Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5T7V_0011/A/13:23No text annotation
Not in a motif group
homologous
HL_5J7L_001
HL_89881.2
HL_5T7V_0031/A/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_42097.2
HL_5T7V_0041/A/267:275No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_5T7V_0051/A/304:309GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.2
HL_5T7V_0061/A/330:340No text annotation
Not in a motif group
HL_5T7V_0071/A/350:355No text annotation
Not in a motif group
homologous
HL_6CZR_080
HL_03562.2
HL_5T7V_0081/A/386:394No text annotation
Not in a motif group
HL_5T7V_0091/A/425:434No text annotation
Not in a motif group
HL_5T7V_0101/A/452:498No text annotation
Not in a motif group
HL_5T7V_0111/A/530:535No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_5T7V_0121/A/623:633No text annotation
Not in a motif group
HL_5T7V_0131/A/697:706No text annotation
Not in a motif group
geometric
HL_6CZR_086
HL_12326.1
HL_5T7V_0141/A/734:739Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_5T7V_0151/A/794:804No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_5T7V_0161/A/845:858No text annotation
Not in a motif group
HL_5T7V_0171/A/871:876GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.2
HL_5T7V_0181/A/906:911GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.2
HL_5T7V_0191/A/972:981No text annotation
Not in a motif group
geometric
HL_1WZ2_007
HL_10278.1
HL_5T7V_0201/A/1087:1092GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_42097.2
HL_5T7V_0211/A/1100:1107No text annotation
Not in a motif group
homologous
HL_5J7L_024
HL_71554.2
HL_5T7V_0231/A/1172:1184No text annotation
Not in a motif group
HL_5T7V_0241/A/1269:1286No text annotation
Not in a motif group
HL_5T7V_0251/A/1324:1333No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_5T7V_0261/A/1459:1465No text annotation
Not in a motif group
geometric
HL_6VMY_004
HL_91058.1
HL_5T7V_0271/A/1526:1531No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_5T7V_0281/B/57:70No text annotation
Not in a motif group
HL_5T7V_0291/B/87:95No text annotation
Not in a motif group
HL_5T7V_0301/B/122:127No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_5T7V_0311/B/136:143No text annotation
Not in a motif group
homologous
HL_4WF9_004
HL_84085.2
HL_5T7V_0321/B/158:170No text annotation
Not in a motif group
geometric
HL_2ZNI_001
HL_75407.1
HL_5T7V_0331/B/190:212No text annotation
Not in a motif group
HL_5T7V_0341/B/228:233No text annotation
Not in a motif group
homologous
HL_4WF9_007
HL_02862.2
HL_5T7V_0351/B/249:255No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_5T7V_0361/B/280:291No text annotation
Not in a motif group
HL_5T7V_0371/B/346:357No text annotation
Not in a motif group
HL_5T7V_0381/B/362:366No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_5T7V_0391/B/370:378No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.9
HL_5T7V_0401/B/426:440No text annotation
Not in a motif group
HL_5T7V_0411/B/456:463No text annotation
Not in a motif group
homologous
HL_7A0S_014
HL_96598.1
HL_5T7V_0421/B/508:513GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_42097.2
HL_5T7V_0431/B/533:538GNRA
Not in a motif group
homologous
HL_4WF9_016
HL_42097.2
HL_5T7V_0441/B/586:595No text annotation
Not in a motif group
HL_5T7V_0451/B/607:620No text annotation
Not in a motif group
HL_5T7V_0461/B/655:661No text annotation
Not in a motif group
geometric
HL_2ZNI_001
HL_75407.1
HL_5T7V_0471/B/674:679GNRA
Not in a motif group
homologous
HL_4WF9_020
HL_42097.2
HL_5T7V_0481/B/686:692GNRA with one bulged base
Not in a motif group
homologous
HL_4WF9_021
HL_42097.2
HL_5T7V_0491/B/757:764No text annotation
Not in a motif group
geometric
HL_2ZNI_001
HL_75407.1
HL_5T7V_0501/B/789:798No text annotation
Not in a motif group
homologous
HL_7A0S_022
HL_39334.6
HL_5T7V_0511/B/824:830No text annotation
Not in a motif group
homologous
HL_4WF9_024
HL_74322.1
HL_5T7V_0521/B/871:876No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_5T7V_0531/B/999:1006GNRA
Not in a motif group
homologous
HL_4WF9_027
HL_42097.2
HL_5T7V_0541/B/1022:1029No text annotation
Not in a motif group
homologous
HL_5J7L_160
HL_64430.2
HL_5T7V_0551/B/1136:1143No text annotation
Not in a motif group
HL_5T7V_0561/B/1213:1219No text annotation
Not in a motif group
HL_5T7V_0571/B/1260:1265No text annotation
Not in a motif group
homologous
HL_4WF9_031
HL_87030.2
HL_5T7V_0581/B/1317:1327No text annotation
Not in a motif group
geometric
HL_4V7M_040
HL_22031.1
HL_5T7V_0591/B/1361:1367No text annotation
Not in a motif group
homologous
HL_4WF9_033
HL_46680.1
HL_5T7V_0601/B/1400:1405Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_5T7V_0611/B/1426:1435No text annotation
Not in a motif group
homologous
HL_4WF9_035
HL_69023.2
HL_5T7V_0631/B/1612:1615No text annotation
Not in a motif group
homologous
HL_7A0S_039
HL_38927.2
HL_5T7V_0641/B/1656:1663No text annotation
Not in a motif group
homologous
HL_4WF9_038
HL_64430.2
HL_5T7V_0651/B/1673:1681No text annotation
Not in a motif group
homologous
HL_4WF9_039
HL_92229.2
HL_5T7V_0661/B/1735:1740No text annotation
Not in a motif group
geometric
HL_7A0S_042
HL_03562.2
HL_5T7V_0671/B/1761:1769No text annotation
Not in a motif group
HL_5T7V_0681/B/1779:1783No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_5T7V_0691/B/1804:1814No text annotation
Not in a motif group
homologous
HL_4WF9_043
HL_43613.5
HL_5T7V_0701/B/1833:1838No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_42097.2
HL_5T7V_0711/B/1895:1900No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98984.2
HL_5T7V_0721/B/1937:1947No text annotation
Not in a motif group
HL_5T7V_0731/B/1976:1984No text annotation
Not in a motif group
homologous
HL_5J7L_182
HL_51824.1
HL_5T7V_0741/B/2054:2063No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_5T7V_0761/B/2236:2242No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_5T7V_0771/B/2275:2283No text annotation
Not in a motif group
homologous
HL_5J7L_186
NA
HL_5T7V_0781/B/2291:2303No text annotation
Not in a motif group
homologous
HL_4WF9_050
HL_19870.6
HL_5T7V_0791/B/2329:2341No text annotation
Not in a motif group
HL_5T7V_0801/B/2350:2359No text annotation
Not in a motif group
geometric
HL_2ZZM_002
HL_23083.1
HL_5T7V_0811/B/2382:2389No text annotation
Not in a motif group
homologous
HL_4WF9_053
HL_09136.1
HL_5T7V_0821/B/2401:2406GNRA
Not in a motif group
homologous
HL_4WF9_054
HL_42097.2
HL_5T7V_0831/B/2431:2440No text annotation
Not in a motif group
homologous
HL_4WF9_055
HL_30784.2
HL_5T7V_0841/B/2497:2507No text annotation
Not in a motif group
HL_5T7V_0851/B/2555:2562No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_91104.1
HL_5T7V_0861/B/2578:2584No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_5T7V_0871/B/2621:2626GNRA
Not in a motif group
homologous
HL_4WF9_059
HL_42097.2
HL_5T7V_0881/B/2685:2690GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_42097.2
HL_5T7V_0891/B/2728:2733Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_5T7V_0901/B/2772:2786No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_5T7V_0911/B/2838:2848No text annotation
Not in a motif group
HL_5T7V_0921/B/2876:2881No text annotation
Not in a motif group
homologous
HL_7A0S_068
HL_42097.2
HL_5T7V_0931/C/36:42No text annotation
Not in a motif group
geometric
HL_4V9F_071
HL_87939.1
HL_5T7V_0941/C/77:94No text annotation
Not in a motif group
HL_5T7V_0951/D/13:22No text annotation
Not in a motif group
HL_5T7V_0961/D/28:42No text annotation
Not in a motif group
HL_5T7V_0971/D/52:62No text annotation
Not in a motif group
homologous
HL_4V7M_040
HL_22031.1

Problematic loops

#loop idProblemSequence
HL_5T7V_002No text annotation
HL_5T7V_022No text annotation
HL_5T7V_062No text annotation
HL_5T7V_075No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5T7V_0011/A/31:33,
1/A/560:561
Single bulged G
Not in a motif group
homologous
IL_6CZR_113
IL_00225.3
IL_5T7V_0021/A/48:58,
1/A/363:369
No text annotation
Not in a motif group
IL_5T7V_0041/A/207:211,
1/A/224:227
No text annotation
Not in a motif group
IL_5T7V_0051/A/250:255,
1/A/285:292
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_5T7V_0061/A/256:261,
1/A/281:284
No text annotation
Not in a motif group
IL_5T7V_0071/A/299:302,
1/A/311:317
No text annotation
Not in a motif group
IL_5T7V_0081/A/327:330,
1/A/340:342
No text annotation
Not in a motif group
IL_5T7V_0091/A/383:386,
1/A/394:397
No text annotation
Not in a motif group
IL_5T7V_0101/A/414:424,
1/A/435:444
No text annotation
Not in a motif group
IL_5T7V_0111/A/512:519,
1/A/548:549
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_5T7V_0121/A/519:530,
1/A/535:548
No text annotation
Not in a motif group
IL_5T7V_0131/A/577:583,
1/A/889:890
No text annotation
Not in a motif group
homologous
IL_6CZR_134
IL_69996.1
IL_5T7V_0141/A/587:592,
1/A/765:770
tSH-tHW-tHS-cWW
Not in a motif group
geometric
IL_3LQX_002
IL_76308.4
IL_5T7V_0151/A/602:605,
1/A/651:653
No text annotation
Not in a motif group
homologous
IL_6CZR_136
IL_05564.2
IL_5T7V_0161/A/605:607,
1/A/647:651
8-nt loop receptor
Not in a motif group
geometric
IL_6CK5_002
IL_93341.1
IL_5T7V_0171/A/612:621,
1/A/635:642
No text annotation
Not in a motif group
IL_5T7V_0181/A/662:665,
1/A/757:762
No text annotation
Not in a motif group
IL_5T7V_0191/A/665:667,
1/A/754:757
No text annotation
Not in a motif group
IL_5T7V_0201/A/669:674,
1/A/748:752
No text annotation
Not in a motif group
IL_5T7V_0211/A/681:686,
1/A/720:725
No text annotation
Not in a motif group
geometric
IL_4LFB_030
IL_04668.1
IL_5T7V_0221/A/692:697,
1/A/706:714
No text annotation
Not in a motif group
IL_5T7V_0231/A/782:787,
1/A/811:813
Other IL
Not in a motif group
geometric
IL_4V88_435
IL_22046.1
IL_5T7V_0241/A/787:791,
1/A/807:811
tSH-tHW-tHS
Not in a motif group
geometric
IL_4LFB_033
IL_17136.1
IL_5T7V_0251/A/896:903,
1/A/914:919
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_5T7V_0261/A/934:936,
1/A/1400:1401
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_00225.3
IL_5T7V_0271/A/940:945,
1/A/1389:1396
No text annotation
Not in a motif group
IL_5T7V_0281/A/945:948,
1/A/1354:1389
No text annotation
Not in a motif group
IL_5T7V_0291/A/949:951,
1/A/1352:1353
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_76488.2
IL_5T7V_0301/A/961:964,
1/A/1235:1239
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_6JDV_002
IL_30621.3
IL_5T7V_0311/A/1069:1074,
1/A/1203:1209
No text annotation
Not in a motif group
IL_5T7V_0321/A/1251:1256,
1/A/1302:1306
No text annotation
Not in a motif group
IL_5T7V_0331/A/1263:1268,
1/A/1287:1294
No text annotation
Not in a motif group
IL_5T7V_0341/A/1414:1419,
1/A/1502:1508
No text annotation
Not in a motif group
IL_5T7V_0351/A/1422:1424,
1/A/1497:1499
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_5T7V_0361/A/1425:1430,
1/A/1491:1496
No text annotation
Not in a motif group
IL_5T7V_0371/A/1433:1437,
1/A/1484:1488
No text annotation
Not in a motif group
geometric
IL_5TBW_121
IL_05145.2
IL_5T7V_0381/A/1440:1445,
1/A/1477:1481
Triple sheared related
Not in a motif group
geometric
IL_4V9F_018
IL_64879.2
IL_5T7V_0391/A/1445:1448,
1/A/1474:1477
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_6JDV_002
IL_30621.3
IL_5T7V_0401/A/1449:1454,
1/A/1469:1473
No text annotation
Not in a motif group
IL_5T7V_0411/A/1455:1459,
1/A/1465:1468
No text annotation
Not in a motif group
IL_5T7V_0421/B/24:30,
1/B/555:561
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_4WF9_001
IL_66414.6
IL_5T7V_0431/B/36:37,
1/B/488:490
Single bulged A
Not in a motif group
homologous
IL_7A0S_002
IL_37497.3
IL_5T7V_0441/B/42:44,
1/B/480:483
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_4WF9_003
IL_65006.1
IL_5T7V_0451/B/81:85,
1/B/97:104
Kink-turn
Not in a motif group
homologous
IL_4WF9_004
IL_45067.2
IL_5T7V_0461/B/152:154,
1/B/174:177
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_4V9F_097
IL_82068.2
IL_5T7V_0471/B/186:187,
1/B/215:217
Single stack bend
Not in a motif group
homologous
IL_7A0S_005
IL_76488.2
IL_5T7V_0481/B/241:248,
1/B/256:262
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4WF9_009
IL_04346.7
IL_5T7V_0491/B/304:307,
1/B/408:413
No text annotation
Not in a motif group
IL_5T7V_0501/B/336:339,
1/B/385:390
No text annotation
Not in a motif group
IL_5T7V_0511/B/527:530,
1/B/541:554
No text annotation
Not in a motif group
homologous
IL_4WF9_015
IL_60992.6
IL_5T7V_0521/B/581:584,
1/B/597:600
Double sheared
Not in a motif group
homologous
IL_4WF9_016
IL_09705.9
IL_5T7V_0531/B/635:640,
1/B/705:710
No text annotation
Not in a motif group
geometric
IL_6O5F_001
IL_04668.1
IL_5T7V_0541/B/649:653,
1/B/663:667
AAA cross-strand stack
Not in a motif group
homologous
IL_4WF9_019
IL_17136.1
IL_5T7V_0551/B/717:719,
1/B/851:853
No text annotation
Not in a motif group
homologous
IL_7A0S_014
IL_95997.1
IL_5T7V_0561/B/719:723,
1/B/844:851
tHW-tHW cross-strand stack
Not in a motif group
geometric
IL_4WF9_021
IL_17470.6
IL_5T7V_0571/B/742:743,
1/B/808:810
Single bulged A
Not in a motif group
homologous
IL_5J7L_261
IL_37497.3
IL_5T7V_0581/B/747:752,
1/B/769:775
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_5T7V_0591/B/783:785,
1/B/802:803
Major groove platform
Not in a motif group
homologous
IL_4WF9_026
IL_27635.2
IL_5T7V_0601/B/820:822,
1/B/832:836
Multiple bulged bases
Not in a motif group
geometric
IL_4WF9_027
IL_90991.6
IL_5T7V_0611/B/882:883,
1/B/984:986
Single stack bend
Not in a motif group
homologous
IL_7A0S_022
IL_92001.1
IL_5T7V_0621/B/886:893,
1/B/975:981
No text annotation
Not in a motif group
IL_5T7V_0631/B/897:899,
1/B/968:971
No text annotation
Not in a motif group
homologous
IL_7A0S_026
IL_51629.2
IL_5T7V_0641/B/901:907,
1/B/960:966
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_4WF9_031
IL_93830.3
IL_5T7V_0651/B/907:909,
1/B/957:960
No text annotation
Not in a motif group
IL_5T7V_0661/B/909:913,
1/B/954:957
C-loop
Not in a motif group
geometric
IL_4WF9_033
IL_02509.1
IL_5T7V_0671/B/915:917,
1/B/950:952
Isolated cWS basepair
Not in a motif group
homologous
IL_4WF9_034
IL_52767.2
IL_5T7V_0681/B/1038:1040,
1/B/1203:1204
Single bulged C
Not in a motif group
homologous
IL_5J7L_276
IL_61258.12
IL_5T7V_0691/B/1042:1046,
1/B/1197:1201
UAA/GAN
Not in a motif group
homologous
IL_4WF9_036
IL_89002.2
IL_5T7V_0701/B/1047:1059,
1/B/1191:1196
No text annotation
Not in a motif group
IL_5T7V_0711/B/1062:1068,
1/B/1184:1188
No text annotation
Not in a motif group
geometric
IL_4WF9_039
IL_57188.3
IL_5T7V_0721/B/1068:1074,
1/B/1168:1184
No text annotation
Not in a motif group
geometric
IL_4WF9_040
IL_50715.1
IL_5T7V_0731/B/1074:1078,
1/B/1165:1168
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5J7L_033
IL_71110.1
IL_5T7V_0741/B/1081:1084,
1/B/1159:1162
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1MFQ_004
IL_30621.3
IL_5T7V_0751/B/1085:1096,
1/B/1151:1158
No text annotation
Not in a motif group
IL_5T7V_0771/B/1235:1238,
1/B/1284:1288
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_3WBM_002
IL_30621.3
IL_5T7V_0781/B/1243:1245,
1/B/1277:1279
Isolated cWH basepair
Not in a motif group
homologous
IL_4WF9_045
IL_51629.2
IL_5T7V_0791/B/1246:1253,
1/B/1272:1276
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_5T7V_0801/B/1257:1259,
1/B/1266:1268
Intercalated cWW
Not in a motif group
homologous
IL_4WF9_047
IL_82842.2
IL_5T7V_0811/B/1300:1307,
1/B/2038:2044
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4WF9_048
IL_04346.7
IL_5T7V_0821/B/1356:1360,
1/B/1368:1370
Major groove minor groove platform with tHH
Not in a motif group
homologous
IL_4WF9_050
IL_37712.2
IL_5T7V_0831/B/1388:1392,
1/B/1413:1417
UAA/GAN
Not in a motif group
homologous
IL_7A0S_048
IL_89002.2
IL_5T7V_0841/B/1393:1398,
1/B/1407:1412
No text annotation
Not in a motif group
IL_5T7V_0851/B/1447:1452,
1/B/1631:1636
No text annotation
Not in a motif group
IL_5T7V_0871/B/1461:1465,
1/B/1624:1627
Other IL
Not in a motif group
homologous
IL_4WF9_054
IL_04059.1
IL_5T7V_0881/B/1474:1480,
1/B/1604:1610
No text annotation
Not in a motif group
IL_5T7V_0891/B/1480:1485,
1/B/1598:1604
No text annotation
Not in a motif group
IL_5T7V_0901/B/1485:1510,
1/B/1571:1598
No text annotation
Not in a motif group
IL_5T7V_0911/B/1511:1516,
1/B/1564:1570
No text annotation
Not in a motif group
homologous
IL_4WF9_058
IL_88190.1
IL_5T7V_0921/B/1516:1523,
1/B/1557:1564
No text annotation
Not in a motif group
IL_5T7V_0941/B/1695:1700,
1/B/2031:2033
No text annotation
Not in a motif group
homologous
IL_4WF9_062
IL_12566.2
IL_5T7V_0951/B/1707:1709,
1/B/2022:2024
Isolated tWW turn
Not in a motif group
homologous
IL_5J7L_305
IL_54997.7
IL_5T7V_0961/B/1710:1713,
1/B/2020:2021
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4WF9_064
IL_50694.2
IL_5T7V_0971/B/1713:1718,
1/B/2017:2020
Intercalated tWH
Not in a motif group
geometric
IL_4WF9_065
IL_82842.2
IL_5T7V_0981/B/1730:1735,
1/B/1740:1746
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_7RQB_068
IL_65969.2
IL_5T7V_0991/B/1754:1756,
1/B/1774:1775
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_76488.2
IL_5T7V_1001/B/1756:1761,
1/B/1769:1774
No text annotation
Not in a motif group
IL_5T7V_1011/B/1797:1798,
1/B/2007:2009
Single bulged A
Not in a motif group
homologous
IL_4WF9_068
IL_37497.3
IL_5T7V_1021/B/1825:1831,
1/B/1840:1848
Kink-turn related
Not in a motif group
homologous
IL_7RQB_070
IL_17069.3
IL_5T7V_1031/B/1863:1867,
1/B/1929:1931
No text annotation
Not in a motif group
IL_5T7V_1041/B/1868:1869,
1/B/1925:1928
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_7A0S_067
IL_16396.2
IL_5T7V_1051/B/1873:1876,
1/B/1920:1921
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.6
IL_5T7V_1061/B/1877:1882,
1/B/1914:1919
No text annotation
Not in a motif group
IL_5T7V_1071/B/1883:1887,
1/B/1909:1913
Triple sheared
Not in a motif group
homologous
IL_4WF9_074
IL_96141.1
IL_5T7V_1081/B/1890:1895,
1/B/1900:1906
No text annotation
Not in a motif group
IL_5T7V_1091/B/1960:1961,
1/B/1991:1994
No text annotation
Not in a motif group
geometric
IL_4WF9_076
IL_59677.2
IL_5T7V_1101/B/1961:1972,
1/B/1988:1991
No text annotation
Not in a motif group
homologous
IL_7A0S_072
IL_81589.2
IL_5T7V_1111/B/2077:2079,
1/B/2644:2645
Major groove platform
Not in a motif group
homologous
IL_4WF9_078
IL_27635.2
IL_5T7V_1121/B/2081:2083,
1/B/2639:2642
No text annotation
Not in a motif group
homologous
IL_5J7L_321
IL_54678.5
IL_5T7V_1131/B/2094:2096,
1/B/2469:2470
Single bulged U
Not in a motif group
homologous
IL_7RQB_080
IL_83039.14
IL_5T7V_1141/B/2097:2098,
1/B/2465:2468
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.2
IL_5T7V_1151/B/2108:2110,
1/B/2263:2266
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_4WF9_082
IL_38958.7
IL_5T7V_1161/B/2121:2126,
1/B/2217:2222
No text annotation
Not in a motif group
geometric
IL_6O5F_001
IL_04668.1
IL_5T7V_1171/B/2229:2231,
1/B/2247:2248
Single bulged G
Not in a motif group
geometric
IL_3NDB_004
IL_00225.3
IL_5T7V_1181/B/2324:2326,
1/B/2344:2348
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_4WF9_086
IL_38958.7
IL_5T7V_1191/B/2377:2380,
1/B/2391:2394
Double sheared
Not in a motif group
homologous
IL_4WF9_087
IL_09705.9
IL_5T7V_1201/B/2428:2430,
1/B/2441:2442
Single bulged U
Not in a motif group
homologous
IL_4WF9_088
IL_83039.14
IL_5T7V_1211/B/2480:2481,
1/B/2525:2527
Single stack bend
Not in a motif group
homologous
IL_4WF9_089
IL_76488.2
IL_5T7V_1221/B/2481:2482,
1/B/2523:2525
Major groove platform
Not in a motif group
geometric
IL_4WF9_090
IL_27635.2
IL_5T7V_1231/B/2483:2488,
1/B/2516:2522
No text annotation
Not in a motif group
IL_5T7V_1241/B/2493:2497,
1/B/2507:2511
Triple sheared
Not in a motif group
geometric
IL_4WF9_093
IL_56467.8
IL_5T7V_1251/B/2534:2535,
1/B/2607:2609
Major groove platform
Not in a motif group
homologous
IL_4WF9_094
IL_76223.2
IL_5T7V_1261/B/2537:2539,
1/B/2601:2605
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_097
IL_90933.2
IL_5T7V_1271/B/2539:2540,
1/B/2598:2601
No text annotation
Not in a motif group
geometric
IL_4WF9_096
IL_71530.2
IL_5T7V_1281/B/2549:2550,
1/B/2567:2570
Minor groove platform with intercalation
Not in a motif group
homologous
IL_4WF9_097
IL_95601.3
IL_5T7V_1291/B/2662:2667,
1/B/2801:2810
No text annotation
Not in a motif group
IL_5T7V_1301/B/2678:2685,
1/B/2690:2696
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5J7L_289
IL_04346.7
IL_5T7V_1311/B/2707:2713,
1/B/2750:2754
No text annotation
Not in a motif group
IL_5T7V_1321/B/2714:2718,
1/B/2745:2749
No text annotation
Not in a motif group
homologous
IL_4WF9_102
IL_08296.3
IL_5T7V_1331/B/2722:2725,
1/B/2736:2741
No text annotation
Not in a motif group
IL_5T7V_1341/B/2764:2770,
1/B/2788:2794
No text annotation
Not in a motif group
IL_5T7V_1351/B/2816:2831,
1/B/2909:2913
No text annotation
Not in a motif group
IL_5T7V_1361/B/2858:2861,
1/B/2896:2900
No text annotation
Not in a motif group
IL_5T7V_1371/B/2863:2865,
1/B/2891:2894
No text annotation
Not in a motif group
homologous
IL_4WF9_107
IL_02284.5
IL_5T7V_1381/B/2867:2873,
1/B/2884:2889
No text annotation
Not in a motif group
IL_5T7V_1391/C/14:17,
1/C/63:66
No text annotation
Not in a motif group
IL_5T7V_1401/C/17:19,
1/C/60:63
No text annotation
Not in a motif group
geometric
IL_4N0T_004
IL_46796.1
IL_5T7V_1411/C/20:27,
1/C/53:59
No text annotation
Not in a motif group
homologous
IL_4WF9_113
IL_19048.1
IL_5T7V_1421/C/28:36,
1/C/42:52
No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
IL_5T7V_003No text annotation
IL_5T7V_076No text annotation
IL_5T7V_086No text annotation
IL_5T7V_093No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5T7V_0021/A/594:599,
1/A/656:662,
1/A/762:763
No text annotation
Not in a motif group
J3_5T7V_0031/A/680:681,
1/A/725:733,
1/A/740:742
No text annotation
Not in a motif group
homologous
J3_5J7L_003
NA
J3_5T7V_0041/A/834:837,
1/A/866:870,
1/A/877:883
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_5T7V_0051/A/964:971,
1/A/982:993,
1/A/1231:1235
No text annotation
Not in a motif group
J3_5T7V_0061/A/1083:1085,
1/A/1094:1098,
1/A/1109:1114
No text annotation
Not in a motif group
J3_5T7V_0071/B/30:31,
1/B/520:527,
1/B/554:555
No text annotation
Not in a motif group
J3_5T7V_0081/B/55:57,
1/B/70:76,
1/B/109:114
No text annotation
Not in a motif group
J3_5T7V_0091/B/300:302,
1/B/415:421,
1/B/445:450
No text annotation
Not in a motif group
J3_5T7V_0101/B/727:734,
1/B/818:820,
1/B/836:840
No text annotation
Not in a motif group
J3_5T7V_0111/B/743:745,
1/B/777:781,
1/B/805:808
No text annotation
Not in a motif group
J3_5T7V_0121/B/1335:1340,
1/B/1669:1671,
1/B/1683:1686
No text annotation
Not in a motif group
homologous
J3_4WF9_004
NA
J3_5T7V_0131/B/1342:1346,
1/B/1649:1655,
1/B/1664:1667
No text annotation
Not in a motif group
homologous
J3_4WF9_005
NA
J3_5T7V_0141/B/2117:2120,
1/B/2223:2228,
1/B/2249:2256
No text annotation
Not in a motif group
J3_5T7V_0151/B/2322:2324,
1/B/2348:2350,
1/B/2359:2364
No text annotation
Not in a motif group
J3_5T7V_0161/B/2544:2547,
1/B/2572:2574,
1/B/2588:2594
No text annotation
Not in a motif group
J3_5T7V_0171/B/2833:2835,
1/B/2851:2856,
1/B/2902:2907
No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
J3_5T7V_001No text annotation

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