671, 1/1/791:795 | No text annotation Not in a motif group | ||
| IL_6XIQ_019 | 1/1/678:684, 1/1/696:702 | No text annotation Not in a motif group | ||
| IL_6XIQ_020 | 1/1/724:729, 1/1/740:746 | No text annotation Not in a motif group | ||
| IL_6XIQ_021 | 1/1/752:753, 1/1/779:781 | No text annotation Not in a motif group | ||
| IL_6XIQ_022 | 1/1/753:757, 1/1/774:779 | No text annotation Not in a motif group | ||
| IL_6XIQ_023 | 1/1/757:763, 1/1/768:774 | No text annotation Not in a motif group | ||
| IL_6XIQ_024 | 1/1/804:805, 1/1/938:940 | No text annotation Not in a motif group | ||
| IL_6XIQ_025 | 1/1/805:809, 1/1/931:938 | No text annotation Not in a motif group | ||
| IL_6XIQ_026 | 1/1/869:872, 1/1/888:890 | No text annotation Not in a motif group | ||
| IL_6XIQ_027 | 1/1/873:875, 1/1/886:887 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.13 | |
| IL_6XIQ_028 | 1/1/907:909, 1/1/919:923 | No text annotation Not in a motif group | homologous IL_8C3A_036 IL_90991.6 | |
| IL_6XIQ_029 | 1/1/955:958, 1/1/963:965 | No text annotation Not in a motif group | geometric IL_4WSM_372 IL_33061.1 | |
| IL_6XIQ_030 | 1/1/969:972, 1/1/1108:1113 | No text annotation Not in a motif group | ||
| IL_6XIQ_031 | 1/1/972:975, 1/1/1106:1108 | Other IL Not in a motif group | geometric IL_5TBW_064 IL_84698.1 | |
| IL_6XIQ_032 | 1/1/977:981, 1/1/1102:1104 | No text annotation Not in a motif group | ||
| IL_6XIQ_033 | 1/1/991:997, 1/1/1052:1058 | No text annotation Not in a motif group | ||
| IL_6XIQ_034 | 1/1/997:999, 1/1/1049:1052 | No text annotation Not in a motif group | ||
| IL_6XIQ_035 | 1/1/999:1005, 1/1/1045:1049 | No text annotation Not in a motif group | ||
| IL_6XIQ_036 | 1/1/1005:1009, 1/1/1041:1045 | No text annotation Not in a motif group | homologous IL_8C3A_044 IL_05145.2 | |
| IL_6XIQ_037 | 1/1/1009:1011, 1/1/1039:1041 | No text annotation Not in a motif group | homologous IL_8C3A_045 IL_95997.1 | |
| IL_6XIQ_038 | 1/1/1014:1020, 1/1/1032:1036 | No text annotation Not in a motif group | ||
| IL_6XIQ_039 | 1/1/1069:1072, 1/1/1086:1089 | No text annotation Not in a motif group | ||
| IL_6XIQ_040 | 1/1/1074:1076, 1/1/1083:1084 | No text annotation Not in a motif group | homologous IL_8C3A_048 IL_00225.2 | |
| IL_6XIQ_041 | 1/1/1120:1121, 1/1/1136:1138 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_6XIQ_042 | 1/1/1121:1125, 1/1/1133:1136 | No text annotation Not in a motif group | ||
| IL_6XIQ_043 | 1/1/1147:1149, 1/1/1155:1156 | No text annotation Not in a motif group | ||
| IL_6XIQ_044 | 1/1/1167:1171, 1/1/1328:1332 | No text annotation Not in a motif group | ||
| IL_6XIQ_045 | 1/1/1172:1183, 1/1/1323:1327 | No text annotation Not in a motif group | ||
| IL_6XIQ_046 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation Not in a motif group | ||
| IL_6XIQ_047 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation Not in a motif group | ||
| IL_6XIQ_048 | 1/1/1207:1209, 1/1/1296:1297 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.13 | |
| IL_6XIQ_049 | 1/1/1218:1226, 1/1/1283:1287 | No text annotation Not in a motif group | ||
| IL_6XIQ_052 | 1/1/1376:1381, 1/1/1425:1431 | No text annotation Not in a motif group | ||
| IL_6XIQ_053 | 1/1/1383:1387, 1/1/1420:1423 | No text annotation Not in a motif group | ||
| IL_6XIQ_054 | 1/1/1388:1402, 1/1/1409:1419 | No text annotation Not in a motif group | ||
| IL_6XIQ_055 | 1/1/1444:1450, 1/1/2354:2359 | No text annotation Not in a motif group | ||
| IL_6XIQ_056 | 1/1/1485:1487, 1/1/1854:1857 | No text annotation Not in a motif group | ||
| IL_6XIQ_057 | 1/1/1492:1494, 1/1/1835:1836 | No text annotation Not in a motif group | ||
| IL_6XIQ_058 | 1/1/1532:1536, 1/1/1585:1590 | No text annotation Not in a motif group | ||
| IL_6XIQ_059 | 1/1/1561:1562, 1/1/1577:1579 | No text annotation Not in a motif group | ||
| IL_6XIQ_060 | 1/1/1565:1566, 1/1/1572:1574 | Single stack bend Not in a motif group | geometric IL_5VSU_003 IL_76488.2 | |
| IL_6XIQ_061 | 1/1/1618:1621, 1/1/1824:1826 | No text annotation Not in a motif group | geometric IL_5B2P_002 IL_95997.1 | |
| IL_6XIQ_062 | 1/1/1623:1624, 1/1/1819:1822 | No text annotation Not in a motif group | ||
| IL_6XIQ_063 | 1/1/1625:1631, 1/1/1811:1818 | No text annotation Not in a motif group | ||
| IL_6XIQ_064 | 1/1/1633:1635, 1/1/1639:1640 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6XIQ_065 | 1/1/1661:1663, 1/1/1786:1788 | No text annotation Not in a motif group | ||
| IL_6XIQ_066 | 1/1/1669:1670, 1/1/1778:1780 | Single bulged C Not in a motif group | geometric IL_5TBW_069 IL_61258.12 | |
| IL_6XIQ_067 | 1/1/1670:1672, 1/1/1775:1778 | No text annotation Not in a motif group | ||
| IL_6XIQ_068 | 1/1/1701:1707, 1/1/1737:1744 | No text annotation Not in a motif group | ||
| IL_6XIQ_069 | 1/1/1711:1718, 1/1/1726:1733 | No text annotation Not in a motif group | ||
| IL_6XIQ_070 | 1/1/1883:1889, 1/1/2346:2349 | No text annotation Not in a motif group | homologous IL_8C3A_080 IL_49460.2 | |
| IL_6XIQ_071 | 1/1/1895:1897, 1/1/2338:2340 | No text annotation Not in a motif group | homologous IL_8C3A_081 IL_54997.7 | |
| IL_6XIQ_072 | 1/1/1898:1901, 1/1/2336:2337 | Minor groove platform with intercalation Not in a motif group | geometric IL_5TBW_111 IL_95601.3 | |
| IL_6XIQ_073 | 1/1/1917:1923, 1/1/1928:1935 | No text annotation Not in a motif group | ||
| IL_6XIQ_074 | 1/1/1940:1942, 1/1/2106:2108 | No text annotation Not in a motif group | ||
| IL_6XIQ_075 | 1/1/1947:1948, 1/1/2098:2101 | No text annotation Not in a motif group | ||
| IL_6XIQ_076 | 1/1/1951:1953, 1/1/2094:2095 | No text annotation Not in a motif group | ||
| IL_6XIQ_077 | 1/1/2128:2130, 1/1/2322:2325 | No text annotation Not in a motif group | geometric IL_4V9K_064 IL_95997.1 | |
| IL_6XIQ_078 | 1/1/2156:2161, 1/1/2173:2180 | No text annotation Not in a motif group | ||
| IL_6XIQ_079 | 1/1/2196:2199, 1/1/2245:2246 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_88739.1 | |
| IL_6XIQ_080 | 1/1/2200:2202, 1/1/2240:2244 | No text annotation Not in a motif group | ||
| IL_6XIQ_081 | 1/1/2204:2206, 1/1/2237:2238 | No text annotation Not in a motif group | ||
| IL_6XIQ_082 | 1/1/2206:2210, 1/1/2235:2237 | No text annotation Not in a motif group | ||
| IL_6XIQ_083 | 1/1/2210:2217, 1/1/2228:2235 | No text annotation Not in a motif group | ||
| IL_6XIQ_084 | 1/1/2276:2278, 1/1/2307:2310 | No text annotation Not in a motif group | ||
| IL_6XIQ_085 | 1/1/2278:2288, 1/1/2304:2307 | No text annotation Not in a motif group | ||
| IL_6XIQ_086 | 1/1/2391:2394, 1/1/2986:2988 | No text annotation Not in a motif group | ||
| IL_6XIQ_087 | 1/1/2407:2409, 1/1/2812:2814 | No text annotation Not in a motif group | ||
| IL_6XIQ_088 | 1/1/2409:2411, 1/1/2811:2812 | Single bulged U Not in a motif group | geometric IL_2OIU_003 IL_83039.13 | |
| IL_6XIQ_089 | 1/1/2412:2413, 1/1/2807:2810 | Multiple bulged bases Not in a motif group | geometric IL_6JXM_001 IL_69996.1 | |
| IL_6XIQ_093 | 1/1/2519:2526, 1/1/2584:2588 | No text annotation Not in a motif group | ||
| IL_6XIQ_094 | 1/1/2614:2615, 1/1/2625:2627 | No text annotation Not in a motif group | ||
| IL_6XIQ_095 | 1/1/2666:2668, 1/1/2686:2690 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_5TBW_099 IL_38958.7 | |
| IL_6XIQ_096 | 1/1/2716:2718, 1/1/2739:2740 | No text annotation Not in a motif group | ||
| IL_6XIQ_097 | 1/1/2770:2776, 1/1/2784:2788 | No text annotation Not in a motif group | ||
| IL_6XIQ_098 | 1/1/2833:2839, 1/1/2849:2855 | No text annotation Not in a motif group | ||
| IL_6XIQ_099 | 1/1/2875:2878, 1/1/2948:2952 | No text annotation Not in a motif group | ||
| IL_6XIQ_100 | 1/1/2879:2881, 1/1/2943:2947 | No text annotation Not in a motif group | ||
| IL_6XIQ_101 | 1/1/2881:2884, 1/1/2938:2943 | No text annotation Not in a motif group | ||
| IL_6XIQ_102 | 1/1/2889:2893, 1/1/2908:2914 | No text annotation Not in a motif group | ||
| IL_6XIQ_103 | 1/1/2918:2920, 1/1/2926:2928 | No text annotation Not in a motif group | ||
| IL_6XIQ_104 | 1/1/2960:2961, 1/1/2970:2972 | No text annotation Not in a motif group | homologous IL_8C3A_122 IL_37497.2 | |
| IL_6XIQ_105 | 1/1/3004:3008, 1/1/3138:3144 | No text annotation Not in a motif group | ||
| IL_6XIQ_106 | 1/1/3012:3014, 1/1/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_6XIQ_107 | 1/1/3047:3053, 1/1/3089:3094 | No text annotation Not in a motif group | ||
| IL_6XIQ_108 | 1/1/3053:3059, 1/1/3084:3089 | No text annotation Not in a motif group | ||
| IL_6XIQ_109 | 1/1/3062:3065, 1/1/3076:3081 | No text annotation Not in a motif group | ||
| IL_6XIQ_110 | 1/1/3103:3107, 1/1/3127:3131 | No text annotation Not in a motif group | ||
| IL_6XIQ_111 | 1/1/3164:3168, 1/1/3281:3286 | No text annotation Not in a motif group | ||
| IL_6XIQ_112 | 1/1/3168:3170, 1/1/3280:3281 | Single stack bend Not in a motif group | geometric IL_5TBW_009 IL_76488.2 | |
| IL_6XIQ_113 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A Not in a motif group | homologous IL_5TBW_123 IL_37497.2 | |
| IL_6XIQ_114 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation Not in a motif group | geometric IL_5TBW_124 IL_15174.1 | |
| IL_6XIQ_115 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U Not in a motif group | homologous IL_5TBW_125 IL_83039.13 | |
| IL_6XIQ_116 | 1/1/3225:3233, 1/1/3254:3260 | No text annotation Not in a motif group | ||
| IL_6XIQ_117 | 1/1/3233:3235, 1/1/3253:3254 | No text annotation Not in a motif group | ||
| IL_6XIQ_118 | 1/1/3235:3238, 1/1/3249:3253 | No text annotation Not in a motif group | ||
| IL_6XIQ_119 | 1/1/3340:3342, 1/1/3363:3364 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 | |
| IL_6XIQ_120 | 1/1/3342:3345, 1/1/3360:3363 | No text annotation Not in a motif group | ||
| IL_6XIQ_121 | 1/1/3349:3350, 1/1/3353:3356 | No text annotation Not in a motif group | homologous IL_8C3A_142 IL_59677.2 | |
| IL_6XIQ_122 | 1/2/22:26, 1/2/600:603 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_001 IL_30621.2 | |
| IL_6XIQ_123 | 1/2/35:37, 1/2/471:473 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_6XIQ_124 | 1/2/37:41, 1/2/466:471 | Triple sheared Not in a motif group | geometric IL_7A0S_087 IL_56467.8 | |
| IL_6XIQ_125 | 1/2/42:48, 1/2/431:433 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_6XIQ_126 | 1/2/50:52, 1/2/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_6XIQ_127 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_6XIQ_128 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_6XIQ_129 | 1/2/117:122, 1/2/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_6XIQ_130 | 1/2/143:149, 1/2/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_6XIQ_131 | 1/2/186:190, 1/2/196:199 | No text annotation Not in a motif group | ||
| IL_6XIQ_132 | 1/2/204:210, 1/2/255:263 | No text annotation Not in a motif group | ||
| IL_6XIQ_133 | 1/2/210:212, 1/2/254:255 | No text annotation Not in a motif group | ||
| IL_6XIQ_134 | 1/2/212:213, 1/2/252:254 | Single stack bend Not in a motif group | geometric IL_7RQB_058 IL_76488.2 | |
| IL_6XIQ_135 | 1/2/265:267, 1/2/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_6XIQ_136 | 1/2/270:274, 1/2/282:285 | No text annotation Not in a motif group | ||
| IL_6XIQ_137 | 1/2/274:276, 1/2/279:282 | No text annotation Not in a motif group | geometric IL_4P3U_001 IL_51629.2 | |
| IL_6XIQ_138 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6XIQ_139 | 1/2/317:323, 1/2/345:347 | No text annotation Not in a motif group | ||
| IL_6XIQ_141 | 1/2/411:413, 1/2/421:422 | No text annotation Not in a motif group | ||
| IL_6XIQ_142 | 1/2/413:415, 1/2/419:421 | No text annotation Not in a motif group | ||
| IL_6XIQ_143 | 1/2/439:441, 1/2/463:464 | Single bulged U Not in a motif group | geometric IL_4LFB_014 IL_83039.13 | |
| IL_6XIQ_144 | 1/2/443:447, 1/2/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6XIQ_145 | 1/2/447:448, 1/2/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6XIQ_146 | 1/2/481:482, 1/2/505:507 | Single bulged A Not in a motif group | homologous IL_4V88_409 IL_37497.2 | |
| IL_6XIQ_149 | 1/2/514:516, 1/2/536:543 | No text annotation Not in a motif group | ||
| IL_6XIQ_150 | 1/2/516:518, 1/2/533:536 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
| IL_6XIQ_151 | 1/2/518:520, 1/2/532:533 | Minor groove platform Not in a motif group | homologous IL_4V88_412 IL_93353.1 | |
| IL_6XIQ_155 | 1/2/616:622, 1/2/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_6XIQ_156 | 1/2/624:626, 1/2/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6XIQ_157 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_6XIQ_164 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_6N5P_003 IL_50694.2 | |
| IL_6XIQ_165 | 1/2/867:870, 1/2/957:961 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_30621.2 | |
| IL_6XIQ_166 | 1/2/871:874, 1/2/953:956 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_430 IL_30621.2 | |
| IL_6XIQ_167 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.2 | |
| IL_6XIQ_168 | 1/2/885:888, 1/2/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_6XIQ_172 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6XIQ_173 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_6XIQ_174 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_6XIQ_178 | 1/2/1157:1160, 1/2/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_6XIQ_179 | 1/2/1173:1175, 1/2/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_6XIQ_180 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_6XIQ_213 | 1/3/15:16, 1/3/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_6XIQ_214 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_5TBW_376 IL_58103.6 | |
| IL_6XIQ_215 | 1/3/72:80, 1/3/100:106 | No text annotation Not in a motif group | ||
| IL_6XIQ_216 | 1/3/80:87, 1/3/94:100 | No text annotation Not in a motif group | ||
| IL_6XIQ_217 | 1/4/64:68, 1/4/91:96 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6XIQ_050 | No text annotation | ||
| IL_6XIQ_051 | No text annotation | ||
| IL_6XIQ_090 | No text annotation | ||
| IL_6XIQ_091 | No text annotation | ||
| IL_6XIQ_092 | No text annotation | ||
| IL_6XIQ_140 | No text annotation | ||
| IL_6XIQ_147 | No text annotation | ||
| IL_6XIQ_148 | No text annotation | ||
| IL_6XIQ_152 | SSU/LSU pseudoknot | ||
| IL_6XIQ_153 | Single bulged U | ||
| IL_6XIQ_154 | No text annotation | ||
| IL_6XIQ_158 | No text annotation | ||
| IL_6XIQ_159 | No text annotation | ||
| IL_6XIQ_160 | Minor groove platform | ||
| IL_6XIQ_161 | Tandem non-canonical cWW pairs | ||
| IL_6XIQ_162 | No text annotation | ||
| IL_6XIQ_163 | No text annotation | ||
| IL_6XIQ_169 | No text annotation | ||
| IL_6XIQ_170 | Other IL | ||
| IL_6XIQ_171 | tSH-tHW-tHS | ||
| IL_6XIQ_175 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_6XIQ_176 | Single bulged A | ||
| IL_6XIQ_177 | Single bulged G | ||
| IL_6XIQ_181 | No text annotation | ||
| IL_6XIQ_182 | No text annotation | ||
| IL_6XIQ_183 | No text annotation | ||
| IL_6XIQ_184 | Single bulged U | ||
| IL_6XIQ_185 | Tandem non-canonical cWW pairs | ||
| IL_6XIQ_186 | Minor groove platform with extra cWW | ||
| IL_6XIQ_187 | Single bulged A | ||
| IL_6XIQ_188 | Isolated cWH basepair | ||
| IL_6XIQ_189 | Minor groove platform | ||
| IL_6XIQ_190 | No text annotation | ||
| IL_6XIQ_191 | No text annotation | ||
| IL_6XIQ_192 | No text annotation | ||
| IL_6XIQ_193 | No text annotation | ||
| IL_6XIQ_194 | No text annotation | ||
| IL_6XIQ_195 | No text annotation | ||
| IL_6XIQ_196 | No text annotation | ||
| IL_6XIQ_197 | No text annotation | ||
| IL_6XIQ_198 | No text annotation | ||
| IL_6XIQ_199 | No text annotation | ||
| IL_6XIQ_200 | No text annotation | ||
| IL_6XIQ_201 | No text annotation | ||
| IL_6XIQ_202 | AA cWW | ||
| IL_6XIQ_203 | tWS-tSW | ||
| IL_6XIQ_204 | Single bulged U | ||
| IL_6XIQ_205 | No text annotation | ||
| IL_6XIQ_206 | Double sheared | ||
| IL_6XIQ_207 | No text annotation | ||
| IL_6XIQ_208 | No text annotation | ||
| IL_6XIQ_209 | No text annotation | ||
| IL_6XIQ_210 | No text annotation | ||
| IL_6XIQ_211 | No text annotation | ||
| IL_6XIQ_212 | Single stack bend |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6XIQ_001 | 1/1/501:503, 1/1/588:597, 1/1/606:612 | No text annotation Not in a motif group | ||
| J3_6XIQ_003 | 1/1/1478:1485, 1/1/1857:1860, 1/1/1870:1875 | No text annotation Not in a motif group | ||
| J3_6XIQ_004 | 1/1/1487:1491, 1/1/1837:1843, 1/1/1852:1854 | No text annotation Not in a motif group | ||
| J3_6XIQ_005 | 1/1/1494:1497, 1/1/1519:1527, 1/1/1833:1835 | No text annotation Not in a motif group | ||
| J3_6XIQ_006 | 1/1/1537:1542, 1/1/1551:1561, 1/1/1579:1584 | No text annotation Not in a motif group | ||
| J3_6XIQ_007 | 1/1/1631:1632, 1/1/1641:1650, 1/1/1805:1811 | No text annotation Not in a motif group | ||
| J3_6XIQ_008 | 1/1/2651:2653, 1/1/2754:2768, 1/1/2790:2798 | No text annotation Not in a motif group | ||
| J3_6XIQ_009 | 1/1/2664:2666, 1/1/2690:2692, 1/1/2701:2706 | No text annotation Not in a motif group | ||
| J3_6XIQ_010 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation Not in a motif group | ||
| J3_6XIQ_011 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation Not in a motif group | ||
| J3_6XIQ_012 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation Not in a motif group | ||
| J3_6XIQ_013 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_6XIQ_014 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_6XIQ_015 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation Not in a motif group | ||
| J3_6XIQ_016 | 1/2/1168:1171, 1/2/1468:1470, 1/2/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_6XIQ_022 | 1/2/1470:1474, 1/2/1533:1540, 1/2/1571:1574 | No text annotation Not in a motif group | ||
| J3_6XIQ_023 | 1/3/9:14, 1/3/66:69, 1/3/109:112 | No text annotation Not in a motif group | ||
| J3_6XIQ_024 | 1/4/43:47, 1/4/56:64, 1/4/96:102 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6XIQ_002 | No text annotation | ||
| J3_6XIQ_017 | No text annotation | ||
| J3_6XIQ_018 | No text annotation | ||
| J3_6XIQ_019 | No text annotation | ||
| J3_6XIQ_020 | No text annotation | ||
| J3_6XIQ_021 | No text annotation |
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