5T7V | Motifs

97 Hairpin loops
142 Internal loops
17 Junction loops

Valid loops

#	loop id	location	annotation	motif
1	HL_5T7V_001 ➜	1/A/13:23	NA	NA
2	HL_5T7V_003 ➜	1/A/158:163	NA	NA
3	HL_5T7V_004 ➜	1/A/267:275	NA	NA
4	HL_5T7V_005 ➜	1/A/304:309	NA	NA
5	HL_5T7V_006 ➜	1/A/330:340	NA	NA
6	HL_5T7V_007 ➜	1/A/350:355	NA	NA
7	HL_5T7V_008 ➜	1/A/386:394	NA	NA
8	HL_5T7V_009 ➜	1/A/425:434	NA	NA
9	HL_5T7V_010 ➜	1/A/452:498	NA	NA
10	HL_5T7V_011 ➜	1/A/530:535	NA	NA
11	HL_5T7V_012 ➜	1/A/623:633	NA	NA
12	HL_5T7V_013 ➜	1/A/697:706	NA	NA
13	HL_5T7V_014 ➜	1/A/734:739	NA	NA
14	HL_5T7V_015 ➜	1/A/794:804	NA	NA
15	HL_5T7V_016 ➜	1/A/845:858	NA	NA
16	HL_5T7V_017 ➜	1/A/871:876	NA	NA
17	HL_5T7V_018 ➜	1/A/906:911	NA	NA
18	HL_5T7V_019 ➜	1/A/972:981	NA	NA
19	HL_5T7V_020 ➜	1/A/1087:1092	NA	NA
20	HL_5T7V_021 ➜	1/A/1100:1107	NA	NA
21	HL_5T7V_023 ➜	1/A/1172:1184	NA	NA
22	HL_5T7V_024 ➜	1/A/1269:1286	NA	NA
23	HL_5T7V_025 ➜	1/A/1324:1333	NA	NA
24	HL_5T7V_026 ➜	1/A/1459:1465	NA	NA
25	HL_5T7V_027 ➜	1/A/1526:1531	NA	NA
26	HL_5T7V_028 ➜	1/B/57:70	NA	NA
27	HL_5T7V_029 ➜	1/B/87:95	NA	NA
28	HL_5T7V_030 ➜	1/B/122:127	NA	NA
29	HL_5T7V_031 ➜	1/B/136:143	NA	NA
30	HL_5T7V_032 ➜	1/B/158:170	NA	NA
31	HL_5T7V_033 ➜	1/B/190:212	NA	NA
32	HL_5T7V_034 ➜	1/B/228:233	NA	NA
33	HL_5T7V_035 ➜	1/B/249:255	NA	NA
34	HL_5T7V_036 ➜	1/B/280:291	NA	NA
35	HL_5T7V_037 ➜	1/B/346:357	NA	NA
36	HL_5T7V_038 ➜	1/B/362:366	NA	NA
37	HL_5T7V_039 ➜	1/B/370:378	NA	NA
38	HL_5T7V_040 ➜	1/B/426:440	NA	NA
39	HL_5T7V_041 ➜	1/B/456:463	NA	NA
40	HL_5T7V_042 ➜	1/B/508:513	NA	NA
41	HL_5T7V_043 ➜	1/B/533:538	NA	NA
42	HL_5T7V_044 ➜	1/B/586:595	NA	NA
43	HL_5T7V_045 ➜	1/B/607:620	NA	NA
44	HL_5T7V_046 ➜	1/B/655:661	NA	NA
45	HL_5T7V_047 ➜	1/B/674:679	NA	NA
46	HL_5T7V_048 ➜	1/B/686:692	NA	NA
47	HL_5T7V_049 ➜	1/B/757:764	NA	NA
48	HL_5T7V_050 ➜	1/B/789:798	NA	NA
49	HL_5T7V_051 ➜	1/B/824:830	NA	NA
50	HL_5T7V_052 ➜	1/B/871:876	NA	NA
51	HL_5T7V_053 ➜	1/B/999:1006	NA	NA
52	HL_5T7V_054 ➜	1/B/1022:1029	NA	NA
53	HL_5T7V_055 ➜	1/B/1136:1143	NA	NA
