5J8B | Motifs

113 Hairpin loops
173 Internal loops
28 Junction loops

Valid loops

#	loop id	location	annotation	motif
1	HL_5J8B_001 ➜	1/A/57:66	NA	NA
2	HL_5J8B_002 ➜	1/A/85:93	NA	NA
3	HL_5J8B_003 ➜	1/A/120:125	NA	NA
4	HL_5J8B_004 ➜	1/A/135:140	NA	NA
5	HL_5J8B_005 ➜	1/A/182:189	NA	NA
6	HL_5J8B_006 ➜	1/A/213:218	NA	NA
7	HL_5J8B_007 ➜	1/A/234:240	NA	NA
8	HL_5J8B_009 ➜	1/A/328:335	NA	NA
9	HL_5J8B_010 ➜	1/A/342:346	NA	NA
10	HL_5J8B_011 ➜	1/A/350:358	NA	NA
11	HL_5J8B_012 ➜	1/A/408:418	NA	NA
12	HL_5J8B_013 ➜	1/A/436:443	NA	NA
13	HL_5J8B_014 ➜	1/A/487:492	NA	NA
14	HL_5J8B_015 ➜	1/A/512:517	NA	NA
15	HL_5J8B_017 ➜	1/A/588:597	NA	NA
16	HL_5J8B_018 ➜	1/A/634:640	NA	NA
17	HL_5J8B_019 ➜	1/A/653:658	NA	NA
18	HL_5J8B_020 ➜	1/A/665:671	NA	NA
19	HL_5J8B_022 ➜	1/A/758:765	NA	NA
20	HL_5J8B_023 ➜	1/A/790:799	NA	NA
21	HL_5J8B_024 ➜	1/A/825:831	NA	NA
22	HL_5J8B_025 ➜	1/A/872:877	NA	NA
23	HL_5J8B_027 ➜	1/A/999:1006	NA	NA
24	HL_5J8B_028 ➜	1/A/1023:1030	NA	NA
25	HL_5J8B_032 ➜	1/A/1267:1272	NA	NA
26	HL_5J8B_033 ➜	1/A/1326:1334	NA	NA
27	HL_5J8B_034 ➜	1/A/1369:1375	NA	NA
28	HL_5J8B_035 ➜	1/A/1408:1413	NA	NA
29	HL_5J8B_036 ➜	1/A/1434:1443	NA	NA
30	HL_5J8B_037 ➜	1/A/1498:1505	NA	NA
31	HL_5J8B_038 ➜	1/A/1537:1543	NA	NA
32	HL_5J8B_040 ➜	1/A/1611:1614	NA	NA
33	HL_5J8B_041 ➜	1/A/1657:1664	NA	NA
34	HL_5J8B_042 ➜	1/A/1676:1681	NA	NA
35	HL_5J8B_043 ➜	1/A/1737:1742	NA	NA
36	HL_5J8B_044 ➜	1/A/1758:1776	NA	NA
37	HL_5J8B_045 ➜	1/A/1782:1786	NA	NA
38	HL_5J8B_046 ➜	1/A/1807:1817	NA	NA
39	HL_5J8B_047 ➜	1/A/1836:1841	NA	NA
40	HL_5J8B_048 ➜	1/A/1894:1899	NA	NA
41	HL_5J8B_049 ➜	1/A/1931:1941	NA	NA
42	HL_5J8B_050 ➜	1/A/1970:1978	NA	NA
43	HL_5J8B_051 ➜	1/A/2048:2057	NA	NA
44	HL_5J8B_054 ➜	1/A/2259:2267	NA	NA
45	HL_5J8B_055 ➜	1/A/2275:2287	NA	NA
46	HL_5J8B_056 ➜	1/A/2314:2324	NA	NA
47	HL_5J8B_057 ➜	1/A/2335:2342	NA	NA
48	HL_5J8B_058 ➜	1/A/2366:2373	NA	NA
49	HL_5J8B_059 ➜	1/A/2385:2390	NA	NA
50	HL_5J8B_060 ➜	1/A/2415:2424	NA	NA
51	HL_5J8B_061 ➜	1/A/2482:2490	NA	NA
52	HL_5J8B_062 ➜	1/A/2539:2546	NA	NA
53	HL_5J8B_063 ➜	1/A/2562:2568	NA	NA
54	HL_5J8B_064 ➜	1/A/2605:2610	NA	NA
55	HL_5J8B_065 ➜	1/A/2669:2674	NA	NA
56	HL_5J8B_066 ➜	1/A/2712:2717	NA	NA
57	HL_5J8B_067 ➜	1/A/2757:2771	NA	NA
58	HL_5J8B_069 ➜	1/A/2828:2836	NA	NA
59	HL_5J8B_070 ➜	1/A/2865:2870	NA	NA
60	HL_5J8B_071 ➜	1/B/38:44	NA	NA
61	HL_5J8B_072 ➜	1/B/86:91	NA	NA
62	HL_5J8B_073 ➜	1/a/13:23	NA	NA
63	HL_5J8B_076 ➜	1/a/187:192	NA	NA
64	HL_5J8B_077 ➜	1/a/208:212	NA	NA
65	HL_5J8B_078 ➜	1/a/255:263	NA	NA
66	HL_5J8B_079 ➜	1/a/292:297	NA	NA
67	HL_5J8B_080 ➜	1/a/316:329	NA	NA
68	HL_5J8B_081 ➜	1/a/338:343	NA	NA
69	HL_5J8B_082 ➜	1/a/375:380	NA	NA
70	HL_5J8B_083 ➜	1/a/415:420	NA	NA
71	HL_5J8B_084 ➜	1/a/453:459	NA	NA
72	HL_5J8B_085 ➜	1/a/506:511	NA	NA
73	HL_5J8B_086 ➜	1/a/601:607	NA	NA
74	HL_5J8B_087 ➜	1/a/673:682	NA	NA
75	HL_5J8B_088 ➜	1/a/710:715	NA	NA
76	HL_5J8B_089 ➜	1/a/770:780	NA	NA
77	HL_5J8B_090 ➜	1/a/822:826	NA	NA
78	HL_5J8B_091 ➜	1/a/840:845	NA	NA
79	HL_5J8B_092 ➜	1/a/875:880	NA	NA
80	HL_5J8B_093 ➜	1/a/941:950	NA	NA
81	HL_5J8B_094 ➜	1/a/991:996	NA	NA
82	HL_5J8B_096 ➜	1/a/1059:1064	NA	NA
83	HL_5J8B_097 ➜	1/a/1072:1079	NA	NA
84	HL_5J8B_098 ➜	1/a/1117:1123	NA	NA
85	HL_5J8B_099 ➜	1/a/1148:1153	NA	NA
86	HL_5J8B_100 ➜	1/a/1247:1252	NA	NA
87	HL_5J8B_101 ➜	1/a/1296:1305	NA	NA
88	HL_5J8B_102 ➜	1/a/1338:1349	NA	NA
89	HL_5J8B_103 ➜	1/a/1430:1435	NA	NA
90	HL_5J8B_104 ➜	1/a/1493:1498	NA	NA
91	HL_5J8B_106 ➜	1/w/30:40	NA	NA
92	HL_5J8B_107 ➜	1/w/53:61	NA	NA
93	HL_5J8B_109 ➜	1/x/31:39	NA	NA
94	HL_5J8B_110 ➜	1/x/53:61	NA	NA
95	HL_5J8B_112 ➜	1/y/30:40	NA	NA
96	HL_5J8B_113 ➜	1/y/53:61	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_5J8B_008 ➜	all high RSRZ	NA
2	HL_5J8B_016 ➜	missing nts	NA
3	HL_5J8B_021 ➜	missing nts	NA
4	HL_5J8B_026 ➜	missing nts	NA
5	HL_5J8B_029 ➜	missing nts	NA
6	HL_5J8B_030 ➜	missing nts	NA
7	HL_5J8B_031 ➜	missing nts	NA
8	HL_5J8B_039 ➜	missing nts	NA
9	HL_5J8B_052 ➜	missing nts	NA
10	HL_5J8B_053 ➜	missing nts	NA
11	HL_5J8B_068 ➜	missing nts	NA
12	HL_5J8B_074 ➜	missing nts	NA
13	HL_5J8B_075 ➜	all high RSRZ	NA
14	HL_5J8B_095 ➜	incomplete nts	NA
15	HL_5J8B_105 ➜	missing nts	NA
16	HL_5J8B_108 ➜	incomplete nts	NA
17	HL_5J8B_111 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_5J8B_001 ➜	1/A/23:29,1/A/534:540	NA	NA
2	IL_5J8B_002 ➜	1/A/35:36,1/A/467:469	NA	NA
3	IL_5J8B_004 ➜	1/A/41:42,1/A/460:462	NA	NA
4	IL_5J8B_005 ➜	1/A/79:83,1/A/95:102	NA	NA
5	IL_5J8B_006 ➜	1/A/171:172,1/A/200:202	NA	NA
6	IL_5J8B_007 ➜	1/A/176:182,1/A/189:196	NA	NA
7	IL_5J8B_008 ➜	1/A/227:233,1/A/241:246	NA	NA
8	IL_5J8B_009 ➜	1/A/268:269,1/A/272:274	NA	NA
9	IL_5J8B_010 ➜	1/A/290:291,1/A/391:393	NA	NA
10	IL_5J8B_012 ➜	1/A/303:307,1/A/380:383	NA	NA
11	IL_5J8B_013 ➜	1/A/311:313,1/A/373:376	NA	NA
12	IL_5J8B_014 ➜	1/A/316:318,1/A/366:370	NA	NA
13	IL_5J8B_015 ➜	1/A/506:509,1/A/520:533	NA	NA
14	IL_5J8B_016 ➜	1/A/586:588,1/A/597:599	NA	NA
15	IL_5J8B_017 ➜	1/A/628:632,1/A/642:646	NA	NA
16	IL_5J8B_018 ➜	1/A/718:720,1/A/852:854	NA	NA
17	IL_5J8B_019 ➜	1/A/720:724,1/A/845:852	NA	NA
18	IL_5J8B_020 ➜	1/A/743:744,1/A/809:811	NA	NA
19	IL_5J8B_021 ➜	1/A/748:749,1/A/774:776	NA	NA
20	IL_5J8B_022 ➜	1/A/749:753,1/A/770:774	NA	NA
21	IL_5J8B_023 ➜	1/A/784:787,1/A/802:804	NA	NA
22	IL_5J8B_024 ➜	1/A/821:823,1/A/833:837	NA	NA
23	IL_5J8B_025 ➜	1/A/883:884,1/A/984:986	NA	NA
24	IL_5J8B_026 ➜	1/A/890:892,1/A/975:978	NA	NA
25	IL_5J8B_027 ➜	1/A/892:896,1/A/972:975	NA	NA
26	IL_5J8B_028 ➜	1/A/904:908,1/A/960:964	NA	NA
27	IL_5J8B_029 ➜	1/A/908:909,1/A/958:960	NA	NA
28	IL_5J8B_030 ➜	1/A/910:914,1/A/954:957	NA	NA
29	IL_5J8B_033 ➜	1/A/996:998,1/A/1007:1009	NA	NA
30	IL_5J8B_034 ➜	1/A/1039:1041,1/A/1204:1205	NA	NA
31	IL_5J8B_035 ➜	1/A/1043:1047,1/A/1198:1202	NA	NA
32	IL_5J8B_036 ➜	1/A/1049:1056,1/A/1195:1196	NA	NA
33	IL_5J8B_037 ➜	1/A/1056:1058,1/A/1194:1195	NA	NA
34	IL_5J8B_038 ➜	1/A/1063:1069,1/A/1184:1189	NA	NA
35	IL_5J8B_039 ➜	1/A/1069:1075,1/A/1169:1184	NA	NA
36	IL_5J8B_040 ➜	1/A/1076:1079,1/A/1166:1168	NA	NA
37	IL_5J8B_044 ➜	1/A/1240:1242,1/A/1292:1295	NA	NA
38	IL_5J8B_045 ➜	1/A/1246:1250,1/A/1285:1288	NA	NA
39	IL_5J8B_046 ➜	1/A/1252:1259,1/A/1279:1283	NA	NA
40	IL_5J8B_047 ➜	1/A/1263:1265,1/A/1274:1275	NA	NA
41	IL_5J8B_048 ➜	1/A/1307:1314,1/A/2032:2038	NA	NA
42	IL_5J8B_049 ➜	1/A/1355:1358,1/A/1648:1649	NA	NA
43	IL_5J8B_050 ➜	1/A/1364:1368,1/A/1376:1378	NA	NA
44	IL_5J8B_051 ➜	1/A/1396:1400,1/A/1421:1425	NA	NA
45	IL_5J8B_052 ➜	1/A/1402:1406,1/A/1415:1419	NA	NA
46	IL_5J8B_053 ➜	1/A/1460:1461,1/A/1628:1632	NA	NA
47	IL_5J8B_054 ➜	1/A/1462:1466,1/A/1623:1627	NA	NA
48	IL_5J8B_055 ➜	1/A/1478:1480,1/A/1603:1606	NA	NA
49	IL_5J8B_056 ➜	1/A/1482:1485,1/A/1597:1601	NA	NA
50	IL_5J8B_057 ➜	1/A/1494:1496,1/A/1508:1509	NA	NA
51	IL_5J8B_058 ➜	1/A/1497:1498,1/A/1505:1507	NA	NA
52	IL_5J8B_059 ➜	1/A/1515:1519,1/A/1565:1568	NA	NA
53	IL_5J8B_060 ➜	1/A/1527:1528,1/A/1551:1557	NA	NA
54	IL_5J8B_061 ➜	1/A/1534:1536,1/A/1544:1545	NA	NA
55	IL_5J8B_063 ➜	1/A/1697:1702,1/A/2025:2027	NA	NA
56	IL_5J8B_064 ➜	1/A/1709:1711,1/A/2016:2018	NA	NA
57	IL_5J8B_065 ➜	1/A/1712:1715,1/A/2014:2015	NA	NA
58	IL_5J8B_066 ➜	1/A/1715:1720,1/A/2011:2014	NA	NA
59	IL_5J8B_067 ➜	1/A/1732:1737,1/A/1742:1748	NA	NA
60	IL_5J8B_068 ➜	1/A/1800:1801,1/A/2001:2003	NA	NA
61	IL_5J8B_069 ➜	1/A/1828:1834,1/A/1843:1851	NA	NA
62	IL_5J8B_070 ➜	1/A/1867:1870,1/A/1923:1924	NA	NA
63	IL_5J8B_071 ➜	1/A/1871:1872,1/A/1919:1922	NA	NA
64	IL_5J8B_072 ➜	1/A/1876:1879,1/A/1914:1915	NA	NA
65	IL_5J8B_073 ➜	1/A/1881:1885,1/A/1908:1912	NA	NA
66	IL_5J8B_074 ➜	1/A/1886:1890,1/A/1903:1907	NA	NA
67	IL_5J8B_075 ➜	1/A/1954:1955,1/A/1985:1988	NA	NA
68	IL_5J8B_076 ➜	1/A/1955:1966,1/A/1982:1985	NA	NA
69	IL_5J8B_077 ➜	1/A/2071:2073,1/A/2628:2629	NA	NA
70	IL_5J8B_078 ➜	1/A/2075:2078,1/A/2622:2626	NA	NA
71	IL_5J8B_079 ➜	1/A/2088:2090,1/A/2453:2454	NA	NA
72	IL_5J8B_080 ➜	1/A/2091:2092,1/A/2449:2452	NA	NA
73	IL_5J8B_081 ➜	1/A/2102:2104,1/A/2247:2250	NA	NA
74	IL_5J8B_082 ➜	1/A/2106:2108,1/A/2243:2245	NA	NA
75	IL_5J8B_087 ➜	1/A/2308:2310,1/A/2328:2332	NA	NA
76	IL_5J8B_088 ➜	1/A/2361:2364,1/A/2375:2378	NA	NA
77	IL_5J8B_089 ➜	1/A/2412:2414,1/A/2425:2426	NA	NA
78	IL_5J8B_090 ➜	1/A/2464:2465,1/A/2509:2511	NA	NA
79	IL_5J8B_091 ➜	1/A/2465:2466,1/A/2507:2509	NA	NA
80	IL_5J8B_092 ➜	1/A/2468:2470,1/A/2504:2505	NA	NA
81	IL_5J8B_093 ➜	1/A/2470:2472,1/A/2500:2504	NA	NA
82	IL_5J8B_094 ➜	1/A/2477:2481,1/A/2491:2495	NA	NA
83	IL_5J8B_095 ➜	1/A/2518:2519,1/A/2591:2593	NA	NA
84	IL_5J8B_096 ➜	1/A/2521:2523,1/A/2585:2589	NA	NA
85	IL_5J8B_097 ➜	1/A/2523:2524,1/A/2582:2585	NA	NA
86	IL_5J8B_098 ➜	1/A/2533:2534,1/A/2551:2554	NA	NA
87	IL_5J8B_099 ➜	1/A/2602:2603,1/A/2612:2614	NA	NA
88	IL_5J8B_100 ➜	1/A/2647:2651,1/A/2786:2794	NA	NA
89	IL_5J8B_101 ➜	1/A/2663:2669,1/A/2674:2679	NA	NA
90	IL_5J8B_102 ➜	1/A/2691:2695,1/A/2737:2739	NA	NA
91	IL_5J8B_103 ➜	1/A/2698:2702,1/A/2730:2734	NA	NA
92	IL_5J8B_104 ➜	1/A/2706:2707,1/A/2722:2726	NA	NA
93	IL_5J8B_105 ➜	1/A/2749:2754,1/A/2774:2779	NA	NA
94	IL_5J8B_106 ➜	1/A/2847:2848,1/A/2887:2889	NA	NA
95	IL_5J8B_107 ➜	1/A/2852:2855,1/A/2879:2883	NA	NA
96	IL_5J8B_108 ➜	1/A/2856:2861,1/A/2874:2878	NA	NA
97	IL_5J8B_109 ➜	1/B/17:18,1/B/65:67	NA	NA
98	IL_5J8B_110 ➜	1/B/23:28,1/B/56:60	NA	NA
99	IL_5J8B_111 ➜	1/B/30:31,1/B/51:54	NA	NA
100	IL_5J8B_112 ➜	1/B/34:38,1/B/44:48	NA	NA
101	IL_5J8B_113 ➜	1/B/71:79,1/B/98:106	NA	NA
102	IL_5J8B_114 ➜	1/a/31:33,1/a/536:537	NA	NA
103	IL_5J8B_115 ➜	1/a/45:46,1/a/392:394	NA	NA
104	IL_5J8B_116 ➜	1/a/48:53,1/a/355:357	NA	NA
105	IL_5J8B_117 ➜	1/a/55:57,1/a/352:353	NA	NA
106	IL_5J8B_118 ➜	1/a/64:67,1/a/97:98	NA	NA
107	IL_5J8B_119 ➜	1/a/68:70,1/a/94:96	NA	NA
108	IL_5J8B_120 ➜	1/a/123:126,1/a/227:228	NA	NA
109	IL_5J8B_121 ➜	1/a/127:131,1/a/223:226	NA	NA
110	IL_5J8B_122 ➜	1/a/143:148,1/a/163:169	NA	NA
111	IL_5J8B_123 ➜	1/a/181:183,1/a/196:198	NA	NA
112	IL_5J8B_124 ➜	1/a/238:243,1/a/273:280	NA	NA
113	IL_5J8B_125 ➜	1/a/245:248,1/a/270:271	NA	NA
114	IL_5J8B_126 ➜	1/a/288:289,1/a/300:304	NA	NA
115	IL_5J8B_127 ➜	1/a/363:365,1/a/388:389	NA	NA
116	IL_5J8B_128 ➜	1/a/367:371,1/a/385:386	NA	NA
117	IL_5J8B_129 ➜	1/a/371:372,1/a/383:385	NA	NA
118	IL_5J8B_130 ➜	1/a/405:412,1/a/423:429	NA	NA
119	IL_5J8B_131 ➜	1/a/441:445,1/a/468:473	NA	NA
120	IL_5J8B_132 ➜	1/a/445:450,1/a/462:468	NA	NA
121	IL_5J8B_133 ➜	1/a/488:495,1/a/524:525	NA	NA
122	IL_5J8B_134 ➜	1/a/499:505,1/a/512:520	NA	NA
123	IL_5J8B_135 ➜	1/a/553:559,1/a/858:859	NA	NA
124	IL_5J8B_136 ➜	1/a/564:568,1/a/741:745	NA	NA
125	IL_5J8B_137 ➜	1/a/578:580,1/a/628:629	NA	NA
126	IL_5J8B_138 ➜	1/a/581:582,1/a/624:627	NA	NA
127	IL_5J8B_139 ➜	1/a/589:596,1/a/612:617	NA	NA
128	IL_5J8B_140 ➜	1/a/638:639,1/a/735:738	NA	NA
129	IL_5J8B_141 ➜	1/a/641:642,1/a/731:733	NA	NA
130	IL_5J8B_142 ➜	1/a/646:650,1/a/724:727	NA	NA
131	IL_5J8B_143 ➜	1/a/657:662,1/a/696:701	NA	NA
132	IL_5J8B_144 ➜	1/a/667:672,1/a/683:691	NA	NA
133	IL_5J8B_145 ➜	1/a/758:762,1/a/788:789	NA	NA
134	IL_5J8B_146 ➜	1/a/763:767,1/a/783:787	NA	NA
135	IL_5J8B_147 ➜	1/a/865:872,1/a/883:888	NA	NA
136	IL_5J8B_148 ➜	1/a/900:901,1/a/1376:1378	NA	NA
137	IL_5J8B_149 ➜	1/a/903:905,1/a/1373:1374	NA	NA
138	IL_5J8B_150 ➜	1/a/911:913,1/a/1363:1367	NA	NA
139	IL_5J8B_151 ➜	1/a/931:932,1/a/1208:1210	NA	NA
140	IL_5J8B_152 ➜	1/a/971:975,1/a/1027:1028	NA	NA
141	IL_5J8B_153 ➜	1/a/1031:1033,1/a/1190:1191	NA	NA
142	IL_5J8B_154 ➜	1/a/1035:1039,1/a/1186:1188	NA	NA
143	IL_5J8B_155 ➜	1/a/1040:1041,1/a/1181:1185	NA	NA
144	IL_5J8B_156 ➜	1/a/1043:1044,1/a/1177:1179	NA	NA
145	IL_5J8B_157 ➜	1/a/1044:1046,1/a/1175:1177	NA	NA
146	IL_5J8B_158 ➜	1/a/1107:1111,1/a/1126:1132	NA	NA
147	IL_5J8B_160 ➜	1/a/1229:1235,1/a/1266:1272	NA	NA
148	IL_5J8B_161 ➜	1/a/1237:1240,1/a/1259:1264	NA	NA
149	IL_5J8B_162 ➜	1/a/1241:1242,1/a/1256:1258	NA	NA
150	IL_5J8B_163 ➜	1/a/1242:1244,1/a/1255:1256	NA	NA
151	IL_5J8B_164 ➜	1/a/1285:1290,1/a/1311:1316	NA	NA
152	IL_5J8B_165 ➜	1/a/1382:1384,1/a/1479:1482	NA	NA
153	IL_5J8B_166 ➜	1/a/1384:1387,1/a/1475:1479	NA	NA
154	IL_5J8B_167 ➜	1/a/1388:1390,1/a/1472:1474	NA	NA
155	IL_5J8B_168 ➜	1/a/1390:1392,1/a/1469:1472	NA	NA
156	IL_5J8B_169 ➜	1/a/1395:1397,1/a/1464:1466	NA	NA
157	IL_5J8B_170 ➜	1/a/1399:1402,1/a/1459:1462	NA	NA
158	IL_5J8B_171 ➜	1/a/1414:1418,1/a/1444:1447	NA	NA
159	IL_5J8B_172 ➜	1/a/1418:1420,1/a/1442:1444	NA	NA
160	IL_5J8B_173 ➜	1/a/1423:1428,1/a/1437:1439	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_5J8B_003 ➜	incomplete nts	NA
2	IL_5J8B_011 ➜	missing nts	NA
3	IL_5J8B_031 ➜	incomplete nts	NA
4	IL_5J8B_032 ➜	missing nts	NA
5	IL_5J8B_041 ➜	missing nts	NA
6	IL_5J8B_042 ➜	missing nts	NA
7	IL_5J8B_043 ➜	missing nts	NA
8	IL_5J8B_062 ➜	missing nts	NA
9	IL_5J8B_083 ➜	missing nts	NA
10	IL_5J8B_084 ➜	missing nts	NA
11	IL_5J8B_085 ➜	missing nts	NA
12	IL_5J8B_086 ➜	missing nts	NA
13	IL_5J8B_159 ➜	incomplete nts	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_5J8B_001 ➜	1/A/29:30,1/A/499:506,1/A/533:534	NA	NA
2	J3_5J8B_002 ➜	1/A/54:55,1/A/68:74,1/A/107:111	NA	NA
3	J3_5J8B_003 ➜	1/A/257:261,1/A/281:288,1/A/395:396	NA	NA
4	J3_5J8B_004 ➜	1/A/729:735,1/A/819:821,1/A/837:840	NA	NA
5	J3_5J8B_005 ➜	1/A/744:746,1/A/778:782,1/A/806:809	NA	NA
6	J3_5J8B_007 ➜	1/A/1343:1348,1/A/1670:1672,1/A/1685:1688	NA	NA
7	J3_5J8B_008 ➜	1/A/1351:1354,1/A/1650:1656,1/A/1665:1667	NA	NA
8	J3_5J8B_009 ➜	1/A/1389:1395,1/A/1426:1430,1/A/1447:1448	NA	NA
9	J3_5J8B_010 ➜	1/A/2112:2114,1/A/2217:2221,1/A/2234:2239	NA	NA
10	J3_5J8B_011 ➜	1/A/2306:2308,1/A/2332:2334,1/A/2343:2348	NA	NA
11	J3_5J8B_012 ➜	1/A/2528:2531,1/A/2556:2558,1/A/2572:2578	NA	NA
12	J3_5J8B_014 ➜	1/A/2823:2824,1/A/2840:2845,1/A/2891:2895	NA	NA
13	J3_5J8B_015 ➜	1/B/11:16,1/B/68:69,1/B/108:110	NA	NA
14	J3_5J8B_016 ➜	1/a/47:48,1/a/357:363,1/a/389:391	NA	NA
15	J3_5J8B_017 ➜	1/a/570:572,1/a/635:638,1/a/738:739	NA	NA
16	J3_5J8B_018 ➜	1/a/656:657,1/a/701:709,1/a/716:718	NA	NA
17	J3_5J8B_019 ➜	1/a/810:813,1/a/835:839,1/a/846:852	NA	NA
18	J3_5J8B_020 ➜	1/a/914:917,1/a/1326:1332,1/a/1355:1362	NA	NA
19	J3_5J8B_021 ➜	1/a/921:924,1/a/1217:1219,1/a/1319:1322	NA	NA
20	J3_5J8B_023 ➜	1/a/968:971,1/a/1028:1030,1/a/1192:1197	NA	NA
21	J3_5J8B_025 ➜	1/a/1046:1051,1/a/1090:1096,1/a/1169:1175	NA	NA
22	J3_5J8B_026 ➜	1/a/1056:1057,1/a/1066:1070,1/a/1081:1085	NA	NA
23	J3_5J8B_027 ➜	1/a/1099:1101,1/a/1138:1144,1/a/1157:1166	NA	NA
24	J3_5J8B_028 ➜	1/a/1219:1223,1/a/1278:1285,1/a/1316:1319	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	J3_5J8B_006 ➜	missing nts	NA
2	J3_5J8B_013 ➜	missing nts	NA
3	J3_5J8B_022 ➜	incomplete nts	NA
4	J3_5J8B_024 ➜	all high RSRZ	NA

Coloring options: Nucleotide numbers

5J8B Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops