4V8J Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V8J_001 | 1/AA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_4V8J_002 | 1/AA/73:89 | No text annotation Not in a motif group | ||
| HL_4V8J_003 | 1/AA/152:157 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_4V8J_004 | 1/AA/186:191 | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_4V8J_006 | 1/AA/254:262 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_4V8J_007 | 1/AA/291:296 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_4V8J_008 | 1/AA/315:328 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4V8J_009 | 1/AA/336:343 | No text annotation Not in a motif group | ||
| HL_4V8J_010 | 1/AA/374:379 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_4V8J_011 | 1/AA/414:419 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_4V8J_012 | 1/AA/452:458 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_4V8J_013 | 1/AA/505:510 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_4V8J_014 | 1/AA/600:606 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_4V8J_015 | 1/AA/672:681 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_4V8J_016 | 1/AA/709:714 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_4V8J_017 | 1/AA/769:779 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_4V8J_018 | 1/AA/821:825 | No text annotation Not in a motif group | homologous HL_4LFB_018 HL_38927.2 | |
| HL_4V8J_019 | 1/AA/839:844 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_4V8J_020 | 1/AA/874:879 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_4V8J_021 | 1/AA/940:949 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4V8J_022 | 1/AA/990:995 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_4V8J_023 | 1/AA/1058:1063 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_4V8J_024 | 1/AA/1071:1078 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4V8J_025 | 1/AA/1110:1125 | No text annotation Not in a motif group | ||
| HL_4V8J_026 | 1/AA/1147:1152 | No text annotation Not in a motif group | ||
| HL_4V8J_027 | 1/AA/1246:1251 | GNRA Not in a motif group | geometric HL_5TBW_064 HL_42097.1 | |
| HL_4V8J_028 | 1/AA/1295:1304 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_4V8J_029 | 1/AA/1337:1348 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_4V8J_030 | 1/AA/1429:1434 | UNCG Not in a motif group | homologous HL_4LFB_031 HL_03562.2 | |
| HL_4V8J_031 | 1/AA/1492:1497 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4V8J_032 | 1/AV/13:23 | No text annotation Not in a motif group | homologous HL_5B63_003 HL_25462.2 | |
| HL_4V8J_033 | 1/AV/32:40 | No text annotation Not in a motif group | homologous HL_6CFJ_107 NA | |
| HL_4V8J_034 | 1/AV/53:63 | No text annotation Not in a motif group | homologous HL_4WSM_226 HL_22031.1 | |
| HL_4V8J_036 | 1/AW/30:40 | No text annotation Not in a motif group | homologous HL_4V7M_039 HL_36684.1 | |
| HL_4V8J_037 | 1/AW/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_6PMO_005 HL_22280.1 | |
| HL_4V8J_039 | 1/BA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_4V8J_040 | 1/BA/87:95 | No text annotation Not in a motif group | geometric HL_5TBW_022 HL_94803.1 | |
| HL_4V8J_041 | 1/BA/123:128 | No text annotation Not in a motif group | homologous HL_7A0S_003 HL_75407.1 | |
| HL_4V8J_042 | 1/BA/139:142A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_4V8J_044 | 1/BA/194:201 | No text annotation Not in a motif group | homologous HL_5J7L_139 HL_06192.2 | |
| HL_4V8J_045 | 1/BA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_4V8J_046 | 1/BA/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_4V8J_047 | 1/BA/271J:271M | No text annotation Not in a motif group | ||
| HL_4V8J_048 | 1/BA/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_4V8J_049 | 1/BA/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_4V8J_050 | 1/BA/326:336 | No text annotation Not in a motif group | ||
| HL_4V8J_051 | 1/BA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_4V8J_052 | 1/BA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_4V8J_053 | 1/BA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_4V8J_054 | 1/BA/487:493 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
| HL_4V8J_056 | 1/BA/566:575 | No text annotation Not in a motif group | homologous HL_7RQB_018 HL_89380.2 | |
| HL_4V8J_057 | 1/BA/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
| HL_4V8J_058 | 1/BA/629:634 | GNRA Not in a motif group | homologous HL_4WF9_020 HL_42097.1 | |
| HL_4V8J_059 | 1/BA/640:648 | No text annotation Not in a motif group | geometric HL_5J7L_012 HL_84085.2 | |
| HL_4V8J_060 | 1/BA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_4V8J_061 | 1/BA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_4V8J_062 | 1/BA/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
| HL_4V8J_063 | 1/BA/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_4V8J_065 | 1/BA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_4V8J_066 | 1/BA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_4V8J_069 | 1/BA/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_4V8J_070 | 1/BA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_4V8J_071 | 1/BA/1324:1330 | No text annotation Not in a motif group | homologous HL_4WF9_033 HL_46680.1 | |
| HL_4V8J_072 | 1/BA/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_4V8J_073 | 1/BA/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_4V8J_074 | 1/BA/1450A:1461 | No text annotation Not in a motif group | ||
| HL_4V8J_075 | 1/BA/1491:1499 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_4V8J_076 | 1/BA/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_4V8J_077 | 1/BA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_4V8J_078 | 1/BA/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_4V8J_079 | 1/BA/1691:1696 | UNCG Not in a motif group | homologous HL_5J7L_175 HL_03562.2 | |
| HL_4V8J_080 | 1/BA/1718:1744 | No text annotation Not in a motif group | ||
| HL_4V8J_081 | 1/BA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_4V8J_082 | 1/BA/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_4V8J_083 | 1/BA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_4V8J_084 | 1/BA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_4V8J_085 | 1/BA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_4V8J_086 | 1/BA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_4V8J_087 | 1/BA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_4V8J_088 | 1/BA/2143:2148 | No text annotation Not in a motif group | homologous HL_7RQB_051 NA | |
| HL_4V8J_089 | 1/BA/2205:2219 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
| HL_4V8J_090 | 1/BA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4V8J_091 | 1/BA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_4V8J_092 | 1/BA/2302:2314 | No text annotation Not in a motif group | ||
| HL_4V8J_093 | 1/BA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_4V8J_094 | 1/BA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_4V8J_095 | 1/BA/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
| HL_4V8J_096 | 1/BA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_4V8J_097 | 1/BA/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_06192.2 | |
| HL_4V8J_098 | 1/BA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_4V8J_099 | 1/BA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_4V8J_100 | 1/BA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_4V8J_101 | 1/BA/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_4V8J_102 | 1/BA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_4V8J_103 | 1/BA/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_4V8J_105 | 1/BA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_4V8J_106 | 1/BA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_4V8J_107 | 1/BB/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_4V8J_108 | 1/BB/86:91 | No text annotation Not in a motif group | homologous HL_7A0S_070 HL_42097.1 | |
| HL_4V8J_109 | 1/CA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_4V8J_110 | 1/CA/74:88 | No text annotation Not in a motif group | ||
| HL_4V8J_111 | 1/CA/152:157 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_4V8J_112 | 1/CA/186:191 | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_4V8J_113 | 1/CA/207:211 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_56691.2 | |
| HL_4V8J_114 | 1/CA/253:263 | No text annotation Not in a motif group | ||
| HL_4V8J_115 | 1/CA/291:296 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_4V8J_116 | 1/CA/315:328 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4V8J_117 | 1/CA/336:343 | No text annotation Not in a motif group | ||
| HL_4V8J_118 | 1/CA/374:379 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_4V8J_119 | 1/CA/414:419 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_4V8J_120 | 1/CA/452:458 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_4V8J_121 | 1/CA/505:510 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_4V8J_122 | 1/CA/600:606 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_4V8J_123 | 1/CA/672:681 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_4V8J_124 | 1/CA/709:714 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_4V8J_125 | 1/CA/769:779 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_4V8J_126 | 1/CA/821:825 | No text annotation Not in a motif group | homologous HL_4LFB_018 HL_38927.2 | |
| HL_4V8J_127 | 1/CA/839:844 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_4V8J_128 | 1/CA/874:879 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_4V8J_129 | 1/CA/940:949 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4V8J_130 | 1/CA/990:995 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_4V8J_131 | 1/CA/1058:1063 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_4V8J_132 | 1/CA/1071:1078 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4V8J_133 | 1/CA/1110:1125 | No text annotation Not in a motif group | ||
| HL_4V8J_134 | 1/CA/1147:1152 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_4V8J_135 | 1/CA/1246:1251 | No text annotation Not in a motif group | geometric HL_7A0S_068 HL_42097.1 | |
| HL_4V8J_136 | 1/CA/1295:1304 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_4V8J_137 | 1/CA/1337:1348 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_4V8J_138 | 1/CA/1429:1434 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_4V8J_139 | 1/CA/1492:1497 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4V8J_140 | 1/CV/13:23 | No text annotation Not in a motif group | homologous HL_5B63_003 HL_25462.2 | |
| HL_4V8J_141 | 1/CV/32:40 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.2 | |
| HL_4V8J_142 | 1/CV/54:62 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_1QU2_003 HL_71309.1 | |
| HL_4V8J_144 | 1/CW/29:41 | No text annotation Not in a motif group | homologous HL_6GSL_221 HL_06285.2 | |
| HL_4V8J_145 | 1/CW/50:64 | No text annotation Not in a motif group | ||
| HL_4V8J_147 | 1/DA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_4V8J_148 | 1/DA/87:95 | No text annotation Not in a motif group | geometric HL_5TBW_022 HL_94803.1 | |
| HL_4V8J_149 | 1/DA/123:128 | No text annotation Not in a motif group | homologous HL_7A0S_003 HL_75407.1 | |
| HL_4V8J_150 | 1/DA/139:142A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_4V8J_152 | 1/DA/194:201 | No text annotation Not in a motif group | homologous HL_5J7L_139 HL_06192.2 | |
| HL_4V8J_153 | 1/DA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_4V8J_154 | 1/DA/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_4V8J_155 | 1/DA/271J:271M | No text annotation Not in a motif group | ||
| HL_4V8J_156 | 1/DA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_4V8J_157 | 1/DA/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_4V8J_158 | 1/DA/326:336 | No text annotation Not in a motif group | ||
| HL_4V8J_159 | 1/DA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_4V8J_160 | 1/DA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_4V8J_161 | 1/DA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_4V8J_162 | 1/DA/487:493 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
| HL_4V8J_164 | 1/DA/566:575 | No text annotation Not in a motif group | homologous HL_7RQB_018 HL_89380.2 | |
| HL_4V8J_165 | 1/DA/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
| HL_4V8J_166 | 1/DA/629:634 | GNRA Not in a motif group | homologous HL_4WF9_020 HL_42097.1 | |
| HL_4V8J_167 | 1/DA/640:648 | No text annotation Not in a motif group | geometric HL_5J7L_012 HL_84085.2 | |
| HL_4V8J_168 | 1/DA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_4V8J_169 | 1/DA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_4V8J_170 | 1/DA/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
| HL_4V8J_171 | 1/DA/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_4V8J_172 | 1/DA/884:892 | No text annotation Not in a motif group | ||
| HL_4V8J_173 | 1/DA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_4V8J_174 | 1/DA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_4V8J_176 | 1/DA/1170:1179 | No text annotation Not in a motif group | ||
| HL_4V8J_177 | 1/DA/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_4V8J_178 | 1/DA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_4V8J_179 | 1/DA/1324:1330 | No text annotation Not in a motif group | homologous HL_4WF9_033 HL_46680.1 | |
| HL_4V8J_180 | 1/DA/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_4V8J_181 | 1/DA/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_4V8J_182 | 1/DA/1450A:1461 | No text annotation Not in a motif group | ||
| HL_4V8J_183 | 1/DA/1491:1499 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_4V8J_184 | 1/DA/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_4V8J_185 | 1/DA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_4V8J_186 | 1/DA/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_4V8J_187 | 1/DA/1691:1696 | UNCG Not in a motif group | homologous HL_5J7L_175 HL_03562.2 | |
| HL_4V8J_188 | 1/DA/1718:1744 | No text annotation Not in a motif group | ||
| HL_4V8J_189 | 1/DA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_4V8J_190 | 1/DA/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_4V8J_191 | 1/DA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_4V8J_192 | 1/DA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_4V8J_193 | 1/DA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_4V8J_194 | 1/DA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_4V8J_195 | 1/DA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_4V8J_196 | 1/DA/2143:2148 | No text annotation Not in a motif group | homologous HL_7RQB_051 NA | |
| HL_4V8J_197 | 1/DA/2205:2219 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
| HL_4V8J_198 | 1/DA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4V8J_199 | 1/DA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_4V8J_200 | 1/DA/2302:2314 | No text annotation Not in a motif group | ||
| HL_4V8J_201 | 1/DA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_4V8J_202 | 1/DA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_4V8J_203 | 1/DA/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
| HL_4V8J_204 | 1/DA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_4V8J_205 | 1/DA/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_06192.2 | |
| HL_4V8J_206 | 1/DA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_4V8J_207 | 1/DA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_4V8J_208 | 1/DA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_4V8J_209 | 1/DA/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_4V8J_210 | 1/DA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_4V8J_211 | 1/DA/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_4V8J_213 | 1/DA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_4V8J_214 | 1/DA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_4V8J_215 | 1/DB/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_4V8J_216 | 1/DB/86:91 | No text annotation Not in a motif group | homologous HL_7A0S_070 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V8J_005 | No text annotation | ||
| HL_4V8J_035 | No text annotation | ||
| HL_4V8J_038 | tRNA anticodon loop | ||
| HL_4V8J_043 | No text annotation | ||
| HL_4V8J_055 | No text annotation | ||
| HL_4V8J_064 | No text annotation | ||
| HL_4V8J_067 | No text annotation | ||
| HL_4V8J_068 | No text annotation | ||
| HL_4V8J_104 | No text annotation | ||
| HL_4V8J_143 | No text annotation | ||
| HL_4V8J_146 | tRNA anticodon loop | ||
| HL_4V8J_151 | No text annotation | ||
| HL_4V8J_163 | No text annotation | ||
| HL_4V8J_175 | No text annotation | ||
| HL_4V8J_212 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V8J_001 | 1/AA/30:32, 1/AA/535:536 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_4V8J_002 | 1/AA/44:45, 1/AA/391:393 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_4V8J_003 | 1/AA/47:52, 1/AA/354:356 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_4V8J_004 | 1/AA/54:56, 1/AA/351:352 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_4V8J_005 | 1/AA/63:66, 1/AA/96:97 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_4V8J_006 | 1/AA/67:69, 1/AA/93:95 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_4V8J_007 | 1/AA/122:125, 1/AA/226:227 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_4V8J_008 | 1/AA/126:130, 1/AA/222:225 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_4V8J_009 | 1/AA/142:147, 1/AA/162:168 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_4V8J_010 | 1/AA/180:182, 1/AA/195:197 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_4V8J_011 | 1/AA/237:242, 1/AA/272:279 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_4V8J_012 | 1/AA/244:247, 1/AA/269:270 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_4V8J_013 | 1/AA/287:288, 1/AA/299:303 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_4V8J_014 | 1/AA/362:364, 1/AA/387:388 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.13 | |
| IL_4V8J_015 | 1/AA/366:370, 1/AA/384:385 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_4V8J_016 | 1/AA/370:371, 1/AA/382:384 | Single bulged G Not in a motif group | geometric IL_4LFB_016 IL_00225.2 | |
| IL_4V8J_017 | 1/AA/404:411, 1/AA/422:428 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_4V8J_018 | 1/AA/440:444, 1/AA/467:472 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_4V8J_019 | 1/AA/444:449, 1/AA/461:467 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
| IL_4V8J_020 | 1/AA/487:494, 1/AA/523:524 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_4V8J_021 | 1/AA/498:504, 1/AA/511:519 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4V8J_022 | 1/AA/552:558, 1/AA/857:858 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_4V8J_023 | 1/AA/563:567, 1/AA/740:744 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_4V8J_024 | 1/AA/577:579, 1/AA/627:628 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_4V8J_025 | 1/AA/580:581, 1/AA/623:626 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_4V8J_026 | 1/AA/588:595, 1/AA/611:616 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_4V8J_027 | 1/AA/637:638, 1/AA/734:737 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_4V8J_028 | 1/AA/640:641, 1/AA/730:732 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_4V8J_029 | 1/AA/645:649, 1/AA/723:726 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_4V8J_030 | 1/AA/656:661, 1/AA/695:700 | No text annotation Not in a motif group | homologous IL_5J7L_034 IL_04668.1 | |
| IL_4V8J_031 | 1/AA/666:671, 1/AA/682:690 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4V8J_032 | 1/AA/757:761, 1/AA/787:788 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
| IL_4V8J_033 | 1/AA/762:766, 1/AA/782:786 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_4V8J_034 | 1/AA/864:871, 1/AA/882:887 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4V8J_035 | 1/AA/899:900, 1/AA/1375:1377 | Single bulged A Not in a motif group | geometric IL_5J7L_039 IL_37497.2 | |
| IL_4V8J_036 | 1/AA/900:902, 1/AA/1373:1375 | No text annotation Not in a motif group | geometric IL_5D0B_001 IL_95997.1 | |
| IL_4V8J_037 | 1/AA/902:904, 1/AA/1372:1373 | Single bulged G Not in a motif group | geometric IL_4LFB_036 IL_00225.2 | |
| IL_4V8J_038 | 1/AA/910:912, 1/AA/1362:1366 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_4V8J_039 | 1/AA/929:931, 1/AA/1207:1210 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4WF9_003 IL_65006.1 | |
| IL_4V8J_040 | 1/AA/970:977, 1/AA/1023:1027 | No text annotation Not in a motif group | ||
| IL_4V8J_041 | 1/AA/977:985, 1/AA/1000:1023 | No text annotation Not in a motif group | ||
| IL_4V8J_042 | 1/AA/1030:1032, 1/AA/1189:1190 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_4V8J_043 | 1/AA/1034:1038, 1/AA/1185:1187 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_4V8J_044 | 1/AA/1039:1040, 1/AA/1180:1184 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_4V8J_045 | 1/AA/1042:1043, 1/AA/1176:1178 | Single bulged U Not in a motif group | geometric IL_6CZR_156 IL_83039.13 | |
| IL_4V8J_046 | 1/AA/1043:1045, 1/AA/1174:1176 | No text annotation Not in a motif group | homologous IL_4LFB_047 IL_95997.1 | |
| IL_4V8J_047 | 1/AA/1106:1110, 1/AA/1125:1131 | No text annotation Not in a motif group | homologous IL_4LFB_048 IL_85222.1 | |
| IL_4V8J_048 | 1/AA/1228:1234, 1/AA/1265:1271 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_4V8J_049 | 1/AA/1236:1240, 1/AA/1257:1263 | No text annotation Not in a motif group | ||
| IL_4V8J_050 | 1/AA/1240:1243, 1/AA/1254:1257 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.9 | |
| IL_4V8J_052 | 1/AA/1284:1289, 1/AA/1310:1315 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_4V8J_053 | 1/AA/1381:1383, 1/AA/1478:1481 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
| IL_4V8J_054 | 1/AA/1383:1386, 1/AA/1474:1478 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4V8J_055 | 1/AA/1387:1389, 1/AA/1471:1473 | UU cWW Not in a motif group | geometric IL_4ZC7_004 IL_95997.1 | |
| IL_4V8J_056 | 1/AA/1389:1391, 1/AA/1468:1471 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_4V8J_057 | 1/AA/1394:1396, 1/AA/1463:1465 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_4V8J_058 | 1/AA/1398:1401, 1/AA/1458:1461 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_4V8J_059 | 1/AA/1413:1417, 1/AA/1443:1446 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.1 | |
| IL_4V8J_060 | 1/AA/1417:1419, 1/AA/1441:1443 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_4V8J_061 | 1/AA/1422:1427, 1/AA/1436:1438 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.2 | |
| IL_4V8J_065 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_4V8J_066 | 1/BA/36:37, 1/BA/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_4V8J_067 | 1/BA/42:43, 1/BA/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
| IL_4V8J_068 | 1/BA/81:85, 1/BA/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_4V8J_069 | 1/BA/183:184, 1/BA/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_4V8J_070 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
| IL_4V8J_071 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_4V8J_072 | 1/BA/271I:271J, 1/BA/271M:271O | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_4V8J_073 | 1/BA/272D:272E, 1/BA/363E:364 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_27635.1 | |
| IL_4V8J_075 | 1/BA/280:284, 1/BA/357:360 | tSH-tHW Not in a motif group | geometric IL_7RQB_011 IL_04059.1 | |
| IL_4V8J_076 | 1/BA/287:290, 1/BA/350:354 | No text annotation Not in a motif group | ||
| IL_4V8J_077 | 1/BA/293:295, 1/BA/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_4V8J_078 | 1/BA/481:484, 1/BA/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
| IL_4V8J_079 | 1/BA/537:539, 1/BA/554:556 | No text annotation Not in a motif group | geometric IL_4V88_424 IL_95997.1 | |
| IL_4V8J_080 | 1/BA/564:566, 1/BA/575:577 | No text annotation Not in a motif group | geometric IL_4WF9_017 IL_95997.1 | |
| IL_4V8J_081 | 1/BA/606:610, 1/BA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_4V8J_082 | 1/BA/672:674, 1/BA/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_4V8J_083 | 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_4WF9_021 IL_17470.6 | |
| IL_4V8J_084 | 1/BA/697:698, 1/BA/763:765 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_37497.2 | |
| IL_4V8J_085 | 1/BA/702:703, 1/BA/728:730 | Single bulged G Not in a motif group | geometric IL_7A0S_017 IL_00225.2 | |
| IL_4V8J_086 | 1/BA/703:707, 1/BA/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_4V8J_087 | 1/BA/738:741, 1/BA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_4V8J_088 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.6 | |
| IL_4V8J_089 | 1/BA/837:838, 1/BA/940:942 | Single stack bend Not in a motif group | homologous IL_5J7L_266 IL_92001.1 | |
| IL_4V8J_090 | 1/BA/844:846, 1/BA/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
| IL_4V8J_091 | 1/BA/846:850, 1/BA/927:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 IL_94165.1 | |
| IL_4V8J_093 | 1/BA/858:862, 1/BA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7RQB_027 IL_38862.1 | |
| IL_4V8J_094 | 1/BA/862:863, 1/BA/913:915 | Minor groove platform Not in a motif group | homologous IL_4WF9_032 IL_42622.2 | |
| IL_4V8J_095 | 1/BA/864:868, 1/BA/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_4V8J_096 | 1/BA/870:873, 1/BA/904:907 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_402D_001 IL_30621.2 | |
| IL_4V8J_097 | 1/BA/875:879, 1/BA/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_4V8J_098 | 1/BA/880:881, 1/BA/895:897 | Single bulged A Not in a motif group | homologous IL_7RQB_033 IL_37497.2 | |
| IL_4V8J_099 | 1/BA/952:954, 1/BA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_4V8J_100 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_4V8J_101 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
| IL_4V8J_102 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.7 | |
| IL_4V8J_103 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U Not in a motif group | homologous IL_7RQB_038 IL_83039.13 | |
| IL_4V8J_104 | 1/BA/1018:1024, 1/BA/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_4V8J_105 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_4V8J_106 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_4V8J_107 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7A0S_041 IL_52767.2 | |
| IL_4V8J_108 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_4V8J_109 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_4V8J_110 | 1/BA/1219:1221, 1/BA/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_4V8J_111 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_4V8J_112 | 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_4V8J_113 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_4V8J_114 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_4V8J_115 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_4WF9_052 IL_17136.1 | |
| IL_4V8J_116 | 1/BA/1415:1416, 1/BA/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_4V8J_117 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_4V8J_118 | 1/BA/1433:1435, 1/BA/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_4V8J_119 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_4V8J_121 | 1/BA/1469:1473, 1/BA/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_4V8J_122 | 1/BA/1481:1482, 1/BA/1506:1510 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_4V8J_124 | 1/BA/1488:1491, 1/BA/1499:1501 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5ML7_010 IL_82068.2 | |
| IL_4V8J_125 | 1/BA/1526:1529, 1/BA/1540:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_02656.1 | |
| IL_4V8J_126 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_4V8J_127 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_4V8J_128 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_4V8J_129 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_82842.2 | |
| IL_4V8J_130 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
| IL_4V8J_131 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_4V8J_132 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_4V8J_133 | 1/BA/1837:1840, 1/BA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7A0S_066 IL_88739.1 | |
| IL_4V8J_134 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7A0S_067 IL_16396.2 | |
| IL_4V8J_135 | 1/BA/1846:1849, 1/BA/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_4V8J_136 | 1/BA/1851:1855, 1/BA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_4V8J_137 | 1/BA/1856:1860, 1/BA/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_4V8J_138 | 1/BA/1933:1934, 1/BA/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_318 IL_59677.2 | |
| IL_4V8J_139 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_4V8J_140 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_4V8J_141 | 1/BA/2054:2057, 1/BA/2611:2615 | No text annotation Not in a motif group | ||
| IL_4V8J_142 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_4V8J_143 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_4V8J_144 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_4V8J_145 | 1/BA/2085:2087, 1/BA/2232:2234 | No text annotation Not in a motif group | homologous IL_7A0S_078 IL_95997.1 | |
| IL_4V8J_146 | 1/BA/2097:2100, 1/BA/2189:2192 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.2 | |
| IL_4V8J_148 | 1/BA/2108:2110, 1/BA/2179:2181 | No text annotation Not in a motif group | homologous IL_7RQB_084 NA | |
| IL_4V8J_149 | 1/BA/2110:2120, 1/BA/2178:2179 | No text annotation Not in a motif group | geometric IL_1MZP_002 IL_45944.3 | |
| IL_4V8J_150 | 1/BA/2124:2127, 1/BA/2161:2174 | No text annotation Not in a motif group | homologous IL_3U4M_003 IL_75283.2 | |
| IL_4V8J_151 | 1/BA/2129:2137, 1/BA/2154:2159 | No text annotation Not in a motif group | ||
| IL_4V8J_152 | 1/BA/2297:2299, 1/BA/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4WF9_086 IL_38958.7 | |
| IL_4V8J_153 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_4V8J_154 | 1/BA/2401:2403, 1/BA/2414:2415 | No text annotation Not in a motif group | ||
| IL_4V8J_155 | 1/BA/2453:2454, 1/BA/2498:2500 | Single stack bend Not in a motif group | homologous IL_7RQB_091 IL_76488.2 | |
| IL_4V8J_156 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform Not in a motif group | geometric IL_7RQB_092 IL_27635.1 | |
| IL_4V8J_157 | 1/BA/2457:2459, 1/BA/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_4V8J_158 | 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_4V8J_159 | 1/BA/2466:2470, 1/BA/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_4V8J_160 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_4V8J_161 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 IL_90933.2 | |
| IL_4V8J_162 | 1/BA/2512:2513, 1/BA/2571:2574 | No text annotation Not in a motif group | geometric IL_4WF9_096 IL_71530.2 | |
| IL_4V8J_163 | 1/BA/2522:2523, 1/BA/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_4WF9_097 IL_95601.3 | |
| IL_4V8J_165 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_4V8J_166 | 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_4V8J_167 | 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 IL_16458.1 | |
| IL_4V8J_168 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_4V8J_169 | 1/BA/2687:2691, 1/BA/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_4V8J_170 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
| IL_4V8J_171 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_4V8J_172 | 1/BA/2838:2839, 1/BA/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_4V8J_173 | 1/BA/2843:2846, 1/BA/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_4V8J_174 | 1/BA/2847:2852, 1/BA/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_4V8J_176 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_37497.2 | |
| IL_4V8J_177 | 1/BB/23:28, 1/BB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_4V8J_178 | 1/BB/30:32, 1/BB/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_4V8J_179 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_4V8J_180 | 1/BB/71:79, 1/BB/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_4V8J_181 | 1/CA/30:32, 1/CA/535:536 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_4V8J_182 | 1/CA/44:45, 1/CA/391:393 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_4V8J_183 | 1/CA/47:52, 1/CA/354:356 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_4V8J_184 | 1/CA/54:56, 1/CA/351:352 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_93353.1 | |
| IL_4V8J_185 | 1/CA/63:66, 1/CA/96:97 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_4V8J_186 | 1/CA/67:69, 1/CA/93:95 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_4V8J_187 | 1/CA/122:125, 1/CA/226:227 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_4V8J_188 | 1/CA/126:130, 1/CA/222:225 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_4V8J_189 | 1/CA/142:147, 1/CA/162:168 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_4V8J_190 | 1/CA/180:182, 1/CA/195:197 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_4V8J_191 | 1/CA/237:242, 1/CA/272:279 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_4V8J_192 | 1/CA/244:247, 1/CA/269:270 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_4V8J_193 | 1/CA/287:288, 1/CA/299:303 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_4V8J_194 | 1/CA/362:364, 1/CA/387:388 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.13 | |
| IL_4V8J_195 | 1/CA/366:370, 1/CA/384:385 | C-loop Not in a motif group | homologous IL_4LFB_015 IL_75255.1 | |
| IL_4V8J_196 | 1/CA/370:371, 1/CA/382:384 | Single bulged G Not in a motif group | geometric IL_4LFB_016 IL_00225.2 | |
| IL_4V8J_197 | 1/CA/404:411, 1/CA/422:428 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_4V8J_198 | 1/CA/440:444, 1/CA/467:472 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4LFB_018 IL_88269.3 | |
| IL_4V8J_199 | 1/CA/444:449, 1/CA/461:467 | No text annotation Not in a motif group | homologous IL_4LFB_019 IL_11882.1 | |
| IL_4V8J_200 | 1/CA/487:494, 1/CA/523:524 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_4V8J_201 | 1/CA/498:504, 1/CA/511:519 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4V8J_202 | 1/CA/563:567, 1/CA/740:744 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_4V8J_203 | 1/CA/577:579, 1/CA/627:628 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_4V8J_204 | 1/CA/580:581, 1/CA/623:626 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_4V8J_205 | 1/CA/588:596, 1/CA/610:616 | No text annotation Not in a motif group | ||
| IL_4V8J_206 | 1/CA/637:638, 1/CA/734:737 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_4V8J_207 | 1/CA/640:641, 1/CA/730:732 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_4V8J_208 | 1/CA/645:649, 1/CA/723:726 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_4V8J_209 | 1/CA/666:671, 1/CA/682:690 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4V8J_210 | 1/CA/757:761, 1/CA/787:788 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
| IL_4V8J_211 | 1/CA/762:766, 1/CA/782:786 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_4V8J_212 | 1/CA/864:871, 1/CA/882:887 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4V8J_213 | 1/CA/899:900, 1/CA/1375:1377 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_4V8J_214 | 1/CA/902:904, 1/CA/1372:1373 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_4V8J_215 | 1/CA/910:912, 1/CA/1362:1366 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_4V8J_216 | 1/CA/930:931, 1/CA/1207:1209 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_4V8J_217 | 1/CA/970:977, 1/CA/1023:1027 | No text annotation Not in a motif group | ||
| IL_4V8J_218 | 1/CA/977:985, 1/CA/1000:1023 | No text annotation Not in a motif group | ||
| IL_4V8J_219 | 1/CA/1030:1032, 1/CA/1189:1190 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_4V8J_220 | 1/CA/1034:1038, 1/CA/1185:1187 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_4V8J_221 | 1/CA/1039:1040, 1/CA/1180:1184 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_4V8J_222 | 1/CA/1042:1043, 1/CA/1176:1178 | Single bulged U Not in a motif group | geometric IL_6CZR_156 IL_83039.13 | |
| IL_4V8J_223 | 1/CA/1043:1045, 1/CA/1174:1176 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_4V8J_225 | 1/CA/1105:1110, 1/CA/1125:1132 | No text annotation Not in a motif group | ||
| IL_4V8J_226 | 1/CA/1228:1234, 1/CA/1265:1271 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_4V8J_227 | 1/CA/1236:1239, 1/CA/1258:1263 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_4V8J_228 | 1/CA/1240:1243, 1/CA/1254:1257 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.9 | |
| IL_4V8J_230 | 1/CA/1284:1290, 1/CA/1309:1315 | No text annotation Not in a motif group | ||
| IL_4V8J_231 | 1/CA/1381:1383, 1/CA/1478:1481 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
| IL_4V8J_232 | 1/CA/1383:1386, 1/CA/1474:1478 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4V8J_233 | 1/CA/1387:1389, 1/CA/1471:1473 | No text annotation Not in a motif group | geometric IL_3GM7_005 IL_95997.1 | |
| IL_4V8J_234 | 1/CA/1389:1391, 1/CA/1468:1471 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_4V8J_235 | 1/CA/1394:1396, 1/CA/1463:1465 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_4V8J_236 | 1/CA/1398:1401, 1/CA/1458:1461 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_4V8J_237 | 1/CA/1413:1417, 1/CA/1443:1446 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.1 | |
| IL_4V8J_238 | 1/CA/1417:1419, 1/CA/1441:1443 | No text annotation Not in a motif group | geometric IL_6CZR_171 IL_95997.1 | |
| IL_4V8J_239 | 1/CA/1422:1427, 1/CA/1436:1438 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.2 | |
| IL_4V8J_242 | 1/DA/24:30, 1/DA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_4V8J_243 | 1/DA/36:37, 1/DA/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_4V8J_244 | 1/DA/42:43, 1/DA/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
| IL_4V8J_245 | 1/DA/81:85, 1/DA/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_4V8J_246 | 1/DA/183:184, 1/DA/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_4V8J_247 | 1/DA/188:194, 1/DA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
| IL_4V8J_248 | 1/DA/239:245, 1/DA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_4V8J_249 | 1/DA/271I:271J, 1/DA/271M:271O | Single bulged U Not in a motif group | homologous IL_7RQB_008 IL_83039.13 | |
| IL_4V8J_250 | 1/DA/272D:272E, 1/DA/363E:364 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_27635.1 | |
| IL_4V8J_252 | 1/DA/280:284, 1/DA/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
| IL_4V8J_253 | 1/DA/287:290, 1/DA/350:354 | No text annotation Not in a motif group | ||
| IL_4V8J_254 | 1/DA/293:295, 1/DA/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_4V8J_255 | 1/DA/481:484, 1/DA/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
| IL_4V8J_256 | 1/DA/537:539, 1/DA/554:556 | No text annotation Not in a motif group | geometric IL_4V88_424 IL_95997.1 | |
| IL_4V8J_257 | 1/DA/564:566, 1/DA/575:577 | No text annotation Not in a motif group | geometric IL_4WF9_017 IL_95997.1 | |
| IL_4V8J_258 | 1/DA/606:610, 1/DA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_4V8J_259 | 1/DA/672:674, 1/DA/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_4V8J_260 | 1/DA/674:678, 1/DA/799:806 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_4WF9_021 IL_17470.6 | |
| IL_4V8J_261 | 1/DA/697:698, 1/DA/763:765 | Single bulged A Not in a motif group | homologous IL_7RQB_019 IL_37497.2 | |
| IL_4V8J_262 | 1/DA/702:703, 1/DA/728:730 | Single bulged G Not in a motif group | geometric IL_7A0S_017 IL_00225.2 | |
| IL_4V8J_263 | 1/DA/703:707, 1/DA/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_4V8J_264 | 1/DA/738:741, 1/DA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_4V8J_265 | 1/DA/775:777, 1/DA/787:791 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 IL_90991.6 | |
| IL_4V8J_266 | 1/DA/837:838, 1/DA/940:942 | Single stack bend Not in a motif group | homologous IL_5J7L_266 IL_92001.1 | |
| IL_4V8J_267 | 1/DA/844:846, 1/DA/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
| IL_4V8J_268 | 1/DA/846:850, 1/DA/927:931 | No text annotation Not in a motif group | geometric IL_7RQB_026 IL_94165.1 | |
| IL_4V8J_270 | 1/DA/858:862, 1/DA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_7RQB_027 IL_38862.1 | |
| IL_4V8J_271 | 1/DA/862:863, 1/DA/913:915 | Minor groove platform Not in a motif group | geometric IL_4WF9_032 IL_42622.2 | |
| IL_4V8J_272 | 1/DA/864:868, 1/DA/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_4V8J_273 | 1/DA/870:873, 1/DA/904:907 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_402D_001 IL_30621.2 | |
| IL_4V8J_274 | 1/DA/875:879, 1/DA/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_4V8J_275 | 1/DA/880:881, 1/DA/895:897 | Single bulged A Not in a motif group | homologous IL_7RQB_033 IL_37497.2 | |
| IL_4V8J_276 | 1/DA/952:954, 1/DA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_4V8J_277 | 1/DA/994:996, 1/DA/1159:1160 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_4V8J_278 | 1/DA/998:1002, 1/DA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
| IL_4V8J_279 | 1/DA/1004:1011, 1/DA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_7RQB_037 IL_15861.7 | |
| IL_4V8J_280 | 1/DA/1011:1013, 1/DA/1149:1150 | Single bulged U Not in a motif group | geometric IL_7RQB_038 IL_83039.13 | |
| IL_4V8J_281 | 1/DA/1018:1024, 1/DA/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_4V8J_282 | 1/DA/1024:1030, 1/DA/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_4V8J_283 | 1/DA/1031:1034, 1/DA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_4V8J_284 | 1/DA/1196:1198, 1/DA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7A0S_041 IL_52767.2 | |
| IL_4V8J_285 | 1/DA/1202:1206, 1/DA/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_4V8J_286 | 1/DA/1208:1215, 1/DA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_4V8J_287 | 1/DA/1219:1221, 1/DA/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_4V8J_288 | 1/DA/1262:1269, 1/DA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_4V8J_289 | 1/DA/1310:1313, 1/DA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_4V8J_290 | 1/DA/1319:1323, 1/DA/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_4V8J_291 | 1/DA/1351:1355, 1/DA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_4V8J_292 | 1/DA/1357:1361, 1/DA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_4WF9_052 IL_17136.1 | |
| IL_4V8J_293 | 1/DA/1415:1416, 1/DA/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_4V8J_294 | 1/DA/1417:1421, 1/DA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_4V8J_295 | 1/DA/1433:1435, 1/DA/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_4V8J_296 | 1/DA/1437:1440, 1/DA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_4V8J_298 | 1/DA/1469:1473, 1/DA/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_4V8J_299 | 1/DA/1481:1482, 1/DA/1506:1510 | No text annotation Not in a motif group | geometric IL_7RQB_061 IL_52493.1 | |
| IL_4V8J_301 | 1/DA/1488:1491, 1/DA/1499:1501 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5ML7_010 IL_82068.2 | |
| IL_4V8J_302 | 1/DA/1526:1529, 1/DA/1540:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_02656.1 | |
| IL_4V8J_303 | 1/DA/1651:1656, 1/DA/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_4V8J_304 | 1/DA/1663:1665, 1/DA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_4V8J_305 | 1/DA/1666:1669, 1/DA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_4V8J_306 | 1/DA/1669:1674, 1/DA/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_82842.2 | |
| IL_4V8J_307 | 1/DA/1686:1691, 1/DA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
| IL_4V8J_308 | 1/DA/1770:1771, 1/DA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_4V8J_309 | 1/DA/1798:1804, 1/DA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_4V8J_310 | 1/DA/1837:1840, 1/DA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7A0S_066 IL_88739.1 | |
| IL_4V8J_311 | 1/DA/1841:1842, 1/DA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7A0S_067 IL_16396.2 | |
| IL_4V8J_312 | 1/DA/1846:1849, 1/DA/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_4V8J_313 | 1/DA/1851:1855, 1/DA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_4V8J_314 | 1/DA/1856:1860, 1/DA/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_4V8J_315 | 1/DA/1933:1934, 1/DA/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_318 IL_59677.2 | |
| IL_4V8J_316 | 1/DA/1934:1945, 1/DA/1961:1964 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_4V8J_317 | 1/DA/2050:2052, 1/DA/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_4V8J_318 | 1/DA/2054:2057, 1/DA/2611:2615 | No text annotation Not in a motif group | ||
| IL_4V8J_319 | 1/DA/2067:2069, 1/DA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_4V8J_320 | 1/DA/2070:2071, 1/DA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_4V8J_321 | 1/DA/2081:2083, 1/DA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_4V8J_322 | 1/DA/2085:2087, 1/DA/2232:2234 | No text annotation Not in a motif group | homologous IL_7A0S_078 IL_95997.1 | |
| IL_4V8J_323 | 1/DA/2098:2100, 1/DA/2189:2191 | Isolated cWH basepair Not in a motif group | geometric IL_4KQ0_003 IL_51629.2 | |
| IL_4V8J_325 | 1/DA/2108:2110, 1/DA/2179:2181 | No text annotation Not in a motif group | geometric IL_4PCJ_001 IL_95997.1 | |
| IL_4V8J_326 | 1/DA/2110:2120, 1/DA/2178:2179 | No text annotation Not in a motif group | homologous IL_3U4M_002 IL_45944.3 | |
| IL_4V8J_327 | 1/DA/2124:2127, 1/DA/2161:2174 | No text annotation Not in a motif group | homologous IL_3U4M_003 IL_75283.2 | |
| IL_4V8J_328 | 1/DA/2129:2137, 1/DA/2154:2159 | No text annotation Not in a motif group | ||
| IL_4V8J_329 | 1/DA/2297:2299, 1/DA/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4WF9_086 IL_38958.7 | |
| IL_4V8J_330 | 1/DA/2350:2353, 1/DA/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_4V8J_331 | 1/DA/2401:2403, 1/DA/2414:2415 | No text annotation Not in a motif group | ||
| IL_4V8J_332 | 1/DA/2453:2454, 1/DA/2498:2500 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.2 | |
| IL_4V8J_333 | 1/DA/2454:2455, 1/DA/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_4V8J_334 | 1/DA/2457:2459, 1/DA/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_4V8J_335 | 1/DA/2459:2461, 1/DA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_4V8J_336 | 1/DA/2466:2470, 1/DA/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_4V8J_337 | 1/DA/2507:2508, 1/DA/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_4V8J_338 | 1/DA/2510:2512, 1/DA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
| IL_4V8J_339 | 1/DA/2512:2513, 1/DA/2571:2574 | No text annotation Not in a motif group | homologous IL_4WF9_096 IL_71530.2 | |
| IL_4V8J_340 | 1/DA/2522:2523, 1/DA/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_4WF9_097 IL_95601.3 | |
| IL_4V8J_342 | 1/DA/2591:2592, 1/DA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_4V8J_343 | 1/DA/2636:2640, 1/DA/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_4V8J_344 | 1/DA/2652:2658, 1/DA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 IL_16458.1 | |
| IL_4V8J_345 | 1/DA/2680:2684, 1/DA/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_4V8J_346 | 1/DA/2687:2691, 1/DA/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_4V8J_347 | 1/DA/2695:2696, 1/DA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
| IL_4V8J_348 | 1/DA/2737:2742, 1/DA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_4V8J_349 | 1/DA/2838:2839, 1/DA/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_4V8J_350 | 1/DA/2843:2846, 1/DA/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_4V8J_351 | 1/DA/2847:2852, 1/DA/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_4V8J_353 | 1/DB/17:18, 1/DB/65:67 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_37497.2 | |
| IL_4V8J_354 | 1/DB/23:28, 1/DB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_4V8J_355 | 1/DB/30:32, 1/DB/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_4V8J_356 | 1/DB/34:38, 1/DB/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_4V8J_357 | 1/DB/71:79, 1/DB/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V8J_051 | No text annotation | ||
| IL_4V8J_062 | No text annotation | ||
| IL_4V8J_063 | No text annotation | ||
| IL_4V8J_064 | No text annotation | ||
| IL_4V8J_074 | No text annotation | ||
| IL_4V8J_092 | No text annotation | ||
| IL_4V8J_120 | Single stack bend | ||
| IL_4V8J_123 | No text annotation | ||
| IL_4V8J_147 | No text annotation | ||
| IL_4V8J_164 | UU cWW | ||
| IL_4V8J_175 | No text annotation | ||
| IL_4V8J_224 | Tandem non-canonical cWW pairs | ||
| IL_4V8J_229 | No text annotation | ||
| IL_4V8J_240 | No text annotation | ||
| IL_4V8J_241 | No text annotation | ||
| IL_4V8J_251 | No text annotation | ||
| IL_4V8J_269 | No text annotation | ||
| IL_4V8J_297 | Single stack bend | ||
| IL_4V8J_300 | No text annotation | ||
| IL_4V8J_324 | No text annotation | ||
| IL_4V8J_341 | UU cWW | ||
| IL_4V8J_352 | No text annotation | ||
| IL_4V8J_358 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V8J_001 | 1/AA/809:812, 1/AA/834:838, 1/AA/845:851 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_4V8J_002 | 1/AA/913:916, 1/AA/1325:1331, 1/AA/1354:1361 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_4V8J_003 | 1/AA/920:923, 1/AA/1216:1218, 1/AA/1318:1321 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_4V8J_004 | 1/AA/932:939, 1/AA/950:961, 1/AA/1202:1206 | No text annotation Not in a motif group | ||
| J3_4V8J_005 | 1/AA/967:970, 1/AA/1027:1029, 1/AA/1191:1196 | No text annotation Not in a motif group | ||
| J3_4V8J_006 | 1/AA/1045:1050, 1/AA/1089:1095, 1/AA/1168:1174 | No text annotation Not in a motif group | ||
| J3_4V8J_007 | 1/AA/1098:1100, 1/AA/1137:1143, 1/AA/1156:1165 | No text annotation Not in a motif group | ||
| J3_4V8J_008 | 1/AA/1218:1222, 1/AA/1277:1284, 1/AA/1315:1318 | No text annotation Not in a motif group | ||
| J3_4V8J_009 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_4V8J_010 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_4V8J_011 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation Not in a motif group | homologous J3_7A0S_006 NA | |
| J3_4V8J_012 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_4V8J_013 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_4V8J_014 | 1/BA/2295:2297, 1/BA/2321:2323, 1/BA/2332:2337 | No text annotation Not in a motif group | ||
| J3_4V8J_015 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_4V8J_016 | 1/CA/809:812, 1/CA/834:838, 1/CA/845:851 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_4V8J_017 | 1/CA/920:923, 1/CA/1216:1218, 1/CA/1318:1321 | No text annotation Not in a motif group | homologous J3_5J7L_005 NA | |
| J3_4V8J_018 | 1/CA/932:939, 1/CA/950:961, 1/CA/1202:1206 | No text annotation Not in a motif group | ||
| J3_4V8J_019 | 1/CA/967:970, 1/CA/1027:1029, 1/CA/1191:1196 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_4V8J_020 | 1/CA/1045:1050, 1/CA/1089:1095, 1/CA/1168:1174 | No text annotation Not in a motif group | ||
| J3_4V8J_021 | 1/CA/1098:1100, 1/CA/1137:1143, 1/CA/1156:1165 | No text annotation Not in a motif group | ||
| J3_4V8J_022 | 1/CA/1218:1222, 1/CA/1277:1284, 1/CA/1315:1318 | No text annotation Not in a motif group | ||
| J3_4V8J_023 | 1/DA/683:689, 1/DA/773:775, 1/DA/791:794 | No text annotation Not in a motif group | ||
| J3_4V8J_024 | 1/DA/698:700, 1/DA/732:736, 1/DA/760:763 | No text annotation Not in a motif group | ||
| J3_4V8J_025 | 1/DA/1298:1303, 1/DA/1625:1627, 1/DA/1639:1642 | No text annotation Not in a motif group | homologous J3_7A0S_006 NA | |
| J3_4V8J_026 | 1/DA/1306:1309, 1/DA/1605:1611, 1/DA/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_4V8J_027 | 1/DA/2091:2093, 1/DA/2196:2200, 1/DA/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_4V8J_028 | 1/DA/2295:2297, 1/DA/2321:2323, 1/DA/2332:2337 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
| J3_4V8J_029 | 1/DA/2517:2520, 1/DA/2545:2547, 1/DA/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA |
Problematic loops
No problematic loops
Coloring options: