5J8B Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5J8B_001 | 1/A/57:66 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_5J8B_002 | 1/A/85:93 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_5J8B_003 | 1/A/120:125 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
| HL_5J8B_004 | 1/A/135:140 | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.3 | |
| HL_5J8B_005 | 1/A/182:189 | No text annotation Not in a motif group | geometric HL_7RQB_006 HL_06192.2 | |
| HL_5J8B_006 | 1/A/213:218 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_5J8B_007 | 1/A/234:240 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_5J8B_009 | 1/A/328:335 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_5J8B_010 | 1/A/342:346 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_75407.1 | |
| HL_5J8B_011 | 1/A/350:358 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.9 | |
| HL_5J8B_012 | 1/A/408:418 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_5J8B_013 | 1/A/436:443 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_5J8B_014 | 1/A/487:492 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.2 | |
| HL_5J8B_015 | 1/A/512:517 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.2 | |
| HL_5J8B_017 | 1/A/588:597 | No text annotation Not in a motif group | homologous HL_7RQB_018 HL_89380.2 | |
| HL_5J8B_018 | 1/A/634:640 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
| HL_5J8B_019 | 1/A/653:658 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.2 | |
| HL_5J8B_020 | 1/A/665:671 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.2 | |
| HL_5J8B_022 | 1/A/758:765 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_5J8B_023 | 1/A/790:799 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_5J8B_024 | 1/A/825:831 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_74322.1 | |
| HL_5J8B_025 | 1/A/872:877 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_5J8B_027 | 1/A/999:1006 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.2 | |
| HL_5J8B_028 | 1/A/1023:1030 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_5J8B_032 | 1/A/1267:1272 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.2 | |
| HL_5J8B_033 | 1/A/1326:1334 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_5J8B_034 | 1/A/1369:1375 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_5J8B_035 | 1/A/1408:1413 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_5J8B_036 | 1/A/1434:1443 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_5J8B_037 | 1/A/1498:1505 | No text annotation Not in a motif group | geometric HL_7RQB_037 HL_32426.1 | |
| HL_5J8B_038 | 1/A/1537:1543 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_5J8B_040 | 1/A/1611:1614 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_5J8B_041 | 1/A/1657:1664 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_5J8B_042 | 1/A/1676:1681 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_5J8B_043 | 1/A/1737:1742 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_03562.2 | |
| HL_5J8B_044 | 1/A/1758:1776 | No text annotation Not in a motif group | ||
| HL_5J8B_045 | 1/A/1782:1786 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_5J8B_046 | 1/A/1807:1817 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_5J8B_047 | 1/A/1836:1841 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.2 | |
| HL_5J8B_048 | 1/A/1894:1899 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.2 | |
| HL_5J8B_049 | 1/A/1931:1941 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_5J8B_050 | 1/A/1970:1978 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_5J8B_051 | 1/A/2048:2057 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_5J8B_054 | 1/A/2259:2267 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_5J8B_055 | 1/A/2275:2287 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_5J8B_056 | 1/A/2314:2324 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_5J8B_057 | 1/A/2335:2342 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_5J8B_058 | 1/A/2366:2373 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_5J8B_059 | 1/A/2385:2390 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.2 | |
| HL_5J8B_060 | 1/A/2415:2424 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_5J8B_061 | 1/A/2482:2490 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_06192.2 | |
| HL_5J8B_062 | 1/A/2539:2546 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_91104.1 | |
| HL_5J8B_063 | 1/A/2562:2568 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_5J8B_064 | 1/A/2605:2610 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.2 | |
| HL_5J8B_065 | 1/A/2669:2674 | GNRA Not in a motif group | geometric HL_3LQX_001 HL_42097.2 | |
| HL_5J8B_066 | 1/A/2712:2717 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_5J8B_067 | 1/A/2757:2771 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_5J8B_069 | 1/A/2828:2836 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_5J8B_070 | 1/A/2865:2870 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.2 | |
| HL_5J8B_071 | 1/B/38:44 | No text annotation Not in a motif group | homologous HL_7RQB_070 HL_87939.1 | |
| HL_5J8B_072 | 1/B/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_42097.2 | |
| HL_5J8B_073 | 1/a/13:23 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_5J8B_076 | 1/a/187:192 | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_5J8B_077 | 1/a/208:212 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_91104.1 | |
| HL_5J8B_078 | 1/a/255:263 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_5J8B_079 | 1/a/292:297 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.2 | |
| HL_5J8B_080 | 1/a/316:329 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_5J8B_081 | 1/a/338:343 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_5J8B_082 | 1/a/375:380 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.2 | |
| HL_5J8B_083 | 1/a/415:420 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_5J8B_084 | 1/a/453:459 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_5J8B_085 | 1/a/506:511 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_5J8B_086 | 1/a/601:607 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_5J8B_087 | 1/a/673:682 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
| HL_5J8B_088 | 1/a/710:715 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_5J8B_089 | 1/a/770:780 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_5J8B_090 | 1/a/822:826 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_53837.1 | |
| HL_5J8B_091 | 1/a/840:845 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.2 | |
| HL_5J8B_092 | 1/a/875:880 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.2 | |
| HL_5J8B_093 | 1/a/941:950 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_5J8B_094 | 1/a/991:996 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.2 | |
| HL_5J8B_096 | 1/a/1059:1064 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.2 | |
| HL_5J8B_097 | 1/a/1072:1079 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_5J8B_098 | 1/a/1117:1123 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_5J8B_099 | 1/a/1148:1153 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.2 | |
| HL_5J8B_100 | 1/a/1247:1252 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.2 | |
| HL_5J8B_101 | 1/a/1296:1305 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_5J8B_102 | 1/a/1338:1349 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_5J8B_103 | 1/a/1430:1435 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
| HL_5J8B_104 | 1/a/1493:1498 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_5J8B_106 | 1/w/30:40 | No text annotation Not in a motif group | homologous HL_1B23_002 NA | |
| HL_5J8B_107 | 1/w/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V9Q_215 HL_22280.1 | |
| HL_5J8B_109 | 1/x/31:39 | No text annotation Not in a motif group | homologous HL_5E81_212 NA | |
| HL_5J8B_110 | 1/x/53:61 | No text annotation Not in a motif group | homologous HL_5L4O_003 NA | |
| HL_5J8B_112 | 1/y/30:40 | No text annotation Not in a motif group | homologous HL_4WQ1_224 NA | |
| HL_5J8B_113 | 1/y/53:61 | No text annotation Not in a motif group | homologous HL_1QF6_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5J8B_008 | No text annotation | ||
| HL_5J8B_016 | No text annotation | ||
| HL_5J8B_021 | No text annotation | ||
| HL_5J8B_026 | No text annotation | ||
| HL_5J8B_029 | No text annotation | ||
| HL_5J8B_030 | No text annotation | ||
| HL_5J8B_031 | No text annotation | ||
| HL_5J8B_039 | No text annotation | ||
| HL_5J8B_052 | UNCG | ||
| HL_5J8B_053 | No text annotation | ||
| HL_5J8B_068 | No text annotation | ||
| HL_5J8B_074 | No text annotation | ||
| HL_5J8B_075 | No text annotation | ||
| HL_5J8B_095 | No text annotation | ||
| HL_5J8B_105 | No text annotation | ||
| HL_5J8B_108 | No text annotation | ||
| HL_5J8B_111 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5J8B_001 | 1/A/23:29, 1/A/534:540 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_5J8B_002 | 1/A/35:36, 1/A/467:469 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.3 | |
| IL_5J8B_004 | 1/A/41:42, 1/A/460:462 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
| IL_5J8B_005 | 1/A/79:83, 1/A/95:102 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_5J8B_006 | 1/A/171:172, 1/A/200:202 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_5J8B_007 | 1/A/176:182, 1/A/189:196 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_5J8B_008 | 1/A/227:233, 1/A/241:246 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_5J8B_009 | 1/A/268:269, 1/A/272:274 | Single bulged U Not in a motif group | homologous IL_7RQB_008 IL_83039.14 | |
| IL_5J8B_010 | 1/A/290:291, 1/A/391:393 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_27635.2 | |
| IL_5J8B_012 | 1/A/303:307, 1/A/380:383 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
| IL_5J8B_013 | 1/A/311:313, 1/A/373:376 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_5J8B_014 | 1/A/316:318, 1/A/366:370 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_5J8B_015 | 1/A/506:509, 1/A/520:533 | No text annotation Not in a motif group | geometric IL_7RQB_014 IL_60992.6 | |
| IL_5J8B_016 | 1/A/586:588, 1/A/597:599 | No text annotation Not in a motif group | geometric IL_4WF9_017 IL_95997.1 | |
| IL_5J8B_017 | 1/A/628:632, 1/A/642:646 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_5J8B_018 | 1/A/718:720, 1/A/852:854 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_5J8B_019 | 1/A/720:724, 1/A/845:852 | No text annotation Not in a motif group | homologous IL_7RQB_018 IL_17470.6 | |
| IL_5J8B_020 | 1/A/743:744, 1/A/809:811 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_37497.3 | |
| IL_5J8B_021 | 1/A/748:749, 1/A/774:776 | Single bulged G Not in a motif group | geometric IL_7RQB_020 IL_00225.3 | |
| IL_5J8B_022 | 1/A/749:753, 1/A/770:774 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_5J8B_023 | 1/A/784:787, 1/A/802:804 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_5J8B_024 | 1/A/821:823, 1/A/833:837 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.6 | |
| IL_5J8B_025 | 1/A/883:884, 1/A/984:986 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_5J8B_026 | 1/A/890:892, 1/A/975:978 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 IL_52767.2 | |
| IL_5J8B_027 | 1/A/892:896, 1/A/972:975 | No text annotation Not in a motif group | geometric IL_7RQB_026 IL_94165.1 | |
| IL_5J8B_028 | 1/A/904:908, 1/A/960:964 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_7RQB_027 IL_38862.1 | |
| IL_5J8B_029 | 1/A/908:909, 1/A/958:960 | Minor groove platform Not in a motif group | geometric IL_7RQB_028 IL_42622.2 | |
| IL_5J8B_030 | 1/A/910:914, 1/A/954:957 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_5J8B_033 | 1/A/996:998, 1/A/1007:1009 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_5J8B_034 | 1/A/1039:1041, 1/A/1204:1205 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_5J8B_035 | 1/A/1043:1047, 1/A/1198:1202 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_5J8B_036 | 1/A/1049:1056, 1/A/1195:1196 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.7 | |
| IL_5J8B_037 | 1/A/1056:1058, 1/A/1194:1195 | Single bulged U Not in a motif group | homologous IL_7RQB_038 IL_83039.14 | |
| IL_5J8B_038 | 1/A/1063:1069, 1/A/1184:1189 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_5J8B_039 | 1/A/1069:1075, 1/A/1169:1184 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_5J8B_040 | 1/A/1076:1079, 1/A/1166:1168 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_5J8B_044 | 1/A/1240:1242, 1/A/1292:1295 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.2 | |
| IL_5J8B_045 | 1/A/1246:1250, 1/A/1285:1288 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_5J8B_046 | 1/A/1252:1259, 1/A/1279:1283 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_5J8B_047 | 1/A/1263:1265, 1/A/1274:1275 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.3 | |
| IL_5J8B_048 | 1/A/1307:1314, 1/A/2032:2038 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_5J8B_049 | 1/A/1355:1358, 1/A/1648:1649 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_5J8B_050 | 1/A/1364:1368, 1/A/1376:1378 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_5J8B_051 | 1/A/1396:1400, 1/A/1421:1425 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_5J8B_052 | 1/A/1402:1406, 1/A/1415:1419 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_5J8B_053 | 1/A/1460:1461, 1/A/1628:1632 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_5J8B_054 | 1/A/1462:1466, 1/A/1623:1627 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
| IL_5J8B_055 | 1/A/1478:1480, 1/A/1603:1606 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_5J8B_056 | 1/A/1482:1485, 1/A/1597:1601 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_5J8B_057 | 1/A/1494:1496, 1/A/1508:1509 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
| IL_5J8B_058 | 1/A/1497:1498, 1/A/1505:1507 | Single bulged A Not in a motif group | homologous IL_7RQB_059 IL_37497.3 | |
| IL_5J8B_059 | 1/A/1515:1519, 1/A/1565:1568 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_5J8B_060 | 1/A/1527:1528, 1/A/1551:1557 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_5J8B_061 | 1/A/1534:1536, 1/A/1544:1545 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.3 | |
| IL_5J8B_063 | 1/A/1697:1702, 1/A/2025:2027 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_5J8B_064 | 1/A/1709:1711, 1/A/2016:2018 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_5J8B_065 | 1/A/1712:1715, 1/A/2014:2015 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
| IL_5J8B_066 | 1/A/1715:1720, 1/A/2011:2014 | Intercalated tWH Not in a motif group | homologous IL_7RQB_067 IL_82842.2 | |
| IL_5J8B_067 | 1/A/1732:1737, 1/A/1742:1748 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_5J8B_068 | 1/A/1800:1801, 1/A/2001:2003 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.3 | |
| IL_5J8B_069 | 1/A/1828:1834, 1/A/1843:1851 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_5J8B_070 | 1/A/1867:1870, 1/A/1923:1924 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_5J8B_071 | 1/A/1871:1872, 1/A/1919:1922 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 IL_16396.2 | |
| IL_5J8B_072 | 1/A/1876:1879, 1/A/1914:1915 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_5J8B_073 | 1/A/1881:1885, 1/A/1908:1912 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_5J8B_074 | 1/A/1886:1890, 1/A/1903:1907 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_5J8B_075 | 1/A/1954:1955, 1/A/1985:1988 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 IL_59677.2 | |
| IL_5J8B_076 | 1/A/1955:1966, 1/A/1982:1985 | No text annotation Not in a motif group | geometric IL_7A0S_072 IL_81589.2 | |
| IL_5J8B_077 | 1/A/2071:2073, 1/A/2628:2629 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.2 | |
| IL_5J8B_078 | 1/A/2075:2078, 1/A/2622:2626 | No text annotation Not in a motif group | ||
| IL_5J8B_079 | 1/A/2088:2090, 1/A/2453:2454 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.14 | |
| IL_5J8B_080 | 1/A/2091:2092, 1/A/2449:2452 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_5J8B_081 | 1/A/2102:2104, 1/A/2247:2250 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_5J8B_082 | 1/A/2106:2108, 1/A/2243:2245 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
| IL_5J8B_087 | 1/A/2308:2310, 1/A/2328:2332 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_088 IL_38958.7 | |
| IL_5J8B_088 | 1/A/2361:2364, 1/A/2375:2378 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_5J8B_089 | 1/A/2412:2414, 1/A/2425:2426 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.2 | |
| IL_5J8B_090 | 1/A/2464:2465, 1/A/2509:2511 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.2 | |
| IL_5J8B_091 | 1/A/2465:2466, 1/A/2507:2509 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.2 | |
| IL_5J8B_092 | 1/A/2468:2470, 1/A/2504:2505 | Major groove platform Not in a motif group | geometric IL_7A0S_085 IL_27635.2 | |
| IL_5J8B_093 | 1/A/2470:2472, 1/A/2500:2504 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_5J8B_094 | 1/A/2477:2481, 1/A/2491:2495 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_5J8B_095 | 1/A/2518:2519, 1/A/2591:2593 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_5J8B_096 | 1/A/2521:2523, 1/A/2585:2589 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
| IL_5J8B_097 | 1/A/2523:2524, 1/A/2582:2585 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.2 | |
| IL_5J8B_098 | 1/A/2533:2534, 1/A/2551:2554 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
| IL_5J8B_099 | 1/A/2602:2603, 1/A/2612:2614 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.3 | |
| IL_5J8B_100 | 1/A/2647:2651, 1/A/2786:2794 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_5J8B_101 | 1/A/2663:2669, 1/A/2674:2679 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7RQB_103 IL_16458.1 | |
| IL_5J8B_102 | 1/A/2691:2695, 1/A/2737:2739 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_5J8B_103 | 1/A/2698:2702, 1/A/2730:2734 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_5J8B_104 | 1/A/2706:2707, 1/A/2722:2726 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
| IL_5J8B_105 | 1/A/2749:2754, 1/A/2774:2779 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_5J8B_106 | 1/A/2847:2848, 1/A/2887:2889 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_5J8B_107 | 1/A/2852:2855, 1/A/2879:2883 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_5J8B_108 | 1/A/2856:2861, 1/A/2874:2878 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_5J8B_109 | 1/B/17:18, 1/B/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.3 | |
| IL_5J8B_110 | 1/B/23:28, 1/B/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_5J8B_111 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V9F_103 IL_09061.6 | |
| IL_5J8B_112 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_5J8B_113 | 1/B/71:79, 1/B/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_5J8B_114 | 1/a/31:33, 1/a/536:537 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.3 | |
| IL_5J8B_115 | 1/a/45:46, 1/a/392:394 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.3 | |
| IL_5J8B_116 | 1/a/48:53, 1/a/355:357 | No text annotation Not in a motif group | geometric IL_4LFB_003 IL_11178.1 | |
| IL_5J8B_117 | 1/a/55:57, 1/a/352:353 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_5J8B_118 | 1/a/64:67, 1/a/97:98 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_5J8B_119 | 1/a/68:70, 1/a/94:96 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_5J8B_120 | 1/a/123:126, 1/a/227:228 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_5J8B_121 | 1/a/127:131, 1/a/223:226 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_5J8B_122 | 1/a/143:148, 1/a/163:169 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_5J8B_123 | 1/a/181:183, 1/a/196:198 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_5J8B_124 | 1/a/238:243, 1/a/273:280 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_5J8B_125 | 1/a/245:248, 1/a/270:271 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_5J8B_126 | 1/a/288:289, 1/a/300:304 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_5J8B_127 | 1/a/363:365, 1/a/388:389 | Single bulged U Not in a motif group | geometric IL_4LFB_014 IL_83039.14 | |
| IL_5J8B_128 | 1/a/367:371, 1/a/385:386 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_5J8B_129 | 1/a/371:372, 1/a/383:385 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.3 | |
| IL_5J8B_130 | 1/a/405:412, 1/a/423:429 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_5J8B_131 | 1/a/441:445, 1/a/468:473 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_5J8B_132 | 1/a/445:450, 1/a/462:468 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
| IL_5J8B_133 | 1/a/488:495, 1/a/524:525 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_5J8B_134 | 1/a/499:505, 1/a/512:520 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_5J8B_135 | 1/a/553:559, 1/a/858:859 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_69996.1 | |
| IL_5J8B_136 | 1/a/564:568, 1/a/741:745 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_5J8B_137 | 1/a/578:580, 1/a/628:629 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.2 | |
| IL_5J8B_138 | 1/a/581:582, 1/a/624:627 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_5J8B_139 | 1/a/589:596, 1/a/612:617 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_5J8B_140 | 1/a/638:639, 1/a/735:738 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4LFB_027 IL_50694.2 | |
| IL_5J8B_141 | 1/a/641:642, 1/a/731:733 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.2 | |
| IL_5J8B_142 | 1/a/646:650, 1/a/724:727 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_5J8B_143 | 1/a/657:662, 1/a/696:701 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_5J8B_144 | 1/a/667:672, 1/a/683:691 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_5J8B_145 | 1/a/758:762, 1/a/788:789 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_5J8B_146 | 1/a/763:767, 1/a/783:787 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_5J8B_147 | 1/a/865:872, 1/a/883:888 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_5J8B_148 | 1/a/900:901, 1/a/1376:1378 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.3 | |
| IL_5J8B_149 | 1/a/903:905, 1/a/1373:1374 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.3 | |
| IL_5J8B_150 | 1/a/911:913, 1/a/1363:1367 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_5J8B_151 | 1/a/931:932, 1/a/1208:1210 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_5J8B_152 | 1/a/971:975, 1/a/1027:1028 | Minor groove platform Not in a motif group | geometric IL_4LFB_039 IL_47078.1 | |
| IL_5J8B_153 | 1/a/1031:1033, 1/a/1190:1191 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.14 | |
| IL_5J8B_154 | 1/a/1035:1039, 1/a/1186:1188 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_5J8B_155 | 1/a/1040:1041, 1/a/1181:1185 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_5J8B_156 | 1/a/1043:1044, 1/a/1177:1179 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.14 | |
| IL_5J8B_157 | 1/a/1044:1046, 1/a/1175:1177 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_5J8B_158 | 1/a/1107:1111, 1/a/1126:1132 | No text annotation Not in a motif group | homologous IL_4LFB_048 IL_85222.1 | |
| IL_5J8B_160 | 1/a/1229:1235, 1/a/1266:1272 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_5J8B_161 | 1/a/1237:1240, 1/a/1259:1264 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_5J8B_162 | 1/a/1241:1242, 1/a/1256:1258 | Not an internal loop Not in a motif group | geometric IL_4LFB_053 IL_93353.1 | |
| IL_5J8B_163 | 1/a/1242:1244, 1/a/1255:1256 | Minor groove platform Not in a motif group | homologous IL_4LFB_054 IL_93353.1 | |
| IL_5J8B_164 | 1/a/1285:1290, 1/a/1311:1316 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_5J8B_165 | 1/a/1382:1384, 1/a/1479:1482 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_5J8B_166 | 1/a/1384:1387, 1/a/1475:1479 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_5J8B_167 | 1/a/1388:1390, 1/a/1472:1474 | No text annotation Not in a motif group | geometric IL_5MWI_004 IL_95997.1 | |
| IL_5J8B_168 | 1/a/1390:1392, 1/a/1469:1472 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_5J8B_169 | 1/a/1395:1397, 1/a/1464:1466 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_5J8B_170 | 1/a/1399:1402, 1/a/1459:1462 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_5J8B_171 | 1/a/1414:1418, 1/a/1444:1447 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.1 | |
| IL_5J8B_172 | 1/a/1418:1420, 1/a/1442:1444 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_95997.1 | |
| IL_5J8B_173 | 1/a/1423:1428, 1/a/1437:1439 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5J8B_003 | Not an internal loop | ||
| IL_5J8B_011 | No text annotation | ||
| IL_5J8B_031 | No text annotation | ||
| IL_5J8B_032 | No text annotation | ||
| IL_5J8B_041 | No text annotation | ||
| IL_5J8B_042 | No text annotation | ||
| IL_5J8B_043 | Major groove platform with extra cWW | ||
| IL_5J8B_062 | No text annotation | ||
| IL_5J8B_083 | No text annotation | ||
| IL_5J8B_084 | No text annotation | ||
| IL_5J8B_085 | No text annotation | ||
| IL_5J8B_086 | No text annotation | ||
| IL_5J8B_159 | Minor groove platform |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5J8B_001 | 1/A/29:30, 1/A/499:506, 1/A/533:534 | No text annotation Not in a motif group | ||
| J3_5J8B_002 | 1/A/54:55, 1/A/68:74, 1/A/107:111 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
| J3_5J8B_003 | 1/A/257:261, 1/A/281:288, 1/A/395:396 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
| J3_5J8B_004 | 1/A/729:735, 1/A/819:821, 1/A/837:840 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_5J8B_005 | 1/A/744:746, 1/A/778:782, 1/A/806:809 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_5J8B_007 | 1/A/1343:1348, 1/A/1670:1672, 1/A/1685:1688 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_5J8B_008 | 1/A/1351:1354, 1/A/1650:1656, 1/A/1665:1667 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_5J8B_009 | 1/A/1389:1395, 1/A/1426:1430, 1/A/1447:1448 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_5J8B_010 | 1/A/2112:2114, 1/A/2217:2221, 1/A/2234:2239 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_5J8B_011 | 1/A/2306:2308, 1/A/2332:2334, 1/A/2343:2348 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
| J3_5J8B_012 | 1/A/2528:2531, 1/A/2556:2558, 1/A/2572:2578 | No text annotation Not in a motif group | ||
| J3_5J8B_014 | 1/A/2823:2824, 1/A/2840:2845, 1/A/2891:2895 | No text annotation Not in a motif group | homologous J3_7RQB_014 NA | |
| J3_5J8B_015 | 1/B/11:16, 1/B/68:69, 1/B/108:110 | No text annotation Not in a motif group | homologous J3_7RQB_015 NA | |
| J3_5J8B_016 | 1/a/47:48, 1/a/357:363, 1/a/389:391 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_5J8B_017 | 1/a/570:572, 1/a/635:638, 1/a/738:739 | No text annotation Not in a motif group | ||
| J3_5J8B_018 | 1/a/656:657, 1/a/701:709, 1/a/716:718 | No text annotation Not in a motif group | ||
| J3_5J8B_019 | 1/a/810:813, 1/a/835:839, 1/a/846:852 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_5J8B_020 | 1/a/914:917, 1/a/1326:1332, 1/a/1355:1362 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_5J8B_021 | 1/a/921:924, 1/a/1217:1219, 1/a/1319:1322 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_5J8B_023 | 1/a/968:971, 1/a/1028:1030, 1/a/1192:1197 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_5J8B_025 | 1/a/1046:1051, 1/a/1090:1096, 1/a/1169:1175 | No text annotation Not in a motif group | ||
| J3_5J8B_026 | 1/a/1056:1057, 1/a/1066:1070, 1/a/1081:1085 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_5J8B_027 | 1/a/1099:1101, 1/a/1138:1144, 1/a/1157:1166 | No text annotation Not in a motif group | ||
| J3_5J8B_028 | 1/a/1219:1223, 1/a/1278:1285, 1/a/1316:1319 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5J8B_006 | No text annotation | ||
| J3_5J8B_013 | No text annotation | ||
| J3_5J8B_022 | No text annotation | ||
| J3_5J8B_024 | No text annotation |
Coloring options: