6GSL Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6GSL_001 | 1/13/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_6GSL_003 | 1/13/156:165 | No text annotation Not in a motif group | ||
| HL_6GSL_004 | 1/13/186F:191A | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_10278.1 | |
| HL_6GSL_005 | 1/13/200:217 | No text annotation Not in a motif group | homologous HL_6CZR_076 HL_34168.2 | |
| HL_6GSL_006 | 1/13/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_6GSL_007 | 1/13/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_6GSL_008 | 1/13/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_6GSL_010 | 1/13/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_6GSL_011 | 1/13/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_6GSL_012 | 1/13/458:474 | No text annotation Not in a motif group | homologous HL_6CZR_083 HL_43656.2 | |
| HL_6GSL_013 | 1/13/522:527 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_6GSL_014 | 1/13/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_6GSL_015 | 1/13/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_6GSL_016 | 1/13/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_6GSL_017 | 1/13/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_6GSL_018 | 1/13/838:848 | No text annotation Not in a motif group | ||
| HL_6GSL_019 | 1/13/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_6GSL_020 | 1/13/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_6GSL_021 | 1/13/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_6GSL_022 | 1/13/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_6GSL_023 | 1/13/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_6GSL_024 | 1/13/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_6GSL_025 | 1/13/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_6GSL_026 | 1/13/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_6GSL_027 | 1/13/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_6GSL_028 | 1/13/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_6GSL_029 | 1/13/1356:1366 | No text annotation Not in a motif group | ||
| HL_6GSL_030 | 1/13/1449:1454 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
| HL_6GSL_031 | 1/13/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_6GSL_032 | 1/14/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_6GSL_033 | 1/14/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_6GSL_034 | 1/14/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
| HL_6GSL_035 | 1/14/137A:141A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_6GSL_037 | 1/14/194:201 | No text annotation Not in a motif group | geometric HL_7A0S_006 HL_06192.2 | |
| HL_6GSL_038 | 1/14/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_6GSL_039 | 1/14/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_6GSL_040 | 1/14/270K:270N | No text annotation Not in a motif group | ||
| HL_6GSL_041 | 1/14/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_6GSL_042 | 1/14/319:323 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_75407.1 | |
| HL_6GSL_043 | 1/14/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
| HL_6GSL_044 | 1/14/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_6GSL_045 | 1/14/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_6GSL_046 | 1/14/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_6GSL_047 | 1/14/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_6GSL_048 | 1/14/544:549 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_6GSL_049 | 1/14/566:575 | No text annotation Not in a motif group | homologous HL_7RQB_018 HL_89380.2 | |
| HL_6GSL_050 | 1/14/611:617 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
| HL_6GSL_051 | 1/14/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_6GSL_052 | 1/14/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.1 | |
| HL_6GSL_053 | 1/14/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_6GSL_054 | 1/14/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_6GSL_055 | 1/14/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
| HL_6GSL_056 | 1/14/826:831 | No text annotation Not in a motif group | homologous HL_5J7L_157 HL_64365.1 | |
| HL_6GSL_058 | 1/14/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_6GSL_059 | 1/14/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_6GSL_062 | 1/14/1168:1181 | No text annotation Not in a motif group | ||
| HL_6GSL_063 | 1/14/1223:1228 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_6GSL_064 | 1/14/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_6GSL_065 | 1/14/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_6GSL_066 | 1/14/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_6GSL_067 | 1/14/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_6GSL_068 | 1/14/1451:1459 | No text annotation Not in a motif group | homologous HL_7RQB_037 HL_32426.1 | |
| HL_6GSL_069 | 1/14/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_6GSL_070 | 1/14/1533:1538 | No text annotation Not in a motif group | ||
| HL_6GSL_071 | 1/14/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_6GSL_072 | 1/14/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_6GSL_073 | 1/14/1630A:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_6GSL_074 | 1/14/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_03562.2 | |
| HL_6GSL_075 | 1/14/1727:1733 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_6GSL_076 | 1/14/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_6GSL_077 | 1/14/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_6GSL_078 | 1/14/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_6GSL_079 | 1/14/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_6GSL_080 | 1/14/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_6GSL_081 | 1/14/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_6GSL_082 | 1/14/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_6GSL_083 | 1/14/2143:2148 | No text annotation Not in a motif group | homologous HL_7RQB_051 NA | |
| HL_6GSL_084 | 1/14/2209:2215 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_98426.1 | |
| HL_6GSL_085 | 1/14/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_6GSL_086 | 1/14/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_6GSL_087 | 1/14/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_6GSL_088 | 1/14/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_6GSL_089 | 1/14/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_6GSL_090 | 1/14/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
| HL_6GSL_091 | 1/14/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_6GSL_093 | 1/14/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_6GSL_094 | 1/14/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_6GSL_095 | 1/14/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_6GSL_096 | 1/14/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_6GSL_097 | 1/14/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_6GSL_098 | 1/14/2745:2759 | No text annotation Not in a motif group | homologous HL_7A0S_065 HL_56677.7 | |
| HL_6GSL_099 | 1/14/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_6GSL_100 | 1/14/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_6GSL_101 | 1/16/38:44 | No text annotation Not in a motif group | geometric HL_7RQB_070 HL_87939.1 | |
| HL_6GSL_102 | 1/16/86:90 | GNRA Not in a motif group | homologous HL_4V9F_072 HL_42097.1 | |
| HL_6GSL_103 | 1/1G/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_6GSL_104 | 1/1G/157:164 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_6GSL_105 | 1/1G/186F:191A | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_10278.1 | |
| HL_6GSL_106 | 1/1G/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_56691.2 | |
| HL_6GSL_107 | 1/1G/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_6GSL_108 | 1/1G/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_6GSL_109 | 1/1G/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_6GSL_110 | 1/1G/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_6GSL_111 | 1/1G/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_6GSL_112 | 1/1G/419:424 | No text annotation Not in a motif group | homologous HL_6CZR_082 HL_03562.2 | |
| HL_6GSL_113 | 1/1G/457:475 | No text annotation Not in a motif group | ||
| HL_6GSL_114 | 1/1G/522:527 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_6GSL_115 | 1/1G/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_6GSL_116 | 1/1G/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_6GSL_117 | 1/1G/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_6GSL_118 | 1/1G/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_6GSL_119 | 1/1G/837:849 | No text annotation Not in a motif group | homologous HL_5J7L_018 HL_34168.2 | |
| HL_6GSL_120 | 1/1G/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_6GSL_121 | 1/1G/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_6GSL_122 | 1/1G/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_6GSL_123 | 1/1G/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_6GSL_125 | 1/1G/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_6GSL_126 | 1/1G/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_6GSL_127 | 1/1G/1132:1142 | No text annotation Not in a motif group | ||
| HL_6GSL_128 | 1/1G/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_6GSL_129 | 1/1G/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_6GSL_130 | 1/1G/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_6GSL_131 | 1/1G/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_6GSL_132 | 1/1G/1449:1454 | No text annotation Not in a motif group | geometric HL_5T16_002 HL_65572.2 | |
| HL_6GSL_133 | 1/1G/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_6GSL_134 | 1/1H/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_6GSL_135 | 1/1H/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_6GSL_136 | 1/1H/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
| HL_6GSL_137 | 1/1H/137A:141A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_6GSL_138 | 1/1H/155:171 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_6GSL_139 | 1/1H/194:201 | No text annotation Not in a motif group | geometric HL_7RQB_006 HL_06192.2 | |
| HL_6GSL_140 | 1/1H/225:230 | No text annotation Not in a motif group | homologous HL_7A0S_007 HL_02862.2 | |
| HL_6GSL_141 | 1/1H/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_6GSL_142 | 1/1H/270J:270P | No text annotation Not in a motif group | geometric HL_4KR9_003 HL_08127.1 | |
| HL_6GSL_143 | 1/1H/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_6GSL_144 | 1/1H/319:323 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_75407.1 | |
| HL_6GSL_145 | 1/1H/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
| HL_6GSL_146 | 1/1H/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_6GSL_147 | 1/1H/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_6GSL_148 | 1/1H/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_6GSL_149 | 1/1H/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_6GSL_150 | 1/1H/544:549 | No text annotation Not in a motif group | ||
| HL_6GSL_151 | 1/1H/566:575 | No text annotation Not in a motif group | homologous HL_7RQB_018 HL_89380.2 | |
| HL_6GSL_152 | 1/1H/611:617 | No text annotation Not in a motif group | homologous HL_7A0S_019 HL_32369.1 | |
| HL_6GSL_153 | 1/1H/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_6GSL_154 | 1/1H/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
| HL_6GSL_155 | 1/1H/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_6GSL_156 | 1/1H/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_6GSL_157 | 1/1H/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
| HL_6GSL_158 | 1/1H/826:831 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_64365.1 | |
| HL_6GSL_160 | 1/1H/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_6GSL_161 | 1/1H/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_6GSL_164 | 1/1H/1170:1179 | No text annotation Not in a motif group | ||
| HL_6GSL_165 | 1/1H/1223:1228 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_6GSL_166 | 1/1H/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_6GSL_167 | 1/1H/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_6GSL_168 | 1/1H/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_6GSL_169 | 1/1H/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_6GSL_170 | 1/1H/1451:1459 | No text annotation Not in a motif group | geometric HL_7RQB_037 HL_32426.1 | |
| HL_6GSL_171 | 1/1H/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_6GSL_173 | 1/1H/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_6GSL_174 | 1/1H/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_6GSL_175 | 1/1H/1630A:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_6GSL_176 | 1/1H/1691:1696 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_03562.2 | |
| HL_6GSL_177 | 1/1H/1727:1733 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_6GSL_178 | 1/1H/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_6GSL_179 | 1/1H/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_6GSL_180 | 1/1H/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_6GSL_181 | 1/1H/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_6GSL_182 | 1/1H/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_6GSL_183 | 1/1H/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_6GSL_184 | 1/1H/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_6GSL_185 | 1/1H/2140:2151 | No text annotation Not in a motif group | ||
| HL_6GSL_186 | 1/1H/2209:2215 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_98426.1 | |
| HL_6GSL_187 | 1/1H/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_6GSL_188 | 1/1H/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_6GSL_189 | 1/1H/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_6GSL_190 | 1/1H/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_6GSL_191 | 1/1H/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_6GSL_192 | 1/1H/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
| HL_6GSL_193 | 1/1H/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_6GSL_194 | 1/1H/2471:2479 | No text annotation Not in a motif group | ||
| HL_6GSL_195 | 1/1H/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_6GSL_196 | 1/1H/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_6GSL_197 | 1/1H/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_6GSL_198 | 1/1H/2658:2663 | No text annotation Not in a motif group | homologous HL_7RQB_064 HL_42097.1 | |
| HL_6GSL_199 | 1/1H/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_6GSL_200 | 1/1H/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_6GSL_201 | 1/1H/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_6GSL_202 | 1/1H/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_6GSL_203 | 1/1J/38:44 | No text annotation Not in a motif group | homologous HL_4V9F_071 HL_87939.1 | |
| HL_6GSL_204 | 1/1J/86:90 | No text annotation Not in a motif group | ||
| HL_6GSL_206 | 1/1K/32:40 | No text annotation Not in a motif group | ||
| HL_6GSL_207 | 1/1K/54:62 | No text annotation Not in a motif group | homologous HL_5E81_207 NA | |
| HL_6GSL_209 | 1/1L/32:40 | No text annotation Not in a motif group | ||
| HL_6GSL_210 | 1/1L/54:62 | No text annotation Not in a motif group | ||
| HL_6GSL_211 | 1/2K/13:23 | No text annotation Not in a motif group | homologous HL_4TUE_033 HL_25462.2 | |
| HL_6GSL_212 | 1/2K/32:40 | No text annotation Not in a motif group | homologous HL_5E81_212 NA | |
| HL_6GSL_213 | 1/2K/54:62 | No text annotation Not in a motif group | homologous HL_5E81_213 NA | |
| HL_6GSL_214 | 1/2L/13:23 | No text annotation Not in a motif group | homologous HL_1QF6_001 NA | |
| HL_6GSL_215 | 1/2L/32:40 | No text annotation Not in a motif group | homologous HL_5E81_212 NA | |
| HL_6GSL_216 | 1/2L/54:62 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA | |
| HL_6GSL_218 | 1/3K/31:41 | No text annotation Not in a motif group | homologous HL_6GSK_218 HL_36684.1 | |
| HL_6GSL_221 | 1/3L/30:42 | No text annotation HL_06285.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6GSL_002 | No text annotation | ||
| HL_6GSL_009 | No text annotation | ||
| HL_6GSL_036 | No text annotation | ||
| HL_6GSL_057 | No text annotation | ||
| HL_6GSL_060 | No text annotation | ||
| HL_6GSL_061 | No text annotation | ||
| HL_6GSL_092 | No text annotation | ||
| HL_6GSL_124 | No text annotation | ||
| HL_6GSL_159 | No text annotation | ||
| HL_6GSL_162 | No text annotation | ||
| HL_6GSL_163 | No text annotation | ||
| HL_6GSL_172 | No text annotation | ||
| HL_6GSL_205 | No text annotation | ||
| HL_6GSL_208 | No text annotation | ||
| HL_6GSL_217 | No text annotation | ||
| HL_6GSL_219 | No text annotation | ||
| HL_6GSL_220 | No text annotation | ||
| HL_6GSL_222 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6GSL_001 | 1/13/29:32, 1/13/552:554 | No text annotation Not in a motif group | geometric IL_7A0S_026 IL_51629.2 | |
| IL_6GSL_002 | 1/13/44:45, 1/13/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_6GSL_003 | 1/13/47:52, 1/13/359:361 | No text annotation Not in a motif group | geometric IL_4LFB_003 IL_11178.1 | |
| IL_6GSL_004 | 1/13/54:56, 1/13/356:357 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_93353.1 | |
| IL_6GSL_005 | 1/13/62:66, 1/13/103:105 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_6GSL_006 | 1/13/67:69, 1/13/99:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_6GSL_007 | 1/13/129:131, 1/13/231:232 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_119 IL_16396.2 | |
| IL_6GSL_008 | 1/13/132:136, 1/13/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_6GSL_009 | 1/13/148:155, 1/13/166:174 | No text annotation Not in a motif group | ||
| IL_6GSL_010 | 1/13/184:186B, 1/13/191E:193 | No text annotation Not in a motif group | ||
| IL_6GSL_011 | 1/13/242:247, 1/13/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_6CZR_123 IL_45067.2 | |
| IL_6GSL_012 | 1/13/249:252, 1/13/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_6GSL_013 | 1/13/292:293, 1/13/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_6GSL_014 | 1/13/367:369, 1/13/392:393 | Single bulged U Not in a motif group | geometric IL_5J7L_017 IL_83039.13 | |
| IL_6GSL_015 | 1/13/371:375, 1/13/389:390 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_6GSL_016 | 1/13/375:376, 1/13/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6GSL_017 | 1/13/409:416, 1/13/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_6GSL_018 | 1/13/446:450, 1/13/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_6GSL_019 | 1/13/504:511, 1/13/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_6GSL_020 | 1/13/515:521, 1/13/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_6GSL_021 | 1/13/569:575, 1/13/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_6GSL_022 | 1/13/580:584, 1/13/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_6GSL_023 | 1/13/594:596, 1/13/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_6GSL_024 | 1/13/597:598, 1/13/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_6GSL_025 | 1/13/605:612, 1/13/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_6GSL_026 | 1/13/654:655, 1/13/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4LFB_027 IL_50694.2 | |
| IL_6GSL_027 | 1/13/657:658, 1/13/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_6GSL_028 | 1/13/662:666, 1/13/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_6GSL_029 | 1/13/673:678, 1/13/712:717 | No text annotation Not in a motif group | geometric IL_4LFB_030 IL_04668.1 | |
| IL_6GSL_030 | 1/13/683:688, 1/13/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_6GSL_031 | 1/13/774:778, 1/13/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_6GSL_032 | 1/13/779:783, 1/13/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_6GSL_033 | 1/13/887:894, 1/13/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_6GSL_034 | 1/13/922:923, 1/13/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_6GSL_035 | 1/13/925:927, 1/13/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_6GSL_036 | 1/13/933:935, 1/13/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_6GSL_037 | 1/13/952:954, 1/13/1226:1229 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4WF9_003 IL_65006.1 | |
| IL_6GSL_038 | 1/13/993:998, 1/13/1043:1045 | No text annotation Not in a motif group | ||
| IL_6GSL_039 | 1/13/1003:1006, 1/13/1023:1037 | No text annotation Not in a motif group | ||
