Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V8J_0011/AA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_4V8J_0021/AA/73:89No text annotation
Not in a motif group
HL_4V8J_0031/AA/152:157GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_4V8J_0041/AA/186:191No text annotation
Not in a motif group
homologous
HL_4LFB_004
HL_10278.1
HL_4V8J_0061/AA/254:262No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_4V8J_0071/AA/291:296GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.1
HL_4V8J_0081/AA/315:328No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_4V8J_0091/AA/336:343No text annotation
Not in a motif group
HL_4V8J_0101/AA/374:379GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.1
HL_4V8J_0111/AA/414:419UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_4V8J_0121/AA/452:458No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_4V8J_0131/AA/505:510No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_4V8J_0141/AA/600:606No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_4V8J_0151/AA/672:681No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_4V8J_0161/AA/709:714Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_4V8J_0171/AA/769:779No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_4V8J_0181/AA/821:825No text annotation
Not in a motif group
homologous
HL_4LFB_018
HL_38927.2
HL_4V8J_0191/AA/839:844GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_42097.1
HL_4V8J_0201/AA/874:879GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_4V8J_0211/AA/940:949No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4V8J_0221/AA/990:995GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_4V8J_0231/AA/1058:1063GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_42097.1
HL_4V8J_0241/AA/1071:1078No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4V8J_0251/AA/1110:1125No text annotation
Not in a motif group
HL_4V8J_0261/AA/1147:1152No text annotation
Not in a motif group
HL_4V8J_0271/AA/1246:1251GNRA
Not in a motif group
geometric
HL_5TBW_064
HL_42097.1
HL_4V8J_0281/AA/1295:1304No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_4V8J_0291/AA/1337:1348No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_4V8J_0301/AA/1429:1434UNCG
Not in a motif group
homologous
HL_4LFB_031
HL_03562.2
HL_4V8J_0311/AA/1492:1497No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_4V8J_0321/AV/13:23No text annotation
Not in a motif group
homologous
HL_5B63_003
HL_25462.2
HL_4V8J_0331/AV/32:40No text annotation
Not in a motif group
homologous
HL_6CFJ_107
NA
HL_4V8J_0341/AV/53:63No text annotation
Not in a motif group
homologous
HL_4WSM_226
HL_22031.1
HL_4V8J_0361/AW/30:40No text annotation
Not in a motif group
homologous
HL_4V7M_039
HL_36684.1
HL_4V8J_0371/AW/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_6PMO_005
HL_22280.1
HL_4V8J_0391/BA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_4V8J_0401/BA/87:95No text annotation
Not in a motif group
geometric
HL_5TBW_022
HL_94803.1
HL_4V8J_0411/BA/123:128No text annotation
Not in a motif group
homologous
HL_7A0S_003
HL_75407.1
HL_4V8J_0421/BA/139:142ANo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.2
HL_4V8J_0441/BA/194:201No text annotation
Not in a motif group
homologous
HL_5J7L_139
HL_06192.2
HL_4V8J_0451/BA/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_4V8J_0461/BA/246:252No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_4V8J_0471/BA/271J:271MNo text annotation
Not in a motif group
HL_4V8J_0481/BA/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_4V8J_0491/BA/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_4V8J_0501/BA/326:336No text annotation
Not in a motif group
HL_4V8J_0511/BA/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_4V8J_0521/BA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_4V8J_0531/BA/462:467No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_42097.1
HL_4V8J_0541/BA/487:493GNRA
Not in a motif group
homologous
HL_4WF9_016
HL_42097.1
HL_4V8J_0561/BA/566:575No text annotation
Not in a motif group
homologous
HL_7RQB_018
HL_89380.2
HL_4V8J_0571/BA/612:615No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_4V8J_0581/BA/629:634GNRA
Not in a motif group
homologous
HL_4WF9_020
HL_42097.1
HL_4V8J_0591/BA/640:648No text annotation
Not in a motif group
geometric
HL_5J7L_012
HL_84085.2
HL_4V8J_0601/BA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_4V8J_0611/BA/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_4V8J_0621/BA/779:785No text annotation
Not in a motif group
homologous
HL_7A0S_023
HL_27930.1
HL_4V8J_0631/BA/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_4V8J_0651/BA/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.1
HL_4V8J_0661/BA/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_4V8J_0691/BA/1222:1227No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.1
HL_4V8J_0701/BA/1281:1289No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_4V8J_0711/BA/1324:1330No text annotation
Not in a motif group
homologous
HL_4WF9_033
HL_46680.1
HL_4V8J_0721/BA/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_4V8J_0731/BA/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_4V8J_0741/BA/1450A:1461No text annotation
Not in a motif group
HL_4V8J_0751/BA/1491:1499No text annotation
Not in a motif group
geometric
HL_2ZZM_002
HL_23083.1
HL_4V8J_0761/BA/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_4V8J_0771/BA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_4V8J_0781/BA/1631:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_4V8J_0791/BA/1691:1696UNCG
Not in a motif group
homologous
HL_5J7L_175
HL_03562.2
HL_4V8J_0801/BA/1718:1744No text annotation
Not in a motif group
HL_4V8J_0811/BA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_4V8J_0821/BA/1777:1787No text annotation
Not in a motif group
homologous
HL_4WF9_043
HL_43613.5
HL_4V8J_0831/BA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_4V8J_0841/BA/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.1
HL_4V8J_0851/BA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4V8J_0861/BA/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_4V8J_0871/BA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_4V8J_0881/BA/2143:2148No text annotation
Not in a motif group
homologous
HL_7RQB_051
NA
HL_4V8J_0891/BA/2205:2219No text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_89098.1
HL_4V8J_0901/BA/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_4V8J_0911/BA/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_4V8J_0921/BA/2302:2314No text annotation
Not in a motif group
HL_4V8J_0931/BA/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_4V8J_0941/BA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_4V8J_0951/BA/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.1
HL_4V8J_0961/BA/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_4V8J_0971/BA/2471:2479No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_4V8J_0981/BA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_88526.2
HL_4V8J_0991/BA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4V8J_1001/BA/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_4V8J_1011/BA/2658:2663GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_42097.1
HL_4V8J_1021/BA/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_4V8J_1031/BA/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_4V8J_1051/BA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_4V8J_1061/BA/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.1
HL_4V8J_1071/BB/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_4V8J_1081/BB/86:91No text annotation
Not in a motif group
homologous
HL_7A0S_070
HL_42097.1
HL_4V8J_1091/CA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_4V8J_1101/CA/74:88No text annotation
Not in a motif group
HL_4V8J_1111/CA/152:157GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_4V8J_1121/CA/186:191No text annotation
Not in a motif group
homologous
HL_4LFB_004
HL_10278.1
HL_4V8J_1131/CA/207:211No text annotation
Not in a motif group
homologous
HL_4LFB_005
HL_56691.2
HL_4V8J_1141/CA/253:263No text annotation
Not in a motif group
HL_4V8J_1151/CA/291:296GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.1
HL_4V8J_1161/CA/315:328No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_4V8J_1171/CA/336:343No text annotation
Not in a motif group
HL_4V8J_1181/CA/374:379GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.1
HL_4V8J_1191/CA/414:419UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_4V8J_1201/CA/452:458No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_4V8J_1211/CA/505:510No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_75407.1
HL_4V8J_1221/CA/600:606No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_4V8J_1231/CA/672:681No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_4V8J_1241/CA/709:714Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_4V8J_1251/CA/769:779No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_4V8J_1261/CA/821:825No text annotation
Not in a motif group
homologous
HL_4LFB_018
HL_38927.2
HL_4V8J_1271/CA/839:844GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_42097.1
HL_4V8J_1281/CA/874:879GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_4V8J_1291/CA/940:949No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4V8J_1301/CA/990:995GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_4V8J_1311/CA/1058:1063GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_42097.1
HL_4V8J_1321/CA/1071:1078No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4V8J_1331/CA/1110:1125No text annotation
Not in a motif group
HL_4V8J_1341/CA/1147:1152GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_4V8J_1351/CA/1246:1251No text annotation
Not in a motif group
geometric
HL_7A0S_068
HL_42097.1
HL_4V8J_1361/CA/1295:1304No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_4V8J_1371/CA/1337:1348No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_4V8J_1381/CA/1429:1434UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_4V8J_1391/CA/1492:1497No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_4V8J_1401/CV/13:23No text annotation
Not in a motif group
homologous
HL_5B63_003
HL_25462.2
HL_4V8J_1411/CV/32:40tRNA anticodon loop
Not in a motif group
homologous
HL_4TUE_034
HL_53597.2
HL_4V8J_1421/CV/54:62T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_1QU2_003
HL_71309.1
HL_4V8J_1441/CW/29:41No text annotation
Not in a motif group
homologous
HL_6GSL_221
HL_06285.2
HL_4V8J_1451/CW/50:64No text annotation
Not in a motif group
HL_4V8J_1471/DA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_4V8J_1481/DA/87:95No text annotation
Not in a motif group
geometric
HL_5TBW_022
HL_94803.1
HL_4V8J_1491/DA/123:128No text annotation
Not in a motif group
homologous
HL_7A0S_003
HL_75407.1
HL_4V8J_1501/DA/139:142ANo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.2
HL_4V8J_1521/DA/194:201No text annotation
Not in a motif group
homologous
HL_5J7L_139
HL_06192.2
HL_4V8J_1531/DA/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_4V8J_1541/DA/246:252No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_4V8J_1551/DA/271J:271MNo text annotation
Not in a motif group
HL_4V8J_1561/DA/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_4V8J_1571/DA/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_4V8J_1581/DA/326:336No text annotation
Not in a motif group
HL_4V8J_1591/DA/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_4V8J_1601/DA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_4V8J_1611/DA/462:467No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_42097.1
HL_4V8J_1621/DA/487:493GNRA
Not in a motif group
homologous
HL_4WF9_016
HL_42097.1
HL_4V8J_1641/DA/566:575No text annotation
Not in a motif group
homologous
HL_7RQB_018
HL_89380.2
HL_4V8J_1651/DA/612:615No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_4V8J_1661/DA/629:634GNRA
Not in a motif group
homologous
HL_4WF9_020
HL_42097.1
HL_4V8J_1671/DA/640:648No text annotation
Not in a motif group
geometric
HL_5J7L_012
HL_84085.2
HL_4V8J_1681/DA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_4V8J_1691/DA/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_4V8J_1701/DA/779:785No text annotation
Not in a motif group
homologous
HL_7A0S_023
HL_27930.1
HL_4V8J_1711/DA/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_4V8J_1721/DA/884:892No text annotation
Not in a motif group
HL_4V8J_1731/DA/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.1
HL_4V8J_1741/DA/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_4V8J_1761/DA/1170:1179No text annotation
Not in a motif group
HL_4V8J_1771/DA/1222:1227No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.1
HL_4V8J_1781/DA/1281:1289No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_4V8J_1791/DA/1324:1330No text annotation
Not in a motif group
homologous
HL_4WF9_033
HL_46680.1
HL_4V8J_1801/DA/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_4V8J_1811/DA/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_4V8J_1821/DA/1450A:1461No text annotation
Not in a motif group
HL_4V8J_1831/DA/1491:1499No text annotation
Not in a motif group
geometric
HL_2ZZM_002
HL_23083.1
HL_4V8J_1841/DA/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_4V8J_1851/DA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_4V8J_1861/DA/1631:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_4V8J_1871/DA/1691:1696UNCG
Not in a motif group
homologous
HL_5J7L_175
HL_03562.2
HL_4V8J_1881/DA/1718:1744No text annotation
Not in a motif group
HL_4V8J_1891/DA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_4V8J_1901/DA/1777:1787No text annotation
Not in a motif group
homologous
HL_4WF9_043
HL_43613.5
HL_4V8J_1911/DA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_4V8J_1921/DA/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.1
HL_4V8J_1931/DA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4V8J_1941/DA/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_4V8J_1951/DA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_4V8J_1961/DA/2143:2148No text annotation
Not in a motif group
homologous
HL_7RQB_051
NA
HL_4V8J_1971/DA/2205:2219No text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_89098.1
HL_4V8J_1981/DA/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_4V8J_1991/DA/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_4V8J_2001/DA/2302:2314No text annotation
Not in a motif group
HL_4V8J_2011/DA/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_4V8J_2021/DA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_4V8J_2031/DA/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.1
HL_4V8J_2041/DA/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_4V8J_2051/DA/2471:2479No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_4V8J_2061/DA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_88526.2
HL_4V8J_2071/DA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4V8J_2081/DA/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_4V8J_2091/DA/2658:2663GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_42097.1
HL_4V8J_2101/DA/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_4V8J_2111/DA/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_4V8J_2131/DA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_4V8J_2141/DA/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.1
HL_4V8J_2151/DB/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_4V8J_2161/DB/86:91No text annotation
Not in a motif group
homologous
HL_7A0S_070
HL_42097.1

Problematic loops

#loop idProblemSequence
HL_4V8J_005No text annotation
HL_4V8J_035No text annotation
HL_4V8J_038tRNA anticodon loop
HL_4V8J_043No text annotation
HL_4V8J_055No text annotation
HL_4V8J_064No text annotation
HL_4V8J_067No text annotation
HL_4V8J_068No text annotation
HL_4V8J_104No text annotation
HL_4V8J_143No text annotation
HL_4V8J_146tRNA anticodon loop
HL_4V8J_151No text annotation
HL_4V8J_163No text annotation
HL_4V8J_175No text annotation
HL_4V8J_212No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V8J_0011/AA/30:32,
1/AA/535:536
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.2
IL_4V8J_0021/AA/44:45,
1/AA/391:393
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.2
IL_4V8J_0031/AA/47:52,
1/AA/354:356
No text annotation
Not in a motif group
homologous
IL_4LFB_003
IL_11178.1
IL_4V8J_0041/AA/54:56,
1/AA/351:352
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_4V8J_0051/AA/63:66,
1/AA/96:97
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_4V8J_0061/AA/67:69,
1/AA/93:95
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_95997.1
IL_4V8J_0071/AA/122:125,
1/AA/226:227
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_4V8J_0081/AA/126:130,
1/AA/222:225
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_4V8J_0091/AA/142:147,
1/AA/162:168
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4LFB_009
IL_39753.1
IL_4V8J_0101/AA/180:182,
1/AA/195:197
No text annotation
Not in a motif group
homologous
IL_4LFB_010
IL_95997.1
IL_4V8J_0111/AA/237:242,
1/AA/272:279
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_4V8J_0121/AA/244:247,
1/AA/269:270
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_4V8J_0131/AA/287:288,
1/AA/299:303
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_4V8J_0141/AA/362:364,
1/AA/387:388
Single bulged U
Not in a motif group
homologous
IL_5J7L_017
IL_83039.13
IL_4V8J_0151/AA/366:370,
1/AA/384:385
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_75255.1
IL_4V8J_0161/AA/370:371,
1/AA/382:384
Single bulged G
Not in a motif group
geometric
IL_4LFB_016
IL_00225.2
IL_4V8J_0171/AA/404:411,
1/AA/422:428
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_4V8J_0181/AA/440:444,
1/AA/467:472
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4LFB_018
IL_88269.3
IL_4V8J_0191/AA/444:449,
1/AA/461:467
No text annotation
Not in a motif group
geometric
IL_4LFB_019
IL_11882.1
IL_4V8J_0201/AA/487:494,
1/AA/523:524
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_4V8J_0211/AA/498:504,
1/AA/511:519
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_4V8J_0221/AA/552:558,
1/AA/857:858
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_4V8J_0231/AA/563:567,
1/AA/740:744
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_4V8J_0241/AA/577:579,
1/AA/627:628
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.1
IL_4V8J_0251/AA/580:581,
1/AA/623:626
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_4V8J_0261/AA/588:595,
1/AA/611:616
No text annotation
Not in a motif group
homologous
IL_4LFB_026
IL_78349.1
IL_4V8J_0271/AA/637:638,
1/AA/734:737
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_4V8J_0281/AA/640:641,
1/AA/730:732
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.1
IL_4V8J_0291/AA/645:649,
1/AA/723:726
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4LFB_029
IL_71110.1
IL_4V8J_0301/AA/656:661,
1/AA/695:700
No text annotation
Not in a motif group
homologous
IL_5J7L_034
IL_04668.1
IL_4V8J_0311/AA/666:671,
1/AA/682:690
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_4V8J_0321/AA/757:761,
1/AA/787:788
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_4V8J_0331/AA/762:766,
1/AA/782:786
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_033
IL_17136.1
IL_4V8J_0341/AA/864:871,
1/AA/882:887
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_4V8J_0351/AA/899:900,
1/AA/1375:1377
Single bulged A
Not in a motif group
geometric
IL_5J7L_039
IL_37497.2
IL_4V8J_0361/AA/900:902,
1/AA/1373:1375
No text annotation
Not in a motif group
geometric
IL_5D0B_001
IL_95997.1
IL_4V8J_0371/AA/902:904,
1/AA/1372:1373
Single bulged G
Not in a motif group
geometric
IL_4LFB_036
IL_00225.2
IL_4V8J_0381/AA/910:912,
1/AA/1362:1366
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_4V8J_0391/AA/929:931,
1/AA/1207:1210
Minor groove platform with extra cWW
Not in a motif group
geometric
IL_4WF9_003
IL_65006.1
IL_4V8J_0401/AA/970:977,
1/AA/1023:1027
No text annotation
Not in a motif group
IL_4V8J_0411/AA/977:985,
1/AA/1000:1023
No text annotation
Not in a motif group
IL_4V8J_0421/AA/1030:1032,
1/AA/1189:1190
Single bulged U
Not in a motif group
homologous
IL_4LFB_042
IL_83039.13
IL_4V8J_0431/AA/1034:1038,
1/AA/1185:1187
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_4V8J_0441/AA/1039:1040,
1/AA/1180:1184
Minor groove platform
Not in a motif group
homologous
IL_4LFB_045
IL_93353.1
IL_4V8J_0451/AA/1042:1043,
1/AA/1176:1178
Single bulged U
Not in a motif group
geometric
IL_6CZR_156
IL_83039.13
IL_4V8J_0461/AA/1043:1045,
1/AA/1174:1176
No text annotation
Not in a motif group
homologous
IL_4LFB_047
IL_95997.1
IL_4V8J_0471/AA/1106:1110,
1/AA/1125:1131
No text annotation
Not in a motif group
homologous
IL_4LFB_048
IL_85222.1
IL_4V8J_0481/AA/1228:1234,
1/AA/1265:1271
No text annotation
Not in a motif group
homologous
IL_4LFB_051
IL_09129.1
IL_4V8J_0491/AA/1236:1240,
1/AA/1257:1263
No text annotation
Not in a motif group
IL_4V8J_0501/AA/1240:1243,
1/AA/1254:1257
Double sheared
Not in a motif group
geometric
IL_5J7L_256
IL_09705.9
IL_4V8J_0521/AA/1284:1289,
1/AA/1310:1315
No text annotation
Not in a motif group
homologous
IL_4LFB_055
IL_19954.2
IL_4V8J_0531/AA/1381:1383,
1/AA/1478:1481
No text annotation
Not in a motif group
homologous
IL_4LFB_056
NA
IL_4V8J_0541/AA/1383:1386,
1/AA/1474:1478
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_4V8J_0551/AA/1387:1389,
1/AA/1471:1473
UU cWW
Not in a motif group
geometric
IL_4ZC7_004
IL_95997.1
IL_4V8J_0561/AA/1389:1391,
1/AA/1468:1471
Decoding loop related
Not in a motif group
geometric
IL_3C3Z_002
IL_64417.1
IL_4V8J_0571/AA/1394:1396,
1/AA/1463:1465
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_4V8J_0581/AA/1398:1401,
1/AA/1458:1461
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_4V8J_0591/AA/1413:1417,
1/AA/1443:1446
UAA/GAN variation
Not in a motif group
geometric
IL_4LFB_062
IL_07235.1
IL_4V8J_0601/AA/1417:1419,
1/AA/1441:1443
No text annotation
Not in a motif group
homologous
IL_4LFB_063
IL_95997.1
IL_4V8J_0611/AA/1422:1427,
1/AA/1436:1438
No text annotation
Not in a motif group
homologous
IL_4LFB_064
IL_92788.2
IL_4V8J_0651/BA/24:30,
1/BA/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_7RQB_001
IL_66414.6
IL_4V8J_0661/BA/36:37,
1/BA/442:444
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.2
IL_4V8J_0671/BA/42:43,
1/BA/434:436
Minor groove platform
Not in a motif group
homologous
IL_7RQB_003
IL_42622.2
IL_4V8J_0681/BA/81:85,
1/BA/97:105
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_4V8J_0691/BA/183:184,
1/BA/212:214
Single stack bend
Not in a motif group
homologous
IL_7RQB_005
IL_76488.2
IL_4V8J_0701/BA/188:194,
1/BA/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7RQB_006
IL_04346.7
IL_4V8J_0711/BA/239:245,
1/BA/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_4V8J_0721/BA/271I:271J,
1/BA/271M:271O
Single bulged U
Not in a motif group
geometric
IL_5TBW_125
IL_83039.13
IL_4V8J_0731/BA/272D:272E,
1/BA/363E:364
Major groove platform
Not in a motif group
homologous
IL_7RQB_009
IL_27635.1
IL_4V8J_0751/BA/280:284,
1/BA/357:360
tSH-tHW
Not in a motif group
geometric
IL_7RQB_011
IL_04059.1
IL_4V8J_0761/BA/287:290,
1/BA/350:354
No text annotation
Not in a motif group
IL_4V8J_0771/BA/293:295,
1/BA/343:347
No text annotation
Not in a motif group
homologous
IL_7RQB_013
IL_69440.1
IL_4V8J_0781/BA/481:484,
1/BA/496:509
No text annotation
Not in a motif group
homologous
IL_7RQB_014
IL_60992.6
IL_4V8J_0791/BA/537:539,
1/BA/554:556
No text annotation
Not in a motif group
geometric
IL_4V88_424
IL_95997.1
IL_4V8J_0801/BA/564:566,
1/BA/575:577
No text annotation
Not in a motif group
geometric
IL_4WF9_017
IL_95997.1
IL_4V8J_0811/BA/606:610,
1/BA/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_7RQB_016
IL_17136.1
IL_4V8J_0821/BA/672:674,
1/BA/806:808
No text annotation
Not in a motif group
geometric
IL_7RQB_017
IL_95997.1
IL_4V8J_0831/BA/674:678,
1/BA/799:806
tHW-tHW cross-strand stack
Not in a motif group
homologous
IL_4WF9_021
IL_17470.6
IL_4V8J_0841/BA/697:698,
1/BA/763:765
Single bulged A
Not in a motif group
geometric
IL_7RQB_019
IL_37497.2
IL_4V8J_0851/BA/702:703,
1/BA/728:730
Single bulged G
Not in a motif group
geometric
IL_7A0S_017
IL_00225.2
IL_4V8J_0861/BA/703:707,
1/BA/724:728
Triple sheared
Not in a motif group
homologous
IL_7RQB_021
IL_56467.8
IL_4V8J_0871/BA/738:741,
1/BA/756:758
Major groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_022
IL_05564.2
IL_4V8J_0881/BA/775:777,
1/BA/787:791
Multiple bulged bases
Not in a motif group
geometric
IL_7RQB_023
IL_90991.6
IL_4V8J_0891/BA/837:838,
1/BA/940:942
Single stack bend
Not in a motif group
homologous
IL_5J7L_266
IL_92001.1
IL_4V8J_0901/BA/844:846,
1/BA/931:934
Intercalated cWW
Not in a motif group
geometric
IL_7RQB_025
IL_52767.2
IL_4V8J_0911/BA/846:850,
1/BA/927:931
No text annotation
Not in a motif group
homologous
IL_7RQB_026
IL_94165.1
IL_4V8J_0931/BA/858:862,
1/BA/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_7RQB_027
IL_38862.1
IL_4V8J_0941/BA/862:863,
1/BA/913:915
Minor groove platform
Not in a motif group
homologous
IL_4WF9_032
IL_42622.2
IL_4V8J_0951/BA/864:868,
1/BA/909:912
C-loop
Not in a motif group
homologous
IL_7RQB_029
IL_02509.1
IL_4V8J_0961/BA/870:873,
1/BA/904:907
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_402D_001
IL_30621.2