5T7V Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5T7V_001 | 1/A/13:23 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_5T7V_003 | 1/A/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_5T7V_004 | 1/A/267:275 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_5T7V_005 | 1/A/304:309 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_5T7V_006 | 1/A/330:340 | No text annotation Not in a motif group | ||
| HL_5T7V_007 | 1/A/350:355 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_5T7V_008 | 1/A/386:394 | No text annotation Not in a motif group | ||
| HL_5T7V_009 | 1/A/425:434 | No text annotation Not in a motif group | ||
| HL_5T7V_010 | 1/A/452:498 | No text annotation Not in a motif group | ||
| HL_5T7V_011 | 1/A/530:535 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_5T7V_012 | 1/A/623:633 | No text annotation Not in a motif group | ||
| HL_5T7V_013 | 1/A/697:706 | No text annotation Not in a motif group | geometric HL_6CZR_086 HL_12326.1 | |
| HL_5T7V_014 | 1/A/734:739 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_5T7V_015 | 1/A/794:804 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_5T7V_016 | 1/A/845:858 | No text annotation Not in a motif group | ||
| HL_5T7V_017 | 1/A/871:876 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_5T7V_018 | 1/A/906:911 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_5T7V_019 | 1/A/972:981 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_5T7V_020 | 1/A/1087:1092 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_5T7V_021 | 1/A/1100:1107 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_71554.2 | |
| HL_5T7V_023 | 1/A/1172:1184 | No text annotation Not in a motif group | ||
| HL_5T7V_024 | 1/A/1269:1286 | No text annotation Not in a motif group | ||
| HL_5T7V_025 | 1/A/1324:1333 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_5T7V_026 | 1/A/1459:1465 | No text annotation Not in a motif group | geometric HL_6VMY_004 HL_91058.1 | |
| HL_5T7V_027 | 1/A/1526:1531 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_5T7V_028 | 1/B/57:70 | No text annotation Not in a motif group | ||
| HL_5T7V_029 | 1/B/87:95 | No text annotation Not in a motif group | ||
| HL_5T7V_030 | 1/B/122:127 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_5T7V_031 | 1/B/136:143 | No text annotation Not in a motif group | homologous HL_4WF9_004 HL_84085.2 | |
| HL_5T7V_032 | 1/B/158:170 | No text annotation Not in a motif group | geometric HL_2ZNI_001 HL_75407.1 | |
| HL_5T7V_033 | 1/B/190:212 | No text annotation Not in a motif group | ||
| HL_5T7V_034 | 1/B/228:233 | No text annotation Not in a motif group | homologous HL_4WF9_007 HL_02862.2 | |
| HL_5T7V_035 | 1/B/249:255 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_5T7V_036 | 1/B/280:291 | No text annotation Not in a motif group | ||
| HL_5T7V_037 | 1/B/346:357 | No text annotation Not in a motif group | ||
| HL_5T7V_038 | 1/B/362:366 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_5T7V_039 | 1/B/370:378 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_5T7V_040 | 1/B/426:440 | No text annotation Not in a motif group | ||
| HL_5T7V_041 | 1/B/456:463 | No text annotation Not in a motif group | homologous HL_7A0S_014 HL_96598.1 | |
| HL_5T7V_042 | 1/B/508:513 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_5T7V_043 | 1/B/533:538 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
| HL_5T7V_044 | 1/B/586:595 | No text annotation Not in a motif group | ||
| HL_5T7V_045 | 1/B/607:620 | No text annotation Not in a motif group | ||
| HL_5T7V_046 | 1/B/655:661 | No text annotation Not in a motif group | geometric HL_2ZNI_001 HL_75407.1 | |
| HL_5T7V_047 | 1/B/674:679 | GNRA Not in a motif group | homologous HL_4WF9_020 HL_42097.1 | |
| HL_5T7V_048 | 1/B/686:692 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
| HL_5T7V_049 | 1/B/757:764 | No text annotation Not in a motif group | geometric HL_2ZNI_001 HL_75407.1 | |
| HL_5T7V_050 | 1/B/789:798 | No text annotation Not in a motif group | homologous HL_7A0S_022 HL_39334.6 | |
| HL_5T7V_051 | 1/B/824:830 | No text annotation Not in a motif group | homologous HL_4WF9_024 HL_74322.1 | |
| HL_5T7V_052 | 1/B/871:876 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_5T7V_053 | 1/B/999:1006 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_5T7V_054 | 1/B/1022:1029 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
| HL_5T7V_055 | 1/B/1136:1143 | No text annotation Not in a motif group | ||
| HL_5T7V_056 | 1/B/1213:1219 | No text annotation Not in a motif group | ||
| HL_5T7V_057 | 1/B/1260:1265 | No text annotation Not in a motif group | homologous HL_4WF9_031 HL_87030.2 | |
| HL_5T7V_058 | 1/B/1317:1327 | No text annotation Not in a motif group | geometric HL_4V7M_040 HL_22031.1 | |
| HL_5T7V_059 | 1/B/1361:1367 | No text annotation Not in a motif group | homologous HL_4WF9_033 HL_46680.1 | |
| HL_5T7V_060 | 1/B/1400:1405 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_5T7V_061 | 1/B/1426:1435 | No text annotation Not in a motif group | homologous HL_4WF9_035 HL_69023.2 | |
| HL_5T7V_063 | 1/B/1612:1615 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_5T7V_064 | 1/B/1656:1663 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.2 | |
| HL_5T7V_065 | 1/B/1673:1681 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
| HL_5T7V_066 | 1/B/1735:1740 | No text annotation Not in a motif group | geometric HL_7A0S_042 HL_03562.2 | |
| HL_5T7V_067 | 1/B/1761:1769 | No text annotation Not in a motif group | ||
| HL_5T7V_068 | 1/B/1779:1783 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_5T7V_069 | 1/B/1804:1814 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_5T7V_070 | 1/B/1833:1838 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_5T7V_071 | 1/B/1895:1900 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_5T7V_072 | 1/B/1937:1947 | No text annotation Not in a motif group | ||
| HL_5T7V_073 | 1/B/1976:1984 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_5T7V_074 | 1/B/2054:2063 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_5T7V_076 | 1/B/2236:2242 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_5T7V_077 | 1/B/2275:2283 | No text annotation Not in a motif group | homologous HL_5J7L_186 NA | |
| HL_5T7V_078 | 1/B/2291:2303 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_5T7V_079 | 1/B/2329:2341 | No text annotation Not in a motif group | ||
| HL_5T7V_080 | 1/B/2350:2359 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_5T7V_081 | 1/B/2382:2389 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_5T7V_082 | 1/B/2401:2406 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_5T7V_083 | 1/B/2431:2440 | No text annotation Not in a motif group | homologous HL_4WF9_055 HL_30784.2 | |
| HL_5T7V_084 | 1/B/2497:2507 | No text annotation Not in a motif group | ||
| HL_5T7V_085 | 1/B/2555:2562 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_5T7V_086 | 1/B/2578:2584 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_5T7V_087 | 1/B/2621:2626 | GNRA Not in a motif group | homologous HL_4WF9_059 HL_42097.1 | |
| HL_5T7V_088 | 1/B/2685:2690 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_5T7V_089 | 1/B/2728:2733 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_5T7V_090 | 1/B/2772:2786 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_5T7V_091 | 1/B/2838:2848 | No text annotation Not in a motif group | ||
| HL_5T7V_092 | 1/B/2876:2881 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 | |
| HL_5T7V_093 | 1/C/36:42 | No text annotation Not in a motif group | geometric HL_4V9F_071 HL_87939.1 | |
| HL_5T7V_094 | 1/C/77:94 | No text annotation Not in a motif group | ||
| HL_5T7V_095 | 1/D/13:22 | No text annotation Not in a motif group | ||
| HL_5T7V_096 | 1/D/28:42 | No text annotation Not in a motif group | ||
| HL_5T7V_097 | 1/D/52:62 | No text annotation Not in a motif group | homologous HL_4V7M_040 HL_22031.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5T7V_002 | No text annotation | ||
| HL_5T7V_022 | No text annotation | ||
| HL_5T7V_062 | No text annotation | ||
| HL_5T7V_075 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5T7V_001 | 1/A/31:33, 1/A/560:561 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.2 | |
| IL_5T7V_002 | 1/A/48:58, 1/A/363:369 | No text annotation Not in a motif group | ||
| IL_5T7V_004 | 1/A/207:211, 1/A/224:227 | No text annotation Not in a motif group | ||
| IL_5T7V_005 | 1/A/250:255, 1/A/285:292 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_5T7V_006 | 1/A/256:261, 1/A/281:284 | No text annotation Not in a motif group | ||
| IL_5T7V_007 | 1/A/299:302, 1/A/311:317 | No text annotation Not in a motif group | ||
| IL_5T7V_008 | 1/A/327:330, 1/A/340:342 | No text annotation Not in a motif group | ||
| IL_5T7V_009 | 1/A/383:386, 1/A/394:397 | No text annotation Not in a motif group | ||
| IL_5T7V_010 | 1/A/414:424, 1/A/435:444 | No text annotation Not in a motif group | ||
| IL_5T7V_011 | 1/A/512:519, 1/A/548:549 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_5T7V_012 | 1/A/519:530, 1/A/535:548 | No text annotation Not in a motif group | ||
| IL_5T7V_013 | 1/A/577:583, 1/A/889:890 | No text annotation Not in a motif group | homologous IL_6CZR_134 IL_69996.1 | |
| IL_5T7V_014 | 1/A/587:592, 1/A/765:770 | tSH-tHW-tHS-cWW Not in a motif group | geometric IL_3LQX_002 IL_76308.4 | |
| IL_5T7V_015 | 1/A/602:605, 1/A/651:653 | No text annotation Not in a motif group | homologous IL_6CZR_136 IL_05564.2 | |
| IL_5T7V_016 | 1/A/605:607, 1/A/647:651 | 8-nt loop receptor Not in a motif group | geometric IL_6CK5_002 IL_93341.1 | |
| IL_5T7V_017 | 1/A/612:621, 1/A/635:642 | No text annotation Not in a motif group | ||
| IL_5T7V_018 | 1/A/662:665, 1/A/757:762 | No text annotation Not in a motif group | ||
| IL_5T7V_019 | 1/A/665:667, 1/A/754:757 | No text annotation Not in a motif group | ||
| IL_5T7V_020 | 1/A/669:674, 1/A/748:752 | No text annotation Not in a motif group | ||
| IL_5T7V_021 | 1/A/681:686, 1/A/720:725 | No text annotation Not in a motif group | geometric IL_4LFB_030 IL_04668.1 | |
| IL_5T7V_022 | 1/A/692:697, 1/A/706:714 | No text annotation Not in a motif group | ||
| IL_5T7V_023 | 1/A/782:787, 1/A/811:813 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_5T7V_024 | 1/A/787:791, 1/A/807:811 | tSH-tHW-tHS Not in a motif group | geometric IL_4LFB_033 IL_17136.1 | |
| IL_5T7V_025 | 1/A/896:903, 1/A/914:919 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_5T7V_026 | 1/A/934:936, 1/A/1400:1401 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_5T7V_027 | 1/A/940:945, 1/A/1389:1396 | No text annotation Not in a motif group | ||
| IL_5T7V_028 | 1/A/945:948, 1/A/1354:1389 | No text annotation Not in a motif group | ||
| IL_5T7V_029 | 1/A/949:951, 1/A/1352:1353 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_5T7V_030 | 1/A/961:964, 1/A/1235:1239 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_002 IL_30621.2 | |
| IL_5T7V_031 | 1/A/1069:1074, 1/A/1203:1209 | No text annotation Not in a motif group | ||
| IL_5T7V_032 | 1/A/1251:1256, 1/A/1302:1306 | No text annotation Not in a motif group | ||
| IL_5T7V_033 | 1/A/1263:1268, 1/A/1287:1294 | No text annotation Not in a motif group | ||
| IL_5T7V_034 | 1/A/1414:1419, 1/A/1502:1508 | No text annotation Not in a motif group | ||
| IL_5T7V_035 | 1/A/1422:1424, 1/A/1497:1499 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_5T7V_036 | 1/A/1425:1430, 1/A/1491:1496 | No text annotation Not in a motif group | ||
| IL_5T7V_037 | 1/A/1433:1437, 1/A/1484:1488 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_5T7V_038 | 1/A/1440:1445, 1/A/1477:1481 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_5T7V_039 | 1/A/1445:1448, 1/A/1474:1477 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_002 IL_30621.2 | |
| IL_5T7V_040 | 1/A/1449:1454, 1/A/1469:1473 | No text annotation Not in a motif group | ||
| IL_5T7V_041 | 1/A/1455:1459, 1/A/1465:1468 | No text annotation Not in a motif group | ||
| IL_5T7V_042 | 1/B/24:30, 1/B/555:561 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_4WF9_001 IL_66414.6 | |
| IL_5T7V_043 | 1/B/36:37, 1/B/488:490 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
| IL_5T7V_044 | 1/B/42:44, 1/B/480:483 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4WF9_003 IL_65006.1 | |
| IL_5T7V_045 | 1/B/81:85, 1/B/97:104 | Kink-turn Not in a motif group | homologous IL_4WF9_004 IL_45067.2 | |
| IL_5T7V_046 | 1/B/152:154, 1/B/174:177 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_82068.2 | |
| IL_5T7V_047 | 1/B/186:187, 1/B/215:217 | Single stack bend Not in a motif group | homologous IL_7A0S_005 IL_76488.2 | |
| IL_5T7V_048 | 1/B/241:248, 1/B/256:262 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_009 IL_04346.7 | |
| IL_5T7V_049 | 1/B/304:307, 1/B/408:413 | No text annotation Not in a motif group | ||
| IL_5T7V_050 | 1/B/336:339, 1/B/385:390 | No text annotation Not in a motif group | ||
| IL_5T7V_051 | 1/B/527:530, 1/B/541:554 | No text annotation Not in a motif group | homologous IL_4WF9_015 IL_60992.6 | |
| IL_5T7V_052 | 1/B/581:584, 1/B/597:600 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.9 | |
| IL_5T7V_053 | 1/B/635:640, 1/B/705:710 | No text annotation Not in a motif group | geometric IL_6O5F_001 IL_04668.1 | |
| IL_5T7V_054 | 1/B/649:653, 1/B/663:667 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
| IL_5T7V_055 | 1/B/717:719, 1/B/851:853 | No text annotation Not in a motif group | homologous IL_7A0S_014 IL_95997.1 | |
| IL_5T7V_056 | 1/B/719:723, 1/B/844:851 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_4WF9_021 IL_17470.6 | |
| IL_5T7V_057 | 1/B/742:743, 1/B/808:810 | Single bulged A Not in a motif group | homologous IL_5J7L_261 IL_37497.2 | |
| IL_5T7V_058 | 1/B/747:752, 1/B/769:775 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_5T7V_059 | 1/B/783:785, 1/B/802:803 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.1 | |
| IL_5T7V_060 | 1/B/820:822, 1/B/832:836 | Multiple bulged bases Not in a motif group | geometric IL_4WF9_027 IL_90991.6 | |
| IL_5T7V_061 | 1/B/882:883, 1/B/984:986 | Single stack bend Not in a motif group | homologous IL_7A0S_022 IL_92001.1 | |
| IL_5T7V_062 | 1/B/886:893, 1/B/975:981 | No text annotation Not in a motif group | ||
| IL_5T7V_063 | 1/B/897:899, 1/B/968:971 | No text annotation Not in a motif group | homologous IL_7A0S_026 IL_51629.2 | |
| IL_5T7V_064 | 1/B/901:907, 1/B/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_4WF9_031 IL_93830.3 | |
| IL_5T7V_065 | 1/B/907:909, 1/B/957:960 | No text annotation Not in a motif group | ||
| IL_5T7V_066 | 1/B/909:913, 1/B/954:957 | C-loop Not in a motif group | geometric IL_4WF9_033 IL_02509.1 | |
| IL_5T7V_067 | 1/B/915:917, 1/B/950:952 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_034 IL_52767.2 | |
| IL_5T7V_068 | 1/B/1038:1040, 1/B/1203:1204 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_5T7V_069 | 1/B/1042:1046, 1/B/1197:1201 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
| IL_5T7V_070 | 1/B/1047:1059, 1/B/1191:1196 | No text annotation Not in a motif group | ||
| IL_5T7V_071 | 1/B/1062:1068, 1/B/1184:1188 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_5T7V_072 | 1/B/1068:1074, 1/B/1168:1184 | No text annotation Not in a motif group | geometric IL_4WF9_040 IL_50715.1 | |
| IL_5T7V_073 | 1/B/1074:1078, 1/B/1165:1168 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5J7L_033 IL_71110.1 | |
| IL_5T7V_074 | 1/B/1081:1084, 1/B/1159:1162 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1MFQ_004 IL_30621.2 | |
| IL_5T7V_075 | 1/B/1085:1096, 1/B/1151:1158 | No text annotation Not in a motif group | ||
| IL_5T7V_077 | 1/B/1235:1238, 1/B/1284:1288 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.2 | |
| IL_5T7V_078 | 1/B/1243:1245, 1/B/1277:1279 | Isolated cWH basepair Not in a motif group | homologous IL_4WF9_045 IL_51629.2 | |
| IL_5T7V_079 | 1/B/1246:1253, 1/B/1272:1276 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
| IL_5T7V_080 | 1/B/1257:1259, 1/B/1266:1268 | Intercalated cWW Not in a motif group | homologous IL_4WF9_047 IL_82842.2 | |
| IL_5T7V_081 | 1/B/1300:1307, 1/B/2038:2044 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_048 IL_04346.7 | |
| IL_5T7V_082 | 1/B/1356:1360, 1/B/1368:1370 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_4WF9_050 IL_37712.2 | |
| IL_5T7V_083 | 1/B/1388:1392, 1/B/1413:1417 | UAA/GAN Not in a motif group | homologous IL_7A0S_048 IL_89002.2 | |
| IL_5T7V_084 | 1/B/1393:1398, 1/B/1407:1412 | No text annotation Not in a motif group | ||
| IL_5T7V_085 | 1/B/1447:1452, 1/B/1631:1636 | No text annotation Not in a motif group | ||
| IL_5T7V_087 | 1/B/1461:1465, 1/B/1624:1627 | Other IL Not in a motif group | homologous IL_4WF9_054 IL_04059.1 | |
| IL_5T7V_088 | 1/B/1474:1480, 1/B/1604:1610 | No text annotation Not in a motif group | ||
| IL_5T7V_089 | 1/B/1480:1485, 1/B/1598:1604 | No text annotation Not in a motif group | ||
| IL_5T7V_090 | 1/B/1485:1510, 1/B/1571:1598 | No text annotation Not in a motif group | ||
| IL_5T7V_091 | 1/B/1511:1516, 1/B/1564:1570 | No text annotation Not in a motif group | homologous IL_4WF9_058 IL_88190.1 | |
| IL_5T7V_092 | 1/B/1516:1523, 1/B/1557:1564 | No text annotation Not in a motif group | ||
| IL_5T7V_094 | 1/B/1695:1700, 1/B/2031:2033 | No text annotation Not in a motif group | homologous IL_4WF9_062 IL_12566.2 | |
| IL_5T7V_095 | 1/B/1707:1709, 1/B/2022:2024 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.7 | |
| IL_5T7V_096 | 1/B/1710:1713, 1/B/2020:2021 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_064 IL_50694.2 | |
| IL_5T7V_097 | 1/B/1713:1718, 1/B/2017:2020 | Intercalated tWH Not in a motif group | geometric IL_4WF9_065 IL_82842.2 | |
| IL_5T7V_098 | 1/B/1730:1735, 1/B/1740:1746 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_5T7V_099 | 1/B/1754:1756, 1/B/1774:1775 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_5T7V_100 | 1/B/1756:1761, 1/B/1769:1774 | No text annotation Not in a motif group | ||
| IL_5T7V_101 | 1/B/1797:1798, 1/B/2007:2009 | Single bulged A Not in a motif group | homologous IL_4WF9_068 IL_37497.2 | |
| IL_5T7V_102 | 1/B/1825:1831, 1/B/1840:1848 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_5T7V_103 | 1/B/1863:1867, 1/B/1929:1931 | No text annotation Not in a motif group | ||
| IL_5T7V_104 | 1/B/1868:1869, 1/B/1925:1928 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7A0S_067 IL_16396.2 | |
| IL_5T7V_105 | 1/B/1873:1876, 1/B/1920:1921 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
| IL_5T7V_106 | 1/B/1877:1882, 1/B/1914:1919 | No text annotation Not in a motif group | ||
| IL_5T7V_107 | 1/B/1883:1887, 1/B/1909:1913 | Triple sheared Not in a motif group | homologous IL_4WF9_074 IL_96141.1 | |
| IL_5T7V_108 | 1/B/1890:1895, 1/B/1900:1906 | No text annotation Not in a motif group | ||
| IL_5T7V_109 | 1/B/1960:1961, 1/B/1991:1994 | No text annotation Not in a motif group | geometric IL_4WF9_076 IL_59677.2 | |
| IL_5T7V_110 | 1/B/1961:1972, 1/B/1988:1991 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
| IL_5T7V_111 | 1/B/2077:2079, 1/B/2644:2645 | Major groove platform Not in a motif group | homologous IL_4WF9_078 IL_27635.1 | |
| IL_5T7V_112 | 1/B/2081:2083, 1/B/2639:2642 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.5 | |
| IL_5T7V_113 | 1/B/2094:2096, 1/B/2469:2470 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_5T7V_114 | 1/B/2097:2098, 1/B/2465:2468 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_5T7V_115 | 1/B/2108:2110, 1/B/2263:2266 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4WF9_082 IL_38958.7 | |
| IL_5T7V_116 | 1/B/2121:2126, 1/B/2217:2222 | No text annotation Not in a motif group | geometric IL_6O5F_001 IL_04668.1 | |
| IL_5T7V_117 | 1/B/2229:2231, 1/B/2247:2248 | Single bulged G Not in a motif group | geometric IL_3NDB_004 IL_00225.2 | |
| IL_5T7V_118 | 1/B/2324:2326, 1/B/2344:2348 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4WF9_086 IL_38958.7 | |
| IL_5T7V_119 | 1/B/2377:2380, 1/B/2391:2394 | Double sheared Not in a motif group | homologous IL_4WF9_087 IL_09705.9 | |
| IL_5T7V_120 | 1/B/2428:2430, 1/B/2441:2442 | Single bulged U Not in a motif group | homologous IL_4WF9_088 IL_83039.13 | |
| IL_5T7V_121 | 1/B/2480:2481, 1/B/2525:2527 | Single stack bend Not in a motif group | homologous IL_4WF9_089 IL_76488.2 | |
| IL_5T7V_122 | 1/B/2481:2482, 1/B/2523:2525 | Major groove platform Not in a motif group | geometric IL_4WF9_090 IL_27635.1 | |
| IL_5T7V_123 | 1/B/2483:2488, 1/B/2516:2522 | No text annotation Not in a motif group | ||
| IL_5T7V_124 | 1/B/2493:2497, 1/B/2507:2511 | Triple sheared Not in a motif group | geometric IL_4WF9_093 IL_56467.8 | |
| IL_5T7V_125 | 1/B/2534:2535, 1/B/2607:2609 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_5T7V_126 | 1/B/2537:2539, 1/B/2601:2605 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 IL_90933.2 | |
| IL_5T7V_127 | 1/B/2539:2540, 1/B/2598:2601 | No text annotation Not in a motif group | geometric IL_4WF9_096 IL_71530.2 | |
| IL_5T7V_128 | 1/B/2549:2550, 1/B/2567:2570 | Minor groove platform with intercalation Not in a motif group | homologous IL_4WF9_097 IL_95601.3 | |
| IL_5T7V_129 | 1/B/2662:2667, 1/B/2801:2810 | No text annotation Not in a motif group | ||
| IL_5T7V_130 | 1/B/2678:2685, 1/B/2690:2696 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_289 IL_04346.7 | |
| IL_5T7V_131 | 1/B/2707:2713, 1/B/2750:2754 | No text annotation Not in a motif group | ||
| IL_5T7V_132 | 1/B/2714:2718, 1/B/2745:2749 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
| IL_5T7V_133 | 1/B/2722:2725, 1/B/2736:2741 | No text annotation Not in a motif group | ||
| IL_5T7V_134 | 1/B/2764:2770, 1/B/2788:2794 | No text annotation Not in a motif group | ||
| IL_5T7V_135 | 1/B/2816:2831, 1/B/2909:2913 | No text annotation Not in a motif group | ||
| IL_5T7V_136 | 1/B/2858:2861, 1/B/2896:2900 | No text annotation Not in a motif group | ||
| IL_5T7V_137 | 1/B/2863:2865, 1/B/2891:2894 | No text annotation Not in a motif group | homologous IL_4WF9_107 IL_02284.5 | |
| IL_5T7V_138 | 1/B/2867:2873, 1/B/2884:2889 | No text annotation Not in a motif group | ||
| IL_5T7V_139 | 1/C/14:17, 1/C/63:66 | No text annotation Not in a motif group | ||
| IL_5T7V_140 | 1/C/17:19, 1/C/60:63 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_5T7V_141 | 1/C/20:27, 1/C/53:59 | No text annotation Not in a motif group | homologous IL_4WF9_113 IL_19048.1 | |
| IL_5T7V_142 | 1/C/28:36, 1/C/42:52 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5T7V_003 | No text annotation | ||
| IL_5T7V_076 | No text annotation | ||
| IL_5T7V_086 | No text annotation | ||
| IL_5T7V_093 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5T7V_002 | 1/A/594:599, 1/A/656:662, 1/A/762:763 | No text annotation Not in a motif group | ||
| J3_5T7V_003 | 1/A/680:681, 1/A/725:733, 1/A/740:742 | No text annotation Not in a motif group | homologous J3_5J7L_003 NA | |
| J3_5T7V_004 | 1/A/834:837, 1/A/866:870, 1/A/877:883 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_5T7V_005 | 1/A/964:971, 1/A/982:993, 1/A/1231:1235 | No text annotation Not in a motif group | ||
| J3_5T7V_006 | 1/A/1083:1085, 1/A/1094:1098, 1/A/1109:1114 | No text annotation Not in a motif group | ||
| J3_5T7V_007 | 1/B/30:31, 1/B/520:527, 1/B/554:555 | No text annotation Not in a motif group | ||
| J3_5T7V_008 | 1/B/55:57, 1/B/70:76, 1/B/109:114 | No text annotation Not in a motif group | ||
| J3_5T7V_009 | 1/B/300:302, 1/B/415:421, 1/B/445:450 | No text annotation Not in a motif group | ||
| J3_5T7V_010 | 1/B/727:734, 1/B/818:820, 1/B/836:840 | No text annotation Not in a motif group | ||
| J3_5T7V_011 | 1/B/743:745, 1/B/777:781, 1/B/805:808 | No text annotation Not in a motif group | ||
| J3_5T7V_012 | 1/B/1335:1340, 1/B/1669:1671, 1/B/1683:1686 | No text annotation Not in a motif group | homologous J3_4WF9_004 NA | |
| J3_5T7V_013 | 1/B/1342:1346, 1/B/1649:1655, 1/B/1664:1667 | No text annotation Not in a motif group | homologous J3_4WF9_005 NA | |
| J3_5T7V_014 | 1/B/2117:2120, 1/B/2223:2228, 1/B/2249:2256 | No text annotation Not in a motif group | ||
| J3_5T7V_015 | 1/B/2322:2324, 1/B/2348:2350, 1/B/2359:2364 | No text annotation Not in a motif group | ||
| J3_5T7V_016 | 1/B/2544:2547, 1/B/2572:2574, 1/B/2588:2594 | No text annotation Not in a motif group | ||
| J3_5T7V_017 | 1/B/2833:2835, 1/B/2851:2856, 1/B/2902:2907 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5T7V_001 | No text annotation |
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