| IL_6GSL_040 | 1/13/1048:1050, 1/13/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_6GSL_041 | 1/13/1052:1056, 1/13/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_6GSL_042 | 1/13/1057:1058, 1/13/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_6GSL_043 | 1/13/1060:1061, 1/13/1195:1197 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.13 | |
| IL_6GSL_044 | 1/13/1061:1063, 1/13/1193:1195 | No text annotation Not in a motif group | homologous IL_4LFB_047 IL_95997.1 | |
| IL_6GSL_045 | 1/13/1124:1132, 1/13/1142:1149 | No text annotation Not in a motif group | ||
| IL_6GSL_046 | 1/13/1247:1253, 1/13/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_6GSL_047 | 1/13/1255:1258, 1/13/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_6GSL_048 | 1/13/1259:1262, 1/13/1273:1276 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.9 | |
| IL_6GSL_049 | 1/13/1303:1308, 1/13/1329:1334 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_6GSL_050 | 1/13/1399:1401, 1/13/1501:1504 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
| IL_6GSL_051 | 1/13/1401:1404, 1/13/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_6GSL_052 | 1/13/1405:1407, 1/13/1494:1496 | No text annotation Not in a motif group | geometric IL_5MWI_004 IL_95997.1 | |
| IL_6GSL_053 | 1/13/1407:1409, 1/13/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_6GSL_054 | 1/13/1412:1414, 1/13/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_6GSL_055 | 1/13/1416:1419, 1/13/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_6GSL_056 | 1/13/1431:1435, 1/13/1466:1469 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.1 | |
| IL_6GSL_057 | 1/13/1435:1437, 1/13/1464:1466 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_95997.1 | |
| IL_6GSL_058 | 1/13/1440:1447, 1/13/1459:1461 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.2 | |
| IL_6GSL_059 | 1/14/24:30, 1/14/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_6GSL_060 | 1/14/36:37, 1/14/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_6GSL_061 | 1/14/43:45, 1/14/433:436 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_18471.2 | |
| IL_6GSL_062 | 1/14/81:85, 1/14/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_6GSL_063 | 1/14/183:184, 1/14/212:214 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_6GSL_064 | 1/14/188:194, 1/14/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_6GSL_065 | 1/14/239:245, 1/14/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_6GSL_066 | 1/14/270J:270K, 1/14/270N:270P | Single bulged U Not in a motif group | homologous IL_7RQB_008 IL_83039.13 | |
| IL_6GSL_067 | 1/14/271:272, 1/14/365:366 | No text annotation Not in a motif group | ||
| IL_6GSL_068 | 1/14/273:273B, 1/14/363D:364 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3KTW_002 IL_82068.2 | |
| IL_6GSL_069 | 1/14/273E:279, 1/14/361:363A | No text annotation Not in a motif group | ||
| IL_6GSL_070 | 1/14/280:284, 1/14/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
| IL_6GSL_071 | 1/14/288:290, 1/14/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_6GSL_072 | 1/14/293:295, 1/14/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_6GSL_073 | 1/14/481:484, 1/14/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
| IL_6GSL_074 | 1/14/564:566, 1/14/575:577 | No text annotation Not in a motif group | geometric IL_7RQB_015 IL_95997.1 | |
| IL_6GSL_075 | 1/14/606:609A, 1/14/618A:622 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
| IL_6GSL_076 | 1/14/672:674, 1/14/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
| IL_6GSL_077 | 1/14/674:678, 1/14/799:806 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_4WF9_021 IL_17470.6 | |
| IL_6GSL_078 | 1/14/697:698, 1/14/763:765 | Single bulged A Not in a motif group | homologous IL_7RQB_019 IL_37497.2 | |
| IL_6GSL_079 | 1/14/702:703, 1/14/728:730 | Single bulged G Not in a motif group | homologous IL_7RQB_020 IL_00225.2 | |
| IL_6GSL_080 | 1/14/703:707, 1/14/724:728 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.8 | |
| IL_6GSL_081 | 1/14/738:741, 1/14/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7A0S_019 IL_05564.2 | |
| IL_6GSL_082 | 1/14/775:777, 1/14/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.6 | |
| IL_6GSL_083 | 1/14/837:838, 1/14/940:942 | Single stack bend Not in a motif group | homologous IL_4WF9_028 IL_92001.1 | |
| IL_6GSL_084 | 1/14/844:846, 1/14/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
| IL_6GSL_085 | 1/14/846:850, 1/14/928:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 IL_94165.1 | |
| IL_6GSL_086 | 1/14/858:862, 1/14/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7RQB_027 IL_38862.1 | |
| IL_6GSL_087 | 1/14/862:863, 1/14/913:915 | Minor groove platform Not in a motif group | homologous IL_7RQB_028 IL_42622.2 | |
| IL_6GSL_088 | 1/14/864:868, 1/14/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_6GSL_089 | 1/14/875:877, 1/14/899:902 | Minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_031 IL_46796.1 | |
| IL_6GSL_091 | 1/14/952:954, 1/14/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_6GSL_092 | 1/14/994:996, 1/14/1159:1160 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_6GSL_093 | 1/14/998:1002, 1/14/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_6GSL_094 | 1/14/1004:1013, 1/14/1149:1151 | No text annotation Not in a motif group | ||
| IL_6GSL_095 | 1/14/1018:1024, 1/14/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_6GSL_096 | 1/14/1024:1030, 1/14/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_6GSL_097 | 1/14/1031:1034, 1/14/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_6GSL_100 | 1/14/1196:1198, 1/14/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.2 | |
| IL_6GSL_101 | 1/14/1202:1206, 1/14/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_6GSL_102 | 1/14/1208:1215, 1/14/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_6GSL_103 | 1/14/1219:1221, 1/14/1229A:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_6GSL_104 | 1/14/1262:1269, 1/14/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_6GSL_105 | 1/14/1310:1313, 1/14/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_6GSL_106 | 1/14/1319:1323, 1/14/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_6GSL_107 | 1/14/1351:1355, 1/14/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_6GSL_108 | 1/14/1357:1361, 1/14/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_6GSL_109 | 1/14/1414:1416, 1/14/1582:1588 | No text annotation Not in a motif group | ||
| IL_6GSL_110 | 1/14/1417:1421, 1/14/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
| IL_6GSL_111 | 1/14/1433:1435, 1/14/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_6GSL_112 | 1/14/1437:1440, 1/14/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_6GSL_113 | 1/14/1448:1449A, 1/14/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
| IL_6GSL_114 | 1/14/1450:1451, 1/14/1459:1461 | Single bulged A Not in a motif group | geometric IL_7RQB_059 IL_37497.2 | |
| IL_6GSL_115 | 1/14/1469:1473, 1/14/1520:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_6GSL_116 | 1/14/1482:1483, 1/14/1506:1512 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_6GSL_117 | 1/14/1489:1491, 1/14/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_6GSL_118 | 1/14/1526:1530, 1/14/1541:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_02656.1 | |
| IL_6GSL_119 | 1/14/1651:1656, 1/14/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_6GSL_120 | 1/14/1663:1665, 1/14/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_6GSL_121 | 1/14/1666:1669, 1/14/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_6GSL_122 | 1/14/1669:1674, 1/14/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_82842.2 | |
| IL_6GSL_123 | 1/14/1686:1691, 1/14/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
| IL_6GSL_124 | 1/14/1770:1771, 1/14/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_6GSL_125 | 1/14/1797:1804, 1/14/1813:1822 | No text annotation Not in a motif group | ||
| IL_6GSL_126 | 1/14/1837:1840, 1/14/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_6GSL_127 | 1/14/1841:1842, 1/14/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_6GSL_128 | 1/14/1846:1849, 1/14/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_6GSL_129 | 1/14/1851:1855, 1/14/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_6GSL_130 | 1/14/1856:1860, 1/14/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_6GSL_131 | 1/14/1933:1934, 1/14/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
| IL_6GSL_132 | 1/14/1934:1945, 1/14/1961:1964 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_6GSL_133 | 1/14/2050:2052, 1/14/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_6GSL_134 | 1/14/2054:2057, 1/14/2611:2615 | No text annotation Not in a motif group | ||
| IL_6GSL_135 | 1/14/2067:2069, 1/14/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_6GSL_136 | 1/14/2070:2071, 1/14/2438:2441 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_6GSL_137 | 1/14/2081:2083, 1/14/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_6GSL_138 | 1/14/2085:2087, 1/14/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_6GSL_139 | 1/14/2106:2110, 1/14/2179:2183 | No text annotation Not in a motif group | ||
| IL_6GSL_141 | 1/14/2120:2127, 1/14/2161:2178 | No text annotation Not in a motif group | ||
| IL_6GSL_142 | 1/14/2127:2136, 1/14/2155:2161 | No text annotation Not in a motif group | ||
| IL_6GSL_143 | 1/14/2297:2299, 1/14/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4WF9_086 IL_38958.7 | |
| IL_6GSL_144 | 1/14/2350:2353, 1/14/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_6GSL_145 | 1/14/2400:2403, 1/14/2414:2416 | No text annotation Not in a motif group | ||
| IL_6GSL_146 | 1/14/2453:2454, 1/14/2498:2500 | Single stack bend Not in a motif group | homologous IL_7RQB_091 IL_76488.2 | |
| IL_6GSL_147 | 1/14/2454:2455, 1/14/2496:2498 | Major groove platform Not in a motif group | geometric IL_7RQB_092 IL_27635.1 | |
| IL_6GSL_148 | 1/14/2457:2459, 1/14/2493:2494 | Major groove platform Not in a motif group | homologous IL_4WF9_091 IL_27635.1 | |
| IL_6GSL_149 | 1/14/2459:2461, 1/14/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_92788.2 | |
| IL_6GSL_150 | 1/14/2466:2470, 1/14/2480:2484 | Triple sheared Not in a motif group | homologous IL_4WF9_093 IL_56467.8 | |
| IL_6GSL_151 | 1/14/2507:2508, 1/14/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_6GSL_152 | 1/14/2510:2512, 1/14/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
| IL_6GSL_153 | 1/14/2512:2513, 1/14/2571:2574 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 IL_71530.2 | |
| IL_6GSL_154 | 1/14/2522:2523, 1/14/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
| IL_6GSL_155 | 1/14/2591:2592, 1/14/2601:2603 | Single bulged A Not in a motif group | homologous IL_5J7L_344 IL_37497.2 | |
| IL_6GSL_156 | 1/14/2636:2640, 1/14/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_6GSL_157 | 1/14/2651:2658, 1/14/2663:2669 | No text annotation Not in a motif group | ||
| IL_6GSL_158 | 1/14/2680:2684, 1/14/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_6GSL_159 | 1/14/2687:2691, 1/14/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_6GSL_160 | 1/14/2695:2696, 1/14/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
| IL_6GSL_161 | 1/14/2737:2742, 1/14/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7A0S_098 IL_49767.5 | |
| IL_6GSL_163 | 1/14/2838:2839, 1/14/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_6GSL_164 | 1/14/2843:2846, 1/14/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_6GSL_165 | 1/14/2847:2852, 1/14/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_6GSL_166 | 1/16/17:18, 1/16/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_6GSL_167 | 1/16/23:28, 1/16/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_6GSL_168 | 1/16/30:31, 1/16/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V9F_103 IL_09061.6 | |
| IL_6GSL_169 | 1/16/34:38, 1/16/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
| IL_6GSL_170 | 1/16/71:79, 1/16/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_6GSL_171 | 1/1G/30:32, 1/1G/552:553 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.2 | |
| IL_6GSL_172 | 1/1G/44:45, 1/1G/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_6GSL_173 | 1/1G/47:52, 1/1G/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_6GSL_174 | 1/1G/54:56, 1/1G/356:357 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_93353.1 | |
| IL_6GSL_175 | 1/1G/63:66, 1/1G/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_6GSL_176 | 1/1G/67:69, 1/1G/99:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_6GSL_177 | 1/1G/129:131, 1/1G/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_6GSL_178 | 1/1G/132:136, 1/1G/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_6GSL_179 | 1/1G/148:153, 1/1G/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_6GSL_180 | 1/1G/185:186B, 1/1G/191E:192 | No text annotation Not in a motif group | ||
| IL_6GSL_181 | 1/1G/242:247, 1/1G/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_6GSL_182 | 1/1G/249:252, 1/1G/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_6GSL_183 | 1/1G/292:293, 1/1G/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_6GSL_184 | 1/1G/367:369, 1/1G/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.13 | |
| IL_6GSL_185 | 1/1G/371:375, 1/1G/389:390 | C-loop Not in a motif group | geometric IL_4LFB_015 IL_75255.1 | |
| IL_6GSL_186 | 1/1G/375:376, 1/1G/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.2 | |
| IL_6GSL_187 | 1/1G/409:416, 1/1G/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_6GSL_188 | 1/1G/446:450, 1/1G/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_6CZR_130 IL_88269.3 | |
| IL_6GSL_189 | 1/1G/450:455, 1/1G/477:483 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
| IL_6GSL_190 | 1/1G/504:511, 1/1G/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_6GSL_191 | 1/1G/515:521, 1/1G/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_6GSL_192 | 1/1G/569:575, 1/1G/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_6GSL_193 | 1/1G/580:584, 1/1G/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_6GSL_194 | 1/1G/594:596, 1/1G/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_6GSL_195 | 1/1G/597:598, 1/1G/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_6GSL_196 | 1/1G/605:612, 1/1G/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_6GSL_197 | 1/1G/654:655, 1/1G/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_031 IL_50694.2 | |
| IL_6GSL_198 | 1/1G/657:658, 1/1G/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_6GSL_199 | 1/1G/662:666, 1/1G/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_6GSL_200 | 1/1G/673:678, 1/1G/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_6GSL_201 | 1/1G/683:688, 1/1G/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_6GSL_202 | 1/1G/774:778, 1/1G/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_6GSL_203 | 1/1G/779:783, 1/1G/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_6GSL_204 | 1/1G/887:894, 1/1G/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_6GSL_205 | 1/1G/922:924, 1/1G/1392:1395 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_82068.2 | |
| IL_6GSL_206 | 1/1G/925:927, 1/1G/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_6GSL_207 | 1/1G/933:935, 1/1G/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_6GSL_208 | 1/1G/953:954, 1/1G/1226:1228 | No text annotation Not in a motif group | ||
| IL_6GSL_209 | 1/1G/993:998A, 1/1G/1042:1045 | No text annotation Not in a motif group | ||
| IL_6GSL_210 | 1/1G/1048:1050, 1/1G/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_6GSL_211 | 1/1G/1052:1057, 1/1G/1203:1206 | No text annotation Not in a motif group | ||
| IL_6GSL_212 | 1/1G/1057:1058, 1/1G/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_6GSL_213 | 1/1G/1060:1061, 1/1G/1195:1197 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.13 | |
| IL_6GSL_214 | 1/1G/1061:1063, 1/1G/1193:1195 | No text annotation Not in a motif group | geometric IL_4JGN_004 IL_95997.1 | |
| IL_6GSL_215 | 1/1G/1124:1132, 1/1G/1142:1149 | No text annotation Not in a motif group | ||
| IL_6GSL_216 | 1/1G/1247:1253, 1/1G/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_6GSL_217 | 1/1G/1255:1258, 1/1G/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_6GSL_218 | 1/1G/1259:1262, 1/1G/1273:1276 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.9 | |
| IL_6GSL_219 | 1/1G/1303:1308, 1/1G/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_6GSL_220 | 1/1G/1399:1401, 1/1G/1501:1504 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_6GSL_221 | 1/1G/1401:1404, 1/1G/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_6GSL_222 | 1/1G/1405:1407, 1/1G/1494:1496 | No text annotation Not in a motif group | geometric IL_4V9F_023 IL_95997.1 | |
| IL_6GSL_223 | 1/1G/1407:1409, 1/1G/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_6GSL_224 | 1/1G/1412:1414, 1/1G/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_6GSL_225 | 1/1G/1416:1419, 1/1G/1481:1484 | Double sheared Not in a motif group | homologous IL_6CZR_169 IL_09705.9 | |
| IL_6GSL_226 | 1/1G/1431:1435, 1/1G/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.1 | |
| IL_6GSL_227 | 1/1G/1435:1437, 1/1G/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_6GSL_228 | 1/1G/1440:1447, 1/1G/1459:1461 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.2 | |
| IL_6GSL_229 | 1/1H/24:30, 1/1H/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7RQB_001 IL_66414.6 | |
| IL_6GSL_230 | 1/1H/36:37, 1/1H/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_6GSL_231 | 1/1H/41:45, 1/1H/433:438 | No text annotation Not in a motif group | ||
| IL_6GSL_232 | 1/1H/81:85, 1/1H/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_6GSL_233 | 1/1H/183:184, 1/1H/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_6GSL_234 | 1/1H/188:194, 1/1H/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_6GSL_235 | 1/1H/239:245, 1/1H/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_6GSL_236 | 1/1H/271:272, 1/1H/365:366 | No text annotation Not in a motif group | ||
| IL_6GSL_237 | 1/1H/273:273A, 1/1H/363E:364 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_27635.1 | |
| IL_6GSL_239 | 1/1H/280:284, 1/1H/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
| IL_6GSL_240 | 1/1H/288:290, 1/1H/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_6GSL_241 | 1/1H/293:295, 1/1H/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_6GSL_242 | 1/1H/481:484, 1/1H/496:509 | No text annotation Not in a motif group | geometric IL_7RQB_014 IL_60992.6 | |
| IL_6GSL_243 | 1/1H/564:566, 1/1H/575:577 | No text annotation Not in a motif group | geometric IL_7RQB_015 IL_95997.1 | |
| IL_6GSL_244 | 1/1H/606:609A, 1/1H/618A:622 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
| IL_6GSL_245 | 1/1H/672:674, 1/1H/806:808 | No text annotation Not in a motif group | homologous IL_5J7L_259 IL_95997.1 | |
| IL_6GSL_246 | 1/1H/674:678, 1/1H/799:806 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_4WF9_021 IL_17470.6 | |
| IL_6GSL_247 | 1/1H/697:698, 1/1H/763:765 | Single bulged A Not in a motif group | geometric IL_7A0S_016 IL_37497.2 | |
| IL_6GSL_248 | 1/1H/702:703, 1/1H/728:730 | Single bulged G Not in a motif group | homologous IL_7RQB_020 IL_00225.2 | |
| IL_6GSL_249 | 1/1H/703:707, 1/1H/724:728 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.8 | |
| IL_6GSL_250 | 1/1H/738:741, 1/1H/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_6GSL_251 | 1/1H/775:777, 1/1H/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.6 | |
| IL_6GSL_252 | 1/1H/837:838, 1/1H/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_6GSL_253 | 1/1H/844:846, 1/1H/931:934 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 IL_52767.2 | |
| IL_6GSL_254 | 1/1H/846:850, 1/1H/928:931 | No text annotation Not in a motif group | geometric IL_7RQB_026 IL_94165.1 | |
| IL_6GSL_255 | 1/1H/857:862, 1/1H/915:920 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_6GSL_256 | 1/1H/862:863, 1/1H/913:915 | Minor groove platform Not in a motif group | homologous IL_4WF9_032 IL_42622.2 | |
| IL_6GSL_257 | 1/1H/864:868, 1/1H/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_6GSL_258 | 1/1H/875:879, 1/1H/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_6GSL_260 | 1/1H/952:954, 1/1H/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_6GSL_261 | 1/1H/994:996, 1/1H/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_6GSL_262 | 1/1H/998:1002, 1/1H/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_6GSL_263 | 1/1H/1004:1011, 1/1H/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.7 | |
| IL_6GSL_264 | 1/1H/1011:1013, 1/1H/1149:1150 | Single bulged U Not in a motif group | homologous IL_7RQB_038 IL_83039.13 | |
| IL_6GSL_265 | 1/1H/1018:1024, 1/1H/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_6GSL_267 | 1/1H/1031:1034, 1/1H/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_6GSL_268 | 1/1H/1041:1043, 1/1H/1112:1114 | No text annotation Not in a motif group | geometric IL_6OL3_002 IL_95997.1 | |
| IL_6GSL_269 | 1/1H/1043:1051, 1/1H/1108:1112 | Kink-turn Not in a motif group | homologous IL_7RQB_042 IL_90538.4 | |
| IL_6GSL_271 | 1/1H/1196:1198, 1/1H/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.2 | |
| IL_6GSL_272 | 1/1H/1202:1206, 1/1H/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_6GSL_273 | 1/1H/1208:1215, 1/1H/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_6GSL_274 | 1/1H/1219:1221, 1/1H/1229A:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_6GSL_275 | 1/1H/1262:1269, 1/1H/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_6GSL_276 | 1/1H/1310:1313, 1/1H/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_6GSL_277 | 1/1H/1319:1323, 1/1H/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_6GSL_278 | 1/1H/1351:1355, 1/1H/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_6GSL_279 | 1/1H/1357:1361, 1/1H/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_6GSL_280 | 1/1H/1415:1416, 1/1H/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_6GSL_281 | 1/1H/1417:1421, 1/1H/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
| IL_6GSL_282 | 1/1H/1433:1435, 1/1H/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_6GSL_283 | 1/1H/1437:1440, 1/1H/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_6GSL_284 | 1/1H/1448:1449A, 1/1H/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
| IL_6GSL_285 | 1/1H/1450:1451, 1/1H/1459:1461 | Single bulged A Not in a motif group | homologous IL_7RQB_059 IL_37497.2 | |
| IL_6GSL_286 | 1/1H/1469:1473, 1/1H/1520:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_6GSL_287 | 1/1H/1482:1483, 1/1H/1506:1512 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_6GSL_288 | 1/1H/1489:1491, 1/1H/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_6GSL_289 | 1/1H/1526:1530, 1/1H/1541:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_02656.1 | |
| IL_6GSL_290 | 1/1H/1651:1656, 1/1H/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_6GSL_291 | 1/1H/1663:1665, 1/1H/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_6GSL_292 | 1/1H/1666:1669, 1/1H/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_6GSL_293 | 1/1H/1669:1674, 1/1H/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_82842.2 | |
| IL_6GSL_294 | 1/1H/1686:1691, 1/1H/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_6GSL_295 | 1/1H/1770:1771, 1/1H/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_6GSL_296 | 1/1H/1798:1804, 1/1H/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_6GSL_297 | 1/1H/1837:1840, 1/1H/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_6GSL_298 | 1/1H/1841:1842, 1/1H/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_6GSL_299 | 1/1H/1846:1849, 1/1H/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_6GSL_300 | 1/1H/1851:1855, 1/1H/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_6GSL_301 | 1/1H/1856:1860, 1/1H/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_6GSL_302 | 1/1H/1933:1934, 1/1H/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 IL_59677.2 | |
| IL_6GSL_303 | 1/1H/1934:1945, 1/1H/1961:1964 | No text annotation Not in a motif group | geometric IL_7A0S_072 IL_81589.2 | |
| IL_6GSL_304 | 1/1H/2050:2052, 1/1H/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_6GSL_305 | 1/1H/2054:2057, 1/1H/2611:2615 | No text annotation Not in a motif group | ||
| IL_6GSL_306 | 1/1H/2067:2069, 1/1H/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_6GSL_307 | 1/1H/2070:2071, 1/1H/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_6GSL_308 | 1/1H/2081:2083, 1/1H/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_6GSL_309 | 1/1H/2085:2087, 1/1H/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_6GSL_310 | 1/1H/2108:2110, 1/1H/2179:2181 | No text annotation Not in a motif group | geometric IL_4PCJ_001 IL_95997.1 | |
| IL_6GSL_311 | 1/1H/2110:2120, 1/1H/2178:2179 | No text annotation Not in a motif group | ||
| IL_6GSL_312 | 1/1H/2297:2299, 1/1H/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_088 IL_38958.7 | |
| IL_6GSL_313 | 1/1H/2350:2353, 1/1H/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_6GSL_314 | 1/1H/2401:2403, 1/1H/2414:2415 | No text annotation Not in a motif group | ||
| IL_6GSL_315 | 1/1H/2453:2454, 1/1H/2498:2500 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.2 | |
| IL_6GSL_316 | 1/1H/2454:2455, 1/1H/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_6GSL_317 | 1/1H/2456:2459, 1/1H/2493:2495 | Major groove platform with extra pair Not in a motif group | homologous IL_7RQB_093 IL_63450.2 | |
| IL_6GSL_318 | 1/1H/2459:2461, 1/1H/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_92788.2 | |
| IL_6GSL_319 | 1/1H/2466:2470, 1/1H/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_6GSL_320 | 1/1H/2507:2508, 1/1H/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_6GSL_321 | 1/1H/2510:2512, 1/1H/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
| IL_6GSL_322 | 1/1H/2512:2513, 1/1H/2571:2574 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 IL_71530.2 | |
| IL_6GSL_323 | 1/1H/2522:2523, 1/1H/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
| IL_6GSL_324 | 1/1H/2591:2592, 1/1H/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_6GSL_325 | 1/1H/2636:2640, 1/1H/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_6GSL_326 | 1/1H/2652:2658, 1/1H/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 IL_16458.1 | |
| IL_6GSL_327 | 1/1H/2680:2684, 1/1H/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_6GSL_328 | 1/1H/2687:2691, 1/1H/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_6GSL_329 | 1/1H/2695:2696, 1/1H/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7A0S_097 IL_71530.2 | |
| IL_6GSL_330 | 1/1H/2737:2742, 1/1H/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_6GSL_332 | 1/1H/2838:2839, 1/1H/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_6GSL_333 | 1/1H/2843:2846, 1/1H/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_6GSL_334 | 1/1H/2847:2852, 1/1H/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_6GSL_335 | 1/1J/0:2, 1/1J/118:119 | No text annotation Not in a motif group | ||
| IL_6GSL_336 | 1/1J/17:19, 1/1J/64:67 | No text annotation Not in a motif group | ||
| IL_6GSL_337 | 1/1J/23:28, 1/1J/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_6GSL_338 | 1/1J/30:31, 1/1J/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_6GSL_339 | 1/1J/34:38, 1/1J/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_6GSL_340 | 1/1J/71:79, 1/1J/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_6GSL_341 | 1/1K/2:4, 1/1K/70:72 | No text annotation Not in a motif group | homologous IL_4WSM_370 NA | |
| IL_6GSL_342 | 1/3K/3:4, 1/3K/69:71 | Single stack bend Not in a motif group | geometric IL_4WF9_007 IL_76488.2 | |
| IL_6GSL_343 | 1/3K/4:7, 1/3K/67:69 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6GSL_090 | No text annotation | ||
| IL_6GSL_098 | No text annotation | ||
| IL_6GSL_099 | No text annotation | ||
| IL_6GSL_140 | Multiple bulged bases | ||
| IL_6GSL_162 | No text annotation | ||
| IL_6GSL_238 | No text annotation | ||
| IL_6GSL_259 | No text annotation | ||
| IL_6GSL_266 | No text annotation | ||
| IL_6GSL_270 | No text annotation | ||
| IL_6GSL_331 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6GSL_001 | 1/13/46:47, 1/13/361:367, 1/13/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_6GSL_002 | 1/13/586:588, 1/13/651:654, 1/13/754:755 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA | |
| J3_6GSL_003 | 1/13/672:673, 1/13/717:725, 1/13/732:734 | No text annotation Not in a motif group | homologous J3_6CZR_017 NA | |
| J3_6GSL_004 | 1/13/826:829, 1/13/857:861, 1/13/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_6GSL_005 | 1/13/943:946, 1/13/1235:1237, 1/13/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_6GSL_006 | 1/13/955:962, 1/13/973:984, 1/13/1221:1225 | No text annotation Not in a motif group | ||
| J3_6GSL_007 | 1/13/990:993, 1/13/1045:1047, 1/13/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_6GSL_008 | 1/13/1063:1068, 1/13/1107:1113, 1/13/1187:1193 | No text annotation Not in a motif group | ||
| J3_6GSL_009 | 1/13/1073:1074, 1/13/1083:1087, 1/13/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_6GSL_010 | 1/13/1116:1118, 1/13/1155:1161, 1/13/1175:1184 | No text annotation Not in a motif group | ||
| J3_6GSL_011 | 1/13/1237:1241, 1/13/1296:1303, 1/13/1334:1337 | No text annotation Not in a motif group | ||
| J3_6GSL_012 | 1/14/30:31, 1/14/474:481, 1/14/509:510 | No text annotation Not in a motif group | ||
| J3_6GSL_013 | 1/14/56:57, 1/14/70:76, 1/14/110:114 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
| J3_6GSL_014 | 1/14/269:270C, 1/14/270W:271, 1/14/366:370 | No text annotation Not in a motif group | ||
| J3_6GSL_015 | 1/14/683:689, 1/14/773:775, 1/14/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_6GSL_016 | 1/14/698:700, 1/14/732:736, 1/14/760:763 | No text annotation Not in a motif group | ||
| J3_6GSL_018 | 1/14/1298:1303, 1/14/1625:1627, 1/14/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_6GSL_019 | 1/14/1306:1309, 1/14/1605:1611, 1/14/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_6GSL_020 | 1/14/1344:1350, 1/14/1381:1385, 1/14/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_6GSL_021 | 1/14/2091:2093, 1/14/2196:2205, 1/14/2219:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_6GSL_022 | 1/14/2295:2297, 1/14/2321:2323, 1/14/2332:2337 | No text annotation Not in a motif group | ||
| J3_6GSL_023 | 1/14/2517:2520, 1/14/2545:2547, 1/14/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_6GSL_024 | 1/14/2814:2815, 1/14/2831:2836, 1/14/2882:2886 | No text annotation Not in a motif group | ||
| J3_6GSL_025 | 1/16/11:16, 1/16/68:69, 1/16/107:109 | No text annotation Not in a motif group | homologous J3_7RQB_015 NA | |
| J3_6GSL_026 | 1/1G/46:47, 1/1G/361:367, 1/1G/393:395 | No text annotation Not in a motif group | ||
| J3_6GSL_027 | 1/1G/586:588, 1/1G/651:654, 1/1G/754:755 | No text annotation Not in a motif group | ||
| J3_6GSL_028 | 1/1G/672:673, 1/1G/717:725, 1/1G/732:734 | No text annotation Not in a motif group | ||
| J3_6GSL_029 | 1/1G/826:829, 1/1G/857:861, 1/1G/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_6GSL_030 | 1/1G/936:939, 1/1G/1344:1350, 1/1G/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_6GSL_031 | 1/1G/943:946, 1/1G/1235:1237, 1/1G/1337:1340 | No text annotation Not in a motif group | ||
| J3_6GSL_032 | 1/1G/954:962, 1/1G/973:984, 1/1G/1221:1226 | No text annotation Not in a motif group | ||
| J3_6GSL_033 | 1/1G/990:993, 1/1G/1045:1047, 1/1G/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_6GSL_034 | 1/1G/1003:1007, 1/1G/1022:1028A, 1/1G/1032B:1037 | No text annotation Not in a motif group | ||
| J3_6GSL_035 | 1/1G/1063:1068, 1/1G/1107:1113, 1/1G/1187:1193 | No text annotation Not in a motif group | ||
| J3_6GSL_036 | 1/1G/1073:1074, 1/1G/1083:1087, 1/1G/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_6GSL_037 | 1/1G/1116:1118, 1/1G/1155:1161, 1/1G/1175:1184 | No text annotation Not in a motif group | ||
| J3_6GSL_038 | 1/1G/1237:1241, 1/1G/1296:1303, 1/1G/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA | |
| J3_6GSL_039 | 1/1H/30:31, 1/1H/474:481, 1/1H/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_6GSL_040 | 1/1H/56:57, 1/1H/70:76, 1/1H/110:114 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
| J3_6GSL_041 | 1/1H/269:270C, 1/1H/270W:271, 1/1H/366:370 | No text annotation Not in a motif group | ||
| J3_6GSL_042 | 1/1H/683:689, 1/1H/773:775, 1/1H/791:794 | No text annotation Not in a motif group | homologous J3_7A0S_004 NA | |
| J3_6GSL_043 | 1/1H/698:700, 1/1H/732:736, 1/1H/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_6GSL_045 | 1/1H/1298:1303, 1/1H/1625:1627, 1/1H/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_6GSL_046 | 1/1H/1306:1309, 1/1H/1605:1611, 1/1H/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_6GSL_047 | 1/1H/1344:1350, 1/1H/1381:1385, 1/1H/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_6GSL_048 | 1/1H/2091:2093, 1/1H/2196:2205, 1/1H/2219:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_6GSL_049 | 1/1H/2295:2297, 1/1H/2321:2323, 1/1H/2332:2337 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
| J3_6GSL_050 | 1/1H/2517:2520, 1/1H/2545:2547, 1/1H/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_6GSL_051 | 1/1H/2814:2815, 1/1H/2831:2836, 1/1H/2882:2886 | No text annotation Not in a motif group | ||
| J3_6GSL_052 | 1/1J/11:16, 1/1J/68:69, 1/1J/107:109 | No text annotation Not in a motif group | homologous J3_7RQB_015 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6GSL_017 | No text annotation | ||
| J3_6GSL_044 | No text annotation |
Coloring options: