6Z6K Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6Z6K_001 | 1/C1/38:45 | No text annotation Not in a motif group | homologous HL_8C3A_001 HL_06192.2 | |
| HL_6Z6K_002 | 1/C1/69:74 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_6Z6K_003 | 1/C1/90:96 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_6Z6K_004 | 1/C1/132:136 | No text annotation Not in a motif group | homologous HL_8C3A_004 HL_98426.1 | |
| HL_6Z6K_005 | 1/C1/194:201 | T-loop with 1 bulged base Not in a motif group | homologous HL_5TBW_005 HL_89380.2 | |
| HL_6Z6K_006 | 1/C1/208:212 | No text annotation Not in a motif group | homologous HL_8C3A_006 HL_98984.2 | |
| HL_6Z6K_007 | 1/C1/216:224 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.8 | |
| HL_6Z6K_008 | 1/C1/278:287 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
| HL_6Z6K_009 | 1/C1/303:312 | No text annotation Not in a motif group | homologous HL_8C3A_009 HL_12078.2 | |
| HL_6Z6K_010 | 1/C1/357:362 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.1 | |
| HL_6Z6K_011 | 1/C1/382:387 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_42097.1 | |
| HL_6Z6K_012 | 1/C1/543:548 | No text annotation Not in a motif group | homologous HL_5TBW_012 HL_86373.2 | |
| HL_6Z6K_013 | 1/C1/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_6Z6K_014 | 1/C1/640:649 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_89380.2 | |
| HL_6Z6K_015 | 1/C1/686:694 | No text annotation Not in a motif group | homologous HL_8C3A_015 HL_03345.1 | |
| HL_6Z6K_016 | 1/C1/707:712 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_42097.1 | |
| HL_6Z6K_017 | 1/C1/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_6Z6K_018 | 1/C1/763:768 | No text annotation Not in a motif group | homologous HL_5TBW_018 HL_34168.2 | |
| HL_6Z6K_019 | 1/C1/844:849 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_42097.1 | |
| HL_6Z6K_020 | 1/C1/876:885 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.6 | |
| HL_6Z6K_021 | 1/C1/910:918 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_6Z6K_022 | 1/C1/958:963 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_6Z6K_023 | 1/C1/1023:1029 | No text annotation Not in a motif group | ||
| HL_6Z6K_024 | 1/C1/1076:1083 | No text annotation Not in a motif group | homologous HL_8C3A_024 HL_71554.2 | |
| HL_6Z6K_025 | 1/C1/1126:1132 | No text annotation Not in a motif group | homologous HL_8C3A_025 HL_42097.1 | |
| HL_6Z6K_026 | 1/C1/1148:1155 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.2 | |
| HL_6Z6K_027 | 1/C1/1239:1249 | No text annotation Not in a motif group | homologous HL_8C3A_027 HL_07145.1 | |
| HL_6Z6K_028 | 1/C1/1267:1274 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_6Z6K_030 | 1/C1/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_6Z6K_031 | 1/C1/1462:1470 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_89380.2 | |
| HL_6Z6K_032 | 1/C1/1506:1512 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_46680.1 | |
| HL_6Z6K_033 | 1/C1/1544:1549 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_76539.2 | |
| HL_6Z6K_035 | 1/C1/1599:1608 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.2 | |
| HL_6Z6K_036 | 1/C1/1634:1639 | No text annotation Not in a motif group | homologous HL_8C3A_036 HL_42097.1 | |
| HL_6Z6K_037 | 1/C1/1680:1688 | No text annotation Not in a motif group | homologous HL_5TBW_037 HL_60812.1 | |
| HL_6Z6K_038 | 1/C1/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_86373.2 | |
| HL_6Z6K_039 | 1/C1/1760:1765 | Other HL Not in a motif group | homologous HL_5TBW_039 HL_56691.2 | |
| HL_6Z6K_040 | 1/C1/1792:1796 | No text annotation Not in a motif group | homologous HL_8C3A_040 HL_49678.1 | |
| HL_6Z6K_041 | 1/C1/1844:1851 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_64430.2 | |
| HL_6Z6K_042 | 1/C1/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.1 | |
| HL_6Z6K_043 | 1/C1/1923:1928 | UNCG Not in a motif group | geometric HL_5J7L_175 HL_03562.2 | |
| HL_6Z6K_045 | 1/C1/2110:2114 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_20062.1 | |
| HL_6Z6K_046 | 1/C1/2135:2145 | No text annotation Not in a motif group | homologous HL_8C3A_046 HL_43613.5 | |
| HL_6Z6K_047 | 1/C1/2164:2170 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.1 | |
| HL_6Z6K_048 | 1/C1/2220:2225 | Other HL Not in a motif group | homologous HL_5TBW_048 HL_42097.1 | |
| HL_6Z6K_049 | 1/C1/2253:2263 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_71924.2 | |
| HL_6Z6K_050 | 1/C1/2292:2300 | No text annotation Not in a motif group | homologous HL_8C3A_050 HL_51824.1 | |
| HL_6Z6K_051 | 1/C1/2369:2378 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.6 | |
| HL_6Z6K_053 | 1/C1/2534:2545 | No text annotation Not in a motif group | ||
| HL_6Z6K_054 | 1/C1/2568:2573 | No text annotation Not in a motif group | geometric HL_5TBW_071 HL_53837.1 | |
| HL_6Z6K_055 | 1/C1/2616:2624 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.2 | |
| HL_6Z6K_056 | 1/C1/2633:2645 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.6 | |
| HL_6Z6K_057 | 1/C1/2673:2681 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_6Z6K_058 | 1/C1/2693:2700 | No text annotation Not in a motif group | homologous HL_8C3A_058 HL_12078.2 | |
| HL_6Z6K_059 | 1/C1/2724:2732 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_6Z6K_060 | 1/C1/2744:2749 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_42097.1 | |
| HL_6Z6K_061 | 1/C1/2776:2784 | No text annotation Not in a motif group | homologous HL_8C3A_061 HL_96598.1 | |
| HL_6Z6K_062 | 1/C1/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_6Z6K_063 | 1/C1/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_88526.2 | |
| HL_6Z6K_064 | 1/C1/2920:2926 | No text annotation Not in a motif group | geometric HL_5TBW_063 HL_43656.2 | |
| HL_6Z6K_065 | 1/C1/2963:2968 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_42097.1 | |
| HL_6Z6K_066 | 1/C1/3025:3030 | GNRA Not in a motif group | geometric HL_2R8S_001 HL_42097.1 | |
| HL_6Z6K_067 | 1/C1/3068:3073 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_46680.1 | |
| HL_6Z6K_068 | 1/C1/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_6Z6K_069 | 1/C1/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_98426.1 | |
| HL_6Z6K_070 | 1/C1/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_6Z6K_071 | 1/C1/3303:3311 | No text annotation Not in a motif group | homologous HL_8C3A_071 HL_27930.1 | |
| HL_6Z6K_072 | 1/C1/3350:3353 | No text annotation Not in a motif group | homologous HL_8C3A_072 HL_53837.1 | |
| HL_6Z6K_073 | 1/C2/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_6Z6K_075 | 1/C2/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_6Z6K_076 | 1/C2/190:195 | No text annotation Not in a motif group | homologous HL_4V88_189 HL_77805.2 | |
| HL_6Z6K_077 | 1/C2/231:234 | No text annotation Not in a motif group | ||
| HL_6Z6K_078 | 1/C2/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_6Z6K_079 | 1/C2/276:279 | No text annotation Not in a motif group | geometric HL_4WF9_037 HL_94803.1 | |
| HL_6Z6K_080 | 1/C2/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_6Z6K_081 | 1/C2/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_6Z6K_082 | 1/C2/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6Z6K_083 | 1/C2/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_6Z6K_084 | 1/C2/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_6Z6K_086 | 1/C2/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_6Z6K_087 | 1/C2/569:574 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_6Z6K_089 | 1/C2/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_6Z6K_090 | 1/C2/777:783 | No text annotation Not in a motif group | homologous HL_4V88_204 HL_97896.2 | |
| HL_6Z6K_091 | 1/C2/829:843 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_6Z6K_092 | 1/C2/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_6Z6K_093 | 1/C2/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6Z6K_094 | 1/C2/997:1007 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_6Z6K_095 | 1/C2/1055:1064 | No text annotation Not in a motif group | homologous HL_4V88_209 HL_32255.1 | |
| HL_6Z6K_096 | 1/C2/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_6Z6K_097 | 1/C2/1121:1126 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_6Z6K_098 | 1/C2/1188:1197 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_6Z6K_099 | 1/C2/1238:1247 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_6Z6K_100 | 1/C2/1296:1301 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_6Z6K_101 | 1/C2/1309:1316 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_6Z6K_102 | 1/C2/1359:1364 | No text annotation Not in a motif group | homologous HL_4V88_216 HL_10278.1 | |
| HL_6Z6K_103 | 1/C2/1396:1402 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.1 | |
| HL_6Z6K_104 | 1/C2/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_6Z6K_105 | 1/C2/1550:1561 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_6Z6K_106 | 1/C2/1594:1602 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_6Z6K_108 | 1/C2/1778:1783 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 | |
| HL_6Z6K_109 | 1/C3/69:89 | No text annotation Not in a motif group | ||
| HL_6Z6K_110 | 1/C3/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_6Z6K_111 | 1/C3/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 | |
| HL_6Z6K_112 | 1/C4/36:41 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6Z6K_113 | 1/C4/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6Z6K_029 | No text annotation | ||
| HL_6Z6K_034 | No text annotation | ||
| HL_6Z6K_044 | No text annotation | ||
| HL_6Z6K_052 | No text annotation | ||
| HL_6Z6K_074 | No text annotation | ||
| HL_6Z6K_085 | No text annotation | ||
| HL_6Z6K_088 | No text annotation | ||
| HL_6Z6K_107 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6Z6K_001 | 1/C1/3:4, 1/C3/155:156 | No text annotation Not in a motif group | ||
| IL_6Z6K_002 | 1/C1/7:8, 1/C3/150:152 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_6Z6K_003 | 1/C1/13:15, 1/C3/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_6Z6K_004 | 1/C1/27:28, 1/C1/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_6Z6K_005 | 1/C1/31:38, 1/C1/45:53 | tSH-tHW-tHH-tHS Not in a motif group | geometric IL_5TBW_005 IL_35728.2 | |
| IL_6Z6K_006 | 1/C1/82:89, 1/C1/97:103 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_6Z6K_007 | 1/C1/123:124, 1/C1/144:149 | No text annotation Not in a motif group | homologous IL_8C3A_007 IL_19724.2 | |
| IL_6Z6K_008 | 1/C1/125:127, 1/C1/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_6Z6K_009 | 1/C1/163:165, 1/C1/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.2 | |
| IL_6Z6K_010 | 1/C1/169:170, 1/C1/248:253 | No text annotation Not in a motif group | homologous IL_5TBW_010 IL_74684.1 | |
| IL_6Z6K_011 | 1/C1/177:178, 1/C1/238:241 | Major groove platform Not in a motif group | geometric IL_7A0S_073 IL_27635.1 | |
| IL_6Z6K_012 | 1/C1/189:191, 1/C1/204:205 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_6Z6K_013 | 1/C1/337:339, 1/C3/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.2 | |
| IL_6Z6K_014 | 1/C1/376:379, 1/C1/390:403 | No text annotation Not in a motif group | homologous IL_8C3A_015 IL_60992.6 | |
| IL_6Z6K_015 | 1/C1/404:410, 1/C3/13:19 | No text annotation Not in a motif group | homologous IL_8C3A_016 IL_66414.6 | |
| IL_6Z6K_016 | 1/C1/429:431, 1/C1/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_6Z6K_018 | 1/C1/512:513, 1/C1/577:579 | No text annotation Not in a motif group | homologous IL_8C3A_020 IL_37497.2 | |
| IL_6Z6K_019 | 1/C1/517:525, 1/C1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_6Z6K_020 | 1/C1/531:538, 1/C1/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_6Z6K_021 | 1/C1/668:670, 1/C1/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_95997.1 | |
| IL_6Z6K_022 | 1/C1/680:684, 1/C1/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_6Z6K_023 | 1/C1/725:728, 1/C1/741:745 | UAA/GAN Not in a motif group | homologous IL_5TBW_023 IL_07235.1 | |
| IL_6Z6K_024 | 1/C1/752:753, 1/C1/779:781 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.2 | |
| IL_6Z6K_025 | 1/C1/755:756, 1/C1/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.13 | |
| IL_6Z6K_026 | 1/C1/758:763, 1/C1/768:773 | No text annotation Not in a motif group | geometric IL_5TBW_026 IL_19954.2 | |
| IL_6Z6K_027 | 1/C1/803:805, 1/C1/938:940 | No text annotation Not in a motif group | homologous IL_8C3A_029 IL_95997.1 | |
| IL_6Z6K_028 | 1/C1/805:809, 1/C1/931:938 | No text annotation Not in a motif group | homologous IL_8C3A_030 IL_17470.6 | |
| IL_6Z6K_029 | 1/C1/828:829, 1/C1/895:897 | Single bulged A Not in a motif group | geometric IL_4V9F_025 IL_37497.2 | |
| IL_6Z6K_030 | 1/C1/833:834, 1/C1/859:861 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.2 | |
| IL_6Z6K_031 | 1/C1/834:838, 1/C1/855:859 | No text annotation Not in a motif group | homologous IL_8C3A_033 IL_56467.8 | |
| IL_6Z6K_032 | 1/C1/869:872, 1/C1/888:890 | Major groove platform with extra cWW Not in a motif group | homologous IL_5TBW_031 IL_05564.2 | |
| IL_6Z6K_033 | 1/C1/873:875, 1/C1/886:887 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.13 | |
| IL_6Z6K_034 | 1/C1/907:909, 1/C1/919:923 | No text annotation Not in a motif group | homologous IL_8C3A_036 IL_90991.6 | |
| IL_6Z6K_035 | 1/C1/954:956, 1/C1/965:967 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
| IL_6Z6K_036 | 1/C1/968:970, 1/C1/1111:1114 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_6Z6K_037 | 1/C1/977:981, 1/C1/1102:1104 | No text annotation Not in a motif group | ||
| IL_6Z6K_038 | 1/C1/983:985, 1/C1/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_6Z6K_039 | 1/C1/991:997, 1/C1/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5TBW_038 IL_93830.3 | |
| IL_6Z6K_040 | 1/C1/997:998, 1/C1/1050:1052 | Minor groove platform Not in a motif group | geometric IL_6DLR_003 IL_42622.2 | |
| IL_6Z6K_041 | 1/C1/999:1004, 1/C1/1046:1049 | No text annotation Not in a motif group | homologous IL_8C3A_043 IL_02509.1 | |
| IL_6Z6K_042 | 1/C1/1006:1009, 1/C1/1041:1044 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_041 IL_30621.2 | |
| IL_6Z6K_043 | 1/C1/1009:1011, 1/C1/1039:1041 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_6Z6K_044 | 1/C1/1014:1018, 1/C1/1034:1036 | Decoding loop related Not in a motif group | geometric IL_2O3X_003 IL_82842.2 | |
| IL_6Z6K_045 | 1/C1/1069:1071, 1/C1/1087:1089 | No text annotation Not in a motif group | homologous IL_8C3A_047 IL_95997.1 | |
| IL_6Z6K_046 | 1/C1/1074:1076, 1/C1/1083:1084 | Single bulged A Not in a motif group | geometric IL_5TBW_045 IL_37497.2 | |
| IL_6Z6K_047 | 1/C1/1120:1122, 1/C1/1136:1138 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_95997.1 | |
| IL_6Z6K_048 | 1/C1/1167:1171, 1/C1/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_6Z6K_049 | 1/C1/1173:1180, 1/C1/1325:1326 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5TBW_049 IL_15861.7 | |
| IL_6Z6K_050 | 1/C1/1180:1182, 1/C1/1324:1325 | Single bulged U Not in a motif group | homologous IL_5TBW_050 IL_83039.13 | |
| IL_6Z6K_051 | 1/C1/1187:1194, 1/C1/1314:1319 | No text annotation Not in a motif group | homologous IL_8C3A_054 IL_27086.1 | |
| IL_6Z6K_052 | 1/C1/1194:1205, 1/C1/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_6Z6K_053 | 1/C1/1207:1209, 1/C1/1296:1297 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.13 | |
| IL_6Z6K_054 | 1/C1/1218:1226, 1/C1/1283:1287 | No text annotation Not in a motif group | homologous IL_8C3A_057 IL_90538.4 | |
| IL_6Z6K_055 | 1/C1/1234:1238, 1/C1/1250:1254 | No text annotation Not in a motif group | homologous IL_8C3A_058 IL_30542.3 | |
| IL_6Z6K_056 | 1/C1/1262:1266, 1/C1/1275:1277 | Major groove platform with extra cWW Not in a motif group | geometric IL_1MMS_002 IL_05564.2 | |
| IL_6Z6K_057 | 1/C1/1376:1378, 1/C1/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_6Z6K_058 | 1/C1/1385:1387, 1/C1/1420:1421 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.2 | |
| IL_6Z6K_059 | 1/C1/1388:1395, 1/C1/1415:1419 | No text annotation Not in a motif group | homologous IL_8C3A_063 IL_70923.2 | |
| IL_6Z6K_060 | 1/C1/1398:1400, 1/C1/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_6Z6K_061 | 1/C1/1444:1450, 1/C1/2354:2359 | No text annotation Not in a motif group | homologous IL_8C3A_065 IL_76042.2 | |
| IL_6Z6K_062 | 1/C1/1492:1495, 1/C1/1835:1836 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V9F_050 IL_50694.2 | |
| IL_6Z6K_063 | 1/C1/1501:1505, 1/C1/1513:1515 | C-loop Not in a motif group | geometric IL_7RQB_051 IL_63596.6 | |
| IL_6Z6K_064 | 1/C1/1532:1536, 1/C1/1585:1590 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_6Z6K_065 | 1/C1/1560:1563, 1/C1/1577:1579 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_6Z6K_066 | 1/C1/1618:1621, 1/C1/1824:1826 | No text annotation Not in a motif group | homologous IL_8C3A_070 IL_84698.1 | |
| IL_6Z6K_067 | 1/C1/1623:1625, 1/C1/1818:1822 | No text annotation Not in a motif group | homologous IL_8C3A_071 IL_82068.2 | |
| IL_6Z6K_068 | 1/C1/1627:1631, 1/C1/1811:1816 | No text annotation Not in a motif group | homologous IL_8C3A_072 IL_48431.1 | |
| IL_6Z6K_069 | 1/C1/1645:1649, 1/C1/1806:1810 | Triple sheared Not in a motif group | homologous IL_5TBW_067 IL_56467.8 | |
| IL_6Z6K_070 | 1/C1/1661:1663, 1/C1/1786:1788 | No text annotation Not in a motif group | homologous IL_8C3A_074 IL_95997.1 | |
| IL_6Z6K_071 | 1/C1/1669:1670, 1/C1/1778:1780 | Single bulged C Not in a motif group | geometric IL_5TBW_069 IL_61258.12 | |
| IL_6Z6K_072 | 1/C1/1670:1671, 1/C1/1776:1778 | No text annotation Not in a motif group | homologous IL_8C3A_076 IL_76488.2 | |
| IL_6Z6K_073 | 1/C1/1694:1698, 1/C1/1747:1752 | No text annotation Not in a motif group | homologous IL_8C3A_077 IL_69313.1 | |
| IL_6Z6K_074 | 1/C1/1702:1707, 1/C1/1737:1743 | No text annotation Not in a motif group | homologous IL_8C3A_078 IL_39753.1 | |
| IL_6Z6K_075 | 1/C1/1711:1717, 1/C1/1727:1733 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_6Z6K_076 | 1/C1/1883:1889, 1/C1/2346:2349 | No text annotation Not in a motif group | homologous IL_8C3A_080 IL_49460.2 | |
| IL_6Z6K_077 | 1/C1/1895:1897, 1/C1/2338:2340 | No text annotation Not in a motif group | homologous IL_8C3A_081 IL_54997.7 | |
| IL_6Z6K_078 | 1/C1/1898:1901, 1/C1/2336:2337 | No text annotation Not in a motif group | homologous IL_8C3A_082 IL_50694.2 | |
| IL_6Z6K_079 | 1/C1/1901:1906, 1/C1/2333:2336 | No text annotation Not in a motif group | homologous IL_8C3A_083 IL_82842.2 | |
| IL_6Z6K_080 | 1/C1/1918:1923, 1/C1/1928:1934 | No text annotation Not in a motif group | homologous IL_8C3A_084 IL_65969.2 | |
| IL_6Z6K_081 | 1/C1/1940:1942, 1/C1/2106:2108 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_6Z6K_082 | 1/C1/1947:1948, 1/C1/2098:2101 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_6Z6K_083 | 1/C1/2128:2129, 1/C1/2323:2325 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.2 | |
| IL_6Z6K_084 | 1/C1/2156:2161, 1/C1/2173:2180 | No text annotation Not in a motif group | homologous IL_8C3A_088 IL_64509.1 | |
| IL_6Z6K_085 | 1/C1/2196:2199, 1/C1/2245:2246 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.1 | |
| IL_6Z6K_086 | 1/C1/2200:2201, 1/C1/2241:2244 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_6Z6K_087 | 1/C1/2204:2206, 1/C1/2237:2238 | No text annotation Not in a motif group | homologous IL_8C3A_091 IL_76488.2 | |
| IL_6Z6K_088 | 1/C1/2206:2210, 1/C1/2235:2237 | No text annotation Not in a motif group | ||
| IL_6Z6K_089 | 1/C1/2211:2217, 1/C1/2228:2234 | No text annotation Not in a motif group | homologous IL_8C3A_093 IL_36973.6 | |
| IL_6Z6K_090 | 1/C1/2276:2277, 1/C1/2307:2310 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_089 IL_59677.2 | |
| IL_6Z6K_091 | 1/C1/2277:2288, 1/C1/2304:2307 | No text annotation Not in a motif group | homologous IL_8C3A_095 IL_81589.2 | |
| IL_6Z6K_092 | 1/C1/2391:2394, 1/C1/2986:2988 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_63450.2 | |
| IL_6Z6K_093 | 1/C1/2396:2398, 1/C1/2981:2984 | No text annotation Not in a motif group | homologous IL_8C3A_097 IL_54678.5 | |
| IL_6Z6K_094 | 1/C1/2409:2411, 1/C1/2811:2812 | No text annotation Not in a motif group | homologous IL_8C3A_098 IL_83039.13 | |
| IL_6Z6K_095 | 1/C1/2412:2413, 1/C1/2807:2810 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_6Z6K_096 | 1/C1/2423:2425, 1/C1/2604:2607 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_095 IL_38958.7 | |
| IL_6Z6K_097 | 1/C1/2520:2526, 1/C1/2584:2587 | No text annotation Not in a motif group | homologous IL_8C3A_106 IL_74114.1 | |
| IL_6Z6K_098 | 1/C1/2614:2615, 1/C1/2625:2627 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_37497.2 | |
| IL_6Z6K_099 | 1/C1/2666:2668, 1/C1/2686:2690 | No text annotation Not in a motif group | homologous IL_8C3A_108 IL_38958.7 | |
| IL_6Z6K_100 | 1/C1/2714:2716, 1/C1/2740:2741 | Single bulged A Not in a motif group | geometric IL_5TBW_013 IL_37497.2 | |
| IL_6Z6K_101 | 1/C1/2718:2721, 1/C1/2735:2738 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.2 | |
| IL_6Z6K_102 | 1/C1/2770:2773, 1/C1/2787:2788 | No text annotation Not in a motif group | homologous IL_8C3A_110 IL_76488.2 | |
| IL_6Z6K_103 | 1/C1/2823:2824, 1/C1/2865:2867 | Major groove platform Not in a motif group | geometric IL_7RQB_092 IL_27635.1 | |
| IL_6Z6K_104 | 1/C1/2824:2826, 1/C1/2863:2865 | No text annotation Not in a motif group | homologous IL_5TBW_103 IL_95997.1 | |
| IL_6Z6K_105 | 1/C1/2826:2828, 1/C1/2862:2863 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_6Z6K_106 | 1/C1/2828:2830, 1/C1/2858:2862 | No text annotation Not in a motif group | homologous IL_5TBW_105 IL_92788.2 | |
| IL_6Z6K_107 | 1/C1/2835:2839, 1/C1/2849:2853 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_6Z6K_108 | 1/C1/2876:2877, 1/C1/2949:2951 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_76223.2 | |
| IL_6Z6K_109 | 1/C1/2879:2881, 1/C1/2943:2947 | No text annotation Not in a motif group | homologous IL_8C3A_116 IL_90933.2 | |
| IL_6Z6K_110 | 1/C1/2881:2882, 1/C1/2940:2943 | No text annotation Not in a motif group | homologous IL_8C3A_117 IL_71530.2 | |
| IL_6Z6K_111 | 1/C1/2889:2891, 1/C1/2912:2914 | No text annotation Not in a motif group | homologous IL_8C3A_118 IL_51629.2 | |
| IL_6Z6K_112 | 1/C1/2891:2892, 1/C1/2909:2912 | Minor groove platform with intercalation Not in a motif group | geometric IL_5TBW_111 IL_95601.3 | |
| IL_6Z6K_113 | 1/C1/2918:2920, 1/C1/2926:2928 | No text annotation Not in a motif group | homologous IL_8C3A_120 IL_95997.1 | |
| IL_6Z6K_114 | 1/C1/2960:2961, 1/C1/2970:2972 | Single bulged A Not in a motif group | homologous IL_5TBW_113 IL_37497.2 | |
| IL_6Z6K_115 | 1/C1/3004:3007, 1/C1/3139:3144 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.9 | |
| IL_6Z6K_116 | 1/C1/3012:3014, 1/C1/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_6Z6K_117 | 1/C1/3018:3025, 1/C1/3030:3036 | No text annotation Not in a motif group | homologous IL_8C3A_125 IL_04346.7 | |
| IL_6Z6K_118 | 1/C1/3047:3051, 1/C1/3091:3094 | No text annotation Not in a motif group | homologous IL_8C3A_126 IL_37712.2 | |
| IL_6Z6K_119 | 1/C1/3054:3059, 1/C1/3084:3088 | No text annotation Not in a motif group | homologous IL_8C3A_127 IL_17136.1 | |
| IL_6Z6K_120 | 1/C1/3063:3064, 1/C1/3077:3080 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_71530.2 | |
| IL_6Z6K_121 | 1/C1/3103:3107, 1/C1/3127:3131 | No text annotation Not in a motif group | homologous IL_8C3A_129 IL_89002.2 | |
| IL_6Z6K_122 | 1/C1/3164:3166, 1/C1/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
| IL_6Z6K_123 | 1/C1/3168:3170, 1/C1/3280:3282 | No text annotation Not in a motif group | homologous IL_5TBW_122 IL_95997.1 | |
| IL_6Z6K_124 | 1/C1/3177:3179, 1/C1/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.2 | |
| IL_6Z6K_125 | 1/C1/3179:3188, 1/C1/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
| IL_6Z6K_126 | 1/C1/3193:3194, 1/C1/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_6Z6K_127 | 1/C1/3225:3229, 1/C1/3258:3260 | No text annotation Not in a motif group | homologous IL_8C3A_133 IL_19389.6 | |
| IL_6Z6K_128 | 1/C1/3233:3235, 1/C1/3252:3254 | No text annotation Not in a motif group | geometric IL_4LFB_059 IL_95997.1 | |
| IL_6Z6K_129 | 1/C1/3235:3238, 1/C1/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_128 IL_30621.2 | |
| IL_6Z6K_130 | 1/C1/3300:3303, 1/C1/3311:3314 | No text annotation Not in a motif group | homologous IL_8C3A_135 IL_30621.2 | |
| IL_6Z6K_131 | 1/C1/3318:3320, 1/C1/3387:3388 | No text annotation Not in a motif group | homologous IL_8C3A_136 IL_83039.13 | |
| IL_6Z6K_132 | 1/C1/3324:3325, 1/C1/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_6Z6K_133 | 1/C1/3328:3330, 1/C1/3373:3378 | No text annotation Not in a motif group | homologous IL_8C3A_138 IL_90933.2 | |
| IL_6Z6K_134 | 1/C1/3332:3337, 1/C1/3367:3371 | No text annotation Not in a motif group | homologous IL_8C3A_139 IL_83162.5 | |
| IL_6Z6K_135 | 1/C1/3340:3342, 1/C1/3363:3364 | No text annotation Not in a motif group | ||
| IL_6Z6K_136 | 1/C1/3342:3345, 1/C1/3360:3363 | No text annotation Not in a motif group | homologous IL_8C3A_141 IL_09705.9 | |
| IL_6Z6K_137 | 1/C1/3349:3350, 1/C1/3353:3356 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_136 IL_59677.2 | |
| IL_6Z6K_138 | 1/C2/24:26, 1/C2/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.12 | |
| IL_6Z6K_139 | 1/C2/35:37, 1/C2/471:473 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_51629.2 | |
| IL_6Z6K_140 | 1/C2/37:41, 1/C2/466:471 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_6Z6K_141 | 1/C2/42:48, 1/C2/431:433 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_6Z6K_142 | 1/C2/50:52, 1/C2/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_6Z6K_143 | 1/C2/58:63, 1/C2/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_6Z6K_144 | 1/C2/64:69, 1/C2/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_6Z6K_145 | 1/C2/109:112, 1/C2/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_6Z6K_146 | 1/C2/113:116, 1/C2/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_6Z6K_147 | 1/C2/117:122, 1/C2/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_6Z6K_148 | 1/C2/143:149, 1/C2/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_6Z6K_149 | 1/C2/150:152, 1/C2/162:164 | No text annotation Not in a motif group | homologous IL_4V88_395 IL_53251.2 | |
| IL_6Z6K_150 | 1/C2/186:190, 1/C2/195:199 | Triple sheared Not in a motif group | geometric IL_5J7L_274 IL_56467.8 | |
| IL_6Z6K_151 | 1/C2/204:206, 1/C2/259:263 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V88_397 IL_05564.2 | |
| IL_6Z6K_152 | 1/C2/206:208, 1/C2/257:259 | No text annotation Not in a motif group | geometric IL_2O3Y_001 IL_95997.1 | |
| IL_6Z6K_153 | 1/C2/265:267, 1/C2/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_6Z6K_154 | 1/C2/270:273, 1/C2/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_6Z6K_155 | 1/C2/275:276, 1/C2/279:281 | Single bulged U Not in a motif group | homologous IL_4V88_401 IL_83039.13 | |
| IL_6Z6K_156 | 1/C2/311:316, 1/C2/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6Z6K_157 | 1/C2/318:323, 1/C2/345:346 | No text annotation Not in a motif group | homologous IL_4V88_403 IL_48100.2 | |
| IL_6Z6K_158 | 1/C2/363:365, 1/C2/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_6Z6K_159 | 1/C2/389:391, 1/C2/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_6Z6K_160 | 1/C2/411:413, 1/C2/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_6Z6K_161 | 1/C2/439:441, 1/C2/463:464 | Single bulged U Not in a motif group | geometric IL_4LFB_014 IL_83039.13 | |
| IL_6Z6K_162 | 1/C2/443:447, 1/C2/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6Z6K_163 | 1/C2/447:448, 1/C2/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6Z6K_164 | 1/C2/481:482, 1/C2/505:507 | Single bulged A Not in a motif group | homologous IL_4V88_409 IL_37497.2 | |
| IL_6Z6K_165 | 1/C2/514:516, 1/C2/536:543 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_082 IL_38958.7 | |
| IL_6Z6K_166 | 1/C2/517:518, 1/C2/533:535 | Minor groove platform Not in a motif group | geometric IL_5ML7_009 IL_42622.2 | |
| IL_6Z6K_167 | 1/C2/518:520, 1/C2/532:533 | Minor groove platform Not in a motif group | homologous IL_4V88_412 IL_93353.1 | |
| IL_6Z6K_168 | 1/C2/550:557, 1/C2/587:588 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.7 | |
| IL_6Z6K_169 | 1/C2/557:559, 1/C2/586:587 | Single bulged U Not in a motif group | homologous IL_4V88_414 IL_83039.13 | |
| IL_6Z6K_170 | 1/C2/562:568, 1/C2/575:583 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_6Z6K_171 | 1/C2/616:622, 1/C2/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_6Z6K_172 | 1/C2/624:626, 1/C2/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6Z6K_173 | 1/C2/627:631, 1/C2/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_6Z6K_174 | 1/C2/646:648, 1/C2/686:688 | No text annotation Not in a motif group | homologous IL_4V88_419 IL_95997.1 | |
| IL_6Z6K_175 | 1/C2/746:747, 1/C2/802:805 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_6Z6K_176 | 1/C2/748:750, 1/C2/799:801 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_6Z6K_177 | 1/C2/751:759, 1/C2/791:798 | No text annotation Not in a motif group | homologous IL_4V88_425 IL_69091.1 | |
| IL_6Z6K_178 | 1/C2/819:822, 1/C2/850:852 | No text annotation Not in a motif group | homologous IL_4V88_426 IL_95997.1 | |
| IL_6Z6K_179 | 1/C2/865:866, 1/C2/962:965 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.2 | |
| IL_6Z6K_180 | 1/C2/868:870, 1/C2/957:960 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_6Z6K_181 | 1/C2/871:874, 1/C2/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_6Z6K_182 | 1/C2/874:878, 1/C2/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_6Z6K_183 | 1/C2/885:888, 1/C2/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_6Z6K_184 | 1/C2/893:895, 1/C2/917:919 | No text annotation Not in a motif group | geometric IL_5ZTM_002 IL_95997.1 | |
| IL_6Z6K_185 | 1/C2/895:899, 1/C2/910:917 | Kink-turn Not in a motif group | homologous IL_4V88_434 IL_45067.2 | |
| IL_6Z6K_186 | 1/C2/985:990, 1/C2/1014:1016 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_6Z6K_187 | 1/C2/990:994, 1/C2/1010:1014 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_436 IL_17136.1 | |
| IL_6Z6K_188 | 1/C2/1034:1036, 1/C2/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6Z6K_189 | 1/C2/1041:1044, 1/C2/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_6Z6K_190 | 1/C2/1051:1053, 1/C2/1066:1067 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_6Z6K_191 | 1/C2/1111:1118, 1/C2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_6Z6K_192 | 1/C2/1146:1147, 1/C2/1630:1632 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.2 | |
| IL_6Z6K_193 | 1/C2/1149:1151, 1/C2/1627:1628 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_6Z6K_194 | 1/C2/1157:1160, 1/C2/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_6Z6K_195 | 1/C2/1173:1175, 1/C2/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_6Z6K_196 | 1/C2/1178:1179, 1/C2/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_6Z6K_197 | 1/C2/1209:1210, 1/C2/1453:1455 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6Z6K_198 | 1/C2/1213:1216, 1/C2/1448:1450 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_6Z6K_199 | 1/C2/1224:1233, 1/C2/1252:1259 | No text annotation Not in a motif group | ||
| IL_6Z6K_200 | 1/C2/1234:1236, 1/C2/1249:1251 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_10023.1 | |
| IL_6Z6K_201 | 1/C2/1268:1270, 1/C2/1440:1441 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_6Z6K_202 | 1/C2/1271:1276, 1/C2/1436:1439 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_6Z6K_203 | 1/C2/1276:1278, 1/C2/1430:1436 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_451 IL_92788.2 | |
| IL_6Z6K_204 | 1/C2/1280:1281, 1/C2/1426:1428 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_6Z6K_205 | 1/C2/1290:1292, 1/C2/1323:1325 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_6Z6K_206 | 1/C2/1306:1308, 1/C2/1317:1318 | Minor groove platform Not in a motif group | geometric IL_4V88_454 IL_93353.1 | |
| IL_6Z6K_207 | 1/C2/1339:1342, 1/C2/1383:1385 | No text annotation Not in a motif group | homologous IL_4V88_455 IL_10023.1 | |
| IL_6Z6K_208 | 1/C2/1345:1348, 1/C2/1377:1380 | Minor groove platform Not in a motif group | homologous IL_4V88_456 IL_76458.1 | |
| IL_6Z6K_209 | 1/C2/1352:1354, 1/C2/1369:1373 | No text annotation Not in a motif group | homologous IL_4V88_457 IL_95997.1 | |
| IL_6Z6K_210 | 1/C2/1389:1391, 1/C2/1407:1412 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_458 IL_58032.1 | |
| IL_6Z6K_211 | 1/C2/1480:1487, 1/C2/1519:1527 | No text annotation Not in a motif group | homologous IL_4V88_459 IL_10447.1 | |
| IL_6Z6K_212 | 1/C2/1488:1494, 1/C2/1513:1518 | No text annotation Not in a motif group | homologous IL_4V88_460 IL_75461.4 | |
| IL_6Z6K_213 | 1/C2/1495:1498, 1/C2/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
| IL_6Z6K_214 | 1/C2/1540:1545, 1/C2/1566:1571 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_6Z6K_215 | 1/C2/1636:1638, 1/C2/1764:1767 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_6Z6K_216 | 1/C2/1638:1641, 1/C2/1760:1764 | No text annotation Not in a motif group | homologous IL_4V88_464 IL_99670.1 | |
| IL_6Z6K_217 | 1/C2/1642:1644, 1/C2/1757:1759 | No text annotation Not in a motif group | geometric IL_5MWI_007 IL_95997.1 | |
| IL_6Z6K_218 | 1/C2/1644:1647, 1/C2/1753:1757 | No text annotation Not in a motif group | geometric IL_2O3V_003 IL_04655.1 | |
| IL_6Z6K_219 | 1/C2/1650:1652, 1/C2/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_6Z6K_220 | 1/C2/1653:1656, 1/C2/1744:1747 | Double sheared Not in a motif group | geometric IL_4V88_468 IL_09705.9 | |
| IL_6Z6K_221 | 1/C2/1656:1658, 1/C2/1743:1744 | Single bulged U Not in a motif group | homologous IL_4V88_469 IL_83039.13 | |
| IL_6Z6K_222 | 1/C2/1665:1667, 1/C2/1734:1736 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_6Z6K_223 | 1/C2/1669:1672, 1/C2/1729:1732 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_6Z6K_224 | 1/C2/1672:1674, 1/C2/1727:1729 | No text annotation Not in a motif group | geometric IL_3HHN_004 IL_95997.1 | |
| IL_6Z6K_225 | 1/C2/1675:1678, 1/C2/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_6Z6K_226 | 1/C2/1678:1682, 1/C2/1719:1723 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 | |
| IL_6Z6K_227 | 1/C3/44:64, 1/C3/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_44998.1 | |
| IL_6Z6K_228 | 1/C3/64:66, 1/C3/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_145 IL_82068.2 | |
| IL_6Z6K_229 | 1/C3/68:69, 1/C3/89:91 | Single bulged U Not in a motif group | homologous IL_5TBW_146 IL_83039.13 | |
| IL_6Z6K_230 | 1/C4/15:16, 1/C4/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_6Z6K_231 | 1/C4/21:27, 1/C4/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_6Z6K_232 | 1/C4/28:29, 1/C4/49:52 | Minor groove platform Not in a motif group | geometric IL_5TBW_374 IL_63797.2 | |
| IL_6Z6K_233 | 1/C4/29:30, 1/C4/47:49 | Single stack bend Not in a motif group | homologous IL_5TBW_375 IL_76488.2 | |
| IL_6Z6K_234 | 1/C4/32:36, 1/C4/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_5TBW_376 IL_58103.6 | |
| IL_6Z6K_235 | 1/C4/72:80, 1/C4/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_6Z6K_236 | 1/C4/84:87, 1/C4/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6Z6K_017 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6Z6K_001 | 1/C1/113:123, 1/C1/149:158, 1/C1/263:267 | No text annotation Not in a motif group | ||
| J3_6Z6K_002 | 1/C1/369:376, 1/C1/403:404, 1/C3/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_6Z6K_003 | 1/C1/502:503, 1/C1/588:597, 1/C1/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_6Z6K_004 | 1/C1/814:820, 1/C1/905:907, 1/C1/923:926 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_6Z6K_005 | 1/C1/829:831, 1/C1/863:867, 1/C1/892:895 | No text annotation Not in a motif group | homologous J3_8C3A_004 NA | |
| J3_6Z6K_006 | 1/C1/986:987, 1/C1/1062:1066, 1/C1/1092:1098 | No text annotation Not in a motif group | ||
| J3_6Z6K_007 | 1/C1/1230:1232, 1/C1/1256:1262, 1/C1/1277:1279 | No text annotation Not in a motif group | homologous J3_5TBW_007 NA | |
| J3_6Z6K_008 | 1/C1/1479:1485, 1/C1/1857:1859, 1/C1/1871:1874 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_6Z6K_009 | 1/C1/1488:1491, 1/C1/1837:1843, 1/C1/1852:1854 | No text annotation Not in a motif group | homologous J3_8C3A_007 NA | |
| J3_6Z6K_010 | 1/C1/1526:1531, 1/C1/1591:1595, 1/C1/1612:1613 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_6Z6K_011 | 1/C1/1631:1632, 1/C1/1641:1645, 1/C1/1810:1811 | No text annotation Not in a motif group | ||
| J3_6Z6K_012 | 1/C1/2432:2435, 1/C1/2512:2516, 1/C1/2591:2597 | No text annotation Not in a motif group | ||
| J3_6Z6K_013 | 1/C1/2529:2532, 1/C1/2547:2563, 1/C1/2578:2581 | No text annotation Not in a motif group | ||
| J3_6Z6K_014 | 1/C1/2664:2666, 1/C1/2690:2692, 1/C1/2701:2706 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_6Z6K_015 | 1/C1/2886:2889, 1/C1/2914:2916, 1/C1/2930:2936 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_6Z6K_016 | 1/C1/3298:3300, 1/C1/3314:3318, 1/C1/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_6Z6K_017 | 1/C2/41:42, 1/C2/433:439, 1/C2/464:466 | No text annotation Not in a motif group | ||
| J3_6Z6K_018 | 1/C2/633:635, 1/C2/861:865, 1/C2/965:966 | No text annotation Not in a motif group | ||
| J3_6Z6K_019 | 1/C2/760:763, 1/C2/773:775, 1/C2/785:790 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_6Z6K_020 | 1/C2/881:884, 1/C2/928:936, 1/C2/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_6Z6K_021 | 1/C2/1037:1039, 1/C2/1079:1083, 1/C2/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_6Z6K_022 | 1/C2/1161:1164, 1/C2/1581:1587, 1/C2/1609:1616 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_6Z6K_023 | 1/C2/1168:1171, 1/C2/1468:1470, 1/C2/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_6Z6K_024 | 1/C2/1180:1187, 1/C2/1198:1209, 1/C2/1455:1458 | No text annotation Not in a motif group | ||
| J3_6Z6K_025 | 1/C2/1216:1220, 1/C2/1263:1267, 1/C2/1442:1448 | No text annotation Not in a motif group | homologous J3_8C3A_041 NA | |
| J3_6Z6K_026 | 1/C2/1283:1288, 1/C2/1327:1332, 1/C2/1419:1424 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_6Z6K_027 | 1/C2/1293:1294, 1/C2/1303:1306, 1/C2/1318:1322 | No text annotation Not in a motif group | ||
| J3_6Z6K_028 | 1/C2/1336:1338, 1/C2/1386:1389, 1/C2/1412:1415 | No text annotation Not in a motif group | homologous J3_4V88_040 NA | |
| J3_6Z6K_029 | 1/C2/1470:1474, 1/C2/1533:1540, 1/C2/1571:1574 | No text annotation Not in a motif group | homologous J3_4V88_041 NA | |
| J3_6Z6K_030 | 1/C4/9:14, 1/C4/66:67, 1/C4/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA |
Problematic loops
No problematic loops
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