54	HL_5T7V_056 ➜	1/B/1213:1219	NA	NA
55	HL_5T7V_057 ➜	1/B/1260:1265	NA	NA
56	HL_5T7V_058 ➜	1/B/1317:1327	NA	NA
57	HL_5T7V_059 ➜	1/B/1361:1367	NA	NA
58	HL_5T7V_060 ➜	1/B/1400:1405	NA	NA
59	HL_5T7V_061 ➜	1/B/1426:1435	NA	NA
60	HL_5T7V_063 ➜	1/B/1612:1615	NA	NA
61	HL_5T7V_064 ➜	1/B/1656:1663	NA	NA
62	HL_5T7V_065 ➜	1/B/1673:1681	NA	NA
63	HL_5T7V_066 ➜	1/B/1735:1740	NA	NA
64	HL_5T7V_067 ➜	1/B/1761:1769	NA	NA
65	HL_5T7V_068 ➜	1/B/1779:1783	NA	NA
66	HL_5T7V_069 ➜	1/B/1804:1814	NA	NA
67	HL_5T7V_070 ➜	1/B/1833:1838	NA	NA
68	HL_5T7V_071 ➜	1/B/1895:1900	NA	NA
69	HL_5T7V_072 ➜	1/B/1937:1947	NA	NA
70	HL_5T7V_073 ➜	1/B/1976:1984	NA	NA
71	HL_5T7V_074 ➜	1/B/2054:2063	NA	NA
72	HL_5T7V_076 ➜	1/B/2236:2242	NA	NA
73	HL_5T7V_077 ➜	1/B/2275:2283	NA	NA
74	HL_5T7V_078 ➜	1/B/2291:2303	NA	NA
75	HL_5T7V_079 ➜	1/B/2329:2341	NA	NA
76	HL_5T7V_080 ➜	1/B/2350:2359	NA	NA
77	HL_5T7V_081 ➜	1/B/2382:2389	NA	NA
78	HL_5T7V_082 ➜	1/B/2401:2406	NA	NA
79	HL_5T7V_083 ➜	1/B/2431:2440	NA	NA
80	HL_5T7V_084 ➜	1/B/2497:2507	NA	NA
81	HL_5T7V_085 ➜	1/B/2555:2562	NA	NA
82	HL_5T7V_086 ➜	1/B/2578:2584	NA	NA
83	HL_5T7V_087 ➜	1/B/2621:2626	NA	NA
84	HL_5T7V_088 ➜	1/B/2685:2690	NA	NA
85	HL_5T7V_089 ➜	1/B/2728:2733	NA	NA
86	HL_5T7V_090 ➜	1/B/2772:2786	NA	NA
87	HL_5T7V_091 ➜	1/B/2838:2848	NA	NA
88	HL_5T7V_092 ➜	1/B/2876:2881	NA	NA
89	HL_5T7V_093 ➜	1/C/36:42	NA	NA
90	HL_5T7V_094 ➜	1/C/77:94	NA	NA
91	HL_5T7V_095 ➜	1/D/13:22	NA	NA
92	HL_5T7V_096 ➜	1/D/28:42	NA	NA
93	HL_5T7V_097 ➜	1/D/52:62	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_5T7V_002 ➜	missing nts	NA
2	HL_5T7V_022 ➜	missing nts	NA
3	HL_5T7V_062 ➜	missing nts	NA
4	HL_5T7V_075 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_5T7V_001 ➜	1/A/31:33,1/A/560:561	NA	NA
2	IL_5T7V_002 ➜	1/A/48:58,1/A/363:369	NA	NA
3	IL_5T7V_004 ➜	1/A/207:211,1/A/224:227	NA	NA
4	IL_5T7V_005 ➜	1/A/250:255,1/A/285:292	NA	NA
5	IL_5T7V_006 ➜	1/A/256:261,1/A/281:284	NA	NA
6	IL_5T7V_007 ➜	1/A/299:302,1/A/311:317	NA	NA
7	IL_5T7V_008 ➜	1/A/327:330,1/A/340:342	NA	NA
8	IL_5T7V_009 ➜	1/A/383:386,1/A/394:397	NA	NA
9	IL_5T7V_010 ➜	1/A/414:424,1/A/435:444	NA	NA
10	IL_5T7V_011 ➜	1/A/512:519,1/A/548:549	NA	NA
11	IL_5T7V_012 ➜	1/A/519:530,1/A/535:548	NA	NA
12	IL_5T7V_013 ➜	1/A/577:583,1/A/889:890	NA	NA
13	IL_5T7V_014 ➜	1/A/587:592,1/A/765:770	NA	NA
14	IL_5T7V_015 ➜	1/A/602:605,1/A/651:653	NA	NA
15	IL_5T7V_016 ➜	1/A/605:607,1/A/647:651	NA	NA
16	IL_5T7V_017 ➜	1/A/612:621,1/A/635:642	NA	NA
17	IL_5T7V_018 ➜	1/A/662:665,1/A/757:762	NA	NA
18	IL_5T7V_019 ➜	1/A/665:667,1/A/754:757	NA	NA
19	IL_5T7V_020 ➜	1/A/669:674,1/A/748:752	NA	NA
20	IL_5T7V_021 ➜	1/A/681:686,1/A/720:725	NA	NA
21	IL_5T7V_022 ➜	1/A/692:697,1/A/706:714	NA	NA
22	IL_5T7V_023 ➜	1/A/782:787,1/A/811:813	NA	NA
23	IL_5T7V_024 ➜	1/A/787:791,1/A/807:811	NA	NA
24	IL_5T7V_025 ➜	1/A/896:903,1/A/914:919	NA	NA
25	IL_5T7V_026 ➜	1/A/934:936,1/A/1400:1401	NA	NA
26	IL_5T7V_027 ➜	1/A/940:945,1/A/1389:1396	NA	NA
27	IL_5T7V_028 ➜	1/A/945:948,1/A/1354:1389	NA	NA
28	IL_5T7V_029 ➜	1/A/949:951,1/A/1352:1353	NA	NA
29	IL_5T7V_030 ➜	1/A/961:964,1/A/1235:1239	NA	NA
30	IL_5T7V_031 ➜	1/A/1069:1074,1/A/1203:1209	NA	NA
31	IL_5T7V_032 ➜	1/A/1251:1256,1/A/1302:1306	NA	NA
32	IL_5T7V_033 ➜	1/A/1263:1268,1/A/1287:1294	NA	NA
33	IL_5T7V_034 ➜	1/A/1414:1419,1/A/1502:1508	NA	NA
34	IL_5T7V_035 ➜	1/A/1422:1424,1/A/1497:1499	NA	NA
35	IL_5T7V_036 ➜	1/A/1425:1430,1/A/1491:1496	NA	NA
36	IL_5T7V_037 ➜	1/A/1433:1437,1/A/1484:1488	NA	NA
37	IL_5T7V_038 ➜	1/A/1440:1445,1/A/1477:1481	NA	NA
38	IL_5T7V_039 ➜	1/A/1445:1448,1/A/1474:1477	NA	NA
39	IL_5T7V_040 ➜	1/A/1449:1454,1/A/1469:1473	NA	NA
40	IL_5T7V_041 ➜	1/A/1455:1459,1/A/1465:1468	NA	NA
41	IL_5T7V_042 ➜	1/B/24:30,1/B/555:561	NA	NA
42	IL_5T7V_043 ➜	1/B/36:37,1/B/488:490	NA	NA
43	IL_5T7V_044 ➜	1/B/42:44,1/B/480:483	NA	NA
44	IL_5T7V_045 ➜	1/B/81:85,1/B/97:104	NA	NA
45	IL_5T7V_046 ➜	1/B/152:154,1/B/174:177	NA	NA
46	IL_5T7V_047 ➜	1/B/186:187,1/B/215:217	NA	NA
47	IL_5T7V_048 ➜	1/B/241:248,1/B/256:262	NA	NA
48	IL_5T7V_049 ➜	1/B/304:307,1/B/408:413	NA	NA
49	IL_5T7V_050 ➜	1/B/336:339,1/B/385:390	NA	NA
50	IL_5T7V_051 ➜	1/B/527:530,1/B/541:554	NA	NA
51	IL_5T7V_052 ➜	1/B/581:584,1/B/597:600	NA	NA
52	IL_5T7V_053 ➜	1/B/635:640,1/B/705:710	NA	NA
53	IL_5T7V_054 ➜	1/B/649:653,1/B/663:667	NA	NA
54	IL_5T7V_055 ➜	1/B/717:719,1/B/851:853	NA	NA
55	IL_5T7V_056 ➜	1/B/719:723,1/B/844:851	NA	NA
56	IL_5T7V_057 ➜	1/B/742:743,1/B/808:810	NA	NA
57	IL_5T7V_058 ➜	1/B/747:752,1/B/769:775	NA	NA
58	IL_5T7V_059 ➜	1/B/783:785,1/B/802:803	NA	NA
59	IL_5T7V_060 ➜	1/B/820:822,1/B/832:836	NA	NA
60	IL_5T7V_061 ➜	1/B/882:883,1/B/984:986	NA	NA
61	IL_5T7V_062 ➜	1/B/886:893,1/B/975:981	NA	NA
62	IL_5T7V_063 ➜	1/B/897:899,1/B/968:971	NA	NA
63	IL_5T7V_064 ➜	1/B/901:907,1/B/960:966	NA	NA
64	IL_5T7V_065 ➜	1/B/907:909,1/B/957:960	NA	NA
65	IL_5T7V_066 ➜	1/B/909:913,1/B/954:957	NA	NA
66	IL_5T7V_067 ➜	1/B/915:917,1/B/950:952	NA	NA
67	IL_5T7V_068 ➜	1/B/1038:1040,1/B/1203:1204	NA	NA
68	IL_5T7V_069 ➜	1/B/1042:1046,1/B/1197:1201	NA	NA
69	IL_5T7V_070 ➜	1/B/1047:1059,1/B/1191:1196	NA	NA
70	IL_5T7V_071 ➜	1/B/1062:1068,1/B/1184:1188	NA	NA
71	IL_5T7V_072 ➜	1/B/1068:1074,1/B/1168:1184	NA	NA
72	IL_5T7V_073 ➜	1/B/1074:1078,1/B/1165:1168	NA	NA
73	IL_5T7V_074 ➜	1/B/1081:1084,1/B/1159:1162	NA	NA
74	IL_5T7V_075 ➜	1/B/1085:1096,1/B/1151:1158	NA	NA
75	IL_5T7V_077 ➜	1/B/1235:1238,1/B/1284:1288	NA	NA
76	IL_5T7V_078 ➜	1/B/1243:1245,1/B/1277:1279	NA	NA
77	IL_5T7V_079 ➜	1/B/1246:1253,1/B/1272:1276	NA	NA
78	IL_5T7V_080 ➜	1/B/1257:1259,1/B/1266:1268	NA	NA
79	IL_5T7V_081 ➜	1/B/1300:1307,1/B/2038:2044	NA	NA
80	IL_5T7V_082 ➜	1/B/1356:1360,1/B/1368:1370	NA	NA
81	IL_5T7V_083 ➜	1/B/1388:1392,1/B/1413:1417	NA	NA
82	IL_5T7V_084 ➜	1/B/1393:1398,1/B/1407:1412	NA	NA
83	IL_5T7V_085 ➜	1/B/1447:1452,1/B/1631:1636	NA	NA
84	IL_5T7V_087 ➜	1/B/1461:1465,1/B/1624:1627	NA	NA
85	IL_5T7V_088 ➜	1/B/1474:1480,1/B/1604:1610	NA	NA
86	IL_5T7V_089 ➜	1/B/1480:1485,1/B/1598:1604	NA	NA
87	IL_5T7V_090 ➜	1/B/1485:1510,1/B/1571:1598	NA	NA
88	IL_5T7V_091 ➜	1/B/1511:1516,1/B/1564:1570	NA	NA
89	IL_5T7V_092 ➜	1/B/1516:1523,1/B/1557:1564	NA	NA
90	IL_5T7V_094 ➜	1/B/1695:1700,1/B/2031:2033	NA	NA
91	IL_5T7V_095 ➜	1/B/1707:1709,1/B/2022:2024	NA	NA
92	IL_5T7V_096 ➜	1/B/1710:1713,1/B/2020:2021	NA	NA
93	IL_5T7V_097 ➜	1/B/1713:1718,1/B/2017:2020	NA	NA
94	IL_5T7V_098 ➜	1/B/1730:1735,1/B/1740:1746	NA	NA
95	IL_5T7V_099 ➜	1/B/1754:1756,1/B/1774:1775	NA	NA
96	IL_5T7V_100 ➜	1/B/1756:1761,1/B/1769:1774	NA	NA
97	IL_5T7V_101 ➜	1/B/1797:1798,1/B/2007:2009	NA	NA
98	IL_5T7V_102 ➜	1/B/1825:1831,1/B/1840:1848	NA	NA
99	IL_5T7V_103 ➜	1/B/1863:1867,1/B/1929:1931	NA	NA
100	IL_5T7V_104 ➜	1/B/1868:1869,1/B/1925:1928	NA	NA
101	IL_5T7V_105 ➜	1/B/1873:1876,1/B/1920:1921	NA	NA
102	IL_5T7V_106 ➜	1/B/1877:1882,1/B/1914:1919	NA	NA
103	IL_5T7V_107 ➜	1/B/1883:1887,1/B/1909:1913	NA	NA
104	IL_5T7V_108 ➜	1/B/1890:1895,1/B/1900:1906	NA	NA
105	IL_5T7V_109 ➜	1/B/1960:1961,1/B/1991:1994	NA	NA
106	IL_5T7V_110 ➜	1/B/1961:1972,1/B/1988:1991	NA	NA
107	IL_5T7V_111 ➜	1/B/2077:2079,1/B/2644:2645	NA	NA
108	IL_5T7V_112 ➜	1/B/2081:2083,1/B/2639:2642	NA	NA
109	IL_5T7V_113 ➜	1/B/2094:2096,1/B/2469:2470	NA	NA
110	IL_5T7V_114 ➜	1/B/2097:2098,1/B/2465:2468	NA	NA
111	IL_5T7V_115 ➜	1/B/2108:2110,1/B/2263:2266	NA	NA
112	IL_5T7V_116 ➜	1/B/2121:2126,1/B/2217:2222	NA	NA
113	IL_5T7V_117 ➜	1/B/2229:2231,1/B/2247:2248	NA	NA
114	IL_5T7V_118 ➜	1/B/2324:2326,1/B/2344:2348	NA	NA
115	IL_5T7V_119 ➜	1/B/2377:2380,1/B/2391:2394	NA	NA
116	IL_5T7V_120 ➜	1/B/2428:2430,1/B/2441:2442	NA	NA
117	IL_5T7V_121 ➜	1/B/2480:2481,1/B/2525:2527	NA	NA
118	IL_5T7V_122 ➜	1/B/2481:2482,1/B/2523:2525	NA	NA
119	IL_5T7V_123 ➜	1/B/2483:2488,1/B/2516:2522	NA	NA
120	IL_5T7V_124 ➜	1/B/2493:2497,1/B/2507:2511	NA	NA
121	IL_5T7V_125 ➜	1/B/2534:2535,1/B/2607:2609	NA	NA
122	IL_5T7V_126 ➜	1/B/2537:2539,1/B/2601:2605	NA	NA
123	IL_5T7V_127 ➜	1/B/2539:2540,1/B/2598:2601	NA	NA
124	IL_5T7V_128 ➜	1/B/2549:2550,1/B/2567:2570	NA	NA
125	IL_5T7V_129 ➜	1/B/2662:2667,1/B/2801:2810	NA	NA
126	IL_5T7V_130 ➜	1/B/2678:2685,1/B/2690:2696	NA	NA
127	IL_5T7V_131 ➜	1/B/2707:2713,1/B/2750:2754	NA	NA
128	IL_5T7V_132 ➜	1/B/2714:2718,1/B/2745:2749	NA	NA
129	IL_5T7V_133 ➜	1/B/2722:2725,1/B/2736:2741	NA	NA
130	IL_5T7V_134 ➜	1/B/2764:2770,1/B/2788:2794	NA	NA
131	IL_5T7V_135 ➜	1/B/2816:2831,1/B/2909:2913	NA	NA
132	IL_5T7V_136 ➜	1/B/2858:2861,1/B/2896:2900	NA	NA
133	IL_5T7V_137 ➜	1/B/2863:2865,1/B/2891:2894	NA	NA
134	IL_5T7V_138 ➜	1/B/2867:2873,1/B/2884:2889	NA	NA
135	IL_5T7V_139 ➜	1/C/14:17,1/C/63:66	NA	NA
136	IL_5T7V_140 ➜	1/C/17:19,1/C/60:63	NA	NA
137	IL_5T7V_141 ➜	1/C/20:27,1/C/53:59	NA	NA
138	IL_5T7V_142 ➜	1/C/28:36,1/C/42:52	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_5T7V_003 ➜	missing nts	NA
2	IL_5T7V_076 ➜	missing nts	NA
3	IL_5T7V_086 ➜	missing nts	NA
4	IL_5T7V_093 ➜	incomplete nts	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_5T7V_002 ➜	1/A/594:599,1/A/656:662,1/A/762:763	NA	NA
2	J3_5T7V_003 ➜	1/A/680:681,1/A/725:733,1/A/740:742	NA	NA
3	J3_5T7V_004 ➜	1/A/834:837,1/A/866:870,1/A/877:883	NA	NA
4	J3_5T7V_005 ➜	1/A/964:971,1/A/982:993,1/A/1231:1235	NA	NA
5	J3_5T7V_006 ➜	1/A/1083:1085,1/A/1094:1098,1/A/1109:1114	NA	NA
6	J3_5T7V_007 ➜	1/B/30:31,1/B/520:527,1/B/554:555	NA	NA
7	J3_5T7V_008 ➜	1/B/55:57,1/B/70:76,1/B/109:114	NA	NA
8	J3_5T7V_009 ➜	1/B/300:302,1/B/415:421,1/B/445:450	NA	NA
9	J3_5T7V_010 ➜	1/B/727:734,1/B/818:820,1/B/836:840	NA	NA
10	J3_5T7V_011 ➜	1/B/743:745,1/B/777:781,1/B/805:808	NA	NA
11	J3_5T7V_012 ➜	1/B/1335:1340,1/B/1669:1671,1/B/1683:1686	NA	NA
12	J3_5T7V_013 ➜	1/B/1342:1346,1/B/1649:1655,1/B/1664:1667	NA	NA
13	J3_5T7V_014 ➜	1/B/2117:2120,1/B/2223:2228,1/B/2249:2256	NA	NA
14	J3_5T7V_015 ➜	1/B/2322:2324,1/B/2348:2350,1/B/2359:2364	NA	NA
15	J3_5T7V_016 ➜	1/B/2544:2547,1/B/2572:2574,1/B/2588:2594	NA	NA
16	J3_5T7V_017 ➜	1/B/2833:2835,1/B/2851:2856,1/B/2902:2907	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	J3_5T7V_001 ➜	incomplete nts	NA

Coloring options: Nucleotide numbers

5T7V Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops