Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5T7V_0011/A/13:23No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_5T7V_0031/A/158:163GNRA
homologous
HL_4LFB_003
HL_37824.7
HL_5T7V_0041/A/267:275GNRA related
homologous
HL_5J7L_006
HL_84299.4
HL_5T7V_0051/A/304:309GNRA
homologous
HL_4LFB_007
HL_37824.7
HL_5T7V_1201/A/328:341No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_5T7V_0061/A/330:340No text annotation
HL_5T7V_0991/A/347:358No text annotation
HL_5T7V_0071/A/350:355UNCG
homologous
HL_6CZR_080
NA
HL_5T7V_1001/A/383:397No text annotation
HL_5T7V_0081/A/386:394No text annotation
geometric
HL_8C3A_039
NA
HL_5T7V_1211/A/426:433No text annotation
HL_5T7V_0101/A/452:498No text annotation
HL_5T7V_1221/A/521:546No text annotation
HL_5T7V_0111/A/530:535No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_5T7V_0121/A/623:633No text annotation
HL_5T7V_0131/A/697:706No text annotation
geometric
HL_6CZR_086
NA
HL_5T7V_0141/A/734:739GNRA
homologous
HL_4LFB_016
HL_37824.7
HL_5T7V_0151/A/794:804No text annotation
homologous
HL_4LFB_017
HL_75293.5
HL_5T7V_1231/A/846:857No text annotation
HL_5T7V_0171/A/871:876GNRA
homologous
HL_4LFB_019
HL_37824.7
HL_5T7V_0181/A/906:911GNRA
homologous
HL_4LFB_020
HL_37824.7
HL_5T7V_0191/A/972:981No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_5T7V_0201/A/1087:1092GNRA
homologous
HL_4LFB_024
HL_37824.7
HL_5T7V_0211/A/1100:1107T-loop related
homologous
HL_5J7L_024
HL_77436.5
HL_5T7V_0231/A/1172:1184No text annotation
HL_5T7V_0241/A/1269:1286No text annotation
HL_5T7V_0251/A/1324:1333T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_5T7V_1241/A/1361:1381No text annotation
HL_5T7V_1251/A/1450:1472No text annotation
HL_5T7V_0261/A/1459:1465No text annotation
geometric
HL_6VMY_004
HL_53890.2
HL_5T7V_0271/A/1526:1531GNRA
homologous
HL_6CZR_103
NA
HL_5T7V_1261/B/59:68Pseudoknot with intercalation
homologous
HL_4WF9_067
HL_93438.2
HL_5T7V_1271/B/81:104No text annotation
HL_5T7V_0291/B/87:95No text annotation
geometric
HL_4LX6_002
HL_31585.3
HL_5T7V_0301/B/122:127No text annotation
homologous
HL_4WF9_003
HL_75660.5
HL_5T7V_0311/B/136:143GNRA wlth tandem sheared
homologous
HL_4WF9_004
HL_81538.2
HL_5T7V_0321/B/158:170No text annotation
geometric
HL_2ZNI_001
HL_75660.5
HL_5T7V_0331/B/190:212No text annotation
HL_5T7V_0341/B/228:233No text annotation
homologous
HL_4WF9_007
HL_53890.2
HL_5T7V_0351/B/249:255No text annotation
homologous
HL_7RQB_008
NA
HL_5T7V_0361/B/280:291No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_5T7V_0371/B/346:357No text annotation
HL_5T7V_0381/B/362:366No text annotation
homologous
HL_5J7L_143
HL_75660.5
HL_5T7V_0391/B/370:378T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_5T7V_1281/B/427:439No text annotation
homologous
HL_4WF9_013
HL_69139.1
HL_5T7V_0411/B/456:463Pseudoknot geometry
homologous
HL_7A0S_014
HL_30680.3
HL_5T7V_0421/B/508:513GNRA
homologous
HL_4WF9_015
HL_37824.7
HL_5T7V_0431/B/533:538GNRA
homologous
HL_4WF9_016
HL_37824.7
HL_5T7V_1291/B/587:594No text annotation
homologous
HL_4WF9_017
HL_50318.1
HL_5T7V_0451/B/607:620No text annotation
HL_5T7V_0461/B/655:661No text annotation
geometric
HL_2ZNI_001
HL_75660.5
HL_5T7V_0471/B/674:679GNRA
homologous
HL_4WF9_020
HL_37824.7
HL_5T7V_0481/B/686:692GNRA
homologous
HL_4WF9_021
HL_37824.7
HL_5T7V_0491/B/757:764No text annotation
geometric
HL_2ZNI_001
HL_75660.5
HL_5T7V_0501/B/789:798No text annotation
homologous
HL_7A0S_022
HL_88205.2
HL_5T7V_0511/B/824:830No text annotation
homologous
HL_4WF9_024
HL_87954.2
HL_5T7V_0521/B/871:876No text annotation
homologous
HL_7RQB_025
NA
HL_5T7V_0531/B/999:1006GNRA
homologous
HL_4WF9_027
HL_37824.7
HL_5T7V_0541/B/1022:1029No text annotation
homologous
HL_5J7L_160
HL_42998.2
HL_5T7V_0551/B/1136:1143No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_5T7V_0561/B/1213:1219No text annotation
HL_5T7V_0571/B/1260:1265GNRA
homologous
HL_4WF9_031
HL_37824.7
HL_5T7V_1301/B/1318:1326T-loop with 2 stacked bulged bases
homologous
HL_4WF9_032
HL_28252.6
HL_5T7V_1131/B/1356:1370No text annotation
HL_5T7V_0591/B/1361:1367Pseudoknot geometry with 3' bulge
homologous
HL_4WF9_033
HL_57176.2
HL_5T7V_0601/B/1400:1405GNRA
homologous
HL_5J7L_167
HL_37824.7
HL_5T7V_0611/B/1426:1435No text annotation
homologous
HL_4WF9_035
HL_81545.2
HL_5T7V_0631/B/1612:1615Mini UNCG
homologous
HL_7A0S_039
HL_48778.2
HL_5T7V_0641/B/1656:1663No text annotation
homologous
HL_4WF9_038
HL_89567.2
HL_5T7V_0651/B/1673:1681GNRA with extra cWW
homologous
HL_4WF9_039
HL_20167.2
HL_5T7V_0661/B/1735:1740UNCG
geometric
HL_7A0S_042
HL_34617.5
HL_5T7V_0671/B/1761:1769No text annotation
HL_5T7V_0681/B/1779:1783No text annotation
homologous
HL_7RQB_044
NA
HL_5T7V_0691/B/1804:1814No text annotation
homologous
HL_4WF9_043
HL_01962.2
HL_5T7V_0701/B/1833:1838GNRA related
homologous
HL_5J7L_179
HL_04783.2
HL_5T7V_0711/B/1895:1900No text annotation
geometric
HL_5TBW_006
NA
HL_5T7V_0721/B/1937:1947No text annotation
homologous
HL_9DFE_046
HL_25847.2
HL_5T7V_0731/B/1976:1984No text annotation
homologous
HL_5J7L_182
HL_20167.2
HL_5T7V_0741/B/2054:2063No text annotation
homologous
HL_4WF9_047
HL_61996.2
HL_5T7V_0761/B/2236:2242No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_5T7V_0771/B/2275:2283No text annotation
homologous
HL_5J7L_186
HL_85367.2
HL_5T7V_0781/B/2291:2303No text annotation
homologous
HL_4WF9_050
HL_91939.2
HL_5T7V_0791/B/2329:2341No text annotation
geometric
HL_8C3A_054
NA
HL_5T7V_1161/B/2351:2358Pseudoknot geometry
homologous
HL_4WF9_052
HL_93324.4
HL_5T7V_0811/B/2382:2389GNRA with extra cWW
homologous
HL_4WF9_053
HL_04259.3
HL_5T7V_0821/B/2401:2406GNRA
homologous
HL_4WF9_054
HL_37824.7
HL_5T7V_0831/B/2431:2440No text annotation
homologous
HL_4WF9_055
HL_53454.2
HL_5T7V_1311/B/2498:2506No text annotation
homologous
HL_4WF9_056
HL_32735.2
HL_5T7V_0851/B/2555:2562No text annotation
homologous
HL_5J7L_194
HL_31585.3
HL_5T7V_0861/B/2578:2584No text annotation
homologous
HL_4WF9_058
HL_30068.2
HL_5T7V_0871/B/2621:2626GNRA
homologous
HL_4WF9_059
HL_37824.7
HL_5T7V_0881/B/2685:2690GNRA
homologous
HL_5J7L_197
HL_37824.7
HL_5T7V_0891/B/2728:2733Ribsomal LSU H95
homologous
HL_5J7L_198
HL_65794.5
HL_5T7V_0901/B/2772:2786No text annotation
homologous
HL_5J7L_199
HL_74055.2
HL_5T7V_1321/B/2839:2847No text annotation
homologous
HL_4WF9_064
HL_64690.6
HL_5T7V_0921/B/2876:2881GNRA
homologous
HL_7A0S_068
HL_37824.7
HL_5T7V_1331/C/31:47No text annotation
HL_5T7V_0931/C/36:42No text annotation
geometric
HL_4V9F_071
HL_47787.2
HL_5T7V_0941/C/77:94No text annotation
HL_5T7V_0951/D/13:22No text annotation
HL_5T7V_0961/D/28:42No text annotation
HL_5T7V_0971/D/52:62No text annotation
homologous
HL_4V7M_040
HL_67079.1

Problematic loops

#loop idProblemSequence
HL_5T7V_002No text annotation
HL_5T7V_098No text annotation
HL_5T7V_009No text annotation
HL_5T7V_101No text annotation
HL_5T7V_016No text annotation
HL_5T7V_102No text annotation
HL_5T7V_022No text annotation
HL_5T7V_103No text annotation
HL_5T7V_028No text annotation
HL_5T7V_104No text annotation
HL_5T7V_105No text annotation
HL_5T7V_106No text annotation
HL_5T7V_107No text annotation
HL_5T7V_108No text annotation
HL_5T7V_109No text annotation
HL_5T7V_110No text annotation
HL_5T7V_040No text annotation
HL_5T7V_044No text annotation
HL_5T7V_111Other HL
HL_5T7V_112No text annotation
HL_5T7V_058No text annotation
HL_5T7V_062No text annotation
HL_5T7V_114No text annotation
HL_5T7V_075No text annotation
HL_5T7V_115No text annotation
HL_5T7V_080No text annotation
HL_5T7V_084No text annotation
HL_5T7V_117tRNA anticodon loop
HL_5T7V_091No text annotation
HL_5T7V_118GNRA with near cWW
HL_5T7V_119No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5T7V_0011/A/31:33,
1/A/560:561
Single bulged G
homologous
IL_6CZR_113
NA
IL_5T7V_0021/A/48:58,
1/A/363:369
No text annotation
IL_5T7V_2001/A/147:154,
1/A/167:175
No text annotation
IL_5T7V_0041/A/207:211,
1/A/224:227
No text annotation
IL_5T7V_0051/A/250:255,
1/A/285:292
Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
IL_46174.3
IL_5T7V_2011/A/256:260,
1/A/282:284
No text annotation
IL_5T7V_2021/A/300:301,
1/A/312:316
C-loop
homologous
IL_5J7L_016
IL_03109.3
IL_5T7V_0081/A/327:330,
1/A/340:342
No text annotation
IL_5T7V_0091/A/383:386,
1/A/394:397
No text annotation
geometric
IL_4V87_185
NA
IL_5T7V_0101/A/414:424,
1/A/435:444
No text annotation
IL_5T7V_0111/A/512:519,
1/A/548:549
SSU/LSU pseudoknot
homologous
IL_5J7L_024
IL_41203.4
IL_5T7V_0121/A/519:530,
1/A/535:548
No text annotation
IL_5T7V_0131/A/577:583,
1/A/889:890
No text annotation
homologous
IL_6CZR_134
NA
IL_5T7V_1461/A/588:592,
1/A/765:769
tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_5T7V_0151/A/602:605,
1/A/651:653
No text annotation
homologous
IL_6CZR_136
NA
IL_5T7V_1471/A/602:621,
1/A/635:653
No text annotation
IL_5T7V_0161/A/605:607,
1/A/647:651
8-nt loop receptor
geometric
IL_6CK5_002
IL_36516.3
IL_5T7V_0171/A/612:621,
1/A/635:642
No text annotation
IL_5T7V_0181/A/662:665,
1/A/757:762
No text annotation
IL_5T7V_2031/A/662:666,
1/A/755:762
No text annotation
IL_5T7V_0191/A/665:667,
1/A/754:757
No text annotation
IL_5T7V_0201/A/669:674,
1/A/748:752
No text annotation
IL_5T7V_0211/A/681:686,
1/A/720:725
No text annotation
geometric
IL_4LFB_030
NA
IL_5T7V_1491/A/692:696,
1/A/707:714
Kink-turn
homologous
IL_5J7L_035
IL_01488.3
IL_5T7V_0231/A/782:787,
1/A/811:813
Other IL
geometric
IL_4V88_435
NA
IL_5T7V_1501/A/782:791,
1/A/807:813
No text annotation
IL_5T7V_0241/A/787:791,
1/A/807:811
tSH-tHW-tHS
geometric
IL_4LFB_033
IL_17136.7
IL_5T7V_0251/A/896:903,
1/A/914:919
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_41756.4
IL_5T7V_2041/A/930:932,
1/A/1403:1406
No text annotation
IL_5T7V_0261/A/934:936,
1/A/1400:1401
Single bulged G
homologous
IL_5J7L_040
IL_00225.13
IL_5T7V_0271/A/940:945,
1/A/1389:1396
No text annotation
IL_5T7V_1511/A/940:949,
1/A/1353:1396
No text annotation
IL_5T7V_0281/A/945:948,
1/A/1354:1389
No text annotation
IL_5T7V_0291/A/949:951,
1/A/1352:1353
Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_5T7V_0301/A/961:964,
1/A/1235:1239
Tandem non-canonical cWW pairs
geometric
IL_6JDV_002
IL_85033.2
IL_5T7V_0311/A/1069:1074,
1/A/1203:1209
No text annotation
IL_5T7V_2051/A/1084:1098,
1/A/1109:1113
No text annotation
IL_5T7V_1531/A/1127:1130,
1/A/1164:1194
No text annotation
IL_5T7V_0321/A/1251:1256,
1/A/1302:1306
No text annotation
IL_5T7V_1541/A/1251:1263,
1/A/1294:1306
No text annotation
IL_5T7V_0331/A/1263:1268,
1/A/1287:1294
No text annotation
IL_5T7V_1561/A/1313:1323,
1/A/1334:1344
No text annotation
IL_5T7V_0341/A/1414:1419,
1/A/1502:1508
No text annotation
homologous
IL_6CZR_369
NA
IL_5T7V_0351/A/1422:1424,
1/A/1497:1499
Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_5T7V_2061/A/1426:1429,
1/A/1492:1495
Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_5T7V_2071/A/1434:1437,
1/A/1484:1487
No text annotation
geometric
IL_8P9A_327
IL_85033.2
IL_5T7V_0381/A/1440:1445,
1/A/1477:1481
Triple sheared related
geometric
IL_4V9F_018
IL_97631.1
IL_5T7V_2081/A/1440:1448,
1/A/1474:1481
No text annotation
IL_5T7V_0391/A/1445:1448,
1/A/1474:1477
Tandem non-canonical cWW pairs
geometric
IL_6JDV_002
IL_85033.2
IL_5T7V_0401/A/1449:1454,
1/A/1469:1473
No text annotation
IL_5T7V_0411/A/1455:1459,
1/A/1465:1468
No text annotation
IL_5T7V_0421/B/24:30,
1/B/555:561
Triple sheared with non-canonical cWW
geometric
IL_4WF9_001
IL_04021.2
IL_5T7V_0431/B/36:37,
1/B/488:490
Single bulged A
homologous
IL_7A0S_002
IL_31462.5
IL_5T7V_0441/B/42:44,
1/B/480:483
Minor groove platform with extra cWW
homologous
IL_4WF9_003
IL_90351.1
IL_5T7V_0451/B/81:85,
1/B/97:104
Kink-turn
homologous
IL_4WF9_004
IL_01488.3
IL_5T7V_0461/B/152:154,
1/B/174:177
Isolated non-canonical cWW with bulges
geometric
IL_4V9F_097
IL_07785.1
IL_5T7V_0471/B/186:187,
1/B/215:217
Single stack bend
homologous
IL_7A0S_005
IL_90729.1
IL_5T7V_0481/B/241:248,
1/B/256:262
8x7 Sarcin-Ricin; G-bulge
homologous
IL_4WF9_009
IL_04346.10
IL_5T7V_2091/B/305:306,
1/B/409:412
Major groove minor groove platform; mini C-loop
geometric
IL_5J7L_316
IL_68140.4
IL_5T7V_0501/B/336:339,
1/B/385:390
No text annotation
IL_5T7V_0511/B/527:530,
1/B/541:554
No text annotation
homologous
IL_4WF9_015
IL_81516.2
IL_5T7V_0521/B/581:584,
1/B/597:600
Double sheared
homologous
IL_4WF9_016
IL_09705.15
IL_5T7V_2101/B/638:640,
1/B/705:707
Isolated non-canonical cWW pair
homologous
IL_4WF9_018
IL_07785.1
IL_5T7V_0541/B/649:653,
1/B/663:667
AAA cross-strand stack
homologous
IL_4WF9_019
IL_66798.2
IL_5T7V_0551/B/717:719,
1/B/851:853
Isolated non-canonical cWW pair
homologous
IL_7A0S_014
IL_87907.2
IL_5T7V_0561/B/719:723,
1/B/844:851
tHW-tHW cross-strand stack
geometric
IL_4WF9_021
IL_54041.2
IL_5T7V_0571/B/742:743,
1/B/808:810
Single bulged A
homologous
IL_5J7L_261
IL_31462.5
IL_5T7V_0581/B/747:752,
1/B/769:775
No text annotation
geometric
IL_4LFB_055
IL_85536.2
IL_5T7V_0591/B/783:785,
1/B/802:803
Major groove platform
homologous
IL_4WF9_026
IL_48076.6
IL_5T7V_0601/B/820:822,
1/B/832:836
Multiple bulged bases
geometric
IL_4WF9_027
IL_06549.2
IL_5T7V_0611/B/882:883,
1/B/984:986
Single stack bend
homologous
IL_7A0S_022
IL_90729.1
IL_5T7V_1671/B/882:884,
1/B/983:986
No text annotation
geometric
IL_4V87_185
NA
IL_5T7V_2111/B/889:893,
1/B/975:978
No text annotation
homologous
IL_4WF9_029
IL_06300.1
IL_5T7V_2121/B/897:898,
1/B/969:971
Single bulged U
geometric
IL_8P9A_241
IL_89505.4
IL_5T7V_0641/B/901:907,
1/B/960:966
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_4WF9_031
IL_29198.2
IL_5T7V_2131/B/901:908,
1/B/958:966
No text annotation
IL_5T7V_0651/B/907:909,
1/B/957:960
Isolated non-canonical cWW with bulges
geometric
IL_4V9F_097
IL_07785.1
IL_5T7V_0661/B/909:913,
1/B/954:957
C-loop
geometric
IL_4WF9_033
IL_26222.2
IL_5T7V_0681/B/1038:1040,
1/B/1203:1204
Single bulged C
homologous
IL_5J7L_276
IL_61258.15
IL_5T7V_0691/B/1042:1046,
1/B/1197:1201
UAA/GAN
homologous
IL_4WF9_036
IL_38507.2
IL_5T7V_2141/B/1048:1057,
1/B/1193:1195
No text annotation
IL_5T7V_0711/B/1062:1068,
1/B/1184:1188
Kink-turn related
geometric
IL_4WF9_039
IL_57188.5
IL_5T7V_0721/B/1068:1074,
1/B/1168:1184
No text annotation
geometric
IL_4WF9_040
IL_50715.3
IL_5T7V_2151/B/1075:1078,
1/B/1165:1167
Isolated non-canonical cWW pair
homologous
IL_5J7L_282
IL_57744.1
IL_5T7V_1711/B/1081:1083,
1/B/1160:1162
Isolated non-canonical cWW pair
homologous
IL_4WF9_042
IL_87907.2
IL_5T7V_2161/B/1086:1096,
1/B/1151:1157
No text annotation
IL_5T7V_2171/B/1235:1237,
1/B/1285:1288
Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.3
IL_5T7V_0781/B/1243:1245,
1/B/1277:1279
Isolated cWH basepair
homologous
IL_4WF9_045
IL_10167.5
IL_5T7V_0791/B/1246:1253,
1/B/1272:1276
Kink-turn
homologous
IL_5J7L_288
IL_70923.9
IL_5T7V_0801/B/1257:1259,
1/B/1266:1268
Intercalated cWW
homologous
IL_4WF9_047
IL_31737.3
IL_5T7V_0811/B/1300:1307,
1/B/2038:2044
8x7 Sarcin-Ricin; G-bulge
homologous
IL_4WF9_048
IL_04346.10
IL_5T7V_0821/B/1356:1360,
1/B/1368:1370
Major groove minor groove platform with tHH
homologous
IL_4WF9_050
IL_83150.2
IL_5T7V_0831/B/1388:1392,
1/B/1413:1417
UAA/GAN
homologous
IL_7A0S_048
IL_89021.2
IL_5T7V_2181/B/1394:1398,
1/B/1407:1411
tSH-tHW-tHS
homologous
IL_4WF9_052
IL_17136.7
IL_5T7V_0851/B/1447:1452,
1/B/1631:1636
No text annotation
IL_5T7V_0871/B/1461:1465,
1/B/1624:1627
Other IL
homologous
IL_4WF9_054
IL_99646.2
IL_5T7V_0881/B/1474:1480,
1/B/1604:1610
No text annotation
IL_5T7V_0891/B/1480:1485,
1/B/1598:1604
No text annotation
IL_5T7V_2191/B/1481:1510,
1/B/1571:1603
No text annotation
IL_5T7V_0901/B/1485:1510,
1/B/1571:1598
No text annotation
IL_5T7V_1781/B/1511:1515,
1/B/1565:1570
No text annotation
homologous
IL_4WF9_116
IL_25186.4
IL_5T7V_2201/B/1518:1523,
1/B/1557:1562
Double sheared; A in syn; two near cWW pairs
geometric
IL_4N0T_001
IL_71294.3
IL_5T7V_1791/B/1523:1525,
1/B/1556:1557
No text annotation
IL_5T7V_0941/B/1695:1700,
1/B/2031:2033
No text annotation
homologous
IL_4WF9_062
IL_12566.4
IL_5T7V_0951/B/1707:1709,
1/B/2022:2024
Isolated tWW turn
homologous
IL_5J7L_305
IL_67095.2
IL_5T7V_0961/B/1710:1713,
1/B/2020:2021
Major groove platform; stack outside cWW
homologous
IL_4WF9_064
IL_50694.7
IL_5T7V_1811/B/1710:1718,
1/B/2017:2021
No text annotation
homologous
IL_4WF9_117
IL_22854.4
IL_5T7V_0971/B/1713:1718,
1/B/2017:2020
Intercalated tWH
geometric
IL_4WF9_065
IL_76758.2
IL_5T7V_0981/B/1730:1735,
1/B/1740:1746
tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA
IL_5T7V_0991/B/1754:1756,
1/B/1774:1775
Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_5T7V_1001/B/1756:1761,
1/B/1769:1774
No text annotation
IL_5T7V_1011/B/1797:1798,
1/B/2007:2009
Single bulged A
homologous
IL_4WF9_068
IL_31462.5
IL_5T7V_1021/B/1825:1831,
1/B/1840:1848
Kink-turn related
homologous
IL_7RQB_070
NA
IL_5T7V_1031/B/1863:1867,
1/B/1929:1931
No text annotation
IL_5T7V_1041/B/1868:1869,
1/B/1925:1928
Major groove intercalation
homologous
IL_7A0S_067
IL_66635.5
IL_5T7V_1051/B/1873:1876,
1/B/1920:1921
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
IL_68140.4
IL_5T7V_1861/B/1878:1882,
1/B/1914:1918
UAA/GAN with extra pair
homologous
IL_4WF9_073
IL_89021.2
IL_5T7V_1071/B/1883:1887,
1/B/1909:1913
Triple sheared
homologous
IL_4WF9_074
IL_66798.2
IL_5T7V_1871/B/1891:1894,
1/B/1901:1905
UAA/GAN
homologous
IL_4WF9_075
IL_77691.5
IL_5T7V_1091/B/1960:1961,
1/B/1991:1994
Bulged stacked bases
geometric
IL_4WF9_076
IL_22551.3
IL_5T7V_1101/B/1961:1972,
1/B/1988:1991
No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_5T7V_1111/B/2077:2079,
1/B/2644:2645
Major groove platform
homologous
IL_4WF9_078
IL_48076.6
IL_5T7V_1121/B/2081:2083,
1/B/2639:2642
No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_5T7V_1131/B/2094:2096,
1/B/2469:2470
Single bulged U
homologous
IL_7RQB_080
NA
IL_5T7V_1141/B/2097:2098,
1/B/2465:2468
Minor groove platform
homologous
IL_7RQB_081
NA
IL_5T7V_1151/B/2108:2110,
1/B/2263:2266
Isolated tHS basepair with bulges
homologous
IL_4WF9_082
IL_85599.2
IL_5T7V_1161/B/2121:2126,
1/B/2217:2222
No text annotation
geometric
IL_6O5F_001
NA
IL_5T7V_1171/B/2229:2231,
1/B/2247:2248
Single bulged G
geometric
IL_3NDB_004
IL_00225.13
IL_5T7V_1891/B/2319:2320,
1/B/2366:2368
Single stack bend
geometric
IL_5J7L_269
IL_26793.1
IL_5T7V_1181/B/2324:2326,
1/B/2344:2348
Isolated tHS basepair with bulges
homologous
IL_4WF9_086
IL_61476.2
IL_5T7V_1191/B/2377:2380,
1/B/2391:2394
Double sheared
homologous
IL_4WF9_087
IL_09705.15
IL_5T7V_1201/B/2428:2430,
1/B/2441:2442
Single bulged U
homologous
IL_4WF9_088
IL_89505.4
IL_5T7V_1211/B/2480:2481,
1/B/2525:2527
Single stack bend
homologous
IL_4WF9_089
IL_26793.1
IL_5T7V_1221/B/2481:2482,
1/B/2523:2525
Major groove platform
geometric
IL_4WF9_090
IL_48076.6
IL_5T7V_1901/B/2484:2488,
1/B/2516:2521
No text annotation
IL_5T7V_1241/B/2493:2497,
1/B/2507:2511
Triple sheared
geometric
IL_4WF9_093
IL_17948.2
IL_5T7V_1251/B/2534:2535,
1/B/2607:2609
Major groove platform
homologous
IL_4WF9_094
IL_07039.3
IL_5T7V_1261/B/2537:2539,
1/B/2601:2605
Isolated non-canonical cWW with bulges
homologous
IL_7RQB_097
NA
IL_5T7V_1271/B/2539:2540,
1/B/2598:2601
No text annotation
geometric
IL_4WF9_096
IL_42626.2
IL_5T7V_1281/B/2549:2550,
1/B/2567:2570
Major groove platform with intercalation
homologous
IL_4WF9_097
IL_02555.1
IL_5T7V_2211/B/2663:2667,
1/B/2801:2809
tSH-tHS-tHW
homologous
IL_4WF9_099
IL_04638.3
IL_5T7V_1941/B/2679:2685,
1/B/2690:2695
Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_4WF9_100
IL_16458.4
IL_5T7V_2221/B/2707:2711,
1/B/2752:2754
C-loop
homologous
IL_4WF9_101
IL_63596.11
IL_5T7V_1321/B/2714:2718,
1/B/2745:2749
No text annotation
homologous
IL_4WF9_102
IL_23774.1
IL_5T7V_2231/B/2722:2724,
1/B/2737:2741
Isolated non-canonical cWW pair
geometric
IL_4M4O_001
IL_87907.2
IL_5T7V_2241/B/2764:2769,
1/B/2789:2794
UAA/GAN with extra cWW
homologous
IL_4WF9_104
IL_49767.8
IL_5T7V_1351/B/2816:2831,
1/B/2909:2913
No text annotation
IL_5T7V_2251/B/2858:2859,
1/B/2898:2900
Major groove intercalation
homologous
IL_4WF9_106
IL_66635.5
IL_5T7V_1371/B/2863:2865,
1/B/2891:2894
No text annotation
homologous
IL_4WF9_107
IL_31531.3
IL_5T7V_2261/B/2867:2872,
1/B/2885:2889
tHS double platform
homologous
IL_4WF9_108
IL_70411.2
IL_5T7V_1991/C/5:17,
1/C/63:110
No text annotation
IL_5T7V_1391/C/14:17,
1/C/63:66
No text annotation
IL_5T7V_2271/C/18:19,
1/C/60:62
Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_5T7V_2281/C/21:27,
1/C/53:58
No text annotation
IL_5T7V_2291/C/28:30,
1/C/48:52
No text annotation
IL_5T7V_2301/C/31:36,
1/C/42:47
No text annotation

Problematic loops

#loop idProblemSequence
IL_5T7V_143Partly complementary
IL_5T7V_003No text annotation
IL_5T7V_144No text annotation
IL_5T7V_006No text annotation
IL_5T7V_007No text annotation
IL_5T7V_145No text annotation
IL_5T7V_014tSH-tHW-tHS-cWW
IL_5T7V_148No text annotation
IL_5T7V_022No text annotation
IL_5T7V_152No text annotation
IL_5T7V_155No text annotation
IL_5T7V_157No text annotation
IL_5T7V_036No text annotation
IL_5T7V_158No text annotation
IL_5T7V_037No text annotation
IL_5T7V_159No text annotation
IL_5T7V_160No text annotation
IL_5T7V_161tSH-tHW
IL_5T7V_162No text annotation
IL_5T7V_049No text annotation
IL_5T7V_163No text annotation
IL_5T7V_164Triple sheared
IL_5T7V_053No text annotation
IL_5T7V_165No text annotation
IL_5T7V_166No text annotation
IL_5T7V_168No text annotation
IL_5T7V_062No text annotation
IL_5T7V_169Partly complementary
IL_5T7V_063Isolated non-canonical cWW pair
IL_5T7V_170No text annotation
IL_5T7V_067Isolated cWS basepair
IL_5T7V_070No text annotation
IL_5T7V_073Tandem non-canonical cWW pairs
IL_5T7V_074Tandem non-canonical cWW pairs
IL_5T7V_075No text annotation
IL_5T7V_076No text annotation
IL_5T7V_077Tandem non-canonical cWW pairs
IL_5T7V_172Partly complementary
IL_5T7V_173No text annotation
IL_5T7V_174Kink-turn
IL_5T7V_175No text annotation
IL_5T7V_084No text annotation
IL_5T7V_176No text annotation
IL_5T7V_086No text annotation
IL_5T7V_177No text annotation
IL_5T7V_091No text annotation
IL_5T7V_092No text annotation
IL_5T7V_093No text annotation
IL_5T7V_180No text annotation
IL_5T7V_182No text annotation
IL_5T7V_183No text annotation
IL_5T7V_184Isolated non-canonical cWW pair
IL_5T7V_185No text annotation
IL_5T7V_106No text annotation
IL_5T7V_108No text annotation
IL_5T7V_188No text annotation
IL_5T7V_123No text annotation
IL_5T7V_191No text annotation
IL_5T7V_192No text annotation
IL_5T7V_129No text annotation
IL_5T7V_193No text annotation
IL_5T7V_1308x7 Sarcin-Ricin; G-bulge
IL_5T7V_195No text annotation
IL_5T7V_131No text annotation
IL_5T7V_196No text annotation
IL_5T7V_133No text annotation
IL_5T7V_197No text annotation
IL_5T7V_134No text annotation
IL_5T7V_198No text annotation
IL_5T7V_136No text annotation
IL_5T7V_138No text annotation
IL_5T7V_140No text annotation
IL_5T7V_141No text annotation
IL_5T7V_142No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5T7V_0181/A/45:57,
1/A/364:383,
1/A/397:406
No text annotation
J3_5T7V_0321/A/594:598,
1/A/657:662,
1/A/762:763
No text annotation
J3_5T7V_0331/A/594:598,
1/A/657:666,
1/A/755:763
No text annotation
J3_5T7V_0031/A/680:681,
1/A/725:733,
1/A/740:742
No text annotation
homologous
J3_5J7L_003
J3_11934.4
J3_5T7V_0201/A/680:685,
1/A/721:733,
1/A/740:742
No text annotation
J3_5T7V_0211/A/833:837,
1/A/866:870,
1/A/877:884
No text annotation
J3_5T7V_0041/A/834:837,
1/A/866:870,
1/A/877:883
No text annotation
homologous
J3_5J7L_004
J3_85054.4
J3_5T7V_0341/A/940:948,
1/A/1354:1360,
1/A/1382:1396
No text annotation
J3_5T7V_0351/A/961:971,
1/A/982:993,
1/A/1231:1239
No text annotation
J3_5T7V_0051/A/964:971,
1/A/982:993,
1/A/1231:1235
No text annotation
homologous
J3_5J7L_006
J3_83516.4
J3_5T7V_0231/A/1074:1079,
1/A/1118:1127,
1/A/1194:1203
No text annotation
J3_5T7V_0061/A/1083:1085,
1/A/1094:1098,
1/A/1109:1114
No text annotation
J3_5T7V_0071/B/30:31,
1/B/520:527,
1/B/554:555
No text annotation
homologous
J3_7A0S_001
J3_60031.2
J3_5T7V_0241/B/32:35,
1/B/491:507,
1/B/514:519
No text annotation
homologous
J3_4WF9_012
J3_30040.2
J3_5T7V_0081/B/55:57,
1/B/70:76,
1/B/109:114
No text annotation
J3_5T7V_0091/B/300:302,
1/B/415:421,
1/B/445:450
No text annotation
J3_5T7V_0251/B/340:344,
1/B/359:368,
1/B/380:384
No text annotation
homologous
J3_4WF9_015
J3_46299.2
J3_5T7V_0361/B/728:734,
1/B/818:820,
1/B/836:839
No text annotation
homologous
J3_4WF9_002
J3_64189.2
J3_5T7V_0111/B/743:745,
1/B/777:781,
1/B/805:808
No text annotation
homologous
J3_7RQB_005
NA
J3_5T7V_0121/B/1335:1340,
1/B/1669:1671,
1/B/1683:1686
No text annotation
homologous
J3_4WF9_004
J3_32852.6
J3_5T7V_0371/B/1343:1346,
1/B/1649:1655,
1/B/1664:1666
No text annotation
homologous
J3_9DFE_011
J3_71677.1
J3_5T7V_0271/B/1347:1351,
1/B/1375:1383,
1/B/1644:1648
No text annotation
J3_5T7V_0381/B/1381:1387,
1/B/1418:1422,
1/B/1439:1440
No text annotation
homologous
J3_4WF9_016
J3_31965.2
J3_5T7V_0391/B/1468:1480,
1/B/1604:1612,
1/B/1615:1621
No text annotation
J3_5T7V_0141/B/2117:2120,
1/B/2223:2228,
1/B/2249:2256
No text annotation
geometric
J3_5TBW_012
NA
J3_5T7V_0291/B/2309:2311,
1/B/2411:2422,
1/B/2448:2454
No text annotation
homologous
J3_7A0S_020
J3_20992.1
J3_5T7V_0151/B/2322:2324,
1/B/2348:2350,
1/B/2359:2364
No text annotation
homologous
J3_4WF9_008
J3_61124.2
J3_5T7V_0161/B/2544:2547,
1/B/2572:2574,
1/B/2588:2594
No text annotation
homologous
J3_4WF9_009
J3_32601.5
J3_5T7V_0401/B/2816:2835,
1/B/2851:2856,
1/B/2902:2913
No text annotation
J3_5T7V_0171/B/2833:2835,
1/B/2851:2856,
1/B/2902:2907
No text annotation
J3_5T7V_0411/D/6:12,
1/D/23:49,
1/D/65:67
No text annotation
J4_5T7V_0111/A/114:122,
1/A/246:255,
1/A/285:297,
1/A/319:320
No text annotation
J4_5T7V_0121/A/577:585,
1/A/772:777,
1/A/818:829,
1/A/888:890
No text annotation
J4_5T7V_0131/A/951:955,
1/A/1245:1251,
1/A/1306:1313,
1/A/1344:1352
No text annotation
J4_5T7V_0041/B/644:647,
1/B/669:673,
1/B/680:684,
1/B/694:701
No text annotation
homologous
J4_4WF9_003
J4_60168.1
J4_5T7V_0141/B/1308:1313,
1/B/1331:1332,
1/B/1689:1692,
1/B/2036:2037
No text annotation
homologous
J4_4WF9_004
J4_64571.5
J4_5T7V_0151/B/1347:1351,
1/B/1375:1380,
1/B/1441:1442,
1/B/1641:1648
No text annotation
homologous
J4_4WF9_005
J4_69051.6
J4_5T7V_0061/B/1385:1387,
1/B/1418:1425,
1/B/1436:1443,
1/B/1640:1642
No text annotation
J4_5T7V_0071/B/1799:1803,
1/B/1815:1819,
1/B/1854:1857,
1/B/2002:2006
No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_5T7V_0161/B/1860:1867,
1/B/1929:1933,
1/B/1951:1960,
1/B/1994:1999
No text annotation
J4_5T7V_0171/B/2312:2319,
1/B/2368:2374,
1/B/2397:2399,
1/B/2408:2410
No text annotation
J4_5T7V_0101/B/2670:2673,
1/B/2701:2703,
1/B/2758:2762,
1/B/2796:2798
No text annotation
homologous
J4_5J7L_028
J4_77044.4
J5_5T7V_0011/A/37:40,
1/A/411:424,
1/A/435:452,
1/A/498:508,
1/A/553:556
No text annotation
J5_5T7V_0021/A/59:62,
1/A/105:112,
1/A/322:324,
1/A/345:347,
1/A/358:362
No text annotation
homologous
J5_4LFB_002
J5_59910.6
J5_5T7V_0091/B/271:276,
1/B/295:302,
1/B/415:421,
1/B/445:452,
1/B/467:470
No text annotation
J5_5T7V_0041/B/576:578,
1/B/603:607,
1/B/620:622,
1/B/1299:1307,
1/B/2038:2045
No text annotation
J5_5T7V_0051/B/627:632,
1/B/713:716,
1/B/854:857,
1/B/1234:1235,
1/B/1288:1294
No text annotation
homologous
J5_4WF9_004
J5_74302.5
J5_5T7V_0101/B/1718:1726,
1/B/1750:1751,
1/B/1778:1779,
1/B/1783:1791,
1/B/2015:2017
No text annotation
homologous
J5_4WF9_005
J5_62523.6
J5_5T7V_0071/B/2084:2091,
1/B/2473:2480,
1/B/2527:2534,
1/B/2609:2615,
1/B/2633:2638
No text annotation
J5_5T7V_0111/B/2101:2104,
1/B/2270:2273,
1/B/2285:2286,
1/B/2308:2309,
1/B/2454:2462
No text annotation
homologous
J5_4WF9_007
J5_39529.1
J6_5T7V_0011/B/2100:2105,
1/B/2269:2273,
1/B/2285:2286,
1/B/2308:2311,
1/B/2411:2422,
1/B/2448:2463
No text annotation
J6_5T7V_0021/B/2101:2104,
1/B/2270:2273,
1/B/2285:2286,
1/B/2308:2311,
1/B/2411:2422,
1/B/2448:2462
No text annotation
J7_5T7V_0031/B/8:15,
1/B/570:576,
1/B/2045:2050,
1/B/2067:2070,
1/B/2652:2657,
1/B/2815:2816,
1/B/2913:2914
No text annotation
J7_5T7V_0041/B/862:867,
1/B/880:881,
1/B/987:990,
1/B/1015:1020,
1/B/1031:1035,
1/B/1207:1208,
1/B/1224:1229
No text annotation
J10_5T7V_0021/B/45:57,
1/B/70:77,
1/B/108:120,
1/B/129:130,
1/B/149:151,
1/B/178:186,
1/B/217:227,
1/B/234:238,
1/B/265:269,
1/B/472:479
No text annotation

Problematic loops

#loop idProblemSequence
J3_5T7V_001No text annotation
J3_5T7V_002No text annotation
J3_5T7V_019No text annotation
J3_5T7V_022No text annotation
J3_5T7V_010No text annotation
J3_5T7V_026No text annotation
J3_5T7V_013No text annotation
J3_5T7V_028No text annotation
J3_5T7V_030No text annotation
J3_5T7V_031No text annotation
J4_5T7V_001No text annotation
J4_5T7V_002No text annotation
J4_5T7V_003No text annotation
J4_5T7V_005No text annotation
J4_5T7V_008No text annotation
J4_5T7V_009No text annotation
J5_5T7V_003No text annotation
J5_5T7V_006No text annotation
J5_5T7V_008No text annotation
J7_5T7V_001No text annotation
J7_5T7V_002No text annotation
J10_5T7V_001No text annotation

Coloring options:
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