5V93 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5V93_105 | 1/A/59:68 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_5V93_002 | 1/A/87:96 | Pseudoknot geometry | homologous HL_4WF9_002 HL_00911.2 | |
| HL_5V93_003 | 1/A/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.7 | |
| HL_5V93_004 | 1/A/137:144 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_98423.3 | |
| HL_5V93_005 | 1/A/160:170 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_5V93_006 | 1/A/196:203 | No text annotation | homologous HL_4WF9_006 HL_48677.1 | |
| HL_5V93_007 | 1/A/227:232 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_5V93_008 | 1/A/248:254 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_5V93_011 | 1/A/388:395 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 NA | |
| HL_5V93_012 | 1/A/410:418 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_5V93_013 | 1/A/470:482 | No text annotation | homologous HL_4WF9_013 HL_69139.1 | |
| HL_5V93_014 | 1/A/499:506 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.5 | |
| HL_5V93_015 | 1/A/551:556 | GNRA | homologous HL_4WF9_015 HL_34789.4 | |
| HL_5V93_016 | 1/A/576:581 | GNRA | homologous HL_5J7L_148 NA | |
| HL_5V93_018 | 1/A/668:677 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_018 HL_33597.3 | |
| HL_5V93_020 | 1/A/732:739 | GNRA with extra cWW | geometric HL_7A0S_056 HL_87268.2 | |
| HL_5V93_107 | 1/A/745:751 | GNRA | homologous HL_9DFE_019 HL_34789.4 | |
| HL_5V93_024 | 1/A/873:882 | No text annotation | homologous HL_7A0S_022 HL_50204.1 | |
| HL_5V93_025 | 1/A/908:914 | No text annotation | homologous HL_4WF9_024 HL_92935.1 | |
| HL_5V93_026 | 1/A/955:960 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_5V93_028 | 1/A/1083:1090 | GNRA | homologous HL_7A0S_026 HL_34789.4 | |
| HL_5V93_108 | 1/A/1107:1114 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_5V93_033 | 1/A/1353:1358 | GNRA | homologous HL_7A0S_031 HL_34789.4 | |
| HL_5V93_121 | 1/A/1412:1420 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_33597.3 | |
| HL_5V93_035 | 1/A/1450:1464 | No text annotation | ||
| HL_5V93_036 | 1/A/1494:1499 | GNRA | homologous HL_7RQB_035 NA | |
| HL_5V93_037 | 1/A/1520:1529 | No text annotation | homologous HL_4WF9_035 HL_77449.1 | |
| HL_5V93_039 | 1/A/1688:1699 | Pseudoknot | homologous HL_7A0S_036 HL_00824.1 | |
| HL_5V93_040 | 1/A/1729:1735 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_5V93_041 | 1/A/1768:1779 | No text annotation | ||
| HL_5V93_042 | 1/A/1802:1805 | Mini UNCG | geometric HL_7A0S_039 HL_90436.3 | |
| HL_5V93_043 | 1/A/1847:1854 | No text annotation | homologous HL_4WF9_038 HL_28592.2 | |
| HL_5V93_112 | 1/A/1865:1871 | GNRA | homologous HL_5J7L_174 NA | |
| HL_5V93_045 | 1/A/1926:1931 | UNCG | homologous HL_7A0S_042 HL_61337.3 | |
| HL_5V93_046 | 1/A/1961:1967 | No text annotation | geometric HL_7A0S_007 HL_51020.2 | |
| HL_5V93_047 | 1/A/1986:1990 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_5V93_048 | 1/A/2011:2021 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_5V93_049 | 1/A/2040:2045 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_5V93_051 | 1/A/2148:2158 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_5V93_122 | 1/A/2187:2195 | No text annotation | homologous HL_4WF9_046 HL_61418.2 | |
| HL_5V93_053 | 1/A/2265:2274 | No text annotation | homologous HL_7A0S_049 HL_78372.1 | |
| HL_5V93_055 | 1/A/2445:2454 | No text annotation | homologous HL_4WF9_069 NA | |
| HL_5V93_056 | 1/A/2486:2494 | No text annotation | homologous HL_7A0S_052 HL_11974.2 | |
| HL_5V93_057 | 1/A/2502:2514 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_5V93_058 | 1/A/2541:2551 | No text annotation | homologous HL_7RQB_055 NA | |
| HL_5V93_059 | 1/A/2562:2569 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_5V93_060 | 1/A/2593:2600 | GNRA with extra cWW | homologous HL_4WF9_053 HL_87268.2 | |
| HL_5V93_061 | 1/A/2612:2617 | GNRA | homologous HL_7A0S_057 HL_34789.4 | |
| HL_5V93_062 | 1/A/2642:2651 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_5V93_115 | 1/A/2708:2718 | No text annotation | ||
| HL_5V93_063 | 1/A/2709:2717 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
| HL_5V93_116 | 1/A/2766:2773 | GNRA variation | homologous HL_4WF9_057 HL_46665.2 | |
| HL_5V93_065 | 1/A/2789:2795 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_5V93_066 | 1/A/2832:2837 | GNRA | homologous HL_7A0S_062 HL_34789.4 | |
| HL_5V93_068 | 1/A/2939:2944 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_12125.2 | |
| HL_5V93_117 | 1/A/2983:2997 | No text annotation | homologous HL_9DFE_064 HL_53269.2 | |
| HL_5V93_071 | 1/A/3054:3062 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_5V93_072 | 1/A/3091:3096 | GNRA | homologous HL_7A0S_068 HL_34789.4 | |
| HL_5V93_118 | 1/B/33:47 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_5V93_073 | 1/B/37:43 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_5V93_075 | 1/a/15:25 | No text annotation | homologous HL_4LFB_001 HL_73535.1 | |
| HL_5V93_081 | 1/a/295:300 | GNRA | homologous HL_4LFB_007 HL_34789.4 | |
| HL_5V93_120 | 1/a/319:332 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_5V93_087 | 1/a/513:518 | No text annotation | geometric HL_2Y9H_003 HL_75660.7 | |
| HL_5V93_088 | 1/a/608:614 | GNRA-like with tWH | homologous HL_4LFB_014 HL_86621.1 | |
| HL_5V93_089 | 1/a/680:689 | No text annotation | homologous HL_4LFB_015 HL_38491.2 | |
| HL_5V93_090 | 1/a/717:722 | GNRA | homologous HL_4LFB_016 HL_34789.4 | |
| HL_5V93_091 | 1/a/777:787 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_5V93_093 | 1/a/855:860 | GNRA | homologous HL_4LFB_019 HL_34789.4 | |
| HL_5V93_094 | 1/a/890:895 | GNRA | homologous HL_6CZR_091 NA | |
| HL_5V93_096 | 1/a/1067:1072 | GNRA | homologous HL_4LFB_024 HL_34789.4 | |
| HL_5V93_097 | 1/a/1080:1087 | T-loop related | homologous HL_4LFB_025 HL_63894.2 | |
| HL_5V93_104 | 1/a/1508:1513 | GNRA | homologous HL_6CZR_103 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5V93_001 | No text annotation | ||
| HL_5V93_009 | No text annotation | ||
| HL_5V93_010 | No text annotation | ||
| HL_5V93_106 | No text annotation | ||
| HL_5V93_017 | No text annotation | ||
| HL_5V93_019 | No text annotation | ||
| HL_5V93_021 | No text annotation | ||
| HL_5V93_022 | No text annotation | ||
| HL_5V93_023 | No text annotation | ||
| HL_5V93_027 | No text annotation | ||
| HL_5V93_029 | No text annotation | ||
| HL_5V93_109 | No text annotation | ||
| HL_5V93_030 | No text annotation | ||
| HL_5V93_031 | No text annotation | ||
| HL_5V93_032 | Externally structured | ||
| HL_5V93_034 | No text annotation | ||
| HL_5V93_110 | No text annotation | ||
| HL_5V93_111 | No text annotation | ||
| HL_5V93_038 | No text annotation | ||
| HL_5V93_044 | GNRA with extra cWW | ||
| HL_5V93_050 | No text annotation | ||
| HL_5V93_113 | No text annotation | ||
| HL_5V93_052 | tRNA D-loop | ||
| HL_5V93_054 | No text annotation | ||
| HL_5V93_114 | No text annotation | ||
| HL_5V93_064 | No text annotation | ||
| HL_5V93_067 | GNRA | ||
| HL_5V93_069 | No text annotation | ||
| HL_5V93_070 | GNRA-like with tWH | ||
| HL_5V93_074 | No text annotation | ||
| HL_5V93_076 | Mini UNCG | ||
| HL_5V93_119 | No text annotation | ||
| HL_5V93_077 | GNRA with extra cWW | ||
| HL_5V93_123 | GNRA | ||
| HL_5V93_078 | Mini UNCG related | ||
| HL_5V93_079 | No text annotation | ||
| HL_5V93_080 | GNRA related | ||
| HL_5V93_082 | No text annotation | ||
| HL_5V93_083 | UNCG | ||
| HL_5V93_084 | GNRA | ||
| HL_5V93_085 | No text annotation | ||
| HL_5V93_086 | No text annotation | ||
| HL_5V93_092 | No text annotation | ||
| HL_5V93_095 | GNRA | ||
| HL_5V93_098 | No text annotation | ||
| HL_5V93_099 | GNRA | ||
| HL_5V93_100 | GNRA | ||
| HL_5V93_101 | T-loop with 3 stacked bulged bases | ||
| HL_5V93_102 | No text annotation | ||
| HL_5V93_103 | UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5V93_001 | 1/A/24:30, 1/A/598:604 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_22311.1 | |
| IL_5V93_002 | 1/A/36:37, 1/A/531:533 | Single bulged A | homologous IL_7A0S_002 IL_14190.2 | |
| IL_5V93_217 | 1/A/42:44, 1/A/523:526 | Minor groove platform with extra cWW | homologous IL_4WF9_003 IL_82096.1 | |
| IL_5V93_003 | 1/A/43:44, 1/A/523:525 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_5V93_004 | 1/A/81:85, 1/A/98:105 | Kink-turn | homologous IL_4WF9_004 IL_71972.1 | |
| IL_5V93_218 | 1/A/185:186, 1/A/214:216 | Single stack bend | homologous IL_7A0S_005 IL_15011.2 | |
| IL_5V93_006 | 1/A/190:196, 1/A/203:210 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4V9F_006 IL_62167.3 | |
| IL_5V93_007 | 1/A/241:247, 1/A/255:260 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_5V93_219 | 1/A/357:365, 1/A/439:440 | No text annotation | ||
| IL_5V93_176 | 1/A/375:377, 1/A/426:430 | No text annotation | homologous IL_9DFE_011 IL_76658.1 | |
| IL_5V93_013 | 1/A/383:385, 1/A/398:399 | Single bulged U | geometric IL_3TZR_002 IL_97561.3 | |
| IL_5V93_014 | 1/A/624:627, 1/A/656:659 | Double sheared | geometric IL_5J7L_256 NA | |
| IL_5V93_177 | 1/A/624:631, 1/A/652:659 | No text annotation | ||
| IL_5V93_015 | 1/A/627:631, 1/A/652:656 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_5V93_017 | 1/A/693:695, 1/A/794:795 | Single bulged A | homologous IL_7A0S_012 IL_14190.2 | |
| IL_5V93_018 | 1/A/709:713, 1/A/722:726 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_5V93_178 | 1/A/801:807, 1/A/928:937 | No text annotation | ||
| IL_5V93_020 | 1/A/826:827, 1/A/892:894 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_5V93_021 | 1/A/831:832, 1/A/857:859 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_5V93_179 | 1/A/831:836, 1/A/853:859 | No text annotation | geometric IL_4V88_462 NA | |
| IL_5V93_022 | 1/A/832:837, 1/A/852:857 | Triple sheared with non-canonical cWW | geometric IL_7A0S_018 IL_29495.1 | |
| IL_5V93_023 | 1/A/867:869, 1/A/886:887 | Major groove platform | homologous IL_5J7L_264 NA | |
| IL_5V93_024 | 1/A/904:906, 1/A/916:920 | Multiple bulged bases | homologous IL_5J7L_265 NA | |
| IL_5V93_025 | 1/A/966:967, 1/A/1068:1070 | Single stack bend | homologous IL_7A0S_022 IL_15011.2 | |
| IL_5V93_180 | 1/A/966:968, 1/A/1067:1070 | No text annotation | geometric IL_4V87_185 NA | |
| IL_5V93_026 | 1/A/973:978, 1/A/1057:1062 | No text annotation | ||
| IL_5V93_181 | 1/A/973:980, 1/A/1055:1062 | No text annotation | ||
| IL_5V93_027 | 1/A/985:992, 1/A/1042:1050 | No text annotation | ||
| IL_5V93_028 | 1/A/993:998, 1/A/1038:1041 | C-loop | homologous IL_7RQB_029 NA | |
| IL_5V93_029 | 1/A/1000:1002, 1/A/1034:1036 | Isolated cWS basepair | homologous IL_4WF9_034 NA | |
| IL_5V93_184 | 1/A/1077:1078, 1/A/1095:1097 | Single bulged A | geometric IL_1GID_009 NA | |
| IL_5V93_031 | 1/A/1123:1125, 1/A/1289:1290 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_5V93_185 | 1/A/1127:1131, 1/A/1283:1287 | UAA/GAN | homologous IL_7A0S_033 IL_08938.1 | |
| IL_5V93_033 | 1/A/1133:1140, 1/A/1280:1281 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_5V93_034 | 1/A/1140:1142, 1/A/1279:1280 | Single bulged U | homologous IL_4WF9_038 IL_97561.3 | |
| IL_5V93_035 | 1/A/1147:1153, 1/A/1269:1274 | No text annotation | geometric IL_7RQB_039 NA | |
| IL_5V93_036 | 1/A/1153:1159, 1/A/1253:1269 | No text annotation | geometric IL_4WF9_040 IL_50715.4 | |
| IL_5V93_186 | 1/A/1160:1163, 1/A/1250:1252 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_76400.1 | |
| IL_5V93_040 | 1/A/1328:1330, 1/A/1378:1381 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.5 | |
| IL_5V93_221 | 1/A/1339:1346, 1/A/1365:1369 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_5V93_042 | 1/A/1393:1400, 1/A/2249:2255 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_5V93_043 | 1/A/1481:1486, 1/A/1507:1512 | UAA/GAN with extra cWW | geometric IL_4WF9_104 IL_91079.1 | |
| IL_5V93_044 | 1/A/1488:1492, 1/A/1501:1505 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_05821.1 | |
| IL_5V93_052 | 1/A/1655:1659, 1/A/1814:1817 | Other IL | homologous IL_4WF9_054 IL_74317.1 | |
| IL_5V93_222 | 1/A/1670:1673, 1/A/1794:1798 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_5V93_054 | 1/A/1675:1678, 1/A/1788:1792 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_5V93_191 | 1/A/1706:1709, 1/A/1759:1763 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_5V93_056 | 1/A/1711:1716, 1/A/1752:1757 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_5V93_057 | 1/A/1719:1720, 1/A/1743:1749 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_5V93_058 | 1/A/1726:1728, 1/A/1736:1737 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_5V93_059 | 1/A/1886:1891, 1/A/2242:2244 | No text annotation | ||
| IL_5V93_060 | 1/A/1897:1900, 1/A/2233:2236 | No text annotation | ||
| IL_5V93_192 | 1/A/1898:1904, 1/A/2231:2235 | No text annotation | ||
| IL_5V93_061 | 1/A/1900:1904, 1/A/2231:2233 | No text annotation | ||
| IL_5V93_062 | 1/A/1904:1909, 1/A/2229:2231 | No text annotation | ||
| IL_5V93_063 | 1/A/1921:1926, 1/A/1931:1937 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_5V93_193 | 1/A/1947:1960, 1/A/1968:1980 | No text annotation | ||
| IL_5V93_064 | 1/A/2032:2038, 1/A/2047:2055 | Kink-turn related | homologous IL_4WF9_069 IL_17069.6 | |
| IL_5V93_065 | 1/A/2070:2074, 1/A/2140:2142 | No text annotation | ||
| IL_5V93_194 | 1/A/2074:2078, 1/A/2134:2140 | No text annotation | ||
| IL_5V93_066 | 1/A/2075:2079, 1/A/2133:2139 | No text annotation | ||
| IL_5V93_067 | 1/A/2080:2083, 1/A/2131:2132 | Major groove minor groove platform; mini C-loop | homologous IL_7A0S_068 IL_73108.2 | |
| IL_5V93_068 | 1/A/2085:2089, 1/A/2125:2129 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_5V93_069 | 1/A/2090:2095, 1/A/2119:2124 | No text annotation | ||
| IL_5V93_195 | 1/A/2098:2101, 1/A/2112:2116 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_5V93_071 | 1/A/2171:2172, 1/A/2202:2205 | Major groove intercalation | geometric IL_1NBS_009 IL_71421.2 | |
| IL_5V93_072 | 1/A/2172:2184, 1/A/2198:2202 | No text annotation | ||
| IL_5V93_073 | 1/A/2288:2290, 1/A/2855:2856 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_5V93_074 | 1/A/2292:2294, 1/A/2850:2853 | Major groove platform with intercalation | geometric IL_5TBW_092 NA | |
| IL_5V93_075 | 1/A/2306:2310, 1/A/2674:2680 | No text annotation | geometric IL_9JA9_001 IL_71154.3 | |
| IL_5V93_076 | 1/A/2316:2321, 1/A/2473:2479 | No text annotation | ||
| IL_5V93_077 | 1/A/2322:2324, 1/A/2470:2472 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_71625.3 | |
| IL_5V93_223 | 1/A/2439:2441, 1/A/2458:2459 | Single bulged G | homologous IL_4WF9_125 IL_28408.2 | |
| IL_5V93_080 | 1/A/2588:2591, 1/A/2602:2605 | Double sheared | homologous IL_4WF9_087 IL_58355.2 | |
| IL_5V93_081 | 1/A/2639:2641, 1/A/2652:2653 | No text annotation | ||
| IL_5V93_082 | 1/A/2691:2692, 1/A/2736:2738 | Single stack bend | homologous IL_4WF9_089 IL_15011.2 | |
| IL_5V93_083 | 1/A/2692:2693, 1/A/2734:2736 | Major groove platform | geometric IL_3OXE_003 IL_48076.8 | |
| IL_5V93_200 | 1/A/2695:2697, 1/A/2731:2732 | Major groove platform | homologous IL_7A0S_085 IL_48076.8 | |
| IL_5V93_085 | 1/A/2697:2699, 1/A/2727:2731 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 NA | |
| IL_5V93_201 | 1/A/2697:2701, 1/A/2725:2731 | No text annotation | ||
| IL_5V93_086 | 1/A/2699:2702, 1/A/2724:2727 | Tandem non-canonical cWW pairs | geometric IL_6JDV_002 IL_15225.2 | |
| IL_5V93_087 | 1/A/2704:2708, 1/A/2718:2722 | Double sheared with non-canonical cWW | homologous IL_4WF9_093 IL_87767.2 | |
| IL_5V93_088 | 1/A/2745:2746, 1/A/2818:2820 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_5V93_089 | 1/A/2748:2752, 1/A/2808:2816 | No text annotation | ||
| IL_5V93_224 | 1/A/2760:2761, 1/A/2778:2781 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_94991.2 | |
| IL_5V93_091 | 1/A/2829:2830, 1/A/2839:2841 | Single bulged A | homologous IL_5J7L_344 NA | |
| IL_5V93_204 | 1/A/2874:2878, 1/A/3012:3020 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
| IL_5V93_094 | 1/A/2914:2915, 1/A/2968:2970 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_5V93_095 | 1/A/2918:2922, 1/A/2963:2965 | C-loop | homologous IL_7RQB_104 NA | |
| IL_5V93_096 | 1/A/2925:2929, 1/A/2956:2960 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_82016.1 | |
| IL_5V93_097 | 1/A/2933:2934, 1/A/2949:2952 | Multiple bulged bases | homologous IL_4WF9_103 IL_44609.2 | |
| IL_5V93_098 | 1/A/2975:2980, 1/A/3000:3005 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_5V93_225 | 1/A/3073:3075, 1/A/3112:3115 | Isolated non-canonical cWW with bulges | geometric IL_5ML7_010 IL_68118.3 | |
| IL_5V93_100 | 1/A/3078:3080, 1/A/3106:3109 | Decoding loop related | homologous IL_7A0S_100 IL_05502.1 | |
| IL_5V93_101 | 1/A/3082:3087, 1/A/3100:3104 | No text annotation | homologous IL_7A0S_101 IL_48489.1 | |
| IL_5V93_102 | 1/B/16:17, 1/B/64:66 | Major groove intercalation | homologous IL_4V9F_101 IL_14190.2 | |
| IL_5V93_103 | 1/B/22:28, 1/B/54:59 | No text annotation | geometric IL_9E6Q_106 IL_41504.1 | |
| IL_5V93_104 | 1/B/29:30, 1/B/50:53 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_5V93_105 | 1/B/33:37, 1/B/43:47 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.12 | |
| IL_5V93_226 | 1/B/70:78, 1/B/93:101 | Bacterial 5S Loop E | homologous IL_9DFE_114 IL_71138.1 | |
| IL_5V93_106 | 1/a/33:35, 1/a/543:544 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_5V93_108 | 1/a/50:55, 1/a/358:360 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_5V93_109 | 1/a/57:59, 1/a/355:356 | Minor groove platform | homologous IL_4LFB_004 IL_34520.3 | |
| IL_5V93_115 | 1/a/128:132, 1/a/226:229 | No text annotation | homologous IL_4LFB_008 IL_60988.2 | |
| IL_5V93_117 | 1/a/241:246, 1/a/276:283 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_5V93_209 | 1/a/369:375, 1/a/386:390 | No text annotation | geometric IL_4LFB_048 IL_89862.1 | |
| IL_5V93_128 | 1/a/506:512, 1/a/519:527 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_5V93_129 | 1/a/560:566, 1/a/873:874 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_5V93_130 | 1/a/571:575, 1/a/748:752 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_5V93_131 | 1/a/585:587, 1/a/635:636 | Major groove platform | homologous IL_4LFB_024 IL_48076.8 | |
| IL_5V93_134 | 1/a/596:602, 1/a/620:624 | No text annotation | geometric IL_8C3A_433 NA | |
| IL_5V93_136 | 1/a/653:657, 1/a/731:734 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_5V93_137 | 1/a/664:669, 1/a/703:708 | No text annotation | homologous IL_4LFB_030 NA | |
| IL_5V93_138 | 1/a/675:679, 1/a/690:697 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_5V93_139 | 1/a/765:769, 1/a/795:796 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_5V93_140 | 1/a/770:774, 1/a/790:794 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_5V93_141 | 1/a/880:887, 1/a/898:903 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_5V93_227 | 1/a/915:916, 1/a/1386:1388 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_5V93_143 | 1/a/918:920, 1/a/1383:1384 | Single bulged G | homologous IL_5J7L_040 NA | |
| IL_5V93_153 | 1/a/1048:1049, 1/a/1191:1195 | Minor groove platform | homologous IL_4LFB_045 IL_24264.1 | |
| IL_5V93_154 | 1/a/1050:1052, 1/a/1187:1190 | Isolated cWH basepair | geometric IL_3R1C_032 NA | |
| IL_5V93_163 | 1/a/1392:1394, 1/a/1494:1497 | No text annotation | geometric IL_5J7L_058 NA | |
| IL_5V93_164 | 1/a/1394:1400, 1/a/1487:1494 | No text annotation | ||
| IL_5V93_165 | 1/a/1400:1402, 1/a/1484:1487 | Stack and bulge | geometric IL_2O3X_001 IL_53541.1 | |
| IL_5V93_166 | 1/a/1405:1407, 1/a/1479:1481 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_5V93_167 | 1/a/1409:1412, 1/a/1474:1477 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_5V93_168 | 1/a/1417:1420, 1/a/1466:1469 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_5V93_169 | 1/a/1423:1428, 1/a/1459:1463 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_5V93_170 | 1/a/1428:1430, 1/a/1457:1459 | Isolated non-canonical cWW pair | geometric IL_3RW6_004 IL_01003.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5V93_173 | No text annotation | ||
| IL_5V93_005 | No text annotation | ||
| IL_5V93_008 | No text annotation | ||
| IL_5V93_174 | No text annotation | ||
| IL_5V93_009 | No text annotation | ||
| IL_5V93_010 | No text annotation | ||
| IL_5V93_175 | No text annotation | ||
| IL_5V93_011 | No text annotation | ||
| IL_5V93_220 | No text annotation | ||
| IL_5V93_012 | No text annotation | ||
| IL_5V93_016 | No text annotation | ||
| IL_5V93_019 | No text annotation | ||
| IL_5V93_182 | No text annotation | ||
| IL_5V93_183 | Tandem non-canonical cWW pairs | ||
| IL_5V93_030 | Isolated non-canonical cWW pair | ||
| IL_5V93_032 | No text annotation | ||
| IL_5V93_037 | Tandem non-canonical cWW pairs | ||
| IL_5V93_187 | Kink-turn | ||
| IL_5V93_038 | No text annotation | ||
| IL_5V93_039 | No text annotation | ||
| IL_5V93_041 | No text annotation | ||
| IL_5V93_188 | Kink-turn | ||
| IL_5V93_045 | Tandem non-canonical cWW pairs | ||
| IL_5V93_046 | No text annotation | ||
| IL_5V93_047 | No text annotation | ||
| IL_5V93_048 | Isolated non-canonical cWW contact | ||
| IL_5V93_049 | No text annotation | ||
| IL_5V93_050 | No text annotation | ||
| IL_5V93_051 | No text annotation | ||
| IL_5V93_053 | No text annotation | ||
| IL_5V93_189 | No text annotation | ||
| IL_5V93_190 | tSH-tHW-tHS | ||
| IL_5V93_055 | No text annotation | ||
| IL_5V93_070 | No text annotation | ||
| IL_5V93_196 | Isolated non-canonical cWW pair | ||
| IL_5V93_197 | No text annotation | ||
| IL_5V93_078 | No text annotation | ||
| IL_5V93_198 | No text annotation | ||
| IL_5V93_199 | Isolated non-canonical cWW pair | ||
| IL_5V93_079 | Tandem non-canonical cWW pairs | ||
| IL_5V93_084 | Major groove platform with extra pair | ||
| IL_5V93_090 | No text annotation | ||
| IL_5V93_202 | No text annotation | ||
| IL_5V93_203 | Tandem non-canonical cWW pairs | ||
| IL_5V93_092 | No text annotation | ||
| IL_5V93_093 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_5V93_205 | No text annotation | ||
| IL_5V93_099 | Tandem non-canonical cWW pairs | ||
| IL_5V93_206 | Partly complementary | ||
| IL_5V93_207 | No text annotation | ||
| IL_5V93_208 | Isolated cWH basepair | ||
| IL_5V93_107 | Tandem non-canonical cWW pairs | ||
| IL_5V93_110 | Multiple bulged bases | ||
| IL_5V93_111 | Minor groove platform with extra cWW | ||
| IL_5V93_112 | Minor groove platform | ||
| IL_5V93_113 | Tandem non-canonical cWW pairs | ||
| IL_5V93_114 | Multiple bulged bases | ||
| IL_5V93_116 | tWH-tWH-tHW-tHW | ||
| IL_5V93_118 | No text annotation | ||
| IL_5V93_119 | C-loop | ||
| IL_5V93_120 | Single bulged U | ||
| IL_5V93_121 | No text annotation | ||
| IL_5V93_122 | No text annotation | ||
| IL_5V93_123 | No text annotation | ||
| IL_5V93_124 | No text annotation | ||
| IL_5V93_210 | Isolated cWH basepair | ||
| IL_5V93_125 | Tandem non-canonical cWW pairs | ||
| IL_5V93_126 | Isolated non-canonical cWW pair | ||
| IL_5V93_127 | SSU/LSU pseudoknot | ||
| IL_5V93_132 | No text annotation | ||
| IL_5V93_133 | Single stack bend | ||
| IL_5V93_135 | Major groove platform | ||
| IL_5V93_211 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_5V93_142 | Isolated non-canonical cWW pair | ||
| IL_5V93_212 | Tandem non-canonical cWW pairs | ||
| IL_5V93_144 | Minor groove platform | ||
| IL_5V93_145 | No text annotation | ||
| IL_5V93_146 | No text annotation | ||
| IL_5V93_147 | No text annotation | ||
| IL_5V93_148 | No text annotation | ||
| IL_5V93_149 | Isolated non-canonical cWW pair | ||
| IL_5V93_150 | Isolated non-canonical cWW pair | ||
| IL_5V93_151 | Single bulged U | ||
| IL_5V93_152 | Tandem non-canonical cWW pairs | ||
| IL_5V93_213 | No text annotation | ||
| IL_5V93_155 | Isolated non-canonical cWW pair | ||
| IL_5V93_156 | No text annotation | ||
| IL_5V93_157 | Minor groove platform | ||
| IL_5V93_158 | No text annotation | ||
| IL_5V93_159 | No text annotation | ||
| IL_5V93_160 | 180 degree turn | ||
| IL_5V93_214 | Double sheared with non-canonical cWW | ||
| IL_5V93_161 | No text annotation | ||
| IL_5V93_162 | No text annotation | ||
| IL_5V93_215 | Tandem non-canonical cWW pairs | ||
| IL_5V93_171 | No text annotation | ||
| IL_5V93_216 | No text annotation | ||
| IL_5V93_172 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5V93_049 | 1/A/30:31, 1/A/563:573, 1/A/584:598 | No text annotation | homologous J3_5J7L_066 NA | |
| J3_5V93_027 | 1/A/32:35, 1/A/534:550, 1/A/557:562 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_5V93_028 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_5V93_050 | 1/A/318:320, 1/A/458:464, 1/A/488:493 | No text annotation | ||
| J3_5V93_031 | 1/A/379:383, 1/A/399:408, 1/A/420:424 | No text annotation | homologous J3_5J7L_068 NA | |
| J3_5V93_002 | 1/A/812:818, 1/A/902:904, 1/A/920:923 | No text annotation | homologous J3_4WF9_002 J3_46658.1 | |
| J3_5V93_003 | 1/A/827:829, 1/A/861:865, 1/A/889:892 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_5V93_034 | 1/A/1429:1434, 1/A/1860:1862, 1/A/1874:1877 | No text annotation | homologous J3_4WF9_004 J3_32852.7 | |
| J3_5V93_052 | 1/A/1437:1440, 1/A/1840:1846, 1/A/1855:1857 | No text annotation | homologous J3_9DFE_011 J3_47341.1 | |
| J3_5V93_007 | 1/A/1475:1481, 1/A/1512:1516, 1/A/1533:1534 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_5V93_008 | 1/A/1547:1553, 1/A/1652:1654, 1/A/1818:1821 | No text annotation | ||
| J3_5V93_036 | 1/A/1663:1667, 1/A/1801:1802, 1/A/1805:1810 | No text annotation | geometric J3_4V9F_017 J3_08594.1 | |
| J3_5V93_037 | 1/A/2326:2330, 1/A/2433:2437, 1/A/2461:2468 | No text annotation | ||
| J3_5V93_038 | 1/A/2533:2537, 1/A/2555:2561, 1/A/2570:2575 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_5V93_012 | 1/A/2755:2758, 1/A/2783:2785, 1/A/2799:2805 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_5V93_053 | 1/A/3048:3051, 1/A/3065:3071, 1/A/3117:3122 | No text annotation | ||
| J3_5V93_014 | 1/B/9:15, 1/B/67:69, 1/B/102:106 | No text annotation | homologous J3_5J7L_049 NA | |
| J3_5V93_015 | 1/a/49:50, 1/a/360:366, 1/a/392:394 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_5V93_041 | 1/a/49:55, 1/a/358:366, 1/a/392:394 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_5V93_016 | 1/a/577:579, 1/a/642:646, 1/a/742:746 | No text annotation | geometric J3_4LFB_015 J3_17385.5 | |
| J3_5V93_017 | 1/a/663:664, 1/a/708:716, 1/a/723:725 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_5V93_018 | 1/a/817:820, 1/a/850:854, 1/a/861:867 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_5V93_054 | 1/a/1050:1059, 1/a/1098:1104, 1/a/1179:1190 | No text annotation | ||
| J3_5V93_022 | 1/a/1054:1059, 1/a/1098:1105, 1/a/1178:1185 | No text annotation | ||
| J4_5V93_013 | 1/A/270:275, 1/A/313:318, 1/A/493:495, 1/A/510:513 | No text annotation | ||
| J4_5V93_002 | 1/A/704:708, 1/A/727:742, 1/A/754:761, 1/A/778:785 | No text annotation | ||
| J4_5V93_003 | 1/A/1401:1407, 1/A/1425:1426, 1/A/1880:1883, 1/A/2247:2248 | No text annotation | homologous J4_7A0S_004 J4_64571.6 | |
| J4_5V93_004 | 1/A/1441:1445, 1/A/1469:1474, 1/A/1535:1537, 1/A/1831:1839 | No text annotation | ||
| J4_5V93_005 | 1/A/1681:1684, 1/A/1703:1705, 1/A/1764:1768, 1/A/1779:1785 | No text annotation | ||
| J4_5V93_014 | 1/A/2004:2010, 1/A/2022:2026, 1/A/2061:2064, 1/A/2213:2220 | No text annotation | ||
| J4_5V93_007 | 1/A/2067:2069, 1/A/2143:2144, 1/A/2162:2171, 1/A/2205:2210 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_5V93_015 | 1/A/2523:2527, 1/A/2581:2585, 1/A/2608:2610, 1/A/2619:2621 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_5V93_009 | 1/A/2880:2884, 1/A/2912:2914, 1/A/2970:2973, 1/A/3007:3010 | No text annotation | ||
| J4_5V93_010 | 1/a/110:118, 1/a/237:239, 1/a/285:288, 1/a/310:311 | No text annotation | ||
| J4_5V93_012 | 1/a/566:568, 1/a/755:760, 1/a/801:812, 1/a/872:873 | No text annotation | homologous J4_5J7L_003 NA | |
| J5_5V93_001 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/150:152, 1/A/178:180 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_5V93_002 | 1/A/270:275, 1/A/313:320, 1/A/458:466, 1/A/486:496, 1/A/509:513 | No text annotation | ||
| J5_5V93_003 | 1/A/619:621, 1/A/662:668, 1/A/677:681, 1/A/1392:1393, 1/A/2255:2256 | No text annotation | ||
| J5_5V93_004 | 1/A/686:691, 1/A/797:800, 1/A/938:941, 1/A/1327:1328, 1/A/1381:1387 | No text annotation | homologous J5_4WF9_004 J5_74302.6 | |
| J5_5V93_005 | 1/A/1898:1917, 1/A/1941:1942, 1/A/1985:1986, 1/A/1990:1999, 1/A/2225:2235 | No text annotation | ||
| J5_5V93_006 | 1/A/1904:1917, 1/A/1941:1942, 1/A/1985:1986, 1/A/1990:1999, 1/A/2225:2231 | No text annotation | ||
| J5_5V93_007 | 1/A/2295:2302, 1/A/2684:2691, 1/A/2738:2746, 1/A/2818:2826, 1/A/2844:2849 | No text annotation | ||
| J5_5V93_008 | 1/A/2311:2324, 1/A/2470:2497, 1/A/2519:2522, 1/A/2622:2633, 1/A/2659:2673 | No text annotation | ||
| J5_5V93_009 | 1/a/39:42, 1/a/402:405, 1/a/435:439, 1/a/488:491, 1/a/536:539 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_5V93_010 | 1/a/61:64, 1/a/101:108, 1/a/313:315, 1/a/336:338, 1/a/349:353 | No text annotation | homologous J5_6CZR_021 NA | |
| J6_5V93_001 | 1/A/45:46, 1/A/181:185, 1/A/216:226, 1/A/233:237, 1/A/264:268, 1/A/515:522 | No text annotation | ||
| J7_5V93_002 | 1/A/945:951, 1/A/964:965, 1/A/1071:1074, 1/A/1100:1105, 1/A/1116:1120, 1/A/1293:1294, 1/A/1317:1323 | No text annotation | ||
| J8_5V93_001 | 1/A/7:15, 1/A/613:619, 1/A/2256:2261, 1/A/2278:2281, 1/A/2863:2868, 1/A/3026:3029, 1/A/3041:3046, 1/A/3124:3130 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5V93_026 | No text annotation | ||
| J3_5V93_001 | No text annotation | ||
| J3_5V93_029 | No text annotation | ||
| J3_5V93_051 | No text annotation | ||
| J3_5V93_030 | No text annotation | ||
| J3_5V93_032 | No text annotation | ||
| J3_5V93_033 | No text annotation | ||
| J3_5V93_004 | No text annotation | ||
| J3_5V93_005 | No text annotation | ||
| J3_5V93_006 | No text annotation | ||
| J3_5V93_035 | No text annotation | ||
| J3_5V93_009 | No text annotation | ||
| J3_5V93_010 | No text annotation | ||
| J3_5V93_011 | No text annotation | ||
| J3_5V93_039 | No text annotation | ||
| J3_5V93_013 | No text annotation | ||
| J3_5V93_040 | No text annotation | ||
| J3_5V93_042 | No text annotation | ||
| J3_5V93_019 | No text annotation | ||
| J3_5V93_043 | No text annotation | ||
| J3_5V93_020 | No text annotation | ||
| J3_5V93_021 | No text annotation | ||
| J3_5V93_044 | No text annotation | ||
| J3_5V93_045 | No text annotation | ||
| J3_5V93_046 | No text annotation | ||
| J3_5V93_023 | No text annotation | ||
| J3_5V93_047 | No text annotation | ||
| J3_5V93_048 | No text annotation | ||
| J3_5V93_024 | No text annotation | ||
| J3_5V93_055 | No text annotation | ||
| J3_5V93_025 | No text annotation | ||
| J4_5V93_001 | No text annotation | ||
| J4_5V93_006 | No text annotation | ||
| J4_5V93_008 | No text annotation | ||
| J4_5V93_011 | No text annotation | ||
| J4_5V93_016 | No text annotation | ||
| J7_5V93_001 | No text annotation |
Coloring options: