7UCK Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7UCK_002 | 1/2/31:39 | tRNA anticodon loop Not in a motif group | geometric HL_4TUE_034 HL_53597.2 | |
| HL_7UCK_003 | 1/2/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_6PMO_005 HL_22280.1 | |
| HL_7UCK_004 | 1/5/37:44 | No text annotation Not in a motif group | homologous HL_8C3A_001 HL_06192.2 | |
| HL_7UCK_005 | 1/5/68:73 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_7UCK_006 | 1/5/89:95 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_7UCK_007 | 1/5/131:137 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_7UCK_008 | 1/5/204:211 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_7UCK_009 | 1/5/222:226 | No text annotation Not in a motif group | homologous HL_8C3A_006 HL_98984.2 | |
| HL_7UCK_010 | 1/5/230:238 | No text annotation Not in a motif group | ||
| HL_7UCK_011 | 1/5/289:298 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
| HL_7UCK_012 | 1/5/314:323 | No text annotation Not in a motif group | homologous HL_8C3A_009 HL_12078.2 | |
| HL_7UCK_013 | 1/5/367:374 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_7UCK_014 | 1/5/392:399 | No text annotation Not in a motif group | geometric HL_4WF9_041 HL_49288.1 | |
| HL_7UCK_015 | 1/5/759:904 | No text annotation Not in a motif group | ||
| HL_7UCK_016 | 1/5/961:971 | No text annotation Not in a motif group | ||
| HL_7UCK_017 | 1/5/1178:1183 | No text annotation Not in a motif group | ||
| HL_7UCK_018 | 1/5/1315:1328 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_7UCK_019 | 1/5/1364:1373 | No text annotation Not in a motif group | ||
| HL_7UCK_020 | 1/5/1389:1394 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_7UCK_021 | 1/5/1407:1411B | No text annotation Not in a motif group | ||
| HL_7UCK_022 | 1/5/1436:1448 | No text annotation Not in a motif group | geometric HL_1ZCI_002 HL_12078.2 | |
| HL_7UCK_023 | 1/5/1479:1486 | No text annotation Not in a motif group | ||
| HL_7UCK_024 | 1/5/1561:1566 | No text annotation Not in a motif group | homologous HL_8C3A_019 HL_42097.1 | |
| HL_7UCK_025 | 1/5/1593:1602 | No text annotation Not in a motif group | homologous HL_8C3A_020 HL_39334.6 | |
| HL_7UCK_026 | 1/5/1627:1635 | No text annotation Not in a motif group | homologous HL_8C3A_021 HL_33817.1 | |
| HL_7UCK_027 | 1/5/1675:1680 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_7UCK_028 | 1/5/1763:1769 | GNRA Not in a motif group | geometric HL_4WF9_016 HL_42097.1 | |
| HL_7UCK_029 | 1/5/1816:1823 | No text annotation Not in a motif group | homologous HL_8C3A_024 HL_71554.2 | |
| HL_7UCK_030 | 1/5/1864:1870 | No text annotation Not in a motif group | homologous HL_8C3A_025 HL_42097.1 | |
| HL_7UCK_031 | 1/5/1886:1893 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.2 | |
| HL_7UCK_032 | 1/5/1973:1993 | No text annotation Not in a motif group | ||
| HL_7UCK_033 | 1/5/2006:2013 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_7UCK_034 | 1/5/2087:2270 | No text annotation Not in a motif group | ||
| HL_7UCK_035 | 1/5/2317:2322 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_7UCK_036 | 1/5/2376:2384 | No text annotation Not in a motif group | ||
| HL_7UCK_037 | 1/5/2420:2426 | No text annotation Not in a motif group | homologous HL_8C3A_032 HL_46680.1 | |
| HL_7UCK_038 | 1/5/2458:2463 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_76539.2 | |
| HL_7UCK_039 | 1/5/2487:2491 | No text annotation Not in a motif group | ||
| HL_7UCK_040 | 1/5/2523:2532 | No text annotation Not in a motif group | geometric HL_5TBW_035 HL_69023.2 | |
| HL_7UCK_041 | 1/5/2561:2566 | GNRA Not in a motif group | geometric HL_3AM1_003 HL_42097.1 | |
| HL_7UCK_042 | 1/5/2578:2583 | No text annotation Not in a motif group | homologous HL_8C3A_036 HL_42097.1 | |
| HL_7UCK_043 | 1/5/2624:2632 | No text annotation Not in a motif group | homologous HL_8C3A_037 HL_60812.1 | |
| HL_7UCK_044 | 1/5/2664:2670 | Other HL Not in a motif group | geometric HL_4V9F_039 HL_27930.1 | |
| HL_7UCK_045 | 1/5/2705:2710 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_7UCK_046 | 1/5/2738:2742 | No text annotation Not in a motif group | homologous HL_8C3A_040 HL_49678.1 | |
| HL_7UCK_047 | 1/5/2792:2799 | No text annotation Not in a motif group | homologous HL_8C3A_041 HL_64430.2 | |
| HL_7UCK_048 | 1/5/2810:2816 | No text annotation Not in a motif group | homologous HL_8C3A_042 HL_42097.1 | |
| HL_7UCK_049 | 1/5/2872:2877 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_7UCK_050 | 1/5/2901:3598 | No text annotation Not in a motif group | ||
| HL_7UCK_051 | 1/5/3614:3618 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_20062.1 | |
| HL_7UCK_052 | 1/5/3639:3649 | No text annotation Not in a motif group | homologous HL_8C3A_046 HL_43613.5 | |
| HL_7UCK_053 | 1/5/3668:3674 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.1 | |
| HL_7UCK_054 | 1/5/3722:3731 | No text annotation Not in a motif group | ||
| HL_7UCK_055 | 1/5/3757:3767 | No text annotation Not in a motif group | ||
| HL_7UCK_056 | 1/5/3796:3804 | No text annotation Not in a motif group | homologous HL_8C3A_050 HL_51824.1 | |
| HL_7UCK_057 | 1/5/3873:3882 | No text annotation Not in a motif group | ||
| HL_7UCK_058 | 1/5/3948:4065 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_7UCK_059 | 1/5/4193:4201 | No text annotation Not in a motif group | ||
| HL_7UCK_060 | 1/5/4210:4222 | No text annotation Not in a motif group | ||
| HL_7UCK_061 | 1/5/4250:4258 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_7UCK_062 | 1/5/4270:4277 | No text annotation Not in a motif group | homologous HL_8C3A_058 HL_12078.2 | |
| HL_7UCK_063 | 1/5/4301:4309 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_7UCK_064 | 1/5/4321:4326 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_42097.1 | |
| HL_7UCK_065 | 1/5/4352:4362 | No text annotation Not in a motif group | ||
| HL_7UCK_066 | 1/5/4417:4425 | No text annotation Not in a motif group | homologous HL_8C3A_062 HL_06192.2 | |
| HL_7UCK_067 | 1/5/4474:4481 | No text annotation Not in a motif group | homologous HL_8C3A_063 HL_88526.2 | |
| HL_7UCK_068 | 1/5/4497:4503 | No text annotation Not in a motif group | homologous HL_8C3A_064 HL_43656.2 | |
| HL_7UCK_069 | 1/5/4540:4545 | No text annotation Not in a motif group | homologous HL_8C3A_065 HL_42097.1 | |
| HL_7UCK_070 | 1/5/4603:4608 | No text annotation Not in a motif group | homologous HL_8C3A_066 HL_42097.1 | |
| HL_7UCK_071 | 1/5/4646:4651 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_7UCK_072 | 1/5/4688:4702 | No text annotation Not in a motif group | ||
| HL_7UCK_073 | 1/5/4776:4859 | No text annotation Not in a motif group | ||
| HL_7UCK_074 | 1/5/4906:4915 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_7UCK_075 | 1/5/4975:4983 | No text annotation Not in a motif group | homologous HL_8C3A_071 HL_27930.1 | |
| HL_7UCK_076 | 1/5/5021:5028 | No text annotation Not in a motif group | homologous HL_8C3A_072 HL_53837.1 | |
| HL_7UCK_077 | 1/7/36:41 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_87939.1 | |
| HL_7UCK_078 | 1/7/86:91 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_7UCK_079 | 1/8/47:56 | No text annotation Not in a motif group | geometric HL_7RQB_001 HL_99167.1 | |
| HL_7UCK_081 | 1/8/107:112 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_7UCK_082 | 1/8/121:129 | No text annotation Not in a motif group | ||
| HL_7UCK_083 | 1/9/7:17 | No text annotation Not in a motif group | geometric HL_4V88_186 HL_89881.2 | |
| HL_7UCK_084 | 1/9/69:80 | No text annotation Not in a motif group | ||
| HL_7UCK_085 | 1/9/156:162 | Other HL Not in a motif group | geometric HL_4V88_188 HL_76539.2 | |
| HL_7UCK_086 | 1/9/197:202 | Other HL Not in a motif group | geometric HL_5J7L_190 HL_87030.2 | |
| HL_7UCK_087 | 1/9/288:295 | T-loop with 1 bulged base Not in a motif group | geometric HL_4V88_191 HL_27930.1 | |
| HL_7UCK_088 | 1/9/322:329 | No text annotation Not in a motif group | ||
| HL_7UCK_089 | 1/9/377:387 | No text annotation Not in a motif group | ||
| HL_7UCK_090 | 1/9/416:421 | No text annotation Not in a motif group | geometric HL_4V88_194 HL_50142.2 | |
| HL_7UCK_091 | 1/9/441:452 | No text annotation Not in a motif group | geometric HL_4V88_195 HL_84288.1 | |
| HL_7UCK_092 | 1/9/462:467 | UNCG Not in a motif group | geometric HL_5Y85_004 HL_03562.2 | |
| HL_7UCK_093 | 1/9/498:504 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_7UCK_094 | 1/9/539:544 | No text annotation Not in a motif group | geometric HL_7RQB_016 HL_42097.1 | |
| HL_7UCK_095 | 1/9/569:581 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_7UCK_096 | 1/9/618:623 | Other HL Not in a motif group | geometric HL_4V88_200 HL_53845.1 | |
| HL_7UCK_097 | 1/9/820:828 | No text annotation Not in a motif group | homologous HL_8C3A_208 HL_46766.2 | |
| HL_7UCK_098 | 1/9/833:841 | No text annotation Not in a motif group | ||
| HL_7UCK_099 | 1/9/884:902 | No text annotation Not in a motif group | ||
| HL_7UCK_100 | 1/9/957:966 | No text annotation Not in a motif group | geometric HL_5J7L_015 HL_12326.1 | |
| HL_7UCK_101 | 1/9/994:999 | Other HL Not in a motif group | geometric HL_4V88_207 HL_87030.2 | |
| HL_7UCK_102 | 1/9/1054:1064 | No text annotation Not in a motif group | geometric HL_5J7L_017 HL_12326.1 | |
| HL_7UCK_103 | 1/9/1114:1119 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_7UCK_104 | 1/9/1141:1146 | Other HL Not in a motif group | geometric HL_4V88_210 HL_42097.1 | |
| HL_7UCK_105 | 1/9/1178:1183 | GNRA Not in a motif group | geometric HL_4LFB_020 HL_42097.1 | |
| HL_7UCK_106 | 1/9/1245:1254 | No text annotation Not in a motif group | ||
| HL_7UCK_107 | 1/9/1295:1304 | No text annotation Not in a motif group | geometric HL_4V88_213 HL_53597.2 | |
| HL_7UCK_108 | 1/9/1353:1358 | GNRA Not in a motif group | geometric HL_3IGI_003 HL_42097.1 | |
| HL_7UCK_109 | 1/9/1366:1373 | No text annotation Not in a motif group | geometric HL_4V88_215 HL_71554.2 | |
| HL_7UCK_110 | 1/9/1416:1424 | No text annotation Not in a motif group | ||
| HL_7UCK_111 | 1/9/1460:1466 | No text annotation Not in a motif group | geometric HL_1F1T_001 HL_67216.7 | |
| HL_7UCK_112 | 1/9/1565:1570 | GNRA Not in a motif group | geometric HL_3E5C_002 HL_42097.1 | |
| HL_7UCK_113 | 1/9/1614:1625 | No text annotation Not in a motif group | geometric HL_4V88_219 HL_22554.1 | |
| HL_7UCK_114 | 1/9/1658:1666 | No text annotation Not in a motif group | geometric HL_4V88_220 HL_60812.1 | |
| HL_7UCK_115 | 1/9/1760:1772 | No text annotation Not in a motif group | ||
| HL_7UCK_116 | 1/9/1847:1852 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7UCK_001 | No text annotation | ||
| HL_7UCK_080 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7UCK_001 | 1/5/6:7, 1/8/149:151 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_7UCK_002 | 1/5/12:14, 1/8/143:144 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_7UCK_003 | 1/5/16:18, 1/8/139:141 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_7UCK_004 | 1/5/26:27, 1/5/55:57 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_7UCK_005 | 1/5/30:37, 1/5/44:52 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4WF9_008 IL_35728.2 | |
| IL_7UCK_006 | 1/5/81:88, 1/5/96:102 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_7UCK_007 | 1/5/118:121, 1/5/152:153 | Stack outside cWW Not in a motif group | geometric IL_5J7L_268 IL_37629.1 | |
| IL_7UCK_008 | 1/5/121:122, 1/5/147:152 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
| IL_7UCK_009 | 1/5/125:126, 1/5/142:144 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.12 | |
| IL_7UCK_010 | 1/5/168:173, 1/5/263:267 | No text annotation Not in a motif group | ||
| IL_7UCK_011 | 1/5/180:182, 1/5/255:256 | Single stack bend Not in a motif group | geometric IL_4V9F_005 IL_76488.2 | |
| IL_7UCK_012 | 1/5/182:189, 1/5/252:255 | No text annotation Not in a motif group | ||
| IL_7UCK_013 | 1/5/195:196, 1/5/244:246 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.12 | |
| IL_7UCK_014 | 1/5/199:201, 1/5/214:215 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_7UCK_016 | 1/5/348:350, 1/8/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.2 | |
| IL_7UCK_017 | 1/5/387:390, 1/5/401:414 | No text annotation Not in a motif group | homologous IL_8C3A_015 IL_60992.6 | |
| IL_7UCK_018 | 1/5/415:421, 1/8/13:19 | No text annotation Not in a motif group | homologous IL_8C3A_016 IL_66414.6 | |
| IL_7UCK_019 | 1/5/443:446, 1/5/1300:1304 | No text annotation Not in a motif group | geometric IL_6AZ4_001 IL_69145.1 | |
| IL_7UCK_020 | 1/5/448:450, 1/5/1297:1298 | No text annotation Not in a motif group | ||
| IL_7UCK_021 | 1/5/459:460, 1/5/695:697 | Single bulged C Not in a motif group | geometric IL_1S03_002 IL_61258.12 | |
| IL_7UCK_022 | 1/5/462:464, 1/5/691:693 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_7UCK_023 | 1/5/466:472, 1/5/682:689 | No text annotation Not in a motif group | ||
| IL_7UCK_024 | 1/5/480:482, 1/5/672:674 | No text annotation Not in a motif group | geometric IL_5MWI_003 IL_95997.1 | |
| IL_7UCK_025 | 1/5/482:485, 1/5/671:672 | Multiple bulged bases Not in a motif group | geometric IL_6JXM_001 IL_69996.1 | |
| IL_7UCK_026 | 1/5/487:488, 1/5/665:669 | Multiple bulged bases Not in a motif group | geometric IL_1R3E_002 IL_59677.2 | |
| IL_7UCK_027 | 1/5/491:493, 1/5/661:662 | Single bulged U Not in a motif group | geometric IL_4WF9_030 IL_83039.13 | |
| IL_7UCK_028 | 1/5/497:499, 1/5/656:657 | Single bulged C Not in a motif group | geometric IL_3SNP_003 IL_61258.12 | |
| IL_7UCK_029 | 1/5/508:510, 1/5/649:650 | Single bulged A Not in a motif group | geometric IL_6WPI_001 IL_37497.2 | |
| IL_7UCK_030 | 1/5/519:521, 1/5/641:642 | Single stack bend Not in a motif group | geometric IL_4WF9_007 IL_76488.2 | |
| IL_7UCK_031 | 1/5/521:523, 1/5/638:641 | No text annotation Not in a motif group | ||
| IL_7UCK_032 | 1/5/709:710, 1/5/1286:1288 | Single bulged G Not in a motif group | geometric IL_4LFB_036 IL_00225.2 | |
| IL_7UCK_033 | 1/5/723:724, 1/5/942:945 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_59677.2 | |
| IL_7UCK_034 | 1/5/727:731, 1/5/938:939 | No text annotation Not in a motif group | ||
| IL_7UCK_035 | 1/5/732:735, 1/5/928:937 | No text annotation Not in a motif group | ||
| IL_7UCK_036 | 1/5/737:739, 1/5/923:926 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_7UCK_037 | 1/5/745:752, 1/5/911:919 | No text annotation Not in a motif group | geometric IL_5TBW_020 IL_07703.1 | |
| IL_7UCK_038 | 1/5/1073:1074, 1/5/1236:1238 | Single bulged A Not in a motif group | geometric IL_2VPL_002 IL_37497.2 | |
| IL_7UCK_039 | 1/5/1077:1080, 1/5/1219:1233 | No text annotation Not in a motif group | ||
| IL_7UCK_040 | 1/5/1082:1084, 1/5/1213:1217 | Isolated near basepair Not in a motif group | geometric IL_7A0S_030 IL_52767.2 | |
| IL_7UCK_041 | 1/5/1086:1087, 1/5/1209:1211 | Single bulged C Not in a motif group | geometric IL_3SN2_001 IL_61258.12 | |
| IL_7UCK_042 | 1/5/1097:1098, 1/5/1197:1199 | Single stack bend Not in a motif group | geometric IL_7A0S_005 IL_76488.2 | |
| IL_7UCK_043 | 1/5/1100:1168, 1/5/1193:1195 | Single stack bend Not in a motif group | geometric IL_5VSU_003 IL_76488.2 | |
| IL_7UCK_044 | 1/5/1173:1175, 1/5/1186:1188 | Isolated cWH basepair Not in a motif group | geometric IL_3W3S_003 IL_51629.2 | |
| IL_7UCK_045 | 1/5/1347:1349, 1/5/1507:1509 | No text annotation Not in a motif group | ||
| IL_7UCK_046 | 1/5/1357:1360, 1/5/1379:1382 | No text annotation Not in a motif group | ||
| IL_7UCK_047 | 1/5/1360:1361, 1/5/1376:1379 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1U9S_003 IL_69996.1 | |
| IL_7UCK_048 | 1/5/1425:1429, 1/5/1455:1460 | No text annotation Not in a motif group | ||
| IL_7UCK_049 | 1/5/1431:1434, 1/5/1450:1453 | Double sheared Not in a motif group | geometric IL_4LFB_060 IL_09705.9 | |
| IL_7UCK_050 | 1/5/1467:1468, 1/5/1496:1498 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.2 | |
| IL_7UCK_051 | 1/5/1474:1476, 1/5/1489:1490 | Single stack bend Not in a motif group | geometric IL_7A0S_005 IL_76488.2 | |
| IL_7UCK_052 | 1/5/1520:1526, 1/5/1648:1657 | No text annotation Not in a motif group | ||
| IL_7UCK_053 | 1/5/1545:1546, 1/5/1612:1614 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_37497.2 | |
| IL_7UCK_054 | 1/5/1550:1551, 1/5/1576:1578 | No text annotation Not in a motif group | homologous IL_8C3A_032 IL_00225.2 | |
| IL_7UCK_055 | 1/5/1551:1555, 1/5/1572:1576 | No text annotation Not in a motif group | ||
| IL_7UCK_056 | 1/5/1586:1590, 1/5/1604:1607 | No text annotation Not in a motif group | ||
| IL_7UCK_057 | 1/5/1590:1592, 1/5/1603:1604 | Single bulged U Not in a motif group | geometric IL_5TBW_032 IL_83039.13 | |
| IL_7UCK_058 | 1/5/1624:1626, 1/5/1636:1640 | No text annotation Not in a motif group | homologous IL_8C3A_036 IL_90991.6 | |
| IL_7UCK_059 | 1/5/1671:1673, 1/5/1682:1684 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
| IL_7UCK_060 | 1/5/1686:1688, 1/5/1848:1851 | No text annotation Not in a motif group | ||
| IL_7UCK_061 | 1/5/1694:1721, 1/5/1841:1842 | No text annotation Not in a motif group | ||
| IL_7UCK_062 | 1/5/1723:1725, 1/5/1838:1839 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_7UCK_063 | 1/5/1731:1737, 1/5/1792:1798 | No text annotation Not in a motif group | ||
| IL_7UCK_064 | 1/5/1737:1738, 1/5/1790:1792 | No text annotation Not in a motif group | homologous IL_8C3A_042 IL_42622.2 | |
| IL_7UCK_065 | 1/5/1739:1744, 1/5/1786:1789 | No text annotation Not in a motif group | homologous IL_8C3A_043 IL_02509.1 | |
| IL_7UCK_066 | 1/5/1746:1749, 1/5/1781:1784 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.2 | |
| IL_7UCK_067 | 1/5/1749:1751, 1/5/1779:1781 | No text annotation Not in a motif group | homologous IL_8C3A_045 IL_95997.1 | |
| IL_7UCK_068 | 1/5/1753:1756, 1/5/1776:1777 | Major groove platform Not in a motif group | geometric IL_7A0S_073 IL_27635.1 | |
| IL_7UCK_069 | 1/5/1761:1763, 1/5/1769:1771 | No text annotation Not in a motif group | geometric IL_5C5W_002 IL_95997.1 | |
| IL_7UCK_070 | 1/5/1814:1816, 1/5/1823:1824 | Single bulged G Not in a motif group | geometric IL_4V88_442 IL_00225.2 | |
| IL_7UCK_071 | 1/5/1858:1861, 1/5/1873:1876 | No text annotation Not in a motif group | ||
| IL_7UCK_072 | 1/5/1861:1864, 1/5/1870:1873 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1MFQ_004 IL_30621.2 | |
| IL_7UCK_073 | 1/5/1905:1910, 1/5/2066:2071 | No text annotation Not in a motif group | ||
| IL_7UCK_074 | 1/5/1911:1918, 1/5/2064:2065 | No text annotation Not in a motif group | homologous IL_8C3A_052 IL_15861.7 | |
| IL_7UCK_075 | 1/5/1918:1920, 1/5/2063:2064 | No text annotation Not in a motif group | ||
| IL_7UCK_076 | 1/5/1920:1922, 1/5/2062:2063 | No text annotation Not in a motif group | ||
| IL_7UCK_077 | 1/5/1926:1933, 1/5/2053:2058 | No text annotation Not in a motif group | homologous IL_8C3A_054 IL_27086.1 | |
| IL_7UCK_078 | 1/5/1933:1944, 1/5/2038:2053 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_7UCK_079 | 1/5/1946:1948, 1/5/2035:2036 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.13 | |
| IL_7UCK_080 | 1/5/1957:1965, 1/5/2022:2026 | No text annotation Not in a motif group | ||
| IL_7UCK_081 | 1/5/2001:2005, 1/5/2014:2016 | Major groove platform with extra cWW Not in a motif group | geometric IL_5D8H_003 IL_05564.2 | |
| IL_7UCK_082 | 1/5/2083:2085, 1/5/2272:2273 | Single bulged U Not in a motif group | geometric IL_5TBW_032 IL_83039.13 | |
| IL_7UCK_083 | 1/5/2290:2292, 1/5/2342:2345 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_7UCK_084 | 1/5/2296:2298, 1/5/2336:2338 | No text annotation Not in a motif group | ||
| IL_7UCK_085 | 1/5/2299:2301, 1/5/2334:2335 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.2 | |
| IL_7UCK_086 | 1/5/2302:2309, 1/5/2329:2333 | No text annotation Not in a motif group | homologous IL_8C3A_063 IL_70923.2 | |
| IL_7UCK_087 | 1/5/2312:2314, 1/5/2325:2326 | Single bulged A Not in a motif group | geometric IL_7RQB_033 IL_37497.2 | |
| IL_7UCK_088 | 1/5/2415:2419, 1/5/2427:2429 | C-loop Not in a motif group | geometric IL_7A0S_047 IL_37712.2 | |
| IL_7UCK_089 | 1/5/2446:2450, 1/5/2509:2514 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_7UCK_090 | 1/5/2477:2479, 1/5/2499:2500 | Single stack bend Not in a motif group | geometric IL_7RQB_058 IL_76488.2 | |
| IL_7UCK_091 | 1/5/2521:2523, 1/5/2532:2534 | No text annotation Not in a motif group | geometric IL_5AOX_001 IL_95997.1 | |
| IL_7UCK_092 | 1/5/2542:2547, 1/5/2772:2774 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_282 IL_82068.2 | |
| IL_7UCK_093 | 1/5/2549:2550, 1/5/2768:2770 | Single bulged U Not in a motif group | geometric IL_2A64_002 IL_83039.13 | |
| IL_7UCK_094 | 1/5/2589:2593, 1/5/2752:2756 | No text annotation Not in a motif group | ||
| IL_7UCK_095 | 1/5/2613:2614, 1/5/2724:2726 | No text annotation Not in a motif group | homologous IL_8C3A_075 IL_61258.12 | |
| IL_7UCK_096 | 1/5/2614:2615, 1/5/2722:2724 | No text annotation Not in a motif group | homologous IL_8C3A_076 IL_76488.2 | |
| IL_7UCK_097 | 1/5/2646:2648, 1/5/2685:2688 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4V9F_076 IL_38958.7 | |
| IL_7UCK_098 | 1/5/2651:2653, 1/5/2681:2682 | Single bulged G Not in a motif group | geometric IL_3NDB_004 IL_00225.2 | |
| IL_7UCK_099 | 1/5/2656:2662, 1/5/2672:2678 | No text annotation Not in a motif group | homologous IL_8C3A_079 IL_60192.2 | |
| IL_7UCK_100 | 1/5/2704:2705, 1/5/2710:2712 | No text annotation Not in a motif group | ||
| IL_7UCK_101 | 1/5/2832:2838, 1/5/3850:3853 | No text annotation Not in a motif group | homologous IL_8C3A_080 IL_49460.2 | |
| IL_7UCK_102 | 1/5/2844:2846, 1/5/3842:3844 | No text annotation Not in a motif group | homologous IL_8C3A_081 IL_54997.7 | |
| IL_7UCK_103 | 1/5/2847:2850, 1/5/3840:3841 | No text annotation Not in a motif group | homologous IL_8C3A_082 IL_50694.2 | |
| IL_7UCK_104 | 1/5/2850:2855, 1/5/3837:3840 | Intercalated tWH Not in a motif group | geometric IL_4V9F_062 IL_82842.2 | |
| IL_7UCK_105 | 1/5/2867:2872, 1/5/2877:2883 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.2 | |
| IL_7UCK_106 | 1/5/2889:2891, 1/5/3610:3612 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_7UCK_107 | 1/5/2896:2897, 1/5/3602:3605 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_7UCK_108 | 1/5/3632:3633, 1/5/3827:3829 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.2 | |
| IL_7UCK_109 | 1/5/3660:3665, 1/5/3677:3684 | No text annotation Not in a motif group | homologous IL_8C3A_088 IL_64509.1 | |
| IL_7UCK_110 | 1/5/3700:3703, 1/5/3749:3750 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.1 | |
| IL_7UCK_111 | 1/5/3704:3705, 1/5/3745:3748 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_7UCK_112 | 1/5/3708:3710, 1/5/3741:3742 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_76488.2 | |
| IL_7UCK_113 | 1/5/3710:3714, 1/5/3739:3741 | No text annotation Not in a motif group | ||
| IL_7UCK_114 | 1/5/3714:3721, 1/5/3732:3739 | No text annotation Not in a motif group | ||
| IL_7UCK_115 | 1/5/3780:3781, 1/5/3811:3814 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_089 IL_59677.2 | |
| IL_7UCK_116 | 1/5/3781:3793, 1/5/3807:3811 | No text annotation Not in a motif group | ||
| IL_7UCK_117 | 1/5/3895:3898, 1/5/4563:4565 | No text annotation Not in a motif group | ||
| IL_7UCK_118 | 1/5/3898:3900, 1/5/4561:4563 | No text annotation Not in a motif group | ||
| IL_7UCK_119 | 1/5/3900:3902, 1/5/4558:4561 | No text annotation Not in a motif group | homologous IL_8C3A_097 IL_54678.5 | |
| IL_7UCK_120 | 1/5/3913:3915, 1/5/4388:4389 | No text annotation Not in a motif group | homologous IL_8C3A_098 IL_83039.13 | |
| IL_7UCK_121 | 1/5/3916:3917, 1/5/4384:4387 | No text annotation Not in a motif group | homologous IL_8C3A_099 IL_42622.2 | |
| IL_7UCK_122 | 1/5/3925:3927, 1/5/4184:4186 | No text annotation Not in a motif group | ||
| IL_7UCK_123 | 1/5/3927:3929, 1/5/4181:4184 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.7 | |
| IL_7UCK_124 | 1/5/4082:4088, 1/5/4161:4164 | No text annotation Not in a motif group | homologous IL_8C3A_106 IL_74114.1 | |
| IL_7UCK_125 | 1/5/4095:4099, 1/5/4110:4113 | No text annotation Not in a motif group | ||
| IL_7UCK_126 | 1/5/4100:4101, 1/5/4107:4109 | No text annotation Not in a motif group | ||
| IL_7UCK_127 | 1/5/4191:4192, 1/5/4202:4204 | No text annotation Not in a motif group | homologous IL_8C3A_107 IL_69996.1 | |
| IL_7UCK_128 | 1/5/4243:4245, 1/5/4263:4267 | No text annotation Not in a motif group | homologous IL_8C3A_108 IL_38958.7 | |
| IL_7UCK_129 | 1/5/4291:4294, 1/5/4316:4318 | Decoding loop related Not in a motif group | geometric IL_2O3X_003 IL_82842.2 | |
| IL_7UCK_130 | 1/5/4295:4298, 1/5/4312:4315 | No text annotation Not in a motif group | ||
| IL_7UCK_131 | 1/5/4347:4350, 1/5/4364:4365 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_7UCK_132 | 1/5/4400:4405, 1/5/4439:4444 | No text annotation Not in a motif group | ||
| IL_7UCK_133 | 1/5/4405:4407, 1/5/4435:4439 | No text annotation Not in a motif group | homologous IL_8C3A_113 IL_92788.2 | |
| IL_7UCK_134 | 1/5/4412:4416, 1/5/4426:4430 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_7UCK_135 | 1/5/4453:4454, 1/5/4526:4528 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_7UCK_136 | 1/5/4456:4458, 1/5/4520:4524 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_90933.2 | |
| IL_7UCK_137 | 1/5/4458:4459, 1/5/4517:4520 | No text annotation Not in a motif group | homologous IL_8C3A_117 IL_71530.2 | |
| IL_7UCK_138 | 1/5/4466:4468, 1/5/4489:4491 | No text annotation Not in a motif group | homologous IL_8C3A_118 IL_51629.2 | |
| IL_7UCK_139 | 1/5/4468:4470, 1/5/4485:4489 | No text annotation Not in a motif group | ||
| IL_7UCK_140 | 1/5/4493:4495, 1/5/4505:4507 | No text annotation Not in a motif group | geometric IL_5TBW_027 IL_95997.1 | |
| IL_7UCK_141 | 1/5/4495:4497, 1/5/4503:4505 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_95997.1 | |
| IL_7UCK_142 | 1/5/4537:4538, 1/5/4547:4549 | Single bulged A Not in a motif group | geometric IL_7RQB_101 IL_37497.2 | |
| IL_7UCK_143 | 1/5/4580:4582, 1/5/4721:4723 | No text annotation Not in a motif group | geometric IL_3ICQ_003 IL_51629.2 | |
| IL_7UCK_144 | 1/5/4582:4585, 1/5/4717:4721 | No text annotation Not in a motif group | homologous IL_8C3A_123 IL_09705.9 | |
| IL_7UCK_145 | 1/5/4596:4603, 1/5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_7UCK_146 | 1/5/4622:4624, 1/5/4673:4675 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_7UCK_147 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation Not in a motif group | ||
| IL_7UCK_148 | 1/5/4632:4638, 1/5/4661:4666 | Triple sheared related Not in a motif group | geometric IL_5J7L_063 IL_64879.2 | |
| IL_7UCK_149 | 1/5/4638:4640, 1/5/4659:4661 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_012 IL_51629.2 | |
| IL_7UCK_150 | 1/5/4641:4642, 1/5/4655:4658 | No text annotation Not in a motif group | homologous IL_8C3A_128 IL_71530.2 | |
| IL_7UCK_151 | 1/5/4680:4685, 1/5/4705:4710 | UAA/GAN with extra cWW Not in a motif group | geometric IL_5J7L_350 IL_49767.5 | |
| IL_7UCK_152 | 1/5/4739:4743, 1/5/4957:4960 | No text annotation Not in a motif group | ||
| IL_7UCK_153 | 1/5/4743:4746, 1/5/4954:4957 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_100 IL_30621.2 | |
| IL_7UCK_154 | 1/5/4756:4766, 1/5/4868:4877 | No text annotation Not in a motif group | ||
| IL_7UCK_155 | 1/5/4769:4773, 1/5/4862:4865 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_7A0S_040 IL_30621.2 | |
| IL_7UCK_156 | 1/5/4885:4888, 1/5/4931:4934 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_30621.2 | |
| IL_7UCK_157 | 1/5/4890:4896, 1/5/4924:4929 | No text annotation Not in a motif group | ||
| IL_7UCK_158 | 1/5/4898:4902, 1/5/4919:4922 | No text annotation Not in a motif group | ||
| IL_7UCK_159 | 1/5/4972:4975, 1/5/4983:4986 | No text annotation Not in a motif group | homologous IL_8C3A_135 IL_30621.2 | |
| IL_7UCK_160 | 1/5/4992:4994, 1/5/5057:5059 | No text annotation Not in a motif group | geometric IL_3D0U_006 IL_95997.1 | |
| IL_7UCK_161 | 1/5/4996:4997, 1/5/5053:5055 | Single bulged C Not in a motif group | geometric IL_1KUQ_002 IL_61258.12 | |
| IL_7UCK_162 | 1/5/5000:5002, 1/5/5045:5050 | No text annotation Not in a motif group | homologous IL_8C3A_138 IL_90933.2 | |
| IL_7UCK_163 | 1/5/5003:5009, 1/5/5039:5044 | No text annotation Not in a motif group | ||
| IL_7UCK_164 | 1/5/5012:5014, 1/5/5035:5036 | No text annotation Not in a motif group | homologous IL_8C3A_140 IL_83039.13 | |
| IL_7UCK_165 | 1/5/5014:5017, 1/5/5032:5035 | Double sheared Not in a motif group | geometric IL_4V9F_100 IL_09705.9 | |
| IL_7UCK_166 | 1/7/15:16, 1/7/62:64 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_7UCK_167 | 1/7/21:27, 1/7/52:57 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_7UCK_168 | 1/7/28:29, 1/7/48:51 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_7UCK_169 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_7UCK_170 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7A0S_007 IL_04346.7 | |
| IL_7UCK_171 | 1/7/79:81, 1/7/95:97 | No text annotation Not in a motif group | geometric IL_4V88_470 IL_51629.2 | |
| IL_7UCK_172 | 1/7/82:85, 1/7/92:94 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_7UCK_173 | 1/8/64:66, 1/8/92:95 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_7UCK_174 | 1/9/23:25, 1/9/649:651 | No text annotation Not in a motif group | geometric IL_7A0S_020 IL_95997.1 | |
| IL_7UCK_175 | 1/9/26:28, 1/9/646:648 | UU cWW Not in a motif group | geometric IL_3SZX_003 IL_95997.1 | |
| IL_7UCK_176 | 1/9/34:36, 1/9/519:521 | No text annotation Not in a motif group | geometric IL_6IA2_002 IL_95997.1 | |
| IL_7UCK_177 | 1/9/37:40, 1/9/514:518 | Double sheared Not in a motif group | geometric IL_4WF9_016 IL_09705.9 | |
| IL_7UCK_178 | 1/9/41:47, 1/9/479:481 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_7UCK_179 | 1/9/49:51, 1/9/476:477 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_93353.1 | |
| IL_7UCK_180 | 1/9/57:62, 1/9/86:88 | No text annotation Not in a motif group | geometric IL_4V88_389 IL_95004.1 | |
| IL_7UCK_181 | 1/9/63:68, 1/9/81:85 | No text annotation Not in a motif group | geometric IL_4V88_390 IL_77691.1 | |
| IL_7UCK_182 | 1/9/108:110, 1/9/351:353 | No text annotation Not in a motif group | geometric IL_1T0E_002 IL_95997.1 | |
| IL_7UCK_183 | 1/9/110:112, 1/9/349:351 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_7UCK_184 | 1/9/112:115, 1/9/348:349 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_7UCK_185 | 1/9/115:122, 1/9/342:348 | No text annotation Not in a motif group | ||
| IL_7UCK_186 | 1/9/130:144, 1/9/175:182 | No text annotation Not in a motif group | ||
| IL_7UCK_187 | 1/9/144:151, 1/9/167:175 | No text annotation Not in a motif group | ||
| IL_7UCK_188 | 1/9/151:154, 1/9/164:167 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_109 IL_30621.2 | |
| IL_7UCK_189 | 1/9/188:192, 1/9/207:211 | Triple sheared Not in a motif group | geometric IL_4WFL_001 IL_56467.8 | |
| IL_7UCK_190 | 1/9/216:219, 1/9/302:309 | No text annotation Not in a motif group | ||
| IL_7UCK_191 | 1/9/223:288, 1/9/295:298 | No text annotation Not in a motif group | ||
| IL_7UCK_192 | 1/9/312:314, 1/9/336:337 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_37497.2 | |
| IL_7UCK_193 | 1/9/317:320, 1/9/331:333 | No text annotation Not in a motif group | geometric IL_4V88_400 IL_47298.1 | |
| IL_7UCK_194 | 1/9/359:364, 1/9/396:403 | Kink-turn with non-sequential stacking Not in a motif group | geometric IL_5J7L_014 IL_45067.2 | |
| IL_7UCK_195 | 1/9/366:371, 1/9/393:394 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_7UCK_196 | 1/9/411:413, 1/9/424:429 | No text annotation Not in a motif group | geometric IL_4V88_404 IL_11347.1 | |
| IL_7UCK_197 | 1/9/437:439, 1/9/454:456 | Isolated cWH basepair Not in a motif group | geometric IL_4V88_405 IL_51629.2 | |
| IL_7UCK_198 | 1/9/459:461, 1/9/468:470 | Isolated near basepair Not in a motif group | geometric IL_3NJ7_004 IL_52767.2 | |
| IL_7UCK_199 | 1/9/487:489, 1/9/511:512 | Single bulged U Not in a motif group | geometric IL_4LFB_014 IL_83039.13 | |
| IL_7UCK_200 | 1/9/490:495, 1/9/508:510 | No text annotation Not in a motif group | ||
| IL_7UCK_201 | 1/9/495:496, 1/9/506:508 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_7UCK_202 | 1/9/529:530, 1/9/554:556 | Single bulged A Not in a motif group | geometric IL_6WPI_001 IL_37497.2 | |
| IL_7UCK_203 | 1/9/535:537, 1/9/546:549 | No text annotation Not in a motif group | geometric IL_5UNE_004 IL_95997.1 | |
| IL_7UCK_204 | 1/9/563:565, 1/9/585:592 | No text annotation Not in a motif group | homologous IL_8C3A_420 IL_55023.1 | |
| IL_7UCK_205 | 1/9/566:569, 1/9/581:584 | No text annotation Not in a motif group | ||
| IL_7UCK_206 | 1/9/599:608, 1/9/635:637 | No text annotation Not in a motif group | ||
| IL_7UCK_207 | 1/9/611:617, 1/9/624:632 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_7UCK_208 | 1/9/663:665, 1/9/1162:1164 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_7UCK_209 | 1/9/665:671, 1/9/1161:1162 | No text annotation Not in a motif group | geometric IL_4V88_416 IL_69996.1 | |
| IL_7UCK_210 | 1/9/673:675, 1/9/1030:1032 | No text annotation Not in a motif group | geometric IL_4V88_417 IL_95997.1 | |
| IL_7UCK_211 | 1/9/676:680, 1/9/1025:1029 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_418 IL_17136.1 | |
| IL_7UCK_212 | 1/9/692:695, 1/9/731:734 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_109 IL_30621.2 | |
| IL_7UCK_213 | 1/9/745:749, 1/9/794:796 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_7UCK_214 | 1/9/752:754, 1/9/790:791 | No text annotation Not in a motif group | ||
| IL_7UCK_215 | 1/9/802:803, 1/9/860:863 | Major groove minor groove platform; mini C-loop Not in a motif group | geometric IL_4V88_423 IL_09061.6 | |
| IL_7UCK_216 | 1/9/805:807, 1/9/856:858 | No text annotation Not in a motif group | geometric IL_5TBW_115 IL_95997.1 | |
| IL_7UCK_217 | 1/9/807:815, 1/9/849:856 | No text annotation Not in a motif group | geometric IL_4V88_425 IL_69091.1 | |
| IL_7UCK_218 | 1/9/874:876, 1/9/910:912 | No text annotation Not in a motif group | geometric IL_6OL3_002 IL_95997.1 | |
| IL_7UCK_219 | 1/9/877:879, 1/9/907:909 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_7UCK_220 | 1/9/922:923, 1/9/1019:1022 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_428 IL_50694.2 | |
| IL_7UCK_221 | 1/9/925:927, 1/9/1014:1017 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_7UCK_222 | 1/9/928:931, 1/9/1010:1013 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_7UCK_223 | 1/9/931:935, 1/9/1007:1010 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.2 | |
| IL_7UCK_224 | 1/9/942:945, 1/9/981:984 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_432 IL_30621.2 | |
| IL_7UCK_225 | 1/9/952:956, 1/9/967:974 | Kink-turn Not in a motif group | geometric IL_4V88_434 IL_45067.2 | |
| IL_7UCK_226 | 1/9/1042:1047, 1/9/1071:1073 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_7UCK_227 | 1/9/1047:1051, 1/9/1067:1071 | tSH-tHW-tHS Not in a motif group | geometric IL_5J7L_037 IL_17136.1 | |
| IL_7UCK_228 | 1/9/1091:1093, 1/9/1152:1158 | No text annotation Not in a motif group | geometric IL_4V88_437 IL_19557.3 | |
| IL_7UCK_229 | 1/9/1098:1101, 1/9/1131:1134 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.2 | |
| IL_7UCK_230 | 1/9/1101:1103, 1/9/1129:1131 | No text annotation Not in a motif group | geometric IL_4WF9_083 IL_95997.1 | |
| IL_7UCK_231 | 1/9/1108:1110, 1/9/1123:1124 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_93353.1 | |
| IL_7UCK_232 | 1/9/1168:1175, 1/9/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | geometric IL_4V88_440 IL_24606.2 | |
| IL_7UCK_233 | 1/9/1203:1204, 1/9/1694:1696 | Single bulged A Not in a motif group | geometric IL_5J7L_039 IL_37497.2 | |
| IL_7UCK_234 | 1/9/1206:1208, 1/9/1691:1692 | Single bulged G Not in a motif group | geometric IL_5J7L_040 IL_00225.2 | |
| IL_7UCK_235 | 1/9/1214:1217, 1/9/1681:1685 | C-loop Not in a motif group | geometric IL_4V88_443 IL_63596.6 | |
| IL_7UCK_236 | 1/9/1230:1232, 1/9/1526:1528 | No text annotation Not in a motif group | geometric IL_4V88_444 IL_95997.1 | |
| IL_7UCK_237 | 1/9/1235:1236, 1/9/1521:1523 | Minor groove platform Not in a motif group | geometric IL_4V88_445 IL_42622.2 | |
| IL_7UCK_238 | 1/9/1270:1272, 1/9/1510:1512 | No text annotation Not in a motif group | geometric IL_5MWI_006 IL_95997.1 | |
| IL_7UCK_239 | 1/9/1281:1287, 1/9/1314:1316 | No text annotation Not in a motif group | ||
| IL_7UCK_240 | 1/9/1287:1290, 1/9/1309:1314 | No text annotation Not in a motif group | ||
| IL_7UCK_241 | 1/9/1291:1294, 1/9/1305:1308 | No text annotation Not in a motif group | ||
| IL_7UCK_242 | 1/9/1325:1327, 1/9/1502:1503 | Single bulged U Not in a motif group | geometric IL_3MEI_001 IL_83039.13 | |
| IL_7UCK_243 | 1/9/1329:1333, 1/9/1498:1500 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
| IL_7UCK_244 | 1/9/1333:1335, 1/9/1492:1498 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_451 IL_92788.2 | |
| IL_7UCK_245 | 1/9/1336:1338, 1/9/1488:1491 | No text annotation Not in a motif group | ||
| IL_7UCK_246 | 1/9/1347:1349, 1/9/1380:1382 | Isolated cWH basepair Not in a motif group | geometric IL_4V88_453 IL_51629.2 | |
| IL_7UCK_247 | 1/9/1363:1366, 1/9/1373:1375 | Minor groove platform with extra cWW Not in a motif group | geometric IL_5J7L_006 IL_65006.1 | |
| IL_7UCK_248 | 1/9/1395:1399, 1/9/1447:1450 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_002 IL_30621.2 | |
| IL_7UCK_249 | 1/9/1402:1405, 1/9/1441:1444 | Minor groove platform Not in a motif group | geometric IL_4V88_456 IL_76458.1 | |
| IL_7UCK_250 | 1/9/1412:1413, 1/9/1427:1429 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_7UCK_251 | 1/9/1537:1539, 1/9/1594:1596 | No text annotation Not in a motif group | geometric IL_4P3T_001 IL_95997.1 | |
| IL_7UCK_252 | 1/9/1550:1558, 1/9/1577:1582 | No text annotation Not in a motif group | geometric IL_5J7L_055 IL_75461.4 | |
| IL_7UCK_253 | 1/9/1560:1562, 1/9/1573:1575 | No text annotation Not in a motif group | geometric IL_5AOX_001 IL_95997.1 | |
| IL_7UCK_254 | 1/9/1604:1610, 1/9/1629:1635 | No text annotation Not in a motif group | homologous IL_8C3A_469 IL_10092.1 | |
| IL_7UCK_255 | 1/9/1700:1702, 1/9/1833:1836 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_7UCK_256 | 1/9/1702:1705, 1/9/1829:1833 | No text annotation Not in a motif group | ||
| IL_7UCK_257 | 1/9/1706:1708, 1/9/1826:1828 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_7UCK_258 | 1/9/1708:1711, 1/9/1822:1826 | No text annotation Not in a motif group | geometric IL_1CSL_001 IL_67743.1 | |
| IL_7UCK_259 | 1/9/1714:1716, 1/9/1817:1819 | No text annotation Not in a motif group | geometric IL_4J50_002 IL_95997.1 | |
| IL_7UCK_260 | 1/9/1717:1720, 1/9/1813:1816 | Double sheared Not in a motif group | geometric IL_4V88_468 IL_09705.9 | |
| IL_7UCK_261 | 1/9/1720:1722, 1/9/1812:1813 | Single bulged U Not in a motif group | geometric IL_4V88_469 IL_83039.13 | |
| IL_7UCK_262 | 1/9/1727:1729, 1/9/1805:1807 | No text annotation Not in a motif group | ||
| IL_7UCK_263 | 1/9/1729:1731, 1/9/1803:1805 | No text annotation Not in a motif group | geometric IL_4E48_001 IL_95997.1 | |
| IL_7UCK_264 | 1/9/1733:1736, 1/9/1798:1801 | Double sheared Not in a motif group | geometric IL_4V88_471 IL_09705.9 | |
| IL_7UCK_265 | 1/9/1739:1741, 1/9/1793:1795 | UU cWW Not in a motif group | geometric IL_1UN6_005 IL_95997.1 | |
| IL_7UCK_266 | 1/9/1742:1746, 1/9/1788:1792 | Triple sheared Not in a motif group | geometric IL_7RQB_075 IL_56467.8 | |
| IL_7UCK_267 | 1/9/1750:1751, 1/9/1782:1784 | No text annotation Not in a motif group | ||
| IL_7UCK_268 | 1/9/1751:1752, 1/9/1780:1782 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
| IL_7UCK_269 | 1/9/1841:1843, 1/9/1856:1858 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7UCK_015 | Major groove outside cWW, minor groove, intercalation pocket |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7UCK_001 | 1/5/112:116, 1/5/155:160, 1/5/275:278 | No text annotation Not in a motif group | ||
| J3_7UCK_002 | 1/5/380:387, 1/5/414:415, 1/8/19:20 | No text annotation Not in a motif group | ||
| J3_7UCK_003 | 1/5/982:984, 1/5/1070:1072, 1/5/1239:1273 | No text annotation Not in a motif group | ||
| J3_7UCK_004 | 1/5/1531:1537, 1/5/1622:1624, 1/5/1640:1643 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_7UCK_005 | 1/5/1546:1548, 1/5/1580:1584, 1/5/1609:1612 | No text annotation Not in a motif group | homologous J3_8C3A_004 NA | |
| J3_7UCK_006 | 1/5/1969:1972, 1/5/1994:2001, 1/5/2016:2018 | No text annotation Not in a motif group | ||
| J3_7UCK_007 | 1/5/2393:2399, 1/5/2805:2807, 1/5/2819:2822 | No text annotation Not in a motif group | homologous J3_8C3A_006 NA | |
| J3_7UCK_008 | 1/5/2402:2405, 1/5/2785:2791, 1/5/2800:2802 | No text annotation Not in a motif group | ||
| J3_7UCK_009 | 1/5/2440:2445, 1/5/2515:2519, 1/5/2536:2537 | No text annotation Not in a motif group | ||
| J3_7UCK_010 | 1/5/2551:2555, 1/5/2572:2575, 1/5/2757:2767 | No text annotation Not in a motif group | ||
| J3_7UCK_011 | 1/5/2575:2576, 1/5/2585:2589, 1/5/2756:2757 | No text annotation Not in a motif group | ||
| J3_7UCK_012 | 1/5/3937:3939, 1/5/4074:4078, 1/5/4168:4173 | No text annotation Not in a motif group | ||
| J3_7UCK_013 | 1/5/4091:4094, 1/5/4114:4130, 1/5/4154:4158 | No text annotation Not in a motif group | ||
| J3_7UCK_014 | 1/5/4228:4230, 1/5/4331:4343, 1/5/4369:4375 | No text annotation Not in a motif group | ||
| J3_7UCK_015 | 1/5/4241:4243, 1/5/4267:4269, 1/5/4278:4283 | No text annotation Not in a motif group | homologous J3_8C3A_010 NA | |
| J3_7UCK_016 | 1/5/4463:4466, 1/5/4491:4493, 1/5/4507:4513 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_7UCK_017 | 1/5/4970:4972, 1/5/4986:4991, 1/5/5060:5063 | No text annotation Not in a motif group | ||
| J3_7UCK_018 | 1/7/9:14, 1/7/65:67, 1/7/108:110 | No text annotation Not in a motif group | ||
| J3_7UCK_019 | 1/8/44:45, 1/8/58:64, 1/8/95:99 | No text annotation Not in a motif group | ||
| J3_7UCK_020 | 1/9/40:41, 1/9/481:487, 1/9/512:514 | No text annotation Not in a motif group | ||
| J3_7UCK_021 | 1/9/682:685, 1/9/917:922, 1/9/1022:1023 | No text annotation Not in a motif group | ||
| J3_7UCK_022 | 1/9/816:819, 1/9/829:831, 1/9/843:848 | No text annotation Not in a motif group | homologous J3_8C3A_035 NA | |
| J3_7UCK_023 | 1/9/938:941, 1/9/985:993, 1/9/1000:1004 | No text annotation Not in a motif group | ||
| J3_7UCK_024 | 1/9/1094:1096, 1/9/1136:1140, 1/9/1147:1151 | No text annotation Not in a motif group | ||
| J3_7UCK_025 | 1/9/1218:1221, 1/9/1645:1651, 1/9/1673:1680 | No text annotation Not in a motif group | ||
| J3_7UCK_026 | 1/9/1225:1228, 1/9/1530:1532, 1/9/1638:1641 | No text annotation Not in a motif group | ||
| J3_7UCK_027 | 1/9/1237:1244, 1/9/1255:1266, 1/9/1516:1520 | No text annotation Not in a motif group | ||
| J3_7UCK_028 | 1/9/1272:1277, 1/9/1320:1324, 1/9/1504:1510 | No text annotation Not in a motif group | homologous J3_8C3A_041 NA | |
| J3_7UCK_029 | 1/9/1340:1345, 1/9/1384:1389, 1/9/1481:1486 | No text annotation Not in a motif group | ||
| J3_7UCK_030 | 1/9/1350:1351, 1/9/1360:1363, 1/9/1375:1379 | No text annotation Not in a motif group | ||
| J3_7UCK_031 | 1/9/1391:1395, 1/9/1450:1456, 1/9/1470:1479 | No text annotation Not in a motif group | ||
| J3_7UCK_032 | 1/9/1532:1536, 1/9/1597:1604, 1/9/1635:1638 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: