4V8Y Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/B2/7:17 | homologous HL_4V88_186 | NA HL_67265.4* | ||
1/B2/70:81 | homologous HL_4V88_187 | NA HL_07268.1* | ||
1/B2/154:160 | Other HL homologous HL_4V88_188 | NA HL_43074.18* | ||
1/B2/190:195 | homologous HL_4V88_189 | NA HL_39228.1* | ||
1/B2/230:235 | geometric HL_6CZR_082 | NA HL_79299.11* | ||
1/B2/243:250 | T-loop with 1 bulged base homologous HL_4V88_191 | NA HL_68493.6* | ||
1/B2/276:279 | geometric HL_6JOO_002 | NA HL_69353.7* | ||
1/B2/330:338 | homologous HL_4V88_193 | NA HL_93727.5* | ||
1/B2/368:373 | homologous HL_4V88_194 | NA HL_18785.1* | ||
1/B2/393:404 | homologous HL_4V88_195 | NA HL_22443.1* | ||
1/B2/414:419 | UNCG homologous HL_4V88_196 | NA HL_79299.11* | ||
1/B2/450:456 | homologous HL_4V88_197 | NA HL_50374.1* | ||
1/B2/487:500 | NA | NA | ||
1/B2/520:532 | geometric HL_4V88_199 | NA HL_17086.2* | ||
1/B2/569:574 | Other HL homologous HL_4V88_200 | NA HL_43074.18* | ||
1/B2/703:735 | NA | NA | ||
1/B2/764:772 | homologous HL_4V88_203 | NA HL_72066.1* | ||
1/B2/777:783 | NA | NA | ||
1/B2/829:843 | homologous HL_4V88_205 | NA HL_03603.1* | ||
1/B2/900:909 | homologous HL_4V88_206 | NA HL_87219.4* | ||
1/B2/937:942 | Other HL homologous HL_4V88_207 | NA HL_43074.18* | ||
1/B2/997:1007 | homologous HL_4V88_208 | NA HL_87219.4* | ||
1/B2/1054:1065 | homologous HL_5TBW_212 | NA | ||
1/B2/1084:1089 | Other HL homologous HL_4V88_210 | NA HL_43074.18* | ||
1/B2/1121:1126 | GNRA homologous HL_4V88_211 | NA HL_43074.18* | ||
1/B2/1188:1197 | homologous HL_4V88_212 | NA HL_96854.1* | ||
1/B2/1238:1247 | homologous HL_4V88_213 | NA HL_30819.1* | ||
1/B2/1296:1301 | GNRA homologous HL_4V88_214 | NA HL_43074.18* | ||
1/B2/1309:1316 | homologous HL_4V88_215 | NA HL_54035.7* | ||
1/B2/1359:1364 | homologous HL_4V88_216 | NA HL_82678.2* | ||
1/B2/1396:1402 | homologous HL_4V88_217 | NA HL_67216.5* | ||
1/B2/1501:1506 | GNRA homologous HL_4V88_218 | NA HL_43074.18* | ||
1/B2/1550:1561 | homologous HL_4V88_219 | NA HL_32458.3* | ||
1/B2/1594:1602 | homologous HL_4V88_220 | NA HL_01181.4* | ||
1/B2/1690:1711 | NA | NA | ||
1/B2/1778:1783 | Other HL homologous HL_4V88_222 | NA HL_43074.18* | ||
1/B5/38:45 | geometric HL_5TBW_001 | NA HL_23481.5* | ||
1/B5/69:74 | homologous HL_5TBW_114 | NA | ||
1/B5/90:96 | homologous HL_5TBW_115 | NA | ||
1/B5/132:136 | homologous HL_5TBW_116 | NA | ||
1/B5/194:201 | homologous HL_5TBW_117 | NA | ||
1/B5/208:212 | homologous HL_5TBW_118 | NA | ||
1/B5/216:224 | homologous HL_5TBW_119 | NA | ||
1/B5/278:287 | homologous HL_5TBW_120 | NA | ||
1/B5/303:312 | homologous HL_5TBW_121 | NA | ||
1/B5/357:362 | homologous HL_5TBW_122 | NA | ||
1/B5/382:387 | homologous HL_5TBW_123 | NA | ||
1/B5/543:548 | geometric HL_2IZN_001 | NA HL_16568.1* | ||
1/B5/599:604 | homologous HL_5TBW_125 | NA | ||
1/B5/640:649 | homologous HL_5TBW_126 | NA | ||
1/B5/686:694 | homologous HL_5TBW_127 | NA | ||
1/B5/707:712 | homologous HL_5TBW_128 | NA | ||
1/B5/732:737 | homologous HL_5TBW_129 | NA | ||
1/B5/763:768 | homologous HL_5TBW_130 | NA | ||
1/B5/844:849 | homologous HL_5TBW_131 | NA | ||
1/B5/876:885 | homologous HL_5TBW_132 | NA | ||
1/B5/910:918 | homologous HL_5TBW_133 | NA | ||
1/B5/958:963 | homologous HL_5TBW_134 | NA | ||
1/B5/1023:1029 | NA | NA | ||
1/B5/1076:1083 | geometric HL_5TBW_024 | NA HL_54035.7* | ||
1/B5/1126:1132 | homologous HL_5TBW_137 | NA | ||
1/B5/1148:1155 | homologous HL_5TBW_138 | NA | ||
1/B5/1239:1249 | NA | NA | ||
1/B5/1262:1277 | NA | NA | ||
1/B5/1347:1357 | homologous HL_5TBW_141 | NA | ||
1/B5/1403:1408 | homologous HL_5TBW_142 | NA | ||
1/B5/1462:1470 | homologous HL_5TBW_143 | NA | ||
1/B5/1506:1512 | homologous HL_5TBW_144 | NA | ||
1/B5/1544:1549 | homologous HL_5TBW_145 | NA | ||
1/B5/1562:1577 | NA | NA | ||
1/B5/1599:1608 | homologous HL_5TBW_147 | NA | ||
1/B5/1634:1639 | homologous HL_5TBW_148 | NA | ||
1/B5/1680:1688 | homologous HL_5TBW_149 | NA | ||
1/B5/1719:1725 | homologous HL_5TBW_150 | NA | ||
1/B5/1760:1765 | GNRA geometric HL_4QLM_001 | NA HL_43074.18* | ||
1/B5/1792:1796 | homologous HL_5TBW_152 | NA | ||
1/B5/1844:1851 | homologous HL_5TBW_153 | NA | ||
1/B5/1862:1868 | homologous HL_5TBW_154 | NA | ||
1/B5/1923:1928 | homologous HL_5TBW_155 | NA | ||
1/B5/2110:2114 | homologous HL_5TBW_157 | NA | ||
1/B5/2135:2145 | homologous HL_5TBW_158 | NA | ||
1/B5/2164:2170 | homologous HL_5TBW_159 | NA | ||
1/B5/2220:2225 | homologous HL_5TBW_160 | NA | ||
1/B5/2253:2263 | homologous HL_5TBW_161 | NA | ||
1/B5/2292:2300 | homologous HL_5TBW_162 | NA | ||
1/B5/2369:2378 | homologous HL_5TBW_163 | NA | ||
1/B5/2534:2545 | NA | NA | ||
1/B5/2568:2573 | geometric HL_2Y8W_001 | NA HL_69459.1* | ||
1/B5/2616:2624 | homologous HL_5TBW_167 | NA | ||
1/B5/2633:2645 | homologous HL_5TBW_168 | NA | ||
1/B5/2673:2681 | homologous HL_5TBW_169 | NA | ||
1/B5/2693:2700 | homologous HL_5TBW_170 | NA | ||
1/B5/2724:2732 | homologous HL_5TBW_171 | NA | ||
1/B5/2744:2749 | homologous HL_5TBW_172 | NA | ||
1/B5/2776:2784 | homologous HL_5TBW_173 | NA | ||
1/B5/2840:2848 | homologous HL_5TBW_174 | NA | ||
1/B5/2897:2904 | homologous HL_5TBW_175 | NA | ||
1/B5/2920:2926 | homologous HL_5TBW_176 | NA | ||
1/B5/2963:2968 | homologous HL_5TBW_177 | NA | ||
1/B5/3025:3030 | GNRA geometric HL_5TBW_065 | NA HL_43074.18* | ||
1/B5/3068:3073 | homologous HL_5TBW_179 | NA | ||
1/B5/3110:3124 | homologous HL_5TBW_180 | NA | ||
1/B5/3194:3197 | homologous HL_5TBW_181 | NA | ||
1/B5/3240:3247 | homologous HL_5TBW_182 | NA | ||
1/B5/3303:3311 | geometric HL_5TBW_070 | NA HL_05018.6* | ||
1/B5/3350:3353 | geometric HL_4V88_192 | NA HL_69353.7* | ||
1/B7/36:41 | geometric HL_5TBW_185 | NA HL_02733.5* | ||
1/B7/88:93 | GNRA homologous HL_5TBW_186 | NA HL_43074.18* | ||
1/B8/69:89 | NA | NA | ||
1/B8/108:114 | homologous HL_5TBW_075 | NA HL_06569.2* | ||
1/B8/124:129 | homologous HL_5TBW_076 | NA HL_60357.1* | ||
1/CN/2164:2169 | Other HL geometric HL_2CZJ_007 | NA HL_79299.11* | ||
1/CW/31:39 | NA | NA | ||
1/CW/53:61 | NA | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_4V8Y_080 | NA | ||
HL_4V8Y_088 | NA | ||
HL_4V8Y_115 | NA |
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/B2/24:26, 1/B2/600:601 | Single bulged C homologous IL_4V88_384 | NA IL_61258.10* | ||
1/B2/35:37, 1/B2/471:473 | UC cWW homologous IL_4V88_385 | NA IL_01312.13* | ||
1/B2/37:41, 1/B2/466:471 | geometric IL_4V88_386 | NA IL_53318.1* | ||
1/B2/42:48, 1/B2/431:433 | homologous IL_4V88_387 | NA IL_34626.4* | ||
1/B2/50:52, 1/B2/428:429 | Minor groove platform homologous IL_4V88_388 | NA IL_06437.11* | ||
1/B2/58:63, 1/B2/87:89 | homologous IL_4V88_389 | NA IL_96451.1* | ||
1/B2/64:69, 1/B2/82:86 | homologous IL_4V88_390 | NA IL_59423.1* | ||
1/B2/109:112, 1/B2/302:305 | Tandem non-canonical cWW pairs homologous IL_4V88_391 | NA IL_85877.10* | ||
1/B2/113:116, 1/B2/300:301 | Multiple bulged bases homologous IL_4V88_392 | NA IL_13730.12* | ||
1/B2/117:122, 1/B2/295:299 | homologous IL_4V88_393 | NA IL_76386.1* | ||
1/B2/143:149, 1/B2/165:172 | tWH-tWH-tHW-tHW homologous IL_4V88_394 | NA IL_92440.5* | ||
1/B2/150:152, 1/B2/162:164 | Isolated cWH basepair geometric IL_6RA4_002 | NA IL_42589.6* | ||
1/B2/186:189, 1/B2/196:199 | Double sheared homologous IL_4V88_396 | NA IL_09705.7* | ||
1/B2/204:206, 1/B2/259:263 | Major groove platform with extra cWW geometric IL_4V88_397 | NA IL_95485.6* | ||
1/B2/206:208, 1/B2/257:259 | homologous IL_4V88_398 | NA IL_01312.13* | ||
1/B2/265:267, 1/B2/288:289 | Single bulged A homologous IL_4V88_399 | NA IL_80007.16* | ||
1/B2/270:273, 1/B2/283:285 | homologous IL_4V88_400 | NA IL_05922.1* | ||
1/B2/275:276, 1/B2/279:281 | Single bulged U homologous IL_4V88_401 | NA IL_83039.11* | ||
1/B2/311:316, 1/B2/348:355 | Kink-turn with non-sequential stacking homologous IL_4V88_402 | NA IL_29549.9* | ||
1/B2/318:323, 1/B2/345:346 | homologous IL_4V88_403 | NA IL_55658.1* | ||
1/B2/363:365, 1/B2/376:381 | homologous IL_4V88_404 | NA IL_46732.1* | ||
1/B2/389:391, 1/B2/406:408 | Isolated cWH basepair homologous IL_4V88_405 | NA IL_42589.6* | ||
1/B2/411:413, 1/B2/420:422 | Isolated near basepair homologous IL_4V88_406 | NA IL_01312.13* | ||
1/B2/439:441, 1/B2/463:464 | Single bulged U homologous IL_4V88_407 | NA IL_83039.11* | ||
1/B2/443:448, 1/B2/458:461 | C-loop with extra cWW pair homologous IL_4V88_408 | NA IL_51590.1* | ||
1/B2/480:485, 1/B2/502:508 | NA | NA | ||
1/B2/517:520, 1/B2/532:535 | Double sheared geometric IL_4LFB_060 | NA IL_09705.7* | ||
1/B2/550:557, 1/B2/587:588 | SSU/LSU pseudoknot geometric IL_4V88_413 | NA IL_15861.6* | ||
1/B2/557:559, 1/B2/586:587 | Single bulged U homologous IL_4V88_414 | NA IL_83039.11* | ||
1/B2/562:568, 1/B2/575:583 | NA | NA | ||
1/B2/616:622, 1/B2/1104:1105 | homologous IL_4V88_416 | NA IL_12418.1* | ||
1/B2/624:626, 1/B2/973:975 | homologous IL_4V88_417 | NA IL_01312.13* | ||
1/B2/627:631, 1/B2/968:972 | tSH-tHW-tHS homologous IL_4V88_418 | NA IL_39521.5* | ||
1/B2/646:648, 1/B2/686:688 | homologous IL_4V88_419 | NA IL_01312.13* | ||
1/B2/652:658, 1/B2/676:682 | NA | NA | ||
1/B2/746:747, 1/B2/802:805 | Major groove minor groove platform; mini C-loop homologous IL_4V88_423 | NA IL_09061.4* | ||
1/B2/748:750, 1/B2/799:801 | homologous IL_4V88_424 | NA IL_01312.13* | ||
1/B2/751:760, 1/B2/790:798 | NA | NA | ||
1/B2/817:824, 1/B2/848:854 | NA | NA | ||
1/B2/825:827, 1/B2/845:847 | Isolated cWH basepair geometric IL_4KQ0_005 | NA IL_42589.6* | ||
1/B2/865:866, 1/B2/962:965 | Major groove platform; stack outside cWW homologous IL_4V88_428 | NA IL_70995.6* | ||
1/B2/867:870, 1/B2/957:961 | Tandem non-canonical cWW pairs homologous IL_4V88_429 | NA IL_85877.10* | ||
1/B2/871:874, 1/B2/953:956 | Tandem non-canonical cWW pairs homologous IL_4V88_430 | NA IL_85877.10* | ||
1/B2/874:878, 1/B2/950:953 | Tandem non-canonical cWW pairs geometric IL_4V88_431 | NA IL_85877.10* | ||
1/B2/885:888, 1/B2/924:927 | Tandem non-canonical cWW pairs homologous IL_4V88_432 | NA IL_85877.10* | ||
1/B2/893:899, 1/B2/910:919 | homologous IL_5TBW_430 | NA | ||
1/B2/985:990, 1/B2/1014:1016 | Other IL geometric IL_4V88_435 | NA IL_51590.1* | ||
1/B2/990:994, 1/B2/1010:1014 | tSH-tHW-tHS homologous IL_4V88_436 | NA IL_39521.5* | ||
1/B2/1034:1036, 1/B2/1095:1101 | homologous IL_4V88_437 | NA IL_19557.1* | ||
1/B2/1041:1044, 1/B2/1074:1077 | Tandem non-canonical cWW pairs homologous IL_4V88_438 | NA IL_85877.10* | ||
1/B2/1051:1053, 1/B2/1066:1067 | Single bulged U homologous IL_4V88_439 | NA IL_83039.11* | ||
1/B2/1111:1118, 1/B2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge homologous IL_4V88_440 | NA IL_24606.1* | ||
1/B2/1146:1147, 1/B2/1630:1632 | Single bulged A homologous IL_4V88_441 | NA IL_80007.16* | ||
1/B2/1149:1151, 1/B2/1627:1628 | Single bulged G homologous IL_4V88_442 | NA IL_59137.10* | ||
1/B2/1157:1160, 1/B2/1617:1621 | C-loop homologous IL_4V88_443 | NA IL_63596.4* | ||
1/B2/1173:1175, 1/B2/1464:1466 | homologous IL_4V88_444 | NA IL_01312.13* | ||
1/B2/1178:1179, 1/B2/1459:1461 | Minor groove platform homologous IL_4V88_445 | NA IL_06437.11* | ||
1/B2/1213:1215, 1/B2/1448:1450 | geometric IL_4V88_446 | NA IL_01312.13* | ||
1/B2/1223:1230, 1/B2/1257:1260 | NA | NA | ||
1/B2/1230:1233, 1/B2/1252:1257 | NA | NA | ||
1/B2/1234:1236, 1/B2/1249:1251 | homologous IL_4V88_448 | NA IL_01312.13* | ||
1/B2/1268:1270, 1/B2/1440:1441 | Single bulged U homologous IL_4V88_449 | NA IL_83039.11* | ||
1/B2/1272:1278, 1/B2/1430:1438 | NA | NA | ||
1/B2/1280:1281, 1/B2/1426:1428 | Single bulged A homologous IL_4V88_452 | NA IL_80007.16* | ||
1/B2/1290:1292, 1/B2/1323:1325 | Isolated cWH basepair homologous IL_4V88_453 | NA IL_42589.6* | ||
1/B2/1306:1308, 1/B2/1317:1318 | Minor groove platform geometric IL_5TBW_039 | NA IL_06437.11* | ||
1/B2/1339:1342, 1/B2/1383:1385 | homologous IL_4V88_455 | NA IL_01312.13* | ||
1/B2/1345:1348, 1/B2/1377:1380 | Minor groove platform homologous IL_4V88_456 | NA IL_69507.1* | ||
1/B2/1352:1354, 1/B2/1369:1373 | homologous IL_4V88_457 | NA IL_01312.13* | ||
1/B2/1389:1391, 1/B2/1407:1412 | Major groove platform; stack outside cWW geometric IL_4V88_458 | NA IL_60171.1* | ||
1/B2/1480:1487, 1/B2/1519:1527 | homologous IL_4V88_459 | NA IL_69573.1* | ||
1/B2/1488:1494, 1/B2/1513:1518 | homologous IL_4V88_460 | NA IL_75461.2* | ||
1/B2/1495:1498, 1/B2/1509:1512 | Tandem non-canonical cWW pairs homologous IL_4V88_461 | NA IL_85877.10* | ||
1/B2/1540:1545, 1/B2/1566:1571 | geometric IL_4V88_462 | NA IL_19954.1* | ||
1/B2/1636:1638, 1/B2/1764:1767 | geometric IL_4V88_463 | NA IL_36143.2* | ||
1/B2/1638:1641, 1/B2/1760:1764 | homologous IL_4V88_464 | NA IL_59281.1* | ||
1/B2/1642:1644, 1/B2/1757:1759 | homologous IL_4V88_465 | NA IL_01312.13* | ||
1/B2/1644:1647, 1/B2/1753:1757 | Non canonical cWW and near pair geometric IL_4V88_466 | NA IL_85877.10* | ||
1/B2/1650:1652, 1/B2/1748:1750 | AA cWW homologous IL_4V88_467 | NA IL_01312.13* | ||
1/B2/1653:1656, 1/B2/1744:1747 | Double sheared homologous IL_4V88_468 | NA IL_09705.7* | ||
1/B2/1656:1658, 1/B2/1743:1744 | Single bulged U geometric IL_6CZR_156 | NA IL_83039.11* | ||
1/B2/1665:1667, 1/B2/1734:1736 | homologous IL_4V88_470 | NA IL_01312.13* | ||
1/B2/1669:1672, 1/B2/1729:1732 | Double sheared homologous IL_4V88_471 | NA IL_09705.7* | ||
1/B2/1672:1674, 1/B2/1727:1729 | geometric IL_4V88_472 | NA IL_01312.13* | ||
1/B2/1675:1678, 1/B2/1723:1726 | Tandem non-canonical cWW pairs homologous IL_4V88_473 | NA IL_85877.10* | ||
1/B2/1678:1682, 1/B2/1719:1723 | Triple sheared geometric IL_4V88_474 | NA IL_56467.6* | ||
1/B2/1683:1685, 1/B2/1716:1718 | homologous IL_4V88_475 | NA IL_01312.13* | ||
1/B2/1687:1690, 1/B2/1711:1714 | Tandem non-canonical cWW pairs geometric IL_1JID_002 | NA IL_85877.10* | ||
1/B5/7:8, 1/B8/150:152 | Single bulged C homologous IL_5TBW_002 | NA IL_61258.10* | ||
1/B5/13:15, 1/B8/144:145 | Single bulged U homologous IL_5TBW_003 | NA IL_83039.11* | ||
1/B5/27:28, 1/B5/56:58 | homologous IL_5TBW_240 | NA | ||
1/B5/31:38, 1/B5/45:53 | homologous IL_5TBW_241 | NA | ||
1/B5/82:89, 1/B5/97:103 | homologous IL_5TBW_242 | NA | ||
1/B5/123:124, 1/B5/144:149 | geometric IL_5TBW_007 | NA IL_19724.1* | ||
1/B5/125:127, 1/B5/141:143 | homologous IL_5TBW_244 | NA | ||
1/B5/163:165, 1/B5/257:258 | homologous IL_5TBW_245 | NA | ||
1/B5/169:174, 1/B5/244:253 | NA | NA | ||
1/B5/177:179, 1/B5/237:241 | homologous IL_5TBW_247 | NA | ||
1/B5/189:191, 1/B5/204:205 | homologous IL_5TBW_248 | NA | ||
1/B5/337:339, 1/B8/25:26 | Single bulged A homologous IL_5TBW_013 | NA IL_80007.16* | ||
1/B5/376:379, 1/B5/390:403 | homologous IL_5TBW_250 | NA | ||
1/B5/404:410, 1/B8/13:19 | Triple sheared with non-canonical cWW homologous IL_5TBW_015 | NA IL_66414.5* | ||
1/B5/429:431, 1/B5/628:630 | homologous IL_5TBW_252 | NA | ||
1/B5/512:513, 1/B5/577:579 | homologous IL_5TBW_254 | NA | ||
1/B5/517:525, 1/B5/567:573 | homologous IL_5TBW_255 | NA | ||
1/B5/531:538, 1/B5/553:561 | homologous IL_5TBW_256 | NA | ||
1/B5/668:670, 1/B5/792:794 | homologous IL_5TBW_257 | NA | ||
1/B5/680:684, 1/B5/696:700 | homologous IL_5TBW_258 | NA | ||
1/B5/725:728, 1/B5/741:745 | homologous IL_5TBW_259 | NA | ||
1/B5/752:753, 1/B5/779:781 | homologous IL_5TBW_260 | NA | ||
1/B5/755:756, 1/B5/775:777 | homologous IL_5TBW_261 | NA | ||
1/B5/758:763, 1/B5/768:773 | geometric IL_5TBW_026 | NA IL_19954.1* | ||
1/B5/803:805, 1/B5/938:940 | geometric IL_5TBW_027 | NA IL_01312.13* | ||
1/B5/805:809, 1/B5/931:938 | homologous IL_5TBW_264 | NA | ||
1/B5/828:829, 1/B5/895:897 | Single bulged A geometric IL_5J7L_261 | NA IL_80007.16* | ||
1/B5/833:834, 1/B5/859:861 | Single bulged G geometric IL_5TBW_029 | NA IL_99645.1* | ||
1/B5/834:838, 1/B5/855:859 | homologous IL_5TBW_266 | NA | ||
1/B5/869:872, 1/B5/888:890 | homologous IL_5TBW_267 | NA | ||
1/B5/873:875, 1/B5/886:887 | homologous IL_5TBW_268 | NA | ||
1/B5/907:909, 1/B5/919:923 | Multiple bulged bases geometric IL_5TBW_033 | NA IL_90991.5* | ||
1/B5/954:956, 1/B5/965:967 | homologous IL_5TBW_270 | NA | ||
1/B5/969:970, 1/B5/1111:1113 | homologous IL_5TBW_271 | NA | ||
1/B5/977:982, 1/B5/1101:1104 | NA | NA | ||
1/B5/983:985, 1/B5/1099:1100 | homologous IL_5TBW_273 | NA | ||
1/B5/991:997, 1/B5/1052:1058 | homologous IL_5TBW_274 | NA | ||
1/B5/997:998, 1/B5/1050:1052 | Minor groove platform geometric IL_5TBW_039 | NA IL_06437.11* | ||
1/B5/999:1004, 1/B5/1046:1049 | homologous IL_5TBW_276 | NA | ||
1/B5/1006:1009, 1/B5/1041:1044 | homologous IL_5TBW_277 | NA | ||
1/B5/1009:1011, 1/B5/1039:1041 | geometric IL_5TBW_042 | NA IL_01312.13* | ||
1/B5/1013:1015, 1/B5/1035:1037 | geometric IL_4KR9_002 | NA IL_01312.13* | ||
1/B5/1015:1018, 1/B5/1034:1035 | Multiple bulged bases geometric IL_4LFB_005 | NA IL_13730.12* | ||
1/B5/1018:1020, 1/B5/1032:1034 | geometric IL_5UNE_004 | NA IL_01312.13* | ||
1/B5/1069:1071, 1/B5/1087:1089 | homologous IL_5TBW_280 | NA | ||
1/B5/1074:1076, 1/B5/1083:1084 | homologous IL_5TBW_281 | NA | ||
1/B5/1120:1122, 1/B5/1136:1138 | homologous IL_5TBW_282 | NA | ||
1/B5/1123:1125, 1/B5/1133:1135 | homologous IL_5TBW_283 | NA | ||
1/B5/1167:1171, 1/B5/1328:1332 | homologous IL_5TBW_284 | NA | ||
1/B5/1173:1180, 1/B5/1325:1326 | SSU/LSU pseudoknot geometric IL_5TBW_049 | NA IL_15861.6* | ||
1/B5/1180:1182, 1/B5/1324:1325 | homologous IL_5TBW_286 | NA | ||
1/B5/1187:1194, 1/B5/1314:1319 | homologous IL_5TBW_287 | NA | ||
1/B5/1194:1205, 1/B5/1299:1314 | geometric IL_5TBW_052 | NA IL_94878.1* | ||
1/B5/1207:1209, 1/B5/1296:1297 | homologous IL_5TBW_289 | NA | ||
1/B5/1234:1238, 1/B5/1250:1254 | homologous IL_5TBW_291 | NA | ||
1/B5/1376:1378, 1/B5/1428:1431 | homologous IL_5TBW_293 | NA | ||
1/B5/1385:1387, 1/B5/1420:1421 | homologous IL_5TBW_294 | NA | ||
1/B5/1388:1395, 1/B5/1415:1419 | homologous IL_5TBW_295 | NA | ||
1/B5/1398:1400, 1/B5/1411:1412 | homologous IL_5TBW_296 | NA | ||
1/B5/1444:1450, 1/B5/2354:2359 | homologous IL_5TBW_297 | NA | ||
1/B5/1492:1495, 1/B5/1835:1836 | Major groove platform; stack outside cWW geometric IL_4V9F_050 | NA IL_70995.6* | ||
1/B5/1500:1505, 1/B5/1513:1516 | homologous IL_5TBW_298 | NA | ||
1/B5/1532:1536, 1/B5/1585:1590 | homologous IL_5TBW_299 | NA | ||
1/B5/1618:1621, 1/B5/1824:1826 | homologous IL_5TBW_300 | NA | ||
1/B5/1623:1625, 1/B5/1818:1822 | Isolated non-canonical cWW with bulges geometric IL_5TBW_145 | NA IL_55456.1* | ||
1/B5/1625:1627, 1/B5/1816:1818 | geometric IL_7A0S_031 | NA IL_01312.13* | ||
1/B5/1627:1631, 1/B5/1811:1816 | homologous IL_5TBW_302 | NA | ||
1/B5/1645:1649, 1/B5/1806:1810 | homologous IL_5TBW_303 | NA | ||
1/B5/1661:1663, 1/B5/1786:1788 | homologous IL_5TBW_304 | NA | ||
1/B5/1669:1670, 1/B5/1778:1780 | Single bulged C geometric IL_5TBW_069 | NA IL_61258.10* | ||
1/B5/1670:1671, 1/B5/1776:1778 | homologous IL_5TBW_306 | NA | ||
1/B5/1694:1698, 1/B5/1747:1752 | homologous IL_5TBW_307 | NA | ||
1/B5/1702:1707, 1/B5/1737:1743 | homologous IL_5TBW_308 | NA | ||
1/B5/1711:1717, 1/B5/1727:1733 | homologous IL_5TBW_309 | NA | ||
1/B5/1883:1889, 1/B5/2346:2349 | homologous IL_5TBW_310 | NA | ||
1/B5/1895:1897, 1/B5/2338:2340 | homologous IL_5TBW_311 | NA | ||
1/B5/1898:1901, 1/B5/2336:2337 | Major groove platform; stack outside cWW geometric IL_5TBW_076 | NA IL_80663.10* | ||
1/B5/1901:1906, 1/B5/2333:2336 | homologous IL_5TBW_313 | NA | ||
1/B5/1918:1923, 1/B5/1928:1934 | tSH-tSH-tHH-tHS geometric IL_5TBW_078 | NA IL_66584.5* | ||
1/B5/1940:1942, 1/B5/2106:2108 | homologous IL_5TBW_315 | NA | ||
1/B5/1947:1948, 1/B5/2098:2101 | homologous IL_5TBW_316 | NA | ||
1/B5/2128:2129, 1/B5/2323:2325 | homologous IL_5TBW_318 | NA | ||
1/B5/2156:2161, 1/B5/2173:2180 | homologous IL_5TBW_319 | NA | ||
1/B5/2196:2199, 1/B5/2245:2246 | homologous IL_5TBW_320 | NA | ||
1/B5/2200:2201, 1/B5/2241:2244 | homologous IL_5TBW_321 | NA | ||
1/B5/2204:2206, 1/B5/2237:2238 | Single bulged U geometric IL_5TBW_134 | NA IL_83039.11* | ||
1/B5/2276:2277, 1/B5/2307:2310 | homologous IL_5TBW_325 | NA | ||
1/B5/2277:2288, 1/B5/2304:2307 | geometric IL_5TBW_090 | NA IL_45481.1* | ||
1/B5/2391:2394, 1/B5/2986:2988 | homologous IL_5TBW_327 | NA | ||
1/B5/2396:2398, 1/B5/2981:2984 | homologous IL_5TBW_328 | NA | ||
1/B5/2409:2411, 1/B5/2811:2812 | homologous IL_5TBW_329 | NA | ||
1/B5/2412:2413, 1/B5/2807:2810 | homologous IL_5TBW_330 | NA | ||
1/B5/2423:2425, 1/B5/2604:2607 | homologous IL_5TBW_331 | NA | ||
1/B5/2520:2526, 1/B5/2584:2587 | homologous IL_5TBW_332 | NA | ||
1/B5/2614:2615, 1/B5/2625:2627 | homologous IL_5TBW_333 | NA | ||
1/B5/2666:2668, 1/B5/2686:2690 | Isolated tHS basepair with bulges geometric IL_5TBW_099 | NA IL_38958.6* | ||
1/B5/2714:2716, 1/B5/2740:2741 | Single bulged A geometric IL_5WWT_001 | NA IL_80007.16* | ||
1/B5/2718:2721, 1/B5/2735:2738 | homologous IL_5TBW_335 | NA | ||
1/B5/2770:2773, 1/B5/2787:2788 | homologous IL_5TBW_336 | NA | ||
1/B5/2823:2824, 1/B5/2865:2867 | Major groove platform geometric IL_5TBW_102 | NA IL_80663.10* | ||
1/B5/2824:2826, 1/B5/2863:2865 | homologous IL_5TBW_338 | NA | ||
1/B5/2826:2828, 1/B5/2862:2863 | Major groove platform geometric IL_4V9F_083 | NA IL_95601.1* | ||
1/B5/2828:2830, 1/B5/2858:2862 | homologous IL_5TBW_340 | NA | ||
1/B5/2835:2839, 1/B5/2849:2853 | homologous IL_5TBW_341 | NA | ||
1/B5/2876:2877, 1/B5/2949:2951 | homologous IL_5TBW_342 | NA | ||
1/B5/2879:2881, 1/B5/2943:2947 | homologous IL_5TBW_343 | NA | ||
1/B5/2881:2882, 1/B5/2940:2943 | Multiple bulged bases geometric IL_5TBW_109 | NA IL_13730.12* | ||
1/B5/2889:2891, 1/B5/2912:2914 | geometric IL_5TBW_110 | NA IL_01312.13* | ||
1/B5/2891:2892, 1/B5/2909:2912 | homologous IL_5TBW_346 | NA | ||
1/B5/2918:2920, 1/B5/2926:2928 | geometric IL_5TBW_112 | NA IL_01312.13* | ||
1/B5/2960:2961, 1/B5/2970:2972 | homologous IL_5TBW_348 | NA | ||
1/B5/3004:3007, 1/B5/3139:3144 | homologous IL_5TBW_349 | NA | ||
1/B5/3012:3014, 1/B5/3040:3042 | homologous IL_5TBW_350 | NA | ||
1/B5/3018:3025, 1/B5/3030:3036 | homologous IL_5TBW_351 | NA | ||
1/B5/3047:3051, 1/B5/3091:3094 | homologous IL_5TBW_352 | NA | ||
1/B5/3054:3059, 1/B5/3084:3088 | homologous IL_5TBW_353 | NA | ||
1/B5/3063:3064, 1/B5/3077:3080 | homologous IL_5TBW_354 | NA | ||
1/B5/3103:3107, 1/B5/3127:3131 | homologous IL_5TBW_355 | NA | ||
1/B5/3161:3166, 1/B5/3284:3289 | homologous IL_5TBW_356 | NA | ||
1/B5/3168:3170, 1/B5/3280:3282 | homologous IL_5TBW_357 | NA | ||
1/B5/3177:3179, 1/B5/3210:3211 | Single bulged A geometric IL_5TBW_123 | NA IL_80007.16* | ||
1/B5/3179:3188, 1/B5/3204:3210 | homologous IL_5TBW_359 | NA | ||
1/B5/3193:3194, 1/B5/3197:3199 | Single bulged U geometric IL_5TBW_125 | NA IL_83039.11* | ||
1/B5/3225:3229, 1/B5/3258:3260 | homologous IL_5TBW_361 | NA | ||
1/B5/3233:3235, 1/B5/3252:3254 | homologous IL_5TBW_362 | NA | ||
1/B5/3235:3238, 1/B5/3249:3252 | Tandem non-canonical cWW pairs geometric IL_6MWN_005 | NA IL_85877.10* | ||
1/B5/3300:3303, 1/B5/3311:3314 | homologous IL_5TBW_364 | NA | ||
1/B5/3318:3320, 1/B5/3387:3388 | homologous IL_5TBW_365 | NA | ||
1/B5/3324:3325, 1/B5/3381:3383 | homologous IL_5TBW_366 | NA | ||
1/B5/3328:3330, 1/B5/3373:3378 | homologous IL_5TBW_367 | NA | ||
1/B5/3332:3337, 1/B5/3367:3371 | homologous IL_5TBW_368 | NA | ||
1/B5/3340:3342, 1/B5/3363:3364 | homologous IL_5TBW_369 | NA | ||
1/B5/3342:3345, 1/B5/3360:3363 | Double sheared geometric IL_4V9F_100 | NA IL_09705.7* | ||
1/B5/3349:3350, 1/B5/3353:3356 | homologous IL_5TBW_371 | NA | ||
1/B7/15:16, 1/B7/63:65 | Single bulged A homologous IL_5TBW_372 | NA IL_80007.16* | ||
1/B7/21:27, 1/B7/53:58 | homologous IL_5TBW_373 | NA IL_05523.1* | ||
1/B7/28:29, 1/B7/49:52 | Minor groove platform geometric IL_5TBW_374 | NA IL_94431.4* | ||
1/B7/29:30, 1/B7/47:49 | Single stack bend homologous IL_5TBW_375 | NA IL_04038.4* | ||
1/B7/32:36, 1/B7/41:45 | Symmetric double minor groove platform homologous IL_5TBW_376 | NA IL_58103.5* | ||
1/B7/72:80, 1/B7/100:106 | 8x7 Sarcin-Ricin; G-bulge homologous IL_5TBW_377 | NA IL_04346.5* | ||
1/B7/84:87, 1/B7/94:96 | homologous IL_5TBW_378 | NA IL_01312.13* | ||
1/B8/44:64, 1/B8/96:100 | homologous |