6XIR Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6XIR_001 | 1/1/38:45 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_06192.2 | |
| HL_6XIR_002 | 1/1/69:74 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_6XIR_003 | 1/1/90:96 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_6XIR_004 | 1/1/132:136 | No text annotation Not in a motif group | homologous HL_8C3A_004 HL_98426.1 | |
| HL_6XIR_005 | 1/1/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_6XIR_006 | 1/1/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_6XIR_007 | 1/1/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.8 | |
| HL_6XIR_008 | 1/1/278:287 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
| HL_6XIR_009 | 1/1/303:312 | No text annotation Not in a motif group | homologous HL_8C3A_009 HL_12078.2 | |
| HL_6XIR_010 | 1/1/357:362 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_42097.1 | |
| HL_6XIR_011 | 1/1/382:387 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_42097.1 | |
| HL_6XIR_013 | 1/1/544:547 | No text annotation Not in a motif group | ||
| HL_6XIR_014 | 1/1/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_6XIR_015 | 1/1/640:649 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_89380.2 | |
| HL_6XIR_016 | 1/1/686:694 | No text annotation Not in a motif group | homologous HL_8C3A_015 HL_03345.1 | |
| HL_6XIR_017 | 1/1/707:712 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_6XIR_018 | 1/1/732:737 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_6XIR_019 | 1/1/758:773 | No text annotation Not in a motif group | ||
| HL_6XIR_020 | 1/1/844:849 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_42097.1 | |
| HL_6XIR_021 | 1/1/876:885 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.6 | |
| HL_6XIR_022 | 1/1/910:918 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_6XIR_023 | 1/1/958:963 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_6XIR_024 | 1/1/1023:1029 | No text annotation Not in a motif group | ||
| HL_6XIR_025 | 1/1/1076:1083 | No text annotation Not in a motif group | homologous HL_5TBW_024 HL_71554.2 | |
| HL_6XIR_026 | 1/1/1126:1132 | No text annotation Not in a motif group | homologous HL_8C3A_025 HL_42097.1 | |
| HL_6XIR_027 | 1/1/1148:1155 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.2 | |
| HL_6XIR_029 | 1/1/1347:1357 | No text annotation Not in a motif group | geometric HL_4OOG_001 HL_65572.2 | |
| HL_6XIR_030 | 1/1/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_6XIR_031 | 1/1/1462:1470 | No text annotation Not in a motif group | homologous HL_8C3A_031 HL_89380.2 | |
| HL_6XIR_032 | 1/1/1506:1512 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_46680.1 | |
| HL_6XIR_033 | 1/1/1544:1549 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_76539.2 | |
| HL_6XIR_034 | 1/1/1565:1574 | No text annotation Not in a motif group | ||
| HL_6XIR_035 | 1/1/1599:1608 | No text annotation Not in a motif group | homologous HL_8C3A_035 HL_69023.2 | |
| HL_6XIR_036 | 1/1/1634:1639 | No text annotation Not in a motif group | homologous HL_8C3A_036 HL_42097.1 | |
| HL_6XIR_037 | 1/1/1680:1688 | No text annotation Not in a motif group | homologous HL_8C3A_037 HL_60812.1 | |
| HL_6XIR_038 | 1/1/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_86373.2 | |
| HL_6XIR_039 | 1/1/1759:1766 | No text annotation Not in a motif group | geometric HL_2Y9H_005 HL_47100.1 | |
| HL_6XIR_040 | 1/1/1792:1796 | No text annotation Not in a motif group | homologous HL_8C3A_040 HL_49678.1 | |
| HL_6XIR_041 | 1/1/1844:1851 | No text annotation Not in a motif group | homologous HL_8C3A_041 HL_64430.2 | |
| HL_6XIR_042 | 1/1/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.1 | |
| HL_6XIR_043 | 1/1/1923:1928 | UNCG Not in a motif group | geometric HL_5Y85_004 HL_03562.2 | |
| HL_6XIR_045 | 1/1/2110:2114 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_20062.1 | |
| HL_6XIR_046 | 1/1/2135:2145 | No text annotation Not in a motif group | homologous HL_8C3A_046 HL_43613.5 | |
| HL_6XIR_047 | 1/1/2164:2170 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.1 | |
| HL_6XIR_048 | 1/1/2219:2226 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_6XIR_049 | 1/1/2253:2263 | No text annotation Not in a motif group | ||
| HL_6XIR_050 | 1/1/2292:2300 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_51824.1 | |
| HL_6XIR_051 | 1/1/2369:2378 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.6 | |
| HL_6XIR_053 | 1/1/2534:2546 | No text annotation Not in a motif group | ||
| HL_6XIR_054 | 1/1/2568:2574 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_52841.1 | |
| HL_6XIR_055 | 1/1/2616:2624 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.2 | |
| HL_6XIR_056 | 1/1/2633:2645 | No text annotation Not in a motif group | homologous HL_8C3A_056 HL_19870.6 | |
| HL_6XIR_057 | 1/1/2673:2681 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_6XIR_058 | 1/1/2693:2700 | No text annotation Not in a motif group | homologous HL_8C3A_058 HL_12078.2 | |
| HL_6XIR_059 | 1/1/2724:2732 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_6XIR_060 | 1/1/2744:2749 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_42097.1 | |
| HL_6XIR_061 | 1/1/2776:2784 | No text annotation Not in a motif group | homologous HL_8C3A_061 HL_96598.1 | |
| HL_6XIR_062 | 1/1/2840:2848 | GNRA with one bulged base Not in a motif group | geometric HL_5LM7_001 HL_42097.1 | |
| HL_6XIR_063 | 1/1/2897:2904 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_6XIR_064 | 1/1/2920:2926 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_43656.2 | |
| HL_6XIR_065 | 1/1/2963:2968 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_42097.1 | |
| HL_6XIR_066 | 1/1/3025:3030 | No text annotation Not in a motif group | homologous HL_8C3A_066 HL_42097.1 | |
| HL_6XIR_067 | 1/1/3068:3073 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_6XIR_068 | 1/1/3111:3123 | No text annotation Not in a motif group | ||
| HL_6XIR_069 | 1/1/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_98426.1 | |
| HL_6XIR_070 | 1/1/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_6XIR_071 | 1/1/3303:3311 | No text annotation Not in a motif group | homologous HL_8C3A_071 HL_27930.1 | |
| HL_6XIR_072 | 1/1/3350:3353 | No text annotation Not in a motif group | ||
| HL_6XIR_074 | 1/2/64:86 | No text annotation Not in a motif group | ||
| HL_6XIR_075 | 1/2/149:165 | No text annotation Not in a motif group | ||
| HL_6XIR_076 | 1/2/190:196 | No text annotation Not in a motif group | ||
| HL_6XIR_078 | 1/2/243:250 | No text annotation Not in a motif group | ||
| HL_6XIR_079 | 1/2/276:279 | No text annotation Not in a motif group | ||
| HL_6XIR_080 | 1/2/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_6XIR_081 | 1/2/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_6XIR_082 | 1/2/393:404 | No text annotation Not in a motif group | ||
| HL_6XIR_083 | 1/2/411:423 | No text annotation Not in a motif group | ||
| HL_6XIR_084 | 1/2/450:456 | No text annotation Not in a motif group | ||
| HL_6XIR_086 | 1/2/520:532 | No text annotation Not in a motif group | ||
| HL_6XIR_093 | 1/2/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6XIR_096 | 1/2/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_6XIR_106 | 1/2/1594:1602 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_6XIR_109 | 1/3/36:41 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_87939.1 | |
| HL_6XIR_110 | 1/3/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_6XIR_112 | 1/4/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_6XIR_113 | 1/4/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 | |
| HL_6XIR_114 | 1/AX/13:22 | No text annotation Not in a motif group | homologous HL_6ORD_035 HL_14843.1 | |
| HL_6XIR_115 | 1/AX/31:39 | No text annotation Not in a motif group | ||
| HL_6XIR_116 | 1/AX/53:61 | No text annotation Not in a motif group | ||
| HL_6XIR_117 | 1/AZ/13:22 | No text annotation Not in a motif group | homologous HL_6ORD_035 HL_14843.1 | |
| HL_6XIR_118 | 1/AZ/31:39 | No text annotation Not in a motif group | ||
| HL_6XIR_119 | 1/AZ/53:61 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6XIR_012 | No text annotation | ||
| HL_6XIR_028 | No text annotation | ||
| HL_6XIR_044 | No text annotation | ||
| HL_6XIR_052 | No text annotation | ||
| HL_6XIR_073 | No text annotation | ||
| HL_6XIR_077 | No text annotation | ||
| HL_6XIR_085 | No text annotation | ||
| HL_6XIR_087 | No text annotation | ||
| HL_6XIR_088 | No text annotation | ||
| HL_6XIR_089 | No text annotation | ||
| HL_6XIR_090 | No text annotation | ||
| HL_6XIR_091 | No text annotation | ||
| HL_6XIR_092 | No text annotation | ||
| HL_6XIR_094 | No text annotation | ||
| HL_6XIR_095 | No text annotation | ||
| HL_6XIR_097 | No text annotation | ||
| HL_6XIR_098 | No text annotation | ||
| HL_6XIR_099 | No text annotation | ||
| HL_6XIR_100 | No text annotation | ||
| HL_6XIR_101 | No text annotation | ||
| HL_6XIR_102 | No text annotation | ||
| HL_6XIR_103 | No text annotation | ||
| HL_6XIR_104 | No text annotation | ||
| HL_6XIR_105 | No text annotation | ||
| HL_6XIR_107 | No text annotation | ||
| HL_6XIR_108 | No text annotation | ||
| HL_6XIR_111 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6XIR_001 | 1/1/3:4, 1/4/155:156 | No text annotation Not in a motif group | ||
| IL_6XIR_002 | 1/1/7:8, 1/4/150:152 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_6XIR_003 | 1/1/13:15, 1/4/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_6XIR_004 | 1/1/27:28, 1/1/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_6XIR_005 | 1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS Not in a motif group | homologous IL_5TBW_005 IL_35728.2 | |
| IL_6XIR_006 | 1/1/82:89, 1/1/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_6XIR_007 | 1/1/116:123, 1/1/149:153 | No text annotation Not in a motif group | ||
| IL_6XIR_008 | 1/1/123:124, 1/1/144:149 | No text annotation Not in a motif group | homologous IL_8C3A_007 IL_19724.2 | |
| IL_6XIR_009 | 1/1/125:127, 1/1/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_6XIR_010 | 1/1/160:162, 1/1/260:261 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6XIR_011 | 1/1/162:163, 1/1/258:260 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_76488.2 | |
| IL_6XIR_012 | 1/1/163:167, 1/1/254:258 | No text annotation Not in a motif group | ||
| IL_6XIR_013 | 1/1/167:171, 1/1/247:254 | No text annotation Not in a motif group | ||
| IL_6XIR_014 | 1/1/177:178, 1/1/238:241 | No text annotation Not in a motif group | ||
| IL_6XIR_015 | 1/1/189:191, 1/1/204:205 | Single bulged U Not in a motif group | homologous IL_5TBW_012 IL_83039.13 | |
| IL_6XIR_016 | 1/1/337:339, 1/4/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.2 | |
| IL_6XIR_017 | 1/1/376:379, 1/1/390:403 | No text annotation Not in a motif group | homologous IL_8C3A_015 IL_60992.6 | |
| IL_6XIR_018 | 1/1/404:410, 1/4/13:19 | No text annotation Not in a motif group | homologous IL_8C3A_016 IL_66414.6 | |
| IL_6XIR_019 | 1/1/429:431, 1/1/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_6XIR_020 | 1/1/512:513, 1/1/577:579 | No text annotation Not in a motif group | homologous IL_8C3A_020 IL_37497.2 | |
| IL_6XIR_021 | 1/1/517:525, 1/1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_6XIR_022 | 1/1/531:540, 1/1/551:561 | No text annotation Not in a motif group | ||
| IL_6XIR_023 | 1/1/668:670, 1/1/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_95997.1 | |
| IL_6XIR_024 | 1/1/680:684, 1/1/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_6XIR_025 | 1/1/725:728, 1/1/741:745 | No text annotation Not in a motif group | homologous IL_8C3A_025 IL_07235.1 | |
| IL_6XIR_026 | 1/1/752:753, 1/1/779:781 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_37497.2 | |
| IL_6XIR_027 | 1/1/755:756, 1/1/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.13 | |
| IL_6XIR_028 | 1/1/803:805, 1/1/938:940 | No text annotation Not in a motif group | homologous IL_8C3A_029 IL_95997.1 | |
| IL_6XIR_029 | 1/1/805:809, 1/1/931:938 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.6 | |
| IL_6XIR_030 | 1/1/828:829, 1/1/895:897 | Single bulged A Not in a motif group | geometric IL_7A0S_016 IL_37497.2 | |
| IL_6XIR_031 | 1/1/833:834, 1/1/859:861 | No text annotation Not in a motif group | homologous IL_8C3A_032 IL_00225.2 | |
| IL_6XIR_032 | 1/1/834:838, 1/1/855:859 | Triple sheared Not in a motif group | geometric IL_4WF9_024 IL_56467.8 | |
| IL_6XIR_033 | 1/1/869:872, 1/1/888:890 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.2 | |
| IL_6XIR_034 | 1/1/873:875, 1/1/886:887 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.13 | |
| IL_6XIR_035 | 1/1/907:909, 1/1/919:923 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_033 IL_90991.6 | |
| IL_6XIR_036 | 1/1/954:956, 1/1/965:967 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
| IL_6XIR_037 | 1/1/969:970, 1/1/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_6XIR_038 | 1/1/977:981, 1/1/1102:1104 | No text annotation Not in a motif group | homologous IL_5TBW_036 IL_67474.4 | |
| IL_6XIR_039 | 1/1/983:985, 1/1/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_6XIR_040 | 1/1/991:997, 1/1/1052:1058 | No text annotation Not in a motif group | homologous IL_8C3A_041 IL_93830.3 | |
| IL_6XIR_041 | 1/1/997:998, 1/1/1050:1052 | Minor groove platform Not in a motif group | geometric IL_5TBW_039 IL_42622.2 | |
| IL_6XIR_042 | 1/1/999:1004, 1/1/1046:1049 | No text annotation Not in a motif group | homologous IL_8C3A_043 IL_02509.1 | |
| IL_6XIR_043 | 1/1/1006:1009, 1/1/1041:1044 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.2 | |
| IL_6XIR_044 | 1/1/1009:1011, 1/1/1039:1041 | No text annotation Not in a motif group | homologous IL_8C3A_045 IL_95997.1 | |
| IL_6XIR_045 | 1/1/1013:1015, 1/1/1036:1037 | No text annotation Not in a motif group | ||
| IL_6XIR_046 | 1/1/1015:1020, 1/1/1032:1036 | No text annotation Not in a motif group | ||
| IL_6XIR_047 | 1/1/1069:1071, 1/1/1087:1089 | No text annotation Not in a motif group | homologous IL_8C3A_047 IL_95997.1 | |
| IL_6XIR_048 | 1/1/1074:1076, 1/1/1083:1084 | No text annotation Not in a motif group | homologous IL_8C3A_048 IL_00225.2 | |
| IL_6XIR_049 | 1/1/1120:1122, 1/1/1136:1138 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_95997.1 | |
| IL_6XIR_050 | 1/1/1167:1171, 1/1/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_6XIR_051 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5TBW_049 IL_15861.7 | |
| IL_6XIR_052 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U Not in a motif group | homologous IL_5TBW_050 IL_83039.13 | |
| IL_6XIR_053 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_27086.1 | |
| IL_6XIR_054 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_6XIR_055 | 1/1/1207:1209, 1/1/1296:1297 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.13 | |
| IL_6XIR_056 | 1/1/1217:1226, 1/1/1283:1288 | No text annotation Not in a motif group | ||
| IL_6XIR_057 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_6XIR_058 | 1/1/1385:1387, 1/1/1420:1421 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.2 | |
| IL_6XIR_059 | 1/1/1388:1395, 1/1/1415:1419 | No text annotation Not in a motif group | homologous IL_8C3A_063 IL_70923.2 | |
| IL_6XIR_060 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_6XIR_061 | 1/1/1444:1450, 1/1/2354:2359 | No text annotation Not in a motif group | homologous IL_8C3A_065 IL_76042.2 | |
| IL_6XIR_062 | 1/1/1501:1505, 1/1/1513:1515 | C-loop Not in a motif group | geometric IL_4V9F_051 IL_63596.6 | |
| IL_6XIR_063 | 1/1/1532:1536, 1/1/1585:1590 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_6XIR_064 | 1/1/1618:1621, 1/1/1824:1826 | No text annotation Not in a motif group | homologous IL_8C3A_070 IL_84698.1 | |
| IL_6XIR_065 | 1/1/1623:1624, 1/1/1819:1822 | Multiple bulged bases Not in a motif group | geometric IL_4V9F_021 IL_76389.1 | |
| IL_6XIR_066 | 1/1/1626:1631, 1/1/1811:1817 | No text annotation Not in a motif group | ||
| IL_6XIR_067 | 1/1/1645:1649, 1/1/1806:1810 | Triple sheared Not in a motif group | geometric IL_5TBW_067 IL_56467.8 | |
| IL_6XIR_068 | 1/1/1661:1663, 1/1/1786:1788 | No text annotation Not in a motif group | homologous IL_8C3A_074 IL_95997.1 | |
| IL_6XIR_069 | 1/1/1669:1670, 1/1/1778:1780 | Single bulged C Not in a motif group | geometric IL_5TBW_069 IL_61258.12 | |
| IL_6XIR_070 | 1/1/1670:1671, 1/1/1776:1778 | Single stack bend Not in a motif group | homologous IL_5TBW_070 IL_76488.2 | |
| IL_6XIR_071 | 1/1/1694:1698, 1/1/1747:1752 | No text annotation Not in a motif group | homologous IL_8C3A_077 IL_69313.1 | |
| IL_6XIR_072 | 1/1/1702:1707, 1/1/1737:1743 | No text annotation Not in a motif group | homologous IL_5TBW_072 IL_39753.1 | |
| IL_6XIR_073 | 1/1/1711:1717, 1/1/1727:1733 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_6XIR_074 | 1/1/1883:1889, 1/1/2346:2349 | No text annotation Not in a motif group | homologous IL_8C3A_080 IL_49460.2 | |
| IL_6XIR_075 | 1/1/1895:1897, 1/1/2338:2340 | No text annotation Not in a motif group | homologous IL_8C3A_081 IL_54997.7 | |
| IL_6XIR_076 | 1/1/1898:1901, 1/1/2336:2337 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_50694.2 | |
| IL_6XIR_077 | 1/1/1901:1906, 1/1/2333:2336 | No text annotation Not in a motif group | homologous IL_8C3A_083 IL_82842.2 | |
| IL_6XIR_078 | 1/1/1918:1923, 1/1/1928:1934 | No text annotation Not in a motif group | homologous IL_8C3A_084 IL_65969.2 | |
| IL_6XIR_079 | 1/1/1940:1942, 1/1/2106:2108 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_6XIR_080 | 1/1/1947:1948, 1/1/2098:2101 | No text annotation Not in a motif group | ||
| IL_6XIR_081 | 1/1/2128:2129, 1/1/2323:2325 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.2 | |
| IL_6XIR_082 | 1/1/2156:2161, 1/1/2173:2180 | No text annotation Not in a motif group | homologous IL_8C3A_088 IL_64509.1 | |
| IL_6XIR_083 | 1/1/2196:2199, 1/1/2245:2246 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.1 | |
| IL_6XIR_084 | 1/1/2200:2201, 1/1/2241:2244 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_6XIR_085 | 1/1/2204:2206, 1/1/2237:2238 | No text annotation Not in a motif group | ||
| IL_6XIR_086 | 1/1/2206:2210, 1/1/2235:2237 | No text annotation Not in a motif group | ||
| IL_6XIR_087 | 1/1/2210:2217, 1/1/2228:2235 | No text annotation Not in a motif group | ||
| IL_6XIR_088 | 1/1/2276:2277, 1/1/2307:2310 | No text annotation Not in a motif group | homologous IL_8C3A_094 IL_59677.2 | |
| IL_6XIR_089 | 1/1/2277:2288, 1/1/2304:2307 | No text annotation Not in a motif group | geometric IL_5TBW_090 IL_81589.2 | |
| IL_6XIR_090 | 1/1/2391:2394, 1/1/2986:2988 | No text annotation Not in a motif group | homologous IL_8C3A_096 IL_63450.2 | |
| IL_6XIR_091 | 1/1/2396:2398, 1/1/2981:2984 | No text annotation Not in a motif group | homologous IL_8C3A_097 IL_54678.5 | |
| IL_6XIR_092 | 1/1/2409:2411, 1/1/2811:2812 | No text annotation Not in a motif group | homologous IL_8C3A_098 IL_83039.13 | |
| IL_6XIR_093 | 1/1/2412:2413, 1/1/2807:2810 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_6XIR_094 | 1/1/2423:2425, 1/1/2604:2607 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.7 | |
| IL_6XIR_095 | 1/1/2520:2526, 1/1/2584:2587 | No text annotation Not in a motif group | homologous IL_8C3A_106 IL_74114.1 | |
| IL_6XIR_096 | 1/1/2532:2534, 1/1/2546:2547 | No text annotation Not in a motif group | ||
| IL_6XIR_097 | 1/1/2565:2568, 1/1/2574:2576 | No text annotation Not in a motif group | ||
| IL_6XIR_098 | 1/1/2614:2615, 1/1/2625:2627 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_37497.2 | |
| IL_6XIR_099 | 1/1/2666:2668, 1/1/2686:2690 | No text annotation Not in a motif group | homologous IL_8C3A_108 IL_38958.7 | |
| IL_6XIR_100 | 1/1/2718:2721, 1/1/2735:2738 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.2 | |
| IL_6XIR_101 | 1/1/2770:2773, 1/1/2787:2788 | No text annotation Not in a motif group | homologous IL_8C3A_110 IL_76488.2 | |
| IL_6XIