6D9J Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6D9J_001 | 1/2/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_6D9J_002 | 1/2/69:80 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_6D9J_003 | 1/2/156:162 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_6D9J_004 | 1/2/196:203 | No text annotation Not in a motif group | geometric HL_4WF9_004 HL_84085.2 | |
| HL_6D9J_005 | 1/2/288:295 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_6D9J_006 | 1/2/321:330 | No text annotation Not in a motif group | ||
| HL_6D9J_007 | 1/2/377:387 | No text annotation Not in a motif group | geometric HL_6UFM_001 HL_09136.1 | |
| HL_6D9J_008 | 1/2/416:421 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_6D9J_009 | 1/2/441:452 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6D9J_010 | 1/2/462:467 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_6D9J_011 | 1/2/498:504 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_6D9J_012 | 1/2/539:544 | No text annotation Not in a motif group | geometric HL_6WPI_001 HL_42097.1 | |
| HL_6D9J_013 | 1/2/569:581 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_6D9J_014 | 1/2/618:623 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_6D9J_015 | 1/2/696:730 | No text annotation Not in a motif group | ||
| HL_6D9J_016 | 1/2/819:829 | No text annotation Not in a motif group | ||
| HL_6D9J_017 | 1/2/832:842 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_6D9J_018 | 1/2/885:901 | No text annotation Not in a motif group | ||
| HL_6D9J_019 | 1/2/957:966 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_6D9J_020 | 1/2/994:999 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6D9J_021 | 1/2/1054:1064 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_6D9J_022 | 1/2/1114:1119 | No text annotation Not in a motif group | ||
| HL_6D9J_023 | 1/2/1142:1146 | No text annotation Not in a motif group | ||
| HL_6D9J_024 | 1/2/1178:1183 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_6D9J_025 | 1/2/1245:1254 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_6D9J_026 | 1/2/1295:1304 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_6D9J_027 | 1/2/1353:1359 | No text annotation Not in a motif group | ||
| HL_6D9J_028 | 1/2/1366:1373 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_6D9J_029 | 1/2/1416:1424 | No text annotation Not in a motif group | ||
| HL_6D9J_030 | 1/2/1460:1466 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.1 | |
| HL_6D9J_031 | 1/2/1565:1570 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_6D9J_032 | 1/2/1614:1625 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_6D9J_033 | 1/2/1658:1666 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_6D9J_034 | 1/2/1760:1772 | No text annotation Not in a motif group | ||
| HL_6D9J_035 | 1/2/1846:1853 | No text annotation Not in a motif group | geometric HL_2Y9H_005 HL_47100.1 | |
| HL_6D9J_036 | 1/3/12:24 | No text annotation Not in a motif group | homologous HL_1QTQ_001 HL_86332.1 | |
| HL_6D9J_037 | 1/3/32:40 | tRNA anticodon loop Not in a motif group | homologous HL_6ORD_036 HL_53597.2 | |
| HL_6D9J_038 | 1/3/49:55 | No text annotation Not in a motif group | ||
| HL_6D9J_039 | 1/3/64:72 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V90_034 HL_22280.1 | |
| HL_6D9J_040 | 1/4/6050:6077 | No text annotation Not in a motif group | ||
| HL_6D9J_041 | 1/4/6110:6115 | No text annotation Not in a motif group | ||
| HL_6D9J_042 | 1/4/6141:6147 | No text annotation Not in a motif group | ||
| HL_6D9J_043 | 1/4/6178:6198 | No text annotation Not in a motif group | ||
| HL_6D9J_044 | 1/5/37:44 | No text annotation Not in a motif group | geometric HL_5TBW_001 HL_06192.2 | |
| HL_6D9J_045 | 1/5/68:73 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_6D9J_046 | 1/5/89:95 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.7 | |
| HL_6D9J_047 | 1/5/131:137 | No text annotation Not in a motif group | ||
| HL_6D9J_048 | 1/5/204:211 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_6D9J_049 | 1/5/222:226 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_6D9J_050 | 1/5/230:238 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.8 | |
| HL_6D9J_051 | 1/5/289:298 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
| HL_6D9J_052 | 1/5/313:324 | No text annotation Not in a motif group | ||
| HL_6D9J_053 | 1/5/368:373 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.1 | |
| HL_6D9J_054 | 1/5/393:398 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_42097.1 | |
| HL_6D9J_055 | 1/5/759:904 | No text annotation Not in a motif group | ||
| HL_6D9J_056 | 1/5/962:970 | No text annotation Not in a motif group | ||
| HL_6D9J_057 | 1/5/1178:1183 | No text annotation Not in a motif group | ||
| HL_6D9J_058 | 1/5/1317:1326 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_89380.2 | |
| HL_6D9J_059 | 1/5/1364:1373 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_6D9J_060 | 1/5/1389:1394 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_6D9J_061 | 1/5/1404:1413 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_56691.2 | |
| HL_6D9J_062 | 1/5/1436:1448 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_6D9J_063 | 1/5/1479:1486 | No text annotation Not in a motif group | ||
| HL_6D9J_064 | 1/5/1561:1566 | No text annotation Not in a motif group | homologous HL_8C3A_019 HL_42097.1 | |
| HL_6D9J_065 | 1/5/1593:1602 | No text annotation Not in a motif group | homologous HL_8C3A_020 HL_39334.6 | |
| HL_6D9J_066 | 1/5/1627:1635 | No text annotation Not in a motif group | geometric HL_5TBW_021 HL_33817.1 | |
| HL_6D9J_067 | 1/5/1675:1680 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_6D9J_068 | 1/5/1763:1769 | GNRA Not in a motif group | geometric HL_5TBW_023 HL_42097.1 | |
| HL_6D9J_069 | 1/5/1816:1823 | No text annotation Not in a motif group | ||
| HL_6D9J_070 | 1/5/1864:1870 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.1 | |
| HL_6D9J_071 | 1/5/1886:1893 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_6D9J_072 | 1/5/1978:1988 | No text annotation Not in a motif group | homologous HL_8C3A_027 HL_07145.1 | |
| HL_6D9J_073 | 1/5/2006:2013 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_6D9J_074 | 1/5/2087:2270 | No text annotation Not in a motif group | ||
| HL_6D9J_075 | 1/5/2317:2322 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_6D9J_076 | 1/5/2376:2384 | No text annotation Not in a motif group | homologous HL_8C3A_031 HL_89380.2 | |
| HL_6D9J_077 | 1/5/2420:2426 | No text annotation Not in a motif group | homologous HL_8C3A_032 HL_46680.1 | |
| HL_6D9J_078 | 1/5/2458:2463 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_76539.2 | |
| HL_6D9J_079 | 1/5/2487:2491 | No text annotation Not in a motif group | ||
| HL_6D9J_080 | 1/5/2523:2532 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.2 | |
| HL_6D9J_081 | 1/5/2561:2566 | GNRA Not in a motif group | geometric HL_5FQ5_003 HL_42097.1 | |
| HL_6D9J_082 | 1/5/2578:2583 | No text annotation Not in a motif group | homologous HL_8C3A_036 HL_42097.1 | |
| HL_6D9J_083 | 1/5/2624:2632 | No text annotation Not in a motif group | homologous HL_8C3A_037 HL_60812.1 | |
| HL_6D9J_084 | 1/5/2664:2671 | No text annotation Not in a motif group | ||
| HL_6D9J_085 | 1/5/2705:2710 | No text annotation Not in a motif group | geometric HL_4V9F_011 HL_75407.1 | |
| HL_6D9J_086 | 1/5/2792:2799 | No text annotation Not in a motif group | homologous HL_8C3A_041 HL_64430.2 | |
| HL_6D9J_087 | 1/5/2810:2816 | No text annotation Not in a motif group | homologous HL_8C3A_042 HL_42097.1 | |
| HL_6D9J_088 | 1/5/2867:2883 | No text annotation Not in a motif group | ||
| HL_6D9J_089 | 1/5/2901:3598 | No text annotation Not in a motif group | ||
| HL_6D9J_090 | 1/5/3639:3649 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.5 | |
| HL_6D9J_091 | 1/5/3668:3674 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.1 | |
| HL_6D9J_092 | 1/5/3724:3729 | Other HL Not in a motif group | homologous HL_5TBW_048 HL_42097.1 | |
| HL_6D9J_093 | 1/5/3757:3767 | No text annotation Not in a motif group | homologous HL_8C3A_049 HL_71924.2 | |
| HL_6D9J_094 | 1/5/3796:3804 | No text annotation Not in a motif group | homologous HL_8C3A_050 HL_51824.1 | |
| HL_6D9J_095 | 1/5/3873:3882 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.6 | |
| HL_6D9J_096 | 1/5/4193:4201 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.2 | |
| HL_6D9J_097 | 1/5/4210:4222 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.6 | |
| HL_6D9J_098 | 1/5/4250:4258 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_6D9J_099 | 1/5/4270:4277 | No text annotation Not in a motif group | homologous HL_8C3A_058 HL_12078.2 | |
| HL_6D9J_100 | 1/5/4301:4309 | No text annotation Not in a motif group | homologous HL_5TBW_058 HL_92229.2 | |
| HL_6D9J_101 | 1/5/4320:4327 | No text annotation Not in a motif group | ||
| HL_6D9J_102 | 1/5/4352:4362 | No text annotation Not in a motif group | geometric HL_4V83_139 HL_53597.2 | |
| HL_6D9J_103 | 1/5/4417:4425 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_6D9J_104 | 1/5/4472:4483 | No text annotation Not in a motif group | ||
| HL_6D9J_105 | 1/5/4497:4503 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_43656.2 | |
| HL_6D9J_106 | 1/5/4540:4545 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_42097.1 | |
| HL_6D9J_107 | 1/5/4603:4608 | GNRA Not in a motif group | homologous HL_5TBW_065 HL_42097.1 | |
| HL_6D9J_108 | 1/5/4646:4651 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_6D9J_109 | 1/5/4688:4702 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_6D9J_110 | 1/5/4775:4860 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_6D9J_111 | 1/5/4906:4915 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_6D9J_112 | 1/5/4975:4983 | No text annotation Not in a motif group | homologous HL_8C3A_071 HL_27930.1 | |
| HL_6D9J_113 | 1/5/5021:5028 | No text annotation Not in a motif group | homologous HL_5TBW_071 HL_53837.1 | |
| HL_6D9J_114 | 1/7/36:41 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_87939.1 | |
| HL_6D9J_115 | 1/7/86:91 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_6D9J_116 | 1/8/47:56 | No text annotation Not in a motif group | geometric HL_7RQB_001 HL_99167.1 | |
| HL_6D9J_117 | 1/8/67:91 | No text annotation Not in a motif group | ||
| HL_6D9J_118 | 1/8/107:112 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_6D9J_119 | 1/8/121:129 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6D9J_001 | 1/2/23:25, 1/2/649:651 | No text annotation Not in a motif group | geometric IL_4M4O_001 IL_95997.1 | |
| IL_6D9J_002 | 1/2/34:36, 1/2/519:521 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_6D9J_003 | 1/2/37:40, 1/2/514:518 | No text annotation Not in a motif group | ||
| IL_6D9J_004 | 1/2/41:47, 1/2/479:481 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_6D9J_005 | 1/2/49:51, 1/2/476:477 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_6D9J_006 | 1/2/56:62, 1/2/86:89 | Other IL Not in a motif group | geometric IL_5TBW_043 IL_71110.1 | |
| IL_6D9J_007 | 1/2/63:68, 1/2/81:85 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_6D9J_008 | 1/2/108:112, 1/2/349:353 | No text annotation Not in a motif group | geometric IL_4Z31_001 IL_61242.1 | |
| IL_6D9J_009 | 1/2/112:115, 1/2/348:349 | Multiple bulged bases Not in a motif group | geometric IL_5WLH_001 IL_44546.1 | |
| IL_6D9J_010 | 1/2/116:121, 1/2/343:347 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_6D9J_011 | 1/2/130:144, 1/2/175:182 | No text annotation Not in a motif group | ||
| IL_6D9J_012 | 1/2/145:151, 1/2/167:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_6D9J_013 | 1/2/152:155, 1/2/163:166 | Other IL Not in a motif group | geometric IL_5J7L_327 IL_21270.1 | |
| IL_6D9J_014 | 1/2/188:193, 1/2/207:211 | No text annotation Not in a motif group | ||
| IL_6D9J_015 | 1/2/193:194, 1/2/205:207 | Single stack bend Not in a motif group | geometric IL_4WF9_007 IL_76488.2 | |
| IL_6D9J_016 | 1/2/216:219, 1/2/302:309 | No text annotation Not in a motif group | ||
| IL_6D9J_017 | 1/2/223:288, 1/2/295:298 | No text annotation Not in a motif group | ||
| IL_6D9J_018 | 1/2/312:314, 1/2/336:337 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_6D9J_019 | 1/2/315:319, 1/2/332:335 | No text annotation Not in a motif group | ||
| IL_6D9J_020 | 1/2/359:364, 1/2/396:403 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6D9J_021 | 1/2/366:371, 1/2/393:394 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_6D9J_022 | 1/2/411:413, 1/2/424:429 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_6D9J_023 | 1/2/437:439, 1/2/454:456 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_6D9J_024 | 1/2/487:489, 1/2/511:512 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_6D9J_025 | 1/2/491:495, 1/2/508:509 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6D9J_026 | 1/2/495:496, 1/2/506:508 | Single bulged G Not in a motif group | geometric IL_4LFB_016 IL_00225.2 | |
| IL_6D9J_027 | 1/2/529:531, 1/2/553:556 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_6D9J_028 | 1/2/534:537, 1/2/546:550 | No text annotation Not in a motif group | ||
| IL_6D9J_029 | 1/2/563:565, 1/2/585:592 | No text annotation Not in a motif group | homologous IL_8C3A_420 IL_55023.1 | |
| IL_6D9J_030 | 1/2/566:569, 1/2/581:584 | Double sheared Not in a motif group | geometric IL_5AOX_003 IL_09705.9 | |
| IL_6D9J_031 | 1/2/599:608, 1/2/635:637 | UU cWW Not in a motif group | geometric IL_4ZC7_004 IL_95997.1 | |
| IL_6D9J_032 | 1/2/611:617, 1/2/624:632 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_6D9J_033 | 1/2/665:671, 1/2/1161:1162 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_6D9J_034 | 1/2/673:675, 1/2/1030:1032 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6D9J_035 | 1/2/676:680, 1/2/1025:1029 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_6D9J_036 | 1/2/692:696, 1/2/730:734 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_6D9J_037 | 1/2/745:749, 1/2/794:796 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_76488.2 | |
| IL_6D9J_038 | 1/2/752:754, 1/2/790:791 | No text annotation Not in a motif group | ||
| IL_6D9J_039 | 1/2/802:803, 1/2/860:863 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_6D9J_040 | 1/2/805:807, 1/2/856:858 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_6D9J_041 | 1/2/807:815, 1/2/849:856 | No text annotation Not in a motif group | geometric IL_4V88_425 IL_69091.1 | |
| IL_6D9J_042 | 1/2/874:876, 1/2/910:912 | No text annotation Not in a motif group | geometric IL_5MWI_007 IL_95997.1 | |
| IL_6D9J_043 | 1/2/877:879, 1/2/907:909 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_6D9J_044 | 1/2/922:923, 1/2/1019:1022 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.2 | |
| IL_6D9J_045 | 1/2/924:927, 1/2/1014:1018 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_30621.2 | |
| IL_6D9J_046 | 1/2/927:931, 1/2/1010:1014 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_6D9J_047 | 1/2/931:935, 1/2/1007:1010 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.2 | |
| IL_6D9J_048 | 1/2/942:945, 1/2/981:984 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_6D9J_049 | 1/2/951:956, 1/2/967:975 | Kink-turn Not in a motif group | geometric IL_4LFB_031 IL_37722.1 | |
| IL_6D9J_050 | 1/2/1042:1047, 1/2/1071:1073 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_6D9J_051 | 1/2/1047:1051, 1/2/1067:1071 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_436 IL_17136.1 | |
| IL_6D9J_052 | 1/2/1091:1093, 1/2/1152:1158 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6D9J_053 | 1/2/1098:1103, 1/2/1129:1134 | No text annotation Not in a motif group | ||
| IL_6D9J_054 | 1/2/1108:1110, 1/2/1123:1124 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_93353.1 | |
| IL_6D9J_055 | 1/2/1206:1208, 1/2/1691:1692 | No text annotation Not in a motif group | ||
| IL_6D9J_056 | 1/2/1214:1217, 1/2/1681:1685 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_6D9J_057 | 1/2/1230:1232, 1/2/1526:1528 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_6D9J_058 | 1/2/1235:1236, 1/2/1521:1523 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_6D9J_059 | 1/2/1281:1287, 1/2/1314:1316 | No text annotation Not in a motif group | ||
| IL_6D9J_060 | 1/2/1287:1290, 1/2/1309:1314 | No text annotation Not in a motif group | ||
| IL_6D9J_061 | 1/2/1291:1294, 1/2/1305:1308 | No text annotation Not in a motif group | ||
| IL_6D9J_062 | 1/2/1325:1327, 1/2/1502:1503 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_6D9J_063 | 1/2/1329:1333, 1/2/1498:1500 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
| IL_6D9J_064 | 1/2/1333:1335, 1/2/1492:1498 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_6D9J_065 | 1/2/1337:1338, 1/2/1488:1490 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_6D9J_066 | 1/2/1347:1349, 1/2/1380:1382 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_6D9J_067 | 1/2/1351:1353, 1/2/1359:1360 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_6D9J_068 | 1/2/1363:1365, 1/2/1374:1375 | Minor groove platform Not in a motif group | geometric IL_6DTD_003 IL_42622.2 | |
| IL_6D9J_069 | 1/2/1395:1399, 1/2/1447:1450 | No text annotation Not in a motif group | ||
| IL_6D9J_070 | 1/2/1399:1402, 1/2/1444:1447 | Self complementary Not in a motif group | geometric IL_3NDB_001 IL_30621.2 | |
| IL_6D9J_071 | 1/2/1402:1405, 1/2/1441:1444 | Minor groove platform Not in a motif group | homologous IL_4V88_456 IL_76458.1 | |
| IL_6D9J_072 | 1/2/1412:1413, 1/2/1427:1429 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6D9J_073 | 1/2/1537:1539, 1/2/1594:1596 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_51629.2 | |
| IL_6D9J_074 | 1/2/1550:1559, 1/2/1576:1582 | No text annotation Not in a motif group | ||
| IL_6D9J_075 | 1/2/1559:1563, 1/2/1572:1576 | No text annotation Not in a motif group | ||
| IL_6D9J_076 | 1/2/1604:1610, 1/2/1629:1635 | No text annotation Not in a motif group | homologous IL_8C3A_469 IL_10092.1 | |
| IL_6D9J_077 | 1/2/1706:1708, 1/2/1826:1828 | No text annotation Not in a motif group | geometric IL_4LFB_010 IL_95997.1 | |
| IL_6D9J_078 | 1/2/1708:1711, 1/2/1822:1826 | No text annotation Not in a motif group | geometric IL_6AZ4_001 IL_69145.1 | |
| IL_6D9J_079 | 1/2/1714:1716, 1/2/1817:1819 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_6D9J_080 | 1/2/1717:1720, 1/2/1813:1816 | Double sheared Not in a motif group | homologous IL_4V88_468 IL_09705.9 | |
| IL_6D9J_081 | 1/2/1720:1722, 1/2/1812:1813 | Single bulged U Not in a motif group | geometric IL_4V88_469 IL_83039.13 | |
| IL_6D9J_082 | 1/2/1729:1731, 1/2/1803:1805 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_6D9J_083 | 1/2/1733:1736, 1/2/1798:1801 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_6D9J_084 | 1/2/1739:1741, 1/2/1793:1795 | CC cWW Not in a motif group | geometric IL_4E59_001 IL_95997.1 | |
| IL_6D9J_085 | 1/2/1742:1746, 1/2/1788:1792 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 | |
| IL_6D9J_086 | 1/2/1750:1751, 1/2/1782:1784 | No text annotation Not in a motif group | ||
| IL_6D9J_087 | 1/2/1751:1753, 1/2/1780:1782 | Stack and bulge Not in a motif group | geometric IL_2ET8_001 IL_82842.2 | |
| IL_6D9J_088 | 1/2/1753:1754, 1/2/1778:1780 | Single stack bend Not in a motif group | geometric IL_7A0S_005 IL_76488.2 | |
| IL_6D9J_089 | 1/3/47:49, 1/3/55:56 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_6D9J_090 | 1/4/6127:6129, 1/4/6157:6159 | No text annotation Not in a motif group | ||
| IL_6D9J_091 | 1/4/6132:6140, 1/4/6148:6154 | No text annotation Not in a motif group | ||
| IL_6D9J_092 | 1/5/5:7, 1/8/149:152 | No text annotation Not in a motif group | geometric IL_4KYY_002 IL_51629.2 | |
| IL_6D9J_093 | 1/5/8:14, 1/8/143:148 | No text annotation Not in a motif group | ||
| IL_6D9J_094 | 1/5/16:18, 1/8/139:141 | No text annotation Not in a motif group | geometric IL_7A0S_031 IL_95997.1 | |
| IL_6D9J_095 | 1/5/26:27, 1/5/55:57 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_6D9J_096 | 1/5/30:37, 1/5/44:52 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4WF9_008 IL_35728.2 | |
| IL_6D9J_097 | 1/5/82:88, 1/5/96:101 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_007 IL_76042.2 | |
| IL_6D9J_098 | 1/5/118:121, 1/5/152:153 | Multiple bulged bases Not in a motif group | geometric IL_6CZR_119 IL_16396.2 | |
| IL_6D9J_099 | 1/5/121:122, 1/5/147:152 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
| IL_6D9J_100 | 1/5/123:126, 1/5/142:146 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_168 IL_67743.1 | |
| IL_6D9J_101 | 1/5/128:130, 1/5/139:140 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_6D9J_102 | 1/5/130:131, 1/5/137:139 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6D9J_103 | 1/5/180:182, 1/5/255:256 | No text annotation Not in a motif group | ||
| IL_6D9J_104 | 1/5/182:189, 1/5/252:255 | No text annotation Not in a motif group | ||
| IL_6D9J_105 | 1/5/194:196, 1/5/244:247 | No text annotation Not in a motif group | geometric IL_5UNE_001 IL_53251.2 | |
| IL_6D9J_106 | 1/5/199:201, 1/5/214:215 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_6D9J_107 | 1/5/339:344, 1/8/30:33 | No text annotation Not in a motif group | ||
| IL_6D9J_108 | 1/5/348:350, 1/8/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.2 | |
| IL_6D9J_109 | 1/5/387:390, 1/5/401:414 | No text annotation Not in a motif group | homologous IL_8C3A_015 IL_60992.6 | |
| IL_6D9J_110 | 1/5/415:421, 1/8/13:19 | No text annotation Not in a motif group | homologous IL_8C3A_016 IL_66414.6 | |
| IL_6D9J_111 | 1/5/443:446, 1/5/1300:1304 | No text annotation Not in a motif group | ||
| IL_6D9J_112 | 1/5/448:451, 1/5/1296:1298 | No text annotation Not in a motif group | geometric IL_7A0S_092 IL_82842.2 | |
| IL_6D9J_113 | 1/5/459:460, 1/5/695:697 | Single bulged C Not in a motif group | geometric IL_1S03_006 IL_61258.12 | |
| IL_6D9J_114 | 1/5/461:464, 1/5/691:694 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3CUL_002 IL_30621.2 | |
| IL_6D9J_115 | 1/5/466:472, 1/5/682:689 | No text annotation Not in a motif group | ||
| IL_6D9J_116 | 1/5/480:486, 1/5/670:674 | No text annotation Not in a motif group | ||
| IL_6D9J_117 | 1/5/487:488, 1/5/665:669 | Multiple bulged bases Not in a motif group | geometric IL_1R3E_002 IL_59677.2 | |
| IL_6D9J_118 | 1/5/491:493, 1/5/661:662 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 | |
| IL_6D9J_119 | 1/5/496:499, 1/5/656:658 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_1U6B_001 IL_82068.2 | |
| IL_6D9J_120 | 1/5/508:510, 1/5/649:650 | Single bulged A Not in a motif group | geometric IL_7RQB_033 IL_37497.2 | |
| IL_6D9J_121 | 1/5/519:523, 1/5/638:642 | No text annotation Not in a motif group | ||
| IL_6D9J_122 | 1/5/709:710, 1/5/1286:1288 | Single bulged G Not in a motif group | geometric IL_4LFB_036 IL_00225.2 | |
| IL_6D9J_123 | 1/5/723:724, 1/5/942:945 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_59677.2 | |
| IL_6D9J_124 | 1/5/727:731, 1/5/938:939 | No text annotation Not in a motif group | ||
| IL_6D9J_125 | 1/5/732:737, 1/5/926:937 | No text annotation Not in a motif group | ||
| IL_6D9J_126 | 1/5/737:739, 1/5/923:926 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_6D9J_127 | 1/5/739:743, 1/5/921:923 | No text annotation Not in a motif group | ||
| IL_6D9J_128 | 1/5/744:753, 1/5/910:920 | No text annotation Not in a motif group | ||
| IL_6D9J_129 | 1/5/980:982, 1/5/1273:1275 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_6D9J_130 | 1/5/1077:1080, 1/5/1219:1233 | No text annotation Not in a motif group | ||
| IL_6D9J_131 | 1/5/1082:1084, 1/5/1213:1217 | Isolated cWS basepair Not in a motif group | geometric IL_4WF9_034 IL_52767.2 | |
| IL_6D9J_132 | 1/5/1086:1087, 1/5/1209:1211 | No text annotation Not in a motif group | ||
| IL_6D9J_133 | 1/5/1097:1098, 1/5/1197:1199 | Single stack bend Not in a motif group | geometric IL_4V9F_081 IL_76488.2 | |
| IL_6D9J_134 | 1/5/1100:1168, 1/5/1193:1195 | No text annotation Not in a motif group | ||
| IL_6D9J_135 | 1/5/1173:1177, 1/5/1184:1188 | No text annotation Not in a motif group | ||
| IL_6D9J_136 | 1/5/1357:1360, 1/5/1379:1382 | No text annotation Not in a motif group | ||
| IL_6D9J_137 | 1/5/1360:1361, 1/5/1376:1379 | Multiple bulged bases Not in a motif group | geometric IL_4LFB_007 IL_16396.2 | |
| IL_6D9J_138 | 1/5/1425:1429, 1/5/1455:1460 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_6D9J_139 | 1/5/1431:1434, 1/5/1450:1453 | Double sheared Not in a motif group | geometric IL_4LFB_060 IL_09705.9 | |
| IL_6D9J_140 | 1/5/1467:1468, 1/5/1496:1498 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_37497.2 | |
| IL_6D9J_141 | 1/5/1474:1476, 1/5/1489:1490 | Single stack bend Not in a motif group | geometric IL_7A0S_005 IL_76488.2 | |
| IL_6D9J_142 | 1/5/1520:1522, 1/5/1655:1657 | No text annotation Not in a motif group | geometric IL_4LFB_010 IL_95997.1 | |
| IL_6D9J_143 | 1/5/1522:1526, 1/5/1648:1655 | No text annotation Not in a motif group | homologous IL_8C3A_030 IL_17470.6 | |
| IL_6D9J_144 | 1/5/1550:1551, 1/5/1576:1578 | No text annotation Not in a motif group | ||
| IL_6D9J_145 | 1/5/1551:1555, 1/5/1572:1576 | No text annotation Not in a motif group | ||
| IL_6D9J_146 | 1/5/1586:1589, 1/5/1605:1607 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.2 | |
| IL_6D9J_147 | 1/5/1590:1592, 1/5/1603:1604 | Single bulged U Not in a motif group | homologous IL_5TBW_032 IL_83039.13 | |
| IL_6D9J_148 | 1/5/1624:1627, 1/5/1635:1640 | No text annotation Not in a motif group | ||
| IL_6D9J_149 | 1/5/1686:1688, 1/5/1848:1851 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5ML7_010 IL_82068.2 | |
| IL_6D9J_150 | 1/5/1694:1721, 1/5/1841:1842 | No text annotation Not in a motif group | ||
| IL_6D9J_151 | 1/5/1723:1725, 1/5/1838:1839 | Single bulged G Not in a motif group | homologous IL_5TBW_037 IL_00225.2 | |
| IL_6D9J_152 | 1/5/1732:1737, 1/5/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_6D9J_153 | 1/5/1737:1738, 1/5/1790:1792 | Minor groove platform Not in a motif group | geometric IL_7A0S_028 IL_42622.2 | |
| IL_6D9J_154 | 1/5/1738:1744, 1/5/1786:1790 | No text annotation Not in a motif group | ||
| IL_6D9J_155 | 1/5/1746:1749, 1/5/1781:1784 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.2 | |
| IL_6D9J_156 | 1/5/1749:1751, 1/5/1779:1781 | No text annotation Not in a motif group | homologous IL_8C3A_045 IL_95997.1 | |
| IL_6D9J_157 | 1/5/1752:1756, 1/5/1776:1778 | Major groove platform with extra pair Not in a motif group | geometric IL_5TBW_091 IL_63450.2 | |
| IL_6D9J_158 | 1/5/1758:1761, 1/5/1772:1774 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_6D9J_159 | 1/5/1761:1763, 1/5/1769:1772 | No text annotation Not in a motif group | ||
| IL_6D9J_160 | 1/5/1814:1816, 1/5/1823:1824 | No text annotation Not in a motif group | homologous IL_8C3A_048 IL_00225.2 | |
| IL_6D9J_161 | 1/5/1858:1860, 1/5/1874:1876 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_95997.1 | |
| IL_6D9J_162 | 1/5/1904:1909, 1/5/2067:2072 | UAA/GAN with extra cWW Not in a motif group | geometric IL_4WF9_104 IL_49767.5 | |
| IL_6D9J_163 | 1/5/1911:1920, 1/5/2063:2065 | No text annotation Not in a motif group | geometric IL_1NBS_006 IL_95997.1 | |
| IL_6D9J_164 | 1/5/1920:1922, 1/5/2062:2063 | No text annotation Not in a motif group | ||
| IL_6D9J_165 | 1/5/1926:1933, 1/5/2053:2058 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_27086.1 | |
| IL_6D9J_166 | 1/5/1933:1944, 1/5/2038:2053 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_6D9J_167 | 1/5/1944:1948, 1/5/2035:2038 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.2 | |
| IL_6D9J_168 | 1/5/1957:1965, 1/5/2022:2026 | No text annotation Not in a motif group | homologous IL_8C3A_057 IL_90538.4 | |
| IL_6D9J_169 | 1/5/1973:1977, 1/5/1989:1993 | No text annotation Not in a motif group | homologous IL_8C3A_058 IL_30542.3 | |
| IL_6D9J_170 | 1/5/2001:2005, 1/5/2014:2016 | No text annotation Not in a motif group | homologous IL_8C3A_059 IL_05564.2 | |
| IL_6D9J_171 | 1/5/2083:2085, 1/5/2272:2273 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.13 | |
| IL_6D9J_172 | 1/5/2290:2292, 1/5/2342:2345 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_6D9J_173 | 1/5/2299:2301, 1/5/2334:2335 | Single bulged A Not in a motif group | geometric IL_3OXE_001 IL_37497.2 | |
| IL_6D9J_174 | 1/5/2302:2309, 1/5/2329:2333 | No text annotation Not in a motif group | homologous IL_8C3A_063 IL_70923.2 | |
| IL_6D9J_175 | 1/5/2312:2314, 1/5/2325:2326 | Single bulged A Not in a motif group | geometric IL_5WWT_001 IL_37497.2 | |
| IL_6D9J_176 | 1/5/2358:2364, 1/5/3858:3863 | No text annotation Not in a motif group | homologous IL_8C3A_065 IL_76042.2 | |
| IL_6D9J_177 | 1/5/2415:2419, 1/5/2427:2429 | No text annotation Not in a motif group | ||
| IL_6D9J_178 | 1/5/2446:2450, 1/5/2509:2514 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_6D9J_179 | 1/5/2477:2479, 1/5/2499:2500 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_93353.1 | |
| IL_6D9J_180 | 1/5/2542:2547, 1/5/2772:2774 | No text annotation Not in a motif group | geometric IL_6DME_003 IL_63450.2 | |
| IL_6D9J_181 | 1/5/2549:2550, 1/5/2768:2770 | Single bulged U Not in a motif group | geometric IL_5TBW_131 IL_83039.13 | |
| IL_6D9J_182 | 1/5/2613:2614, 1/5/2724:2726 | Single bulged A Not in a motif group | geometric IL_1U63_004 IL_37497.2 | |
| IL_6D9J_183 | 1/5/2614:2616, 1/5/2721:2724 | Other IL Not in a motif group | geometric IL_5TBW_064 IL_84698.1 | |
| IL_6D9J_184 | 1/5/2646:2648, 1/5/2685:2688 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4V9F_076 IL_38958.7 | |
| IL_6D9J_185 | 1/5/2649:2654, 1/5/2680:2684 | No text annotation Not in a motif group | ||
| IL_6D9J_186 | 1/5/2656:2662, 1/5/2672:2678 | Kink-turn Not in a motif group | geometric IL_5TBW_073 IL_60192.2 | |
| IL_6D9J_187 | 1/5/2662:2664, 1/5/2671:2672 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_6D9J_188 | 1/5/2704:2705, 1/5/2710:2712 | No text annotation Not in a motif group | ||
| IL_6D9J_189 | 1/5/2832:2838, 1/5/3850:3853 | No text annotation Not in a motif group | homologous IL_8C3A_080 IL_49460.2 | |
| IL_6D9J_190 | 1/5/2842:2846, 1/5/3842:3846 | No text annotation Not in a motif group | ||
| IL_6D9J_191 | 1/5/2847:2850, 1/5/3840:3841 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_50694.2 | |
| IL_6D9J_192 | 1/5/2850:2855, 1/5/3837:3840 | No text annotation Not in a motif group | homologous IL_8C3A_083 IL_82842.2 | |
| IL_6D9J_193 | 1/5/2889:2891, 1/5/3610:3612 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_6D9J_194 | 1/5/2896:2897, 1/5/3602:3605 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_6D9J_195 | 1/5/3632:3633, 1/5/3827:3829 | Single bulged A Not in a motif group | homologous IL_5TBW_082 IL_37497.2 | |
| IL_6D9J_196 | 1/5/3660:3665, 1/5/3677:3684 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_6D9J_197 | 1/5/3700:3703, 1/5/3749:3750 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_88739.1 | |
| IL_6D9J_198 | 1/5/3704:3705, 1/5/3745:3748 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_6D9J_199 | 1/5/3708:3710, 1/5/3741:3742 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6D9J_200 | 1/5/3710:3714, 1/5/3739:3741 | No text annotation Not in a motif group | ||
| IL_6D9J_201 | 1/5/3714:3721, 1/5/3732:3739 | No text annotation Not in a motif group | ||
| IL_6D9J_202 | 1/5/3780:3794, 1/5/3806:3814 | No text annotation Not in a motif group | ||
| IL_6D9J_203 | 1/5/3895:3898, 1/5/4563:4565 | No text annotation Not in a motif group | homologous IL_8C3A_096 IL_63450.2 | |
| IL_6D9J_204 | 1/5/3900:3902, 1/5/4558:4561 | No text annotation Not in a motif group | homologous IL_8C3A_097 IL_54678.5 | |
| IL_6D9J_205 | 1/5/3913:3915, 1/5/4388:4389 | No text annotation Not in a motif group | homologous IL_8C3A_098 IL_83039.13 | |
| IL_6D9J_206 | 1/5/3916:3917, 1/5/4384:4387 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_6D9J_207 | 1/5/3927:3929, 1/5/4181:4184 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_095 IL_38958.7 | |
| IL_6D9J_208 | 1/5/3939:3941, 1/5/4072:4075 | No text annotation Not in a motif group | ||
| IL_6D9J_209 | 1/5/3948:3949, 1/5/4063:4065 | No text annotation Not in a motif group | ||
| IL_6D9J_210 | 1/5/3950:3952, 1/5/4060:4062 | No text annotation Not in a motif group | geometric IL_1NBS_006 IL_95997.1 | |
| IL_6D9J_211 | 1/5/3954:3966, 1/5/4055:4058 | No text annotation Not in a motif group | ||
| IL_6D9J_212 | 1/5/3969:3973, 1/5/4038:4052 | No text annotation Not in a motif group | ||
| IL_6D9J_213 | 1/5/4081:4088, 1/5/4161:4165 | No text annotation Not in a motif group | ||
| IL_6D9J_214 | 1/5/4094:4097, 1/5/4112:4114 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_6D9J_215 | 1/5/4100:4101, 1/5/4107:4109 | Single stack bend Not in a motif group | geometric IL_4V9F_005 IL_76488.2 | |
| IL_6D9J_216 | 1/5/4191:4192, 1/5/4202:4204 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_37497.2 | |
| IL_6D9J_217 | 1/5/4243:4245, 1/5/4263:4267 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_5TBW_099 IL_38958.7 | |
| IL_6D9J_218 | 1/5/4291:4293, 1/5/4317:4318 | Single bulged A Not in a motif group | geometric IL_5TBW_013 IL_37497.2 | |
| IL_6D9J_219 | 1/5/4295:4297, 1/5/4314:4315 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_76488.2 | |
| IL_6D9J_220 | 1/5/4297:4298, 1/5/4312:4314 | Single stack bend Not in a motif group | geometric IL_4V9F_081 IL_76488.2 | |
| IL_6D9J_221 | 1/5/4347:4351, 1/5/4363:4365 | Other IL Not in a motif group | geometric IL_5TBW_064 IL_84698.1 | |
| IL_6D9J_222 | 1/5/4400:4401, 1/5/4442:4444 | Major groove platform Not in a motif group | homologous IL_5TBW_102 IL_27635.1 | |
| IL_6D9J_223 | 1/5/4401:4403, 1/5/4440:4442 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_95997.1 | |
| IL_6D9J_224 | 1/5/4403:4407, 1/5/4435:4440 | No text annotation Not in a motif group | ||
| IL_6D9J_225 | 1/5/4412:4416, 1/5/4426:4430 | Triple sheared Not in a motif group | homologous IL_5TBW_106 IL_56467.8 | |
| IL_6D9J_226 | 1/5/4453:4454, 1/5/4526:4528 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_6D9J_227 | 1/5/4456:4458, 1/5/4520:4524 | No text annotation Not in a motif group | homologous IL_8C3A_116 IL_90933.2 | |
| IL_6D9J_228 | 1/5/4458:4459, 1/5/4517:4520 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_71530.2 | |
| IL_6D9J_229 | 1/5/4466:4468, 1/5/4489:4491 | No text annotation Not in a motif group | homologous IL_8C3A_118 IL_51629.2 | |
| IL_6D9J_230 | 1/5/4468:4470, 1/5/4485:4489 | No text annotation Not in a motif group | ||
| IL_6D9J_231 | 1/5/4495:4497, 1/5/4503:4505 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_95997.1 | |
| IL_6D9J_232 | 1/5/4537:4538, 1/5/4547:4549 | Single bulged A Not in a motif group | geometric IL_7RQB_101 IL_37497.2 | |
| IL_6D9J_233 | 1/5/4575:4577, 1/5/4727:4728 | No text annotation Not in a motif group | ||
| IL_6D9J_234 | 1/5/4577:4578, 1/5/4725:4727 | Single stack bend Not in a motif group | geometric IL_5J7L_044 IL_76488.2 | |
| IL_6D9J_235 | 1/5/4579:4585, 1/5/4717:4724 | No text annotation Not in a motif group | ||
| IL_6D9J_236 | 1/5/4590:4592, 1/5/4618:4620 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_6D9J_237 | 1/5/4596:4603, 1/5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_6D9J_238 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation Not in a motif group | ||
| IL_6D9J_239 | 1/5/4632:4637, 1/5/4662:4666 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_6D9J_240 | 1/5/4637:4640, 1/5/4659:4662 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1MFQ_004 IL_30621.2 | |
| IL_6D9J_241 | 1/5/4641:4642, 1/5/4655:4658 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_71530.2 | |
| IL_6D9J_242 | 1/5/4678:4685, 1/5/4705:4712 | No text annotation Not in a motif group | ||
| IL_6D9J_243 | 1/5/4739:4743, 1/5/4957:4960 | No text annotation Not in a motif group | ||
| IL_6D9J_244 | 1/5/4743:4747, 1/5/4953:4957 | No text annotation Not in a motif group | ||
| IL_6D9J_245 | 1/5/4756:4766, 1/5/4868:4877 | No text annotation Not in a motif group | ||
| IL_6D9J_246 | 1/5/4769:4773, 1/5/4862:4865 | No text annotation Not in a motif group | ||
| IL_6D9J_247 | 1/5/4885:4888, 1/5/4931:4934 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_109 IL_30621.2 | |
| IL_6D9J_248 | 1/5/4890:4896, 1/5/4924:4929 | No text annotation Not in a motif group | ||
| IL_6D9J_249 | 1/5/4896:4899, 1/5/4920:4924 | No text annotation Not in a motif group | ||
| IL_6D9J_250 | 1/5/4972:4975, 1/5/4983:4986 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.2 | |
| IL_6D9J_251 | 1/5/4991:4994, 1/5/5057:5060 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_168 IL_67743.1 | |
| IL_6D9J_252 | 1/5/4996:4997, 1/5/5053:5055 | Single bulged C Not in a motif group | geometric IL_1KUQ_002 IL_61258.12 | |
| IL_6D9J_253 | 1/5/5000:5002, 1/5/5045:5050 | No text annotation Not in a motif group | homologous IL_8C3A_138 IL_90933.2 | |
| IL_6D9J_254 | 1/5/5003:5009, 1/5/5039:5044 | No text annotation Not in a motif group | ||
| IL_6D9J_255 | 1/5/5012:5014, 1/5/5035:5036 | No text annotation Not in a motif group | homologous IL_8C3A_140 IL_83039.13 | |
| IL_6D9J_256 | 1/5/5014:5017, 1/5/5032:5035 | Double sheared Not in a motif group | geometric IL_4V9F_100 IL_09705.9 | |
| IL_6D9J_257 | 1/7/15:16, 1/7/62:64 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_6D9J_258 | 1/7/21:29, 1/7/48:57 | No text annotation Not in a motif group | ||
| IL_6D9J_259 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_6D9J_260 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_6D9J_261 | 1/7/79:81, 1/7/95:97 | No text annotation Not in a motif group | geometric IL_1RPU_001 IL_95997.1 | |
| IL_6D9J_262 | 1/7/82:85, 1/7/92:94 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_6D9J_263 | 1/8/64:66, 1/8/92:95 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_82068.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6D9J_001 | 1/2/40:41, 1/2/481:487, 1/2/512:514 | No text annotation Not in a motif group | ||
| J3_6D9J_002 | 1/2/682:684, 1/2/918:922, 1/2/1022:1023 | No text annotation Not in a motif group | ||
| J3_6D9J_003 | 1/2/816:819, 1/2/829:831, 1/2/843:848 | No text annotation Not in a motif group | ||
| J3_6D9J_004 | 1/2/938:941, 1/2/985:993, 1/2/1000:1004 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_6D9J_005 | 1/2/1094:1096, 1/2/1136:1141, 1/2/1147:1151 | No text annotation Not in a motif group | ||
| J3_6D9J_006 | 1/2/1218:1221, 1/2/1645:1651, 1/2/1673:1680 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_6D9J_007 | 1/2/1225:1228, 1/2/1530:1532, 1/2/1638:1641 | No text annotation Not in a motif group | homologous J3_8C3A_039 NA | |
| J3_6D9J_008 | 1/2/1237:1244, 1/2/1255:1266, 1/2/1516:1520 | No text annotation Not in a motif group | ||
| J3_6D9J_009 | 1/2/1340:1347, 1/2/1382:1389, 1/2/1481:1486 | No text annotation Not in a motif group | ||
| J3_6D9J_010 | 1/2/1350:1351, 1/2/1360:1363, 1/2/1375:1379 | No text annotation Not in a motif group | ||
| J3_6D9J_011 | 1/2/1532:1536, 1/2/1597:1604, 1/2/1635:1638 | No text annotation Not in a motif group | ||
| J3_6D9J_012 | 1/5/112:116, 1/5/155:160, 1/5/275:278 | No text annotation Not in a motif group | ||
| J3_6D9J_013 | 1/5/380:387, 1/5/414:415, 1/8/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_6D9J_014 | 1/5/1531:1537, 1/5/1622:1624, 1/5/1640:1643 | No text annotation Not in a motif group | homologous J3_5TBW_004 NA | |
| J3_6D9J_015 | 1/5/1545:1548, 1/5/1580:1585, 1/5/1608:1614 | No text annotation Not in a motif group | ||
| J3_6D9J_016 | 1/5/1726:1727, 1/5/1802:1806, 1/5/1832:1837 | No text annotation Not in a motif group | ||
| J3_6D9J_017 | 1/5/1968:1972, 1/5/1994:2001, 1/5/2016:2019 | No text annotation Not in a motif group | ||
| J3_6D9J_018 | 1/5/2393:2399, 1/5/2805:2807, 1/5/2819:2822 | No text annotation Not in a motif group | homologous J3_8C3A_006 NA | |
| J3_6D9J_019 | 1/5/2402:2405, 1/5/2785:2791, 1/5/2800:2802 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_6D9J_020 | 1/5/3935:3939, 1/5/4075:4078, 1/5/4168:4175 | No text annotation Not in a motif group | ||
| J3_6D9J_021 | 1/5/4091:4094, 1/5/4114:4129, 1/5/4155:4158 | No text annotation Not in a motif group | ||
| J3_6D9J_022 | 1/5/4241:4243, 1/5/4267:4269, 1/5/4278:4283 | No text annotation Not in a motif group | homologous J3_8C3A_010 NA | |
| J3_6D9J_023 | 1/5/4463:4466, 1/5/4491:4493, 1/5/4507:4513 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_6D9J_024 | 1/5/4970:4972, 1/5/4986:4991, 1/5/5060:5063 | No text annotation Not in a motif group | ||
| J3_6D9J_025 | 1/7/9:14, 1/7/65:67, 1/7/108:110 | No text annotation Not in a motif group | ||
| J3_6D9J_026 | 1/8/43:45, 1/8/58:64, 1/8/95:100 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: