4V8C Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V8C_001 | 1/AA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_29414.1 | |
| HL_4V8C_002 | 1/AA/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_17926.5 | |
| HL_4V8C_003 | 1/AA/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_62869.3 | |
| HL_4V8C_004 | 1/AA/137A:141A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_86069.1 | |
| HL_4V8C_005 | 1/AA/155:171 | No text annotation Not in a motif group | ||
| HL_4V8C_006 | 1/AA/194:201 | No text annotation Not in a motif group | geometric HL_7RQB_006 HL_23481.5 | |
| HL_4V8C_007 | 1/AA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_06569.2 | |
| HL_4V8C_008 | 1/AA/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.5 | |
| HL_4V8C_009 | 1/AA/270K:270N | No text annotation Not in a motif group | ||
| HL_4V8C_010 | 1/AA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_68493.6 | |
| HL_4V8C_011 | 1/AA/319:323 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_98557.5 | |
| HL_4V8C_012 | 1/AA/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.6 | |
| HL_4V8C_013 | 1/AA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.3 | |
| HL_4V8C_014 | 1/AA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_32512.8 | |
| HL_4V8C_015 | 1/AA/462:467 | GNRA Not in a motif group | homologous HL_5J7L_147 HL_43074.18 | |
| HL_4V8C_016 | 1/AA/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_43074.18 | |
| HL_4V8C_017 | 1/AA/544:549 | GNRA Not in a motif group | geometric HL_4V88_218 HL_43074.18 | |
| HL_4V8C_018 | 1/AA/566:575 | No text annotation Not in a motif group | geometric HL_7RQB_018 HL_33239.17 | |
| HL_4V8C_019 | 1/AA/611:617 | No text annotation Not in a motif group | homologous HL_7A0S_019 HL_22515.1 | |
| HL_4V8C_020 | 1/AA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_43074.18 | |
| HL_4V8C_021 | 1/AA/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_02361.6 | |
| HL_4V8C_023 | 1/AA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_93727.5 | |
| HL_4V8C_024 | 1/AA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.5 | |
| HL_4V8C_025 | 1/AA/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_77081.1 | |
| HL_4V8C_026 | 1/AA/826:831 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_15942.5 | |
| HL_4V8C_027 | 1/AA/883:893 | No text annotation Not in a motif group | ||
| HL_4V8C_028 | 1/AA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_43074.18 | |
| HL_4V8C_029 | 1/AA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_72451.5 | |
| HL_4V8C_030 | 1/AA/1064:1074 | No text annotation Not in a motif group | homologous HL_6PRV_001 HL_92304.3 | |
| HL_4V8C_031 | 1/AA/1092:1099 | No text annotation Not in a motif group | geometric HL_5J7L_151 HL_25660.1 | |
| HL_4V8C_032 | 1/AA/1171:1178 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_18722.3 | |
| HL_4V8C_033 | 1/AA/1223:1228 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_43074.18 | |
| HL_4V8C_034 | 1/AA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_33239.17 | |
| HL_4V8C_035 | 1/AA/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_86880.5 | |
| HL_4V8C_036 | 1/AA/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_43074.18 | |
| HL_4V8C_037 | 1/AA/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_78457.4 | |
| HL_4V8C_038 | 1/AA/1451:1459 | No text annotation Not in a motif group | homologous HL_7RQB_037 HL_71540.1 | |
| HL_4V8C_039 | 1/AA/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_86880.5 | |
| HL_4V8C_040 | 1/AA/1533:1538 | No text annotation Not in a motif group | ||
| HL_4V8C_041 | 1/AA/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_69353.7 | |
| HL_4V8C_042 | 1/AA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_66171.3 | |
| HL_4V8C_043 | 1/AA/1630A:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_86880.5 | |
| HL_4V8C_044 | 1/AA/1691:1696 | UNCG Not in a motif group | homologous HL_5J7L_175 HL_79299.11 | |
| HL_4V8C_045 | 1/AA/1727:1733 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_49638.1 | |
| HL_4V8C_046 | 1/AA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_79272.3 | |
| HL_4V8C_047 | 1/AA/1777:1787 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.4 | |
| HL_4V8C_048 | 1/AA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_43074.18 | |
| HL_4V8C_049 | 1/AA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_43074.18 | |
| HL_4V8C_050 | 1/AA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_98248.1 | |
| HL_4V8C_051 | 1/AA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_53760.4 | |
| HL_4V8C_052 | 1/AA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.5 | |
| HL_4V8C_053 | 1/AA/2143:2148 | No text annotation Not in a motif group | homologous HL_7RQB_051 NA | |
| HL_4V8C_054 | 1/AA/2209:2215 | No text annotation Not in a motif group | geometric HL_5TBW_004 HL_36982.3 | |
| HL_4V8C_055 | 1/AA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4V8C_056 | 1/AA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.5 | |
| HL_4V8C_057 | 1/AA/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_4V8C_058 | 1/AA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_46142.8 | |
| HL_4V8C_059 | 1/AA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_93727.5 | |
| HL_4V8C_060 | 1/AA/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_43074.18 | |
| HL_4V8C_061 | 1/AA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_48376.4 | |
| HL_4V8C_062 | 1/AA/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_36421.5 | |
| HL_4V8C_063 | 1/AA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_92681.5 | |
| HL_4V8C_064 | 1/AA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_26055.6 | |
| HL_4V8C_065 | 1/AA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_43074.18 | |
| HL_4V8C_066 | 1/AA/2658:2663 | No text annotation Not in a motif group | homologous HL_7RQB_064 HL_43074.18 | |
| HL_4V8C_067 | 1/AA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_31583.1 | |
| HL_4V8C_068 | 1/AA/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.5 | |
| HL_4V8C_069 | 1/AA/2794:2802 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_79299.11 | |
| HL_4V8C_070 | 1/AA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_05018.6 | |
| HL_4V8C_071 | 1/AA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_43074.18 | |
| HL_4V8C_072 | 1/AB/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_02733.5 | |
| HL_4V8C_073 | 1/AB/86:90 | GNRA Not in a motif group | homologous HL_4V9F_072 HL_43074.18 | |
| HL_4V8C_074 | 1/BA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_29414.1 | |
| HL_4V8C_075 | 1/BA/87:95 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_69459.1 | |
| HL_4V8C_076 | 1/BA/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_62869.3 | |
| HL_4V8C_077 | 1/BA/137A:141A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_86069.1 | |
| HL_4V8C_079 | 1/BA/194:201 | No text annotation Not in a motif group | geometric HL_7RQB_006 HL_23481.5 | |
| HL_4V8C_080 | 1/BA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_06569.2 | |
| HL_4V8C_081 | 1/BA/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.5 | |
| HL_4V8C_082 | 1/BA/270K:270N | No text annotation Not in a motif group | ||
| HL_4V8C_083 | 1/BA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_68493.6 | |
| HL_4V8C_084 | 1/BA/319:323 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_98557.5 | |
| HL_4V8C_085 | 1/BA/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.6 | |
| HL_4V8C_086 | 1/BA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.3 | |
| HL_4V8C_087 | 1/BA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_32512.8 | |
| HL_4V8C_088 | 1/BA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_43074.18 | |
| HL_4V8C_089 | 1/BA/487:493 | No text annotation Not in a motif group | homologous HL_7A0S_016 HL_43074.18 | |
| HL_4V8C_090 | 1/BA/544:549 | GNRA Not in a motif group | geometric HL_6UFG_004 HL_43074.18 | |
| HL_4V8C_091 | 1/BA/566:575 | No text annotation Not in a motif group | geometric HL_7RQB_018 HL_33239.17 | |
| HL_4V8C_092 | 1/BA/611:617 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_49196.4 | |
| HL_4V8C_093 | 1/BA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_43074.18 | |
| HL_4V8C_094 | 1/BA/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_02361.6 | |
| HL_4V8C_096 | 1/BA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_93727.5 | |
| HL_4V8C_097 | 1/BA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.5 | |
| HL_4V8C_098 | 1/BA/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_77081.1 | |
| HL_4V8C_099 | 1/BA/826:831 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_15942.5 | |
| HL_4V8C_100 | 1/BA/884:892 | No text annotation Not in a motif group | ||
| HL_4V8C_101 | 1/BA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_43074.18 | |
| HL_4V8C_102 | 1/BA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_72451.5 | |
| HL_4V8C_103 | 1/BA/1064:1074 | No text annotation Not in a motif group | homologous HL_5J7L_161 HL_92304.3 | |
| HL_4V8C_104 | 1/BA/1092:1099 | No text annotation Not in a motif group | ||
| HL_4V8C_105 | 1/BA/1171:1178 | No text annotation Not in a motif group | ||
| HL_4V8C_106 | 1/BA/1223:1228 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_43074.18 | |
| HL_4V8C_107 | 1/BA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_33239.17 | |
| HL_4V8C_108 | 1/BA/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_86880.5 | |
| HL_4V8C_109 | 1/BA/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_43074.18 | |
| HL_4V8C_110 | 1/BA/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_78457.4 | |
| HL_4V8C_111 | 1/BA/1451:1459 | No text annotation Not in a motif group | homologous HL_7RQB_037 HL_71540.1 | |
| HL_4V8C_112 | 1/BA/1491:1499 | No text annotation Not in a motif group | geometric HL_2A43_001 HL_01181.4 | |
| HL_4V8C_113 | 1/BA/1533:1538 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_30541.1 | |
| HL_4V8C_114 | 1/BA/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_69353.7 | |
| HL_4V8C_115 | 1/BA/1612:1619 | No text annotation Not in a motif group | homologous HL_7A0S_040 HL_66171.3 | |
| HL_4V8C_116 | 1/BA/1630A:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_86880.5 | |
| HL_4V8C_117 | 1/BA/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_79299.11 | |
| HL_4V8C_118 | 1/BA/1727:1733 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_49638.1 | |
| HL_4V8C_119 | 1/BA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_79272.3 | |
| HL_4V8C_120 | 1/BA/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.4 | |
| HL_4V8C_121 | 1/BA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_43074.18 | |
| HL_4V8C_122 | 1/BA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_43074.18 | |
| HL_4V8C_123 | 1/BA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_98248.1 | |
| HL_4V8C_124 | 1/BA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_53760.4 | |
| HL_4V8C_125 | 1/BA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.5 | |
| HL_4V8C_126 | 1/BA/2143:2148 | UNCG Not in a motif group | homologous HL_3U4M_001 HL_79299.11 | |
| HL_4V8C_127 | 1/BA/2209:2215 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_82131.1 | |
| HL_4V8C_128 | 1/BA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4V8C_129 | 1/BA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.5 | |
| HL_4V8C_130 | 1/BA/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_4V8C_131 | 1/BA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_46142.8 | |
| HL_4V8C_132 | 1/BA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_93727.5 | |
| HL_4V8C_133 | 1/BA/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_43074.18 | |
| HL_4V8C_134 | 1/BA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_48376.4 | |
| HL_4V8C_135 | 1/BA/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_36421.5 | |
| HL_4V8C_136 | 1/BA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_92681.5 | |
| HL_4V8C_137 | 1/BA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_26055.6 | |
| HL_4V8C_138 | 1/BA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_43074.18 | |
| HL_4V8C_139 | 1/BA/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_43074.18 | |
| HL_4V8C_140 | 1/BA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_31583.1 | |
| HL_4V8C_141 | 1/BA/2745:2759 | No text annotation Not in a motif group | homologous HL_7A0S_065 HL_56677.5 | |
| HL_4V8C_142 | 1/BA/2794:2802 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_40469.1 | |
| HL_4V8C_143 | 1/BA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_05018.6 | |
| HL_4V8C_144 | 1/BA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_43074.18 | |
| HL_4V8C_145 | 1/BB/38:44 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_98557.5 | |
| HL_4V8C_146 | 1/BB/86:90 | Other HL Not in a motif group | geometric HL_2CZJ_007 HL_79299.11 | |
| HL_4V8C_147 | 1/CA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_67265.4 | |
| HL_4V8C_149 | 1/CA/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_43074.18 | |
| HL_4V8C_150 | 1/CA/186D:191C | No text annotation Not in a motif group | ||
| HL_4V8C_151 | 1/CA/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_57052.3 | |
| HL_4V8C_152 | 1/CA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_93727.5 | |
| HL_4V8C_153 | 1/CA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_43074.18 | |
| HL_4V8C_154 | 1/CA/320:333 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_4V8C_155 | 1/CA/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_79299.11 | |
| HL_4V8C_156 | 1/CA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_43074.18 | |
| HL_4V8C_157 | 1/CA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_79299.11 | |
| HL_4V8C_158 | 1/CA/458:474 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_68304.6 | |
| HL_4V8C_159 | 1/CA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_62869.3 | |
| HL_4V8C_160 | 1/CA/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26055.6 | |
| HL_4V8C_161 | 1/CA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_87219.4 | |
| HL_4V8C_162 | 1/CA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_43074.18 | |
| HL_4V8C_163 | 1/CA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_87219.4 | |
| HL_4V8C_164 | 1/CA/838:848 | No text annotation Not in a motif group | geometric HL_4LFB_005 HL_57052.3 | |
| HL_4V8C_165 | 1/CA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_43074.18 | |
| HL_4V8C_166 | 1/CA/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_43074.18 | |
| HL_4V8C_167 | 1/CA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4V8C_168 | 1/CA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_43074.18 | |
| HL_4V8C_169 | 1/CA/1028B:1032A | No text annotation Not in a motif group | ||
| HL_4V8C_170 | 1/CA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_43074.18 | |
| HL_4V8C_171 | 1/CA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_54035.7 | |
| HL_4V8C_172 | 1/CA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_4V8C_173 | 1/CA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_43074.18 | |
| HL_4V8C_174 | 1/CA/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_43074.18 | |
| HL_4V8C_175 | 1/CA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_78061.2 | |
| HL_4V8C_176 | 1/CA/1356:1366 | No text annotation Not in a motif group | ||
| HL_4V8C_177 | 1/CA/1449:1454 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_16568.1 | |
| HL_4V8C_178 | 1/CA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4V8C_179 | 1/CB/12:24 | No text annotation Not in a motif group | homologous HL_2DLC_001 NA | |
| HL_4V8C_180 | 1/CB/32:40 | tRNA anticodon loop Not in a motif group | homologous HL_5IBB_210 HL_97724.2 | |
| HL_4V8C_182 | 1/CB/64:72 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_6PMO_005 HL_33239.17 | |
| HL_4V8C_183 | 1/CC/13:23 | No text annotation Not in a motif group | homologous HL_4TUE_033 HL_51876.1 | |
| HL_4V8C_184 | 1/CC/32:40 | No text annotation Not in a motif group | homologous HL_5E81_212 NA | |
| HL_4V8C_185 | 1/CC/54:62 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V9Q_215 HL_33239.17 | |
| HL_4V8C_186 | 1/CD/12:24 | No text annotation Not in a motif group | homologous HL_5IB8_207 NA | |
| HL_4V8C_188 | 1/CD/52:64 | No text annotation Not in a motif group | ||
| HL_4V8C_189 | 1/DA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_67265.4 | |
| HL_4V8C_190 | 1/DA/82:87 | No text annotation Not in a motif group | ||
| HL_4V8C_191 | 1/DA/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_43074.18 | |
| HL_4V8C_192 | 1/DA/186F:191A | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_44730.2 | |
| HL_4V8C_193 | 1/DA/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_57052.3 | |
| HL_4V8C_194 | 1/DA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_93727.5 | |
| HL_4V8C_195 | 1/DA/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_43074.18 | |
| HL_4V8C_196 | 1/DA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4V8C_197 | 1/DA/342:347 | UNCG Not in a motif group | homologous HL_5J7L_009 HL_79299.11 | |
| HL_4V8C_198 | 1/DA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_43074.18 | |
| HL_4V8C_199 | 1/DA/419:424 | No text annotation Not in a motif group | homologous HL_6CZR_082 HL_79299.11 | |
| HL_4V8C_200 | 1/DA/458:474 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_68304.6 | |
| HL_4V8C_201 | 1/DA/522:527 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_98557.5 | |
| HL_4V8C_202 | 1/DA/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26055.6 | |
| HL_4V8C_203 | 1/DA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_87219.4 | |
| HL_4V8C_204 | 1/DA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_43074.18 | |
| HL_4V8C_205 | 1/DA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_87219.4 | |
| HL_4V8C_206 | 1/DA/838:848 | No text annotation Not in a motif group | homologous HL_4LFB_018 HL_18722.3 | |
| HL_4V8C_207 | 1/DA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_43074.18 | |
| HL_4V8C_208 | 1/DA/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_43074.18 | |
| HL_4V8C_209 | 1/DA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4V8C_210 | 1/DA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_43074.18 | |
| HL_4V8C_212 | 1/DA/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_43074.18 | |
| HL_4V8C_213 | 1/DA/1089:1096 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_54035.7 | |
| HL_4V8C_214 | 1/DA/1133:1141 | No text annotation Not in a motif group | ||
| HL_4V8C_215 | 1/DA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_43074.18 | |
| HL_4V8C_216 | 1/DA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_43074.18 | |
| HL_4V8C_217 | 1/DA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_78061.2 | |
| HL_4V8C_218 | 1/DA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_70505.1 | |
| HL_4V8C_219 | 1/DA/1449:1454 | No text annotation Not in a motif group | geometric HL_4TUW_002 HL_22447.1 | |
| HL_4V8C_220 | 1/DA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4V8C_221 | 1/DB/11:25 | No text annotation Not in a motif group | homologous HL_4WSM_208 HL_42211.1 | |
| HL_4V8C_222 | 1/DB/32:40 | tRNA anticodon loop Not in a motif group | homologous HL_4YCO_002 HL_97724.2 | |
| HL_4V8C_224 | 1/DB/64:72 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_6PMO_005 HL_33239.17 | |
| HL_4V8C_225 | 1/DC/13:23 | No text annotation Not in a motif group | homologous HL_4TUE_033 HL_51876.1 | |
| HL_4V8C_226 | 1/DC/32:40 | No text annotation Not in a motif group | homologous HL_5E81_212 NA | |
| HL_4V8C_227 | 1/DC/54:62 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V9Q_215 HL_33239.17 | |
| HL_4V8C_228 | 1/DD/12:24 | No text annotation Not in a motif group | geometric HL_5TBW_012 HL_94386.1 | |
| HL_4V8C_229 | 1/DD/32:40 | No text annotation Not in a motif group | ||
| HL_4V8C_230 | 1/DD/52:64 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V8C_022 | No text annotation | ||
| HL_4V8C_078 | No text annotation | ||
| HL_4V8C_095 | No text annotation | ||
| HL_4V8C_148 | No text annotation | ||
| HL_4V8C_181 | No text annotation | ||
| HL_4V8C_187 | No text annotation | ||
| HL_4V8C_211 | No text annotation | ||
| HL_4V8C_223 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V8C_001 | 1/AA/24:30, 1/AA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.5 | |
| IL_4V8C_002 | 1/AA/36:37, 1/AA/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_80007.16 | |
| IL_4V8C_003 | 1/AA/43:45, 1/AA/433:436 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_95485.6 | |
| IL_4V8C_004 | 1/AA/81:85, 1/AA/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_29549.9 | |
| IL_4V8C_005 | 1/AA/183:184, 1/AA/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_04038.4 | |
| IL_4V8C_006 | 1/AA/188:194, 1/AA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.5 | |
| IL_4V8C_007 | 1/AA/239:245, 1/AA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_35110.5 | |
| IL_4V8C_008 | 1/AA/270J:270K, 1/AA/270N:270P | Single bulged U Not in a motif group | homologous IL_7RQB_008 IL_83039.11 | |
| IL_4V8C_009 | 1/AA/271:272, 1/AA/365:366 | No text annotation Not in a motif group | ||
| IL_4V8C_010 | 1/AA/273:273A, 1/AA/363E:364 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_13730.12 | |
| IL_4V8C_011 | 1/AA/273F:279, 1/AA/361:363 | No text annotation Not in a motif group | ||
| IL_4V8C_012 | 1/AA/280:284, 1/AA/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_08757.3 | |
| IL_4V8C_013 | 1/AA/288:290, 1/AA/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.6 | |
| IL_4V8C_014 | 1/AA/293:295, 1/AA/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_4V8C_015 | 1/AA/378:380, 1/AA/394:396 | No text annotation Not in a motif group | geometric IL_7RQB_083 IL_01312.13 | |
| IL_4V8C_016 | 1/AA/481:484, 1/AA/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.5 | |
| IL_4V8C_017 | 1/AA/564:566, 1/AA/575:577 | No text annotation Not in a motif group | homologous IL_7RQB_015 IL_01312.13 | |
| IL_4V8C_018 | 1/AA/606:609A, 1/AA/618A:622 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_56467.6 | |
| IL_4V8C_019 | 1/AA/672:674, 1/AA/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_01312.13 | |
| IL_4V8C_020 | 1/AA/674:678, 1/AA/799:806 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_4WF9_021 IL_17470.5 | |
| IL_4V8C_021 | 1/AA/697:698, 1/AA/763:765 | Single bulged A Not in a motif group | homologous IL_7RQB_019 IL_80007.16 | |
| IL_4V8C_022 | 1/AA/702:703, 1/AA/728:730 | Single bulged G Not in a motif group | homologous IL_7RQB_020 IL_59137.10 | |
| IL_4V8C_023 | 1/AA/703:707, 1/AA/724:728 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.6 | |
| IL_4V8C_024 | 1/AA/738:741, 1/AA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_95485.6 | |
| IL_4V8C_025 | 1/AA/775:777, 1/AA/787:791 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 IL_90991.5 | |
| IL_4V8C_026 | 1/AA/837:838, 1/AA/940:942 | Single stack bend Not in a motif group | homologous IL_4WF9_028 IL_04038.4 | |
| IL_4V8C_027 | 1/AA/844:846, 1/AA/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_01312.13 | |
| IL_4V8C_028 | 1/AA/846:850, 1/AA/928:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 IL_94165.1 | |
| IL_4V8C_029 | 1/AA/858:862, 1/AA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7RQB_027 IL_83354.1 | |
| IL_4V8C_030 | 1/AA/862:863, 1/AA/913:915 | Minor groove platform Not in a motif group | homologous IL_7RQB_028 IL_06437.11 | |
| IL_4V8C_031 | 1/AA/864:868, 1/AA/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_63596.4 | |
| IL_4V8C_032 | 1/AA/870:872, 1/AA/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_034 IL_67621.5 | |
| IL_4V8C_033 | 1/AA/875:879, 1/AA/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.6 | |
| IL_4V8C_034 | 1/AA/880:881, 1/AA/895:897 | No text annotation Not in a motif group | ||
| IL_4V8C_035 | 1/AA/952:954, 1/AA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_01312.13 | |
| IL_4V8C_036 | 1/AA/994:996, 1/AA/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.10 | |
| IL_4V8C_037 | 1/AA/998:1002, 1/AA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_53523.5 | |
| IL_4V8C_038 | 1/AA/1004:1011, 1/AA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.6 | |
| IL_4V8C_039 | 1/AA/1011:1013, 1/AA/1149:1150 | Single bulged U Not in a motif group | homologous IL_7RQB_038 IL_83039.11 | |
| IL_4V8C_040 | 1/AA/1018:1024, 1/AA/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_4V8C_041 | 1/AA/1024:1030, 1/AA/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_55786.1 | |
| IL_4V8C_042 | 1/AA/1031:1034, 1/AA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_55456.1 | |
| IL_4V8C_043 | 1/AA/1043:1051, 1/AA/1108:1112 | Kink-turn Not in a motif group | homologous IL_5J7L_284 IL_90538.3 | |
| IL_4V8C_044 | 1/AA/1059:1063, 1/AA/1075:1079 | No text annotation Not in a motif group | ||
| IL_4V8C_045 | 1/AA/1087:1091, 1/AA/1100:1102 | Major groove platform with extra cWW Not in a motif group | homologous IL_1MMS_002 IL_95485.6 | |
| IL_4V8C_046 | 1/AA/1196:1198, 1/AA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_67621.5 | |
| IL_4V8C_047 | 1/AA/1202:1206, 1/AA/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_4V8C_048 | 1/AA/1208:1215, 1/AA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_29549.9 | |
| IL_4V8C_049 | 1/AA/1219:1221, 1/AA/1229A:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_80007.16 | |
| IL_4V8C_050 | 1/AA/1262:1269, 1/AA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.5 | |
| IL_4V8C_051 | 1/AA/1310:1313, 1/AA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_70995.6 | |
| IL_4V8C_052 | 1/AA/1319:1323, 1/AA/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.4 | |
| IL_4V8C_053 | 1/AA/1351:1355, 1/AA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_53523.5 | |
| IL_4V8C_054 | 1/AA/1357:1361, 1/AA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_39521.5 | |
| IL_4V8C_055 | 1/AA/1415:1416, 1/AA/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.3 | |
| IL_4V8C_056 | 1/AA/1417:1421, 1/AA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_53523.5 | |
| IL_4V8C_057 | 1/AA/1433:1435, 1/AA/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.5 | |
| IL_4V8C_058 | 1/AA/1437:1440, 1/AA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_08757.3 | |
| IL_4V8C_059 | 1/AA/1448:1449A, 1/AA/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_31836.1 | |
| IL_4V8C_060 | 1/AA/1450:1451, 1/AA/1459:1461 | Single bulged A Not in a motif group | geometric IL_7RQB_059 IL_80007.16 | |
| IL_4V8C_061 | 1/AA/1469:1473, 1/AA/1520:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_53523.5 | |
| IL_4V8C_062 | 1/AA/1480:1483, 1/AA/1506:1513 | No text annotation Not in a motif group | ||
| IL_4V8C_063 | 1/AA/1489:1491, 1/AA/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_40508.4 | |
| IL_4V8C_064 | 1/AA/1526:1530, 1/AA/1541:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_89836.1 | |
| IL_4V8C_065 | 1/AA/1651:1656, 1/AA/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_4V8C_066 | 1/AA/1663:1665, 1/AA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.5 | |
| IL_4V8C_067 | 1/AA/1666:1669, 1/AA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_80663.10 | |
| IL_4V8C_068 | 1/AA/1669:1674, 1/AA/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_01312.13 | |
| IL_4V8C_069 | 1/AA/1686:1691, 1/AA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_66584.5 | |
| IL_4V8C_070 | 1/AA/1770:1771, 1/AA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_80007.16 | |
| IL_4V8C_071 | 1/AA/1798:1804, 1/AA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_4V8C_072 | 1/AA/1837:1840, 1/AA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_31836.1 | |
| IL_4V8C_073 | 1/AA/1841:1842, 1/AA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_13730.12 | |
| IL_4V8C_074 | 1/AA/1846:1849, 1/AA/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_06437.11 | |
| IL_4V8C_075 | 1/AA/1851:1855, 1/AA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_34907.2 | |
| IL_4V8C_076 | 1/AA/1856:1860, 1/AA/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.6 | |
| IL_4V8C_077 | 1/AA/1933:1934, 1/AA/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_318 IL_69632.1 | |
| IL_4V8C_078 | 1/AA/1934:1945, 1/AA/1961:1964 | No text annotation Not in a motif group | geometric IL_7A0S_072 IL_07097.1 | |
| IL_4V8C_079 | 1/AA/2050:2052, 1/AA/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_80663.10 | |
| IL_4V8C_080 | 1/AA/2054:2057, 1/AA/2611:2615 | No text annotation Not in a motif group | ||
| IL_4V8C_081 | 1/AA/2067:2069, 1/AA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.11 | |
| IL_4V8C_082 | 1/AA/2070:2071, 1/AA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_06437.11 | |
| IL_4V8C_083 | 1/AA/2081:2083, 1/AA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.6 | |
| IL_4V8C_084 | 1/AA/2085:2087, 1/AA/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_01312.13 | |
| IL_4V8C_085 | 1/AA/2108:2110, 1/AA/2179:2181 | No text annotation Not in a motif group | geometric IL_5VCI_001 IL_01312.13 | |
| IL_4V8C_086 | 1/AA/2110:2120, 1/AA/2178:2179 | No text annotation Not in a motif group | ||
| IL_4V8C_087 | 1/AA/2124:2127, 1/AA/2161:2174 | No text annotation Not in a motif group | ||
| IL_4V8C_088 | 1/AA/2129:2136, 1/AA/2155:2159 | Kink-turn Not in a motif group | homologous IL_3U4M_004 IL_29549.9 | |
| IL_4V8C_089 | 1/AA/2297:2299, 1/AA/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 IL_38958.6 | |
| IL_4V8C_090 | 1/AA/2350:2353, 1/AA/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.7 | |
| IL_4V8C_091 | 1/AA/2401:2403, 1/AA/2414:2415 | Minor groove platform Not in a motif group | geometric IL_5TBW_039 IL_06437.11 | |
| IL_4V8C_092 | 1/AA/2453:2454, 1/AA/2498:2500 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_04038.4 | |
| IL_4V8C_093 | 1/AA/2454:2455, 1/AA/2496:2498 | Major groove platform Not in a motif group | homologous |