6ZMI Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6ZMI_001 | 1/CC/12:23 | No text annotation Not in a motif group | homologous HL_4V7M_038 HL_86332.1 | |
| HL_6ZMI_002 | 1/CC/31:39 | No text annotation Not in a motif group | ||
| HL_6ZMI_003 | 1/CC/52:60 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_2BTE_004 HL_22280.1 | |
| HL_6ZMI_004 | 1/L5/37:44 | No text annotation Not in a motif group | geometric HL_5TBW_001 HL_06192.2 | |
| HL_6ZMI_005 | 1/L5/68:73 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_6ZMI_006 | 1/L5/89:95 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.7 | |
| HL_6ZMI_007 | 1/L5/131:137 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_6ZMI_008 | 1/L5/204:211 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_6ZMI_009 | 1/L5/222:226 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_6ZMI_010 | 1/L5/230:238 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.9 | |
| HL_6ZMI_011 | 1/L5/289:298 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_71554.2 | |
| HL_6ZMI_012 | 1/L5/314:323 | No text annotation Not in a motif group | homologous HL_8C3A_009 HL_12078.2 | |
| HL_6ZMI_013 | 1/L5/368:373 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_42097.2 | |
| HL_6ZMI_014 | 1/L5/393:398 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_42097.2 | |
| HL_6ZMI_017 | 1/L5/1173:1188 | No text annotation Not in a motif group | ||
| HL_6ZMI_018 | 1/L5/1252:1258 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_91104.1 | |
| HL_6ZMI_019 | 1/L5/1317:1326 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_89380.2 | |
| HL_6ZMI_020 | 1/L5/1364:1373 | No text annotation Not in a motif group | ||
| HL_6ZMI_021 | 1/L5/1389:1394 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.2 | |
| HL_6ZMI_022 | 1/L5/1405:1412 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6ZMI_023 | 1/L5/1436:1448 | No text annotation Not in a motif group | ||
| HL_6ZMI_024 | 1/L5/1480:1484 | No text annotation Not in a motif group | ||
| HL_6ZMI_025 | 1/L5/1561:1566 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_42097.2 | |
| HL_6ZMI_026 | 1/L5/1593:1602 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.6 | |
| HL_6ZMI_027 | 1/L5/1627:1635 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_6ZMI_028 | 1/L5/1675:1680 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_6ZMI_029 | 1/L5/1759:1773 | No text annotation Not in a motif group | ||
| HL_6ZMI_030 | 1/L5/1816:1823 | No text annotation Not in a motif group | geometric HL_5TBW_024 HL_71554.2 | |
| HL_6ZMI_031 | 1/L5/1864:1870 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.2 | |
| HL_6ZMI_032 | 1/L5/1886:1893 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_6ZMI_033 | 1/L5/1982:1987 | No text annotation Not in a motif group | ||
| HL_6ZMI_034 | 1/L5/2006:2013 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_6ZMI_036 | 1/L5/2317:2322 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.2 | |
| HL_6ZMI_037 | 1/L5/2376:2384 | No text annotation Not in a motif group | homologous HL_8C3A_031 HL_89380.2 | |
| HL_6ZMI_038 | 1/L5/2420:2426 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_46680.1 | |
| HL_6ZMI_039 | 1/L5/2458:2463 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_76539.2 | |
| HL_6ZMI_040 | 1/L5/2487:2492 | No text annotation Not in a motif group | ||
| HL_6ZMI_041 | 1/L5/2523:2532 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.2 | |
| HL_6ZMI_042 | 1/L5/2561:2566 | GNRA Not in a motif group | geometric HL_4Y1M_003 HL_42097.2 | |
| HL_6ZMI_043 | 1/L5/2578:2583 | No text annotation Not in a motif group | homologous HL_8C3A_036 HL_42097.2 | |
| HL_6ZMI_044 | 1/L5/2624:2632 | No text annotation Not in a motif group | homologous HL_8C3A_037 HL_60812.1 | |
| HL_6ZMI_045 | 1/L5/2664:2670 | No text annotation Not in a motif group | homologous HL_8C3A_038 HL_86373.2 | |
| HL_6ZMI_046 | 1/L5/2704:2712 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6ZMI_047 | 1/L5/2738:2742 | No text annotation Not in a motif group | ||
| HL_6ZMI_048 | 1/L5/2792:2799 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_64430.2 | |
| HL_6ZMI_049 | 1/L5/2810:2816 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.2 | |
| HL_6ZMI_050 | 1/L5/2872:2877 | UNCG Not in a motif group | geometric HL_4V9F_044 HL_03562.2 | |
| HL_6ZMI_052 | 1/L5/3614:3618 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_28980.1 | |
| HL_6ZMI_053 | 1/L5/3639:3649 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.5 | |
| HL_6ZMI_054 | 1/L5/3668:3674 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.2 | |
| HL_6ZMI_055 | 1/L5/3724:3729 | Other HL Not in a motif group | homologous HL_5TBW_048 HL_42097.2 | |
| HL_6ZMI_056 | 1/L5/3757:3767 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_71924.2 | |
| HL_6ZMI_057 | 1/L5/3796:3804 | No text annotation Not in a motif group | homologous HL_8C3A_050 HL_51824.1 | |
| HL_6ZMI_058 | 1/L5/3873:3882 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.6 | |
| HL_6ZMI_060 | 1/L5/4098:4111 | No text annotation Not in a motif group | ||
| HL_6ZMI_061 | 1/L5/4138:4146 | No text annotation Not in a motif group | ||
| HL_6ZMI_062 | 1/L5/4193:4201 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.2 | |
| HL_6ZMI_063 | 1/L5/4210:4222 | No text annotation Not in a motif group | homologous HL_8C3A_056 HL_19870.6 | |
| HL_6ZMI_064 | 1/L5/4250:4258 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_6ZMI_065 | 1/L5/4270:4277 | No text annotation Not in a motif group | homologous HL_8C3A_058 HL_12078.2 | |
| HL_6ZMI_066 | 1/L5/4301:4309 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_6ZMI_067 | 1/L5/4321:4326 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_42097.2 | |
| HL_6ZMI_068 | 1/L5/4352:4362 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_6ZMI_069 | 1/L5/4417:4425 | No text annotation Not in a motif group | homologous HL_8C3A_062 HL_06192.2 | |
| HL_6ZMI_070 | 1/L5/4474:4481 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_91104.1 | |
| HL_6ZMI_071 | 1/L5/4497:4503 | No text annotation Not in a motif group | geometric HL_5TBW_063 HL_43656.2 | |
| HL_6ZMI_072 | 1/L5/4540:4545 | No text annotation Not in a motif group | homologous HL_8C3A_065 HL_42097.2 | |
| HL_6ZMI_073 | 1/L5/4603:4608 | No text annotation Not in a motif group | geometric HL_7RQB_064 HL_42097.2 | |
| HL_6ZMI_074 | 1/L5/4646:4651 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_6ZMI_075 | 1/L5/4688:4702 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_6ZMI_077 | 1/L5/4907:4914 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_6ZMI_078 | 1/L5/4975:4983 | No text annotation Not in a motif group | geometric HL_5J7L_201 HL_27930.1 | |
| HL_6ZMI_079 | 1/L5/5021:5028 | No text annotation Not in a motif group | ||
| HL_6ZMI_080 | 1/L7/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
| HL_6ZMI_081 | 1/L7/86:91 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.2 | |
| HL_6ZMI_082 | 1/L8/47:56 | No text annotation Not in a motif group | geometric HL_7RQB_001 HL_99167.1 | |
| HL_6ZMI_083 | 1/L8/68:90 | No text annotation Not in a motif group | ||
| HL_6ZMI_086 | 1/S2/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_6ZMI_087 | 1/S2/69:80 | No text annotation Not in a motif group | ||
| HL_6ZMI_088 | 1/S2/156:162 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_6ZMI_089 | 1/S2/195:204 | No text annotation Not in a motif group | ||
| HL_6ZMI_090 | 1/S2/288:295 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_6ZMI_091 | 1/S2/323:329 | No text annotation Not in a motif group | ||
| HL_6ZMI_092 | 1/S2/377:387 | No text annotation Not in a motif group | ||
| HL_6ZMI_093 | 1/S2/416:421 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_6ZMI_094 | 1/S2/441:452 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6ZMI_095 | 1/S2/462:467 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_6ZMI_096 | 1/S2/498:504 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_6ZMI_097 | 1/S2/539:544 | No text annotation Not in a motif group | ||
| HL_6ZMI_098 | 1/S2/569:581 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_6ZMI_099 | 1/S2/618:623 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_6ZMI_101 | 1/S2/820:828 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_6ZMI_102 | 1/S2/832:842 | No text annotation Not in a motif group | ||
| HL_6ZMI_103 | 1/S2/885:901 | No text annotation Not in a motif group | ||
| HL_6ZMI_104 | 1/S2/957:966 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_6ZMI_105 | 1/S2/994:999 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6ZMI_106 | 1/S2/1054:1064 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_6ZMI_107 | 1/S2/1113:1120 | No text annotation Not in a motif group | ||
| HL_6ZMI_108 | 1/S2/1141:1146 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.2 | |
| HL_6ZMI_109 | 1/S2/1178:1183 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.2 | |
| HL_6ZMI_110 | 1/S2/1245:1254 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_6ZMI_111 | 1/S2/1295:1304 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_6ZMI_112 | 1/S2/1353:1358 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.2 | |
| HL_6ZMI_113 | 1/S2/1366:1373 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_6ZMI_114 | 1/S2/1416:1424 | No text annotation Not in a motif group | ||
| HL_6ZMI_115 | 1/S2/1460:1466 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.2 | |
| HL_6ZMI_116 | 1/S2/1565:1570 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.2 | |
| HL_6ZMI_117 | 1/S2/1614:1625 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_6ZMI_118 | 1/S2/1658:1666 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_6ZMI_120 | 1/S2/1847:1852 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6ZMI_015 | No text annotation | ||
| HL_6ZMI_016 | No text annotation | ||
| HL_6ZMI_035 | No text annotation | ||
| HL_6ZMI_051 | No text annotation | ||
| HL_6ZMI_059 | No text annotation | ||
| HL_6ZMI_076 | No text annotation | ||
| HL_6ZMI_084 | No text annotation | ||
| HL_6ZMI_085 | No text annotation | ||
| HL_6ZMI_100 | No text annotation | ||
| HL_6ZMI_119 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6ZMI_001 | 1/CC/10:12, 1/CC/23:25 | No text annotation Not in a motif group | geometric IL_4LFB_010 IL_95997.1 | |
| IL_6ZMI_002 | 1/CC/27:28, 1/CC/42:44 | Single stack bend Not in a motif group | geometric IL_4V9F_005 IL_76488.2 | |
| IL_6ZMI_003 | 1/L5/6:7, 1/L8/149:151 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_6ZMI_004 | 1/L5/12:14, 1/L8/143:144 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.14 | |
| IL_6ZMI_005 | 1/L5/16:18, 1/L8/139:141 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_6ZMI_006 | 1/L5/26:27, 1/L5/55:57 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_6ZMI_007 | 1/L5/30:37, 1/L5/44:52 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4WF9_008 IL_35728.2 | |
| IL_6ZMI_008 | 1/L5/81:88, 1/L5/96:102 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_6ZMI_009 | 1/L5/118:122, 1/L5/147:153 | No text annotation Not in a motif group | ||
| IL_6ZMI_010 | 1/L5/125:126, 1/L5/142:144 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.12 | |
| IL_6ZMI_011 | 1/L5/169:174, 1/L5/262:266 | No text annotation Not in a motif group | ||
| IL_6ZMI_012 | 1/L5/180:184, 1/L5/253:256 | No text annotation Not in a motif group | ||
| IL_6ZMI_013 | 1/L5/184:189, 1/L5/252:253 | Multiple bulged bases Not in a motif group | geometric IL_1R3E_001 IL_16396.2 | |
| IL_6ZMI_014 | 1/L5/195:196, 1/L5/244:246 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.12 | |
| IL_6ZMI_015 | 1/L5/199:201, 1/L5/214:215 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.14 | |
| IL_6ZMI_016 | 1/L5/339:342, 1/L8/32:33 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1U9S_005 IL_88739.1 | |
| IL_6ZMI_017 | 1/L5/348:350, 1/L8/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.3 | |
| IL_6ZMI_018 | 1/L5/387:390, 1/L5/401:414 | No text annotation Not in a motif group | geometric IL_5TBW_014 IL_60992.6 | |
| IL_6ZMI_019 | 1/L5/415:421, 1/L8/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.6 | |
| IL_6ZMI_020 | 1/L5/443:446, 1/L5/1300:1304 | No text annotation Not in a motif group | geometric IL_4PHY_003 IL_23164.1 | |
| IL_6ZMI_021 | 1/L5/448:450, 1/L5/1297:1298 | Single bulged C Not in a motif group | geometric IL_4C7O_003 IL_61258.12 | |
| IL_6ZMI_022 | 1/L5/459:460, 1/L5/695:697 | Single bulged C Not in a motif group | geometric IL_3W3S_001 IL_61258.12 | |
| IL_6ZMI_023 | 1/L5/462:464, 1/L5/691:693 | AA cWW Not in a motif group | geometric IL_5ED1_002 IL_95997.1 | |
| IL_6ZMI_024 | 1/L5/466:472, 1/L5/682:689 | No text annotation Not in a motif group | ||
| IL_6ZMI_025 | 1/L5/482:485, 1/L5/671:672 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_6ZMI_026 | 1/L5/487:488, 1/L5/665:669 | Minor groove platform Not in a motif group | geometric IL_6DTD_003 IL_42622.2 | |
| IL_6ZMI_027 | 1/L5/491:494, 1/L5/659:662 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.3 | |
| IL_6ZMI_028 | 1/L5/494:496, 1/L5/658:659 | Single stack bend Not in a motif group | geometric IL_4V9F_081 IL_76488.2 | |
| IL_6ZMI_029 | 1/L5/496:499, 1/L5/655:658 | No text annotation Not in a motif group | ||
| IL_6ZMI_030 | 1/L5/500:505, 1/L5/653:654 | Multiple bulged bases Not in a motif group | geometric IL_4LFB_007 IL_16396.2 | |
| IL_6ZMI_031 | 1/L5/508:510, 1/L5/649:650 | Single bulged A Not in a motif group | geometric IL_4V88_409 IL_37497.3 | |
| IL_6ZMI_032 | 1/L5/512:515, 1/L5/646:647 | No text annotation Not in a motif group | ||
| IL_6ZMI_033 | 1/L5/709:710, 1/L5/1286:1288 | Single bulged G Not in a motif group | geometric IL_4LFB_036 IL_00225.3 | |
| IL_6ZMI_034 | 1/L5/723:724, 1/L5/942:945 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_59677.2 | |
| IL_6ZMI_035 | 1/L5/727:731, 1/L5/938:939 | No text annotation Not in a motif group | ||
| IL_6ZMI_036 | 1/L5/732:735, 1/L5/928:937 | No text annotation Not in a motif group | ||
| IL_6ZMI_037 | 1/L5/737:739, 1/L5/925:926 | No text annotation Not in a motif group | ||
| IL_6ZMI_038 | 1/L5/739:742, 1/L5/922:925 | No text annotation Not in a motif group | ||
| IL_6ZMI_039 | 1/L5/745:752, 1/L5/911:919 | No text annotation Not in a motif group | geometric IL_5TBW_020 IL_07703.1 | |
| IL_6ZMI_040 | 1/L5/989:994, 1/L5/1050:1064 | No text annotation Not in a motif group | ||
| IL_6ZMI_041 | 1/L5/1073:1074, 1/L5/1237:1239 | Single bulged A Not in a motif group | geometric IL_2VPL_002 IL_37497.3 | |
| IL_6ZMI_042 | 1/L5/1077:1079, 1/L5/1220:1234 | No text annotation Not in a motif group | ||
| IL_6ZMI_043 | 1/L5/1082:1084, 1/L5/1213:1217 | No text annotation Not in a motif group | geometric IL_5ZTM_001 IL_95997.1 | |
| IL_6ZMI_044 | 1/L5/1086:1087, 1/L5/1209:1211 | Single bulged C Not in a motif group | geometric IL_3W3S_001 IL_61258.12 | |
| IL_6ZMI_045 | 1/L5/1093:1094, 1/L5/1201:1203 | No text annotation Not in a motif group | ||
| IL_6ZMI_046 | 1/L5/1094:1096, 1/L5/1199:1201 | No text annotation Not in a motif group | geometric IL_5UNE_009 IL_53251.2 | |
| IL_6ZMI_047 | 1/L5/1099:1100, 1/L5/1194:1196 | Single stack bend Not in a motif group | geometric IL_6FZ0_001 IL_92001.1 | |
| IL_6ZMI_049 | 1/L5/1244:1245, 1/L5/1265:1267 | Single bulged G Not in a motif group | geometric IL_4V88_442 IL_00225.3 | |
| IL_6ZMI_050 | 1/L5/1357:1360, 1/L5/1379:1382 | No text annotation Not in a motif group | ||
| IL_6ZMI_051 | 1/L5/1360:1361, 1/L5/1376:1379 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1NBS_009 IL_69996.1 | |
| IL_6ZMI_052 | 1/L5/1425:1429, 1/L5/1455:1460 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_6ZMI_053 | 1/L5/1431:1434, 1/L5/1450:1453 | Double sheared Not in a motif group | geometric IL_3D0U_002 IL_09705.9 | |
| IL_6ZMI_054 | 1/L5/1467:1468, 1/L5/1496:1498 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_37497.3 | |
| IL_6ZMI_055 | 1/L5/1474:1476, 1/L5/1489:1490 | Single stack bend Not in a motif group | geometric IL_7A0S_005 IL_76488.2 | |
| IL_6ZMI_056 | 1/L5/1479:1480, 1/L5/1484:1486 | No text annotation Not in a motif group | ||
| IL_6ZMI_057 | 1/L5/1520:1522, 1/L5/1655:1657 | No text annotation Not in a motif group | geometric IL_5TBW_027 IL_95997.1 | |
| IL_6ZMI_058 | 1/L5/1522:1526, 1/L5/1648:1655 | No text annotation Not in a motif group | homologous IL_5TBW_028 IL_17470.6 | |
| IL_6ZMI_059 | 1/L5/1545:1546, 1/L5/1612:1614 | Single bulged A Not in a motif group | geometric IL_4WF9_022 IL_37497.3 | |
| IL_6ZMI_060 | 1/L5/1550:1551, 1/L5/1576:1578 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.3 | |
| IL_6ZMI_061 | 1/L5/1551:1555, 1/L5/1572:1576 | No text annotation Not in a motif group | homologous IL_8C3A_033 IL_56467.8 | |
| IL_6ZMI_062 | 1/L5/1586:1589, 1/L5/1605:1607 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.2 | |
| IL_6ZMI_063 | 1/L5/1590:1592, 1/L5/1603:1604 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.14 | |
| IL_6ZMI_064 | 1/L5/1624:1626, 1/L5/1636:1640 | No text annotation Not in a motif group | homologous IL_8C3A_036 IL_90991.6 | |
| IL_6ZMI_065 | 1/L5/1671:1673, 1/L5/1682:1684 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
| IL_6ZMI_066 | 1/L5/1686:1688, 1/L5/1848:1851 | No text annotation Not in a motif group | ||
| IL_6ZMI_068 | 1/L5/1723:1725, 1/L5/1838:1839 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.3 | |
| IL_6ZMI_069 | 1/L5/1732:1737, 1/L5/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_6ZMI_070 | 1/L5/1737:1738, 1/L5/1790:1792 | Minor groove platform Not in a motif group | geometric IL_6DLR_003 IL_42622.2 | |
| IL_6ZMI_071 | 1/L5/1739:1744, 1/L5/1786:1789 | C-loop Not in a motif group | homologous IL_5TBW_040 IL_02509.1 | |
| IL_6ZMI_072 | 1/L5/1746:1749, 1/L5/1781:1784 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_041 IL_30621.3 | |
| IL_6ZMI_073 | 1/L5/1749:1751, 1/L5/1779:1781 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_6ZMI_074 | 1/L5/1753:1756, 1/L5/1775:1777 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_18471.2 | |
| IL_6ZMI_075 | 1/L5/1756:1759, 1/L5/1773:1775 | Isolated cWH basepair Not in a motif group | geometric IL_1L9A_007 IL_95997.1 | |
| IL_6ZMI_076 | 1/L5/1814:1816, 1/L5/1823:1824 | Single bulged A Not in a motif group | homologous IL_5TBW_045 IL_37497.3 | |
| IL_6ZMI_077 | 1/L5/1858:1860, 1/L5/1874:1876 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_6ZMI_078 | 1/L5/1861:1863, 1/L5/1871:1873 | No text annotation Not in a motif group | homologous IL_8C3A_050 IL_52767.2 | |
| IL_6ZMI_079 | 1/L5/1905:1909, 1/L5/2067:2071 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_6ZMI_080 | 1/L5/1911:1918, 1/L5/2064:2065 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.7 | |
| IL_6ZMI_081 | 1/L5/1918:1920, 1/L5/2063:2064 | No text annotation Not in a motif group | ||
| IL_6ZMI_082 | 1/L5/1920:1922, 1/L5/2062:2063 | No text annotation Not in a motif group | ||
| IL_6ZMI_083 | 1/L5/1926:1933, 1/L5/2053:2058 | No text annotation Not in a motif group | homologous IL_8C3A_054 IL_27086.1 | |
| IL_6ZMI_084 | 1/L5/1933:1944, 1/L5/2038:2053 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_6ZMI_085 | 1/L5/1946:1948, 1/L5/2035:2036 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.14 | |
| IL_6ZMI_086 | 1/L5/1957:1965, 1/L5/2022:2026 | No text annotation Not in a motif group | homologous IL_8C3A_057 IL_90538.4 | |
| IL_6ZMI_087 | 1/L5/1973:1977, 1/L5/1989:1993 | No text annotation Not in a motif group | homologous IL_8C3A_058 IL_30542.3 | |
| IL_6ZMI_088 | 1/L5/1978:1982, 1/L5/1987:1988 | No text annotation Not in a motif group | ||
| IL_6ZMI_089 | 1/L5/2001:2005, 1/L5/2014:2016 | Major groove platform with extra cWW Not in a motif group | geometric IL_1MMS_002 IL_05564.2 | |
| IL_6ZMI_090 | 1/L5/2083:2085, 1/L5/2272:2273 | Single bulged C Not in a motif group | geometric IL_4C7O_003 IL_61258.12 | |
| IL_6ZMI_091 | 1/L5/2290:2292, 1/L5/2342:2345 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_52767.2 | |
| IL_6ZMI_092 | 1/L5/2299:2301, 1/L5/2334:2335 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.3 | |
| IL_6ZMI_093 | 1/L5/2302:2309, 1/L5/2329:2333 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_6ZMI_094 | 1/L5/2312:2314, 1/L5/2325:2326 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.3 | |
| IL_6ZMI_095 | 1/L5/2358:2364, 1/L5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.2 | |
| IL_6ZMI_096 | 1/L5/2415:2419, 1/L5/2427:2429 | C-loop Not in a motif group | geometric IL_7A0S_047 IL_37712.2 | |
| IL_6ZMI_097 | 1/L5/2446:2450, 1/L5/2509:2514 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_6ZMI_098 | 1/L5/2477:2479, 1/L5/2499:2500 | No text annotation Not in a motif group | ||
| IL_6ZMI_099 | 1/L5/2483:2487, 1/L5/2492:2495 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_30621.3 | |
| IL_6ZMI_100 | 1/L5/2542:2547, 1/L5/2772:2774 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_282 IL_82068.2 | |
| IL_6ZMI_101 | 1/L5/2549:2550, 1/L5/2768:2770 | Single bulged U Not in a motif group | geometric IL_2A64_002 IL_83039.14 | |
| IL_6ZMI_102 | 1/L5/2589:2593, 1/L5/2752:2756 | Triple sheared Not in a motif group | geometric IL_7RQB_075 IL_56467.8 | |
| IL_6ZMI_103 | 1/L5/2613:2614, 1/L5/2724:2726 | Single bulged C Not in a motif group | homologous IL_5TBW_069 IL_61258.12 | |
| IL_6ZMI_104 | 1/L5/2614:2615, 1/L5/2722:2724 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_6ZMI_105 | 1/L5/2646:2648, 1/L5/2685:2688 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4V9F_076 IL_38958.7 | |
| IL_6ZMI_106 | 1/L5/2651:2653, 1/L5/2681:2682 | Single bulged G Not in a motif group | geometric IL_3NDB_004 IL_00225.3 | |
| IL_6ZMI_107 | 1/L5/2656:2662, 1/L5/2672:2678 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_6ZMI_108 | 1/L5/2832:2838, 1/L5/3850:3853 | No text annotation Not in a motif group | homologous IL_8C3A_080 IL_49460.2 | |
| IL_6ZMI_109 | 1/L5/2844:2846, 1/L5/3842:3844 | No text annotation Not in a motif group | homologous IL_8C3A_081 IL_54997.7 | |
| IL_6ZMI_110 | 1/L5/2847:2850, 1/L5/3840:3841 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_50694.2 | |
| IL_6ZMI_111 | 1/L5/2850:2855, 1/L5/3837:3840 | No text annotation Not in a motif group | homologous IL_8C3A_083 IL_82842.2 | |
| IL_6ZMI_112 | 1/L5/2867:2872, 1/L5/2877:2883 | No text annotation Not in a motif group | homologous IL_8C3A_084 IL_65969.2 | |
| IL_6ZMI_113 | 1/L5/2889:2891, 1/L5/3610:3612 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_6ZMI_114 | 1/L5/2896:2897, 1/L5/3602:3605 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_6ZMI_115 | 1/L5/2901:2905, 1/L5/3589:3598 | No text annotation Not in a motif group | ||
| IL_6ZMI_116 | 1/L5/2905:2906, 1/L5/3584:3589 | No text annotation Not in a motif group | ||
| IL_6ZMI_117 | 1/L5/3632:3633, 1/L5/3827:3829 | Single bulged A Not in a motif group | homologous IL_5TBW_082 IL_37497.3 | |
| IL_6ZMI_118 | 1/L5/3660:3665, 1/L5/3677:3684 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_6ZMI_119 | 1/L5/3700:3703, 1/L5/3749:3750 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.1 | |
| IL_6ZMI_120 | 1/L5/3704:3705, 1/L5/3745:3748 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_085 IL_16396.2 | |
| IL_6ZMI_121 | 1/L5/3708:3710, 1/L5/3741:3742 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6ZMI_122 | 1/L5/3710:3714, 1/L5/3739:3741 | No text annotation Not in a motif group | homologous IL_8C3A_092 IL_65006.1 | |
| IL_6ZMI_123 | 1/L5/3715:3721, 1/L5/3732:3738 | No text annotation Not in a motif group | homologous IL_8C3A_093 IL_36973.6 | |
| IL_6ZMI_124 | 1/L5/3780:3781, 1/L5/3811:3814 | No text annotation Not in a motif group | homologous IL_8C3A_094 IL_59677.2 | |
| IL_6ZMI_125 | 1/L5/3781:3792, 1/L5/3808:3811 | No text annotation Not in a motif group | geometric IL_5TBW_090 IL_81589.2 | |
| IL_6ZMI_126 | 1/L5/3895:3898, 1/L5/4563:4565 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_63450.2 | |
| IL_6ZMI_127 | 1/L5/3900:3902, 1/L5/4558:4561 | No text annotation Not in a motif group | homologous IL_8C3A_097 IL_54678.5 | |
| IL_6ZMI_128 | 1/L5/3913:3915, 1/L5/4388:4389 | Single bulged U Not in a motif group | homologous IL_5TBW_093 IL_83039.14 | |
| IL_6ZMI_129 | 1/L5/3916:3917, 1/L5/4384:4387 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_6ZMI_130 | 1/L5/3927:3929, 1/L5/4181:4184 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.7 | |
| IL_6ZMI_131 | 1/L5/3948:3951, 1/L5/4060:4065 | No text annotation Not in a motif group | ||
| IL_6ZMI_132 | 1/L5/4082:4088, 1/L5/4161:4164 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_74114.1 | |
| IL_6ZMI_133 | 1/L5/4191:4192, 1/L5/4202:4204 | No text annotation Not in a motif group | homologous IL_8C3A_107 IL_69996.1 | |
| IL_6ZMI_134 | 1/L5/4243:4245, 1/L5/4263:4267 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_099 IL_38958.7 | |
| IL_6ZMI_135 | 1/L5/4291:4293, 1/L5/4317:4318 | Single bulged A Not in a motif group | geometric IL_5WWT_001 IL_37497.3 | |
| IL_6ZMI_136 | 1/L5/4295:4298, 1/L5/4312:4315 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.3 | |
| IL_6ZMI_137 | 1/L5/4347:4350, 1/L5/4364:4365 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_6ZMI_138 | 1/L5/4400:4401, 1/L5/4442:4444 | Major groove platform Not in a motif group | geometric IL_5TBW_102 IL_27635.2 | |
| IL_6ZMI_139 | 1/L5/4401:4403, 1/L5/4440:4442 | No text annotation Not in a motif group | homologous IL_5TBW_103 IL_95997.1 | |
| IL_6ZMI_140 | 1/L5/4403:4405, 1/L5/4439:4440 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_6ZMI_141 | 1/L5/4405:4407, 1/L5/4435:4439 | No text annotation Not in a motif group | geometric IL_5TBW_105 IL_92788.2 | |
| IL_6ZMI_142 | 1/L5/4412:4416, 1/L5/4426:4430 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_6ZMI_143 | 1/L5/4453:4454, 1/L5/4526:4528 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_6ZMI_144 | 1/L5/4456:4458, 1/L5/4520:4524 | No text annotation Not in a motif group | homologous IL_8C3A_116 IL_90933.2 | |
| IL_6ZMI_145 | 1/L5/4458:4459, 1/L5/4517:4520 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_71530.2 | |
| IL_6ZMI_146 | 1/L5/4466:4468, 1/L5/4489:4491 | No text annotation Not in a motif group | homologous IL_5TBW_110 IL_51629.2 | |
| IL_6ZMI_147 | 1/L5/4468:4470, 1/L5/4485:4489 | No text annotation Not in a motif group | ||
| IL_6ZMI_148 | 1/L5/4495:4497, 1/L5/4503:4505 | No text annotation Not in a motif group | homologous IL_8C3A_120 IL_95997.1 | |
| IL_6ZMI_149 | 1/L5/4537:4538, 1/L5/4547:4549 | Single bulged A Not in a motif group | homologous IL_5TBW_113 IL_37497.3 | |
| IL_6ZMI_150 | 1/L5/4580:4582, 1/L5/4721:4723 | No text annotation Not in a motif group | geometric IL_3ICQ_003 IL_51629.2 | |
| IL_6ZMI_151 | 1/L5/4582:4585, 1/L5/4717:4721 | No text annotation Not in a motif group | homologous IL_8C3A_123 IL_09705.9 | |
| IL_6ZMI_152 | 1/L5/4590:4592, 1/L5/4618:4620 | No text annotation Not in a motif group | homologous IL_5TBW_115 IL_95997.1 | |
| IL_6ZMI_153 | 1/L5/4596:4603, 1/L5/4608:4614 | No text annotation Not in a motif group | homologous IL_8C3A_125 IL_04346.7 | |
| IL_6ZMI_154 | 1/L5/4624:4629, 1/L5/4669:4673 | No text annotation Not in a motif group | ||
| IL_6ZMI_155 | 1/L5/4632:4637, 1/L5/4662:4666 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_6ZMI_156 | 1/L5/4638:4640, 1/L5/4659:4661 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_012 IL_51629.2 | |
| IL_6ZMI_157 | 1/L5/4641:4642, 1/L5/4655:4658 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_71530.2 | |
| IL_6ZMI_158 | 1/L5/4680:4685, 1/L5/4705:4710 | UAA/GAN with extra cWW Not in a motif group | geometric IL_5J7L_350 IL_49767.5 | |
| IL_6ZMI_159 | 1/L5/4740:4742, 1/L5/4958:4959 | No text annotation Not in a motif group | ||
| IL_6ZMI_160 | 1/L5/4743:4746, 1/L5/4954:4957 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.3 | |
| IL_6ZMI_161 | 1/L5/4749:4751, 1/L5/4948:4951 | No text annotation Not in a motif group | ||
| IL_6ZMI_162 | 1/L5/4756:4765, 1/L5/4869:4877 | No text annotation Not in a motif group | ||
| IL_6ZMI_163 | 1/L5/4769:4771, 1/L5/4863:4865 | No text annotation Not in a motif group | geometric IL_5J7L_326 IL_95997.1 | |
| IL_6ZMI_164 | 1/L5/4774:4776, 1/L5/4859:4860 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6ZMI_165 | 1/L5/4885:4889, 1/L5/4930:4934 | No text annotation Not in a motif group | ||
| IL_6ZMI_166 | 1/L5/4890:4896, 1/L5/4924:4929 | No text annotation Not in a motif group | ||
| IL_6ZMI_167 | 1/L5/4899:4901, 1/L5/4920:4921 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.12 | |
| IL_6ZMI_168 | 1/L5/4972:4975, 1/L5/4983:4986 | No text annotation Not in a motif group | homologous IL_8C3A_135 IL_30621.3 | |
| IL_6ZMI_169 | 1/L5/4992:4994, 1/L5/5057:5059 | No text annotation Not in a motif group | geometric IL_3HHN_004 IL_95997.1 | |
| IL_6ZMI_170 | 1/L5/4996:4997, 1/L5/5053:5055 | Single bulged C Not in a motif group | geometric IL_1KUQ_002 IL_61258.12 | |
| IL_6ZMI_171 | 1/L5/5000:5002, 1/L5/5045:5050 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_90933.2 | |
| IL_6ZMI_172 | 1/L5/5003:5009, 1/L5/5039:5044 | No text annotation Not in a motif group | ||
| IL_6ZMI_173 | 1/L5/5012:5014, 1/L5/5035:5036 | No text annotation Not in a motif group | homologous IL_8C3A_140 IL_83039.14 | |
| IL_6ZMI_174 | 1/L5/5014:5017, 1/L5/5032:5035 | No text annotation Not in a motif group | homologous IL_8C3A_141 IL_09705.9 | |
| IL_6ZMI_175 | 1/L7/15:16, 1/L7/62:64 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.3 | |
| IL_6ZMI_176 | 1/L7/21:27, 1/L7/52:57 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_6ZMI_177 | 1/L7/28:29, 1/L7/48:51 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_6ZMI_178 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
| IL_6ZMI_179 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_6ZMI_180 | 1/L7/79:81, 1/L7/95:97 | No text annotation Not in a motif group | geometric IL_4V88_470 IL_51629.2 | |
| IL_6ZMI_181 | 1/L7/82:85, 1/L7/92:94 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_6ZMI_182 | 1/L8/64:66, 1/L8/92:95 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_145 IL_82068.2 | |
| IL_6ZMI_183 | 1/S2/23:25, 1/S2/649:651 | No text annotation Not in a motif group | geometric IL_3MEI_002 IL_95997.1 | |
| IL_6ZMI_184 | 1/S2/34:36, 1/S2/519:521 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_6ZMI_185 | 1/S2/37:40, 1/S2/514:518 | Double sheared Not in a motif group | geometric IL_4WF9_016 IL_09705.9 | |
| IL_6ZMI_186 | 1/S2/41:47, 1/S2/479:481 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_6ZMI_187 | 1/S2/49:51, 1/S2/476:477 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_6ZMI_188 | 1/S2/57:62, 1/S2/86:88 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_6ZMI_189 | 1/S2/63:68, 1/S2/81:85 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_6ZMI_190 | 1/S2/108:110, 1/S2/351:353 | No text annotation Not in a motif group | geometric IL_1ZX7_004 IL_95997.1 | |
| IL_6ZMI_191 | 1/S2/110:112, 1/S2/349:351 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_6ZMI_192 | 1/S2/112:115, 1/S2/348:349 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_6ZMI_193 | 1/S2/116:121, 1/S2/343:347 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_6ZMI_194 | 1/S2/123:124, 1/S2/339:341 | Minor groove platform Not in a motif group | geometric IL_4UYK_001 IL_93353.1 | |
| IL_6ZMI_196 | 1/S2/145:151, 1/S2/167:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_6ZMI_197 | 1/S2/152:154, 1/S2/164:166 | Isolated cWH basepair Not in a motif group | geometric IL_6RA4_002 IL_51629.2 | |
| IL_6ZMI_198 | 1/S2/188:192, 1/S2/207:211 | Triple sheared Not in a motif group | geometric IL_5J7L_274 IL_56467.8 | |
| IL_6ZMI_199 | 1/S2/216:219, 1/S2/302:309 | No text annotation Not in a motif group | ||
| IL_6ZMI_201 | 1/S2/312:314, 1/S2/336:337 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.3 | |
| IL_6ZMI_202 | 1/S2/317:319, 1/S2/332:333 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_6ZMI_203 | 1/S2/321:323, 1/S2/329:330 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_6ZMI_204 | 1/S2/359:364, 1/S2/396:403 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6ZMI_205 | 1/S2/366:371, 1/S2/393:394 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_6ZMI_206 | 1/S2/411:413, 1/S2/424:429 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_6ZMI_207 | 1/S2/437:439, 1/S2/454:456 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_6ZMI_208 | 1/S2/459:461, 1/S2/468:470 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_6ZMI_209 | 1/S2/487:489, 1/S2/511:512 | Single bulged U Not in a motif group | geometric IL_4V88_407 IL_83039.14 | |
| IL_6ZMI_210 | 1/S2/491:495, 1/S2/508:509 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6ZMI_211 | 1/S2/495:496, 1/S2/506:508 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.3 | |
| IL_6ZMI_212 | 1/S2/527:529, 1/S2/557:558 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_76488.2 | |
| IL_6ZMI_213 | 1/S2/529:530, 1/S2/555:557 | No text annotation Not in a motif group | ||
| IL_6ZMI_214 | 1/S2/530:531, 1/S2/553:555 | Single stack bend Not in a motif group | geometric IL_4V9F_081 IL_76488.2 | |
| IL_6ZMI_215 | 1/S2/531:534, 1/S2/549:553 | No text annotation Not in a motif group | ||
| IL_6ZMI_216 | 1/S2/535:537, 1/S2/546:548 | Multiple bulged bases Not in a motif group | geometric IL_5XWP_001 IL_44546.1 | |
| IL_6ZMI_217 | 1/S2/566:569, 1/S2/581:584 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_001 IL_30621.3 | |
| IL_6ZMI_218 | 1/S2/599:606, 1/S2/636:637 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4V88_413 IL_15861.7 | |
| IL_6ZMI_219 | 1/S2/606:608, 1/S2/635:636 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.14 | |
| IL_6ZMI_220 | 1/S2/611:617, 1/S2/624:632 | No text annotation Not in a motif group | homologous IL_8C3A_425 IL_55871.1 | |
| IL_6ZMI_221 | 1/S2/663:665, 1/S2/1162:1164 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_6ZMI_222 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation Not in a motif group | geometric IL_4LFB_022 IL_69996.1 | |
| IL_6ZMI_223 | 1/S2/673:675, 1/S2/1030:1032 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6ZMI_224 | 1/S2/676:680, 1/S2/1025:1029 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_6ZMI_225 | 1/S2/802:803, 1/S2/860:863 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_6ZMI_226 | 1/S2/805:807, 1/S2/856:858 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_6ZMI_227 | 1/S2/807:815, 1/S2/849:856 | No text annotation Not in a motif group | homologous IL_4V88_425 IL_69091.1 | |
| IL_6ZMI_228 | 1/S2/874:876, 1/S2/910:912 | No text annotation Not in a motif group | geometric IL_5AOX_001 IL_95997.1 | |
| IL_6ZMI_229 | 1/S2/877:879, 1/S2/907:909 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_6ZMI_230 | 1/S2/922:923, 1/S2/1019:1022 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_428 IL_50694.2 | |
| IL_6ZMI_231 | 1/S2/925:927, 1/S2/1014:1017 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_6ZMI_232 | 1/S2/928:931, 1/S2/1010:1013 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_430 IL_30621.3 | |
| IL_6ZMI_233 | 1/S2/931:935, 1/S2/1007:1010 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.3 | |
| IL_6ZMI_234 | 1/S2/942:945, 1/S2/981:984 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.3 | |
| IL_6ZMI_235 | 1/S2/952:956, 1/S2/967:974 | Kink-turn Not in a motif group | homologous IL_4V88_434 IL_45067.2 | |
| IL_6ZMI_236 | 1/S2/1042:1047, 1/S2/1071:1073 | Other IL Not in a motif group | homologous IL_4V88_435 IL_22046.1 | |
| IL_6ZMI_237 | 1/S2/1047:1051, 1/S2/1067:1071 | tSH-tHW-tHS Not in a motif group | geometric IL_5J7L_037 IL_17136.1 | |
| IL_6ZMI_238 | 1/S2/1091:1093, 1/S2/1152:1158 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6ZMI_239 | 1/S2/1098:1101, 1/S2/1131:1134 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.3 | |
| IL_6ZMI_240 | 1/S2/1101:1103, 1/S2/1129:1131 | No text annotation Not in a motif group | geometric IL_4WF9_083 IL_95997.1 | |
| IL_6ZMI_241 | 1/S2/1108:1110, 1/S2/1123:1124 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_93353.1 | |
| IL_6ZMI_242 | 1/S2/1168:1175, 1/S2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_6ZMI_243 | 1/S2/1203:1204, 1/S2/1694:1696 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.3 | |
| IL_6ZMI_244 | 1/S2/1206:1208, 1/S2/1691:1692 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.3 | |
| IL_6ZMI_245 | 1/S2/1214:1217, 1/S2/1681:1685 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_6ZMI_246 | 1/S2/1230:1232, 1/S2/1526:1528 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_6ZMI_247 | 1/S2/1235:1236, 1/S2/1521:1523 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_6ZMI_248 | 1/S2/1270:1272, 1/S2/1510:1512 | No text annotation Not in a motif group | homologous IL_4V88_446 IL_95997.1 | |
| IL_6ZMI_249 | 1/S2/1281:1287, 1/S2/1314:1316 | No text annotation Not in a motif group | ||
| IL_6ZMI_250 | 1/S2/1287:1290, 1/S2/1309:1314 | No text annotation Not in a motif group | ||
| IL_6ZMI_251 | 1/S2/1291:1293, 1/S2/1306:1308 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_10023.1 | |
| IL_6ZMI_252 | 1/S2/1325:1327, 1/S2/1502:1503 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.14 | |
| IL_6ZMI_253 | 1/S2/1329:1333, 1/S2/1498:1500 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
| IL_6ZMI_254 | 1/S2/1333:1335, 1/S2/1492:1498 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_6ZMI_255 | 1/S2/1337:1338, 1/S2/1488:1490 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.3 | |
| IL_6ZMI_256 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_6ZMI_257 | 1/S2/1363:1365, 1/S2/1374:1375 | Minor groove platform Not in a motif group | geometric IL_4V88_454 IL_93353.1 | |
| IL_6ZMI_258 | 1/S2/1395:1399, 1/S2/1447:1450 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_002 IL_30621.3 | |
| IL_6ZMI_259 | 1/S2/1402:1405, 1/S2/1441:1444 | Minor groove platform Not in a motif group | homologous IL_4V88_456 IL_76458.1 | |
| IL_6ZMI_260 | 1/S2/1408:1409, 1/S2/1432:1438 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_6ZMI_261 | 1/S2/1412:1413, 1/S2/1427:1429 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.3 | |
| IL_6ZMI_262 | 1/S2/1537:1539, 1/S2/1594:1596 | No text annotation Not in a motif group | geometric IL_4P3T_001 IL_95997.1 | |
| IL_6ZMI_263 | 1/S2/1550:1558, 1/S2/1577:1582 | No text annotation Not in a motif group | geometric IL_5J7L_055 IL_75461.4 | |
| IL_6ZMI_264 | 1/S2/1560:1562, 1/S2/1573:1575 | No text annotation Not in a motif group | geometric IL_5TBW_016 IL_51629.2 | |
| IL_6ZMI_265 | 1/S2/1604:1610, 1/S2/1629:1635 | No text annotation Not in a motif group | ||
| IL_6ZMI_266 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_6ZMI_267 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation Not in a motif group | homologous IL_4V88_464 IL_99670.1 | |
| IL_6ZMI_268 | 1/S2/1706:1708, 1/S2/1826:1828 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_6ZMI_269 | 1/S2/1708:1711, 1/S2/1822:1826 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.3 | |
| IL_6ZMI_270 | 1/S2/1714:1716, 1/S2/1817:1819 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_6ZMI_271 | 1/S2/1717:1720, 1/S2/1813:1816 | Double sheared Not in a motif group | geometric IL_4V88_468 IL_09705.9 | |
| IL_6ZMI_272 | 1/S2/1720:1722, 1/S2/1812:1813 | Single bulged U Not in a motif group | homologous IL_4V88_469 IL_83039.14 | |
| IL_6ZMI_273 | 1/S2/1729:1731, 1/S2/1803:1805 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_6ZMI_274 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_6ZMI_275 | 1/S2/1739:1741, 1/S2/1793:1795 | UU cWW water inserted Not in a motif group | geometric IL_4E48_002 IL_95997.1 | |
| IL_6ZMI_276 | 1/S2/1742:1746, 1/S2/1788:1792 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 | |
| IL_6ZMI_277 | 1/S2/1750:1755, 1/S2/1777:1784 | No text annotation Not in a motif group | ||
| IL_6ZMI_278 | 1/S2/1755:1759, 1/S2/1772:1777 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6ZMI_048 | Minor groove platform | ||
| IL_6ZMI_067 | No text annotation | ||
| IL_6ZMI_195 | No text annotation | ||
| IL_6ZMI_200 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6ZMI_001 | 1/L5/112:116, 1/L5/155:160, 1/L5/275:278 | No text annotation Not in a motif group | ||
| J3_6ZMI_002 | 1/L5/380:387, 1/L5/414:415, 1/L8/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_6ZMI_003 | 1/L5/712:713, 1/L5/955:976, 1/L5/1278:1284 | No text annotation Not in a motif group | ||
| J3_6ZMI_004 | 1/L5/1531:1537, 1/L5/1622:1624, 1/L5/1640:1643 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_6ZMI_005 | 1/L5/1546:1548, 1/L5/1580:1584, 1/L5/1609:1612 | No text annotation Not in a motif group | homologous J3_8C3A_004 NA | |
| J3_6ZMI_006 | 1/L5/1969:1971, 1/L5/1995:2001, 1/L5/2016:2018 | No text annotation Not in a motif group | homologous J3_5TBW_007 NA | |
| J3_6ZMI_007 | 1/L5/2393:2399, 1/L5/2805:2807, 1/L5/2819:2822 | No text annotation Not in a motif group | homologous J3_8C3A_006 NA | |
| J3_6ZMI_008 | 1/L5/2402:2405, 1/L5/2785:2791, 1/L5/2800:2802 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_6ZMI_009 | 1/L5/2440:2445, 1/L5/2515:2519, 1/L5/2536:2537 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_6ZMI_010 | 1/L5/2551:2555, 1/L5/2572:2575, 1/L5/2757:2767 | No text annotation Not in a motif group | ||
| J3_6ZMI_011 | 1/L5/2575:2576, 1/L5/2585:2589, 1/L5/2756:2757 | No text annotation Not in a motif group | ||
| J3_6ZMI_012 | 1/L5/3937:3939, 1/L5/4074:4078, 1/L5/4168:4173 | No text annotation Not in a motif group | ||
| J3_6ZMI_013 | 1/L5/4241:4243, 1/L5/4267:4269, 1/L5/4278:4283 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_6ZMI_014 | 1/L5/4463:4466, 1/L5/4491:4493, 1/L5/4507:4513 | No text annotation Not in a motif group | homologous J3_5TBW_014 NA | |
| J3_6ZMI_015 | 1/L5/4970:4972, 1/L5/4986:4991, 1/L5/5060:5063 | No text annotation Not in a motif group | ||
| J3_6ZMI_016 | 1/L7/9:14, 1/L7/65:66, 1/L7/109:110 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA | |
| J3_6ZMI_017 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation Not in a motif group | ||
| J3_6ZMI_018 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation Not in a motif group | ||
| J3_6ZMI_019 | 1/S2/682:685, 1/S2/917:922, 1/S2/1022:1023 | No text annotation Not in a motif group | ||
| J3_6ZMI_020 | 1/S2/816:819, 1/S2/829:831, 1/S2/843:848 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_6ZMI_021 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_6ZMI_022 | 1/S2/1094:1096, 1/S2/1136:1140, 1/S2/1147:1151 | No text annotation Not in a motif group | ||
| J3_6ZMI_023 | 1/S2/1218:1221, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_6ZMI_024 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_6ZMI_025 | 1/S2/1237:1244, 1/S2/1255:1266, 1/S2/1516:1520 | No text annotation Not in a motif group | ||
| J3_6ZMI_026 | 1/S2/1272:1277, 1/S2/1320:1324, 1/S2/1504:1510 | No text annotation Not in a motif group | homologous J3_8C3A_041 NA | |
| J3_6ZMI_027 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_6ZMI_028 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation Not in a motif group | ||
| J3_6ZMI_029 | 1/S2/1391:1395, 1/S2/1450:1456, 1/S2/1470:1479 | No text annotation Not in a motif group | ||
| J3_6ZMI_030 | 1/S2/1532:1536, 1/S2/1597:1604, 1/S2/1635:1638 | No text annotation Not in a motif group | homologous J3_8C3A_044 NA |
Problematic loops
No problematic loops
Coloring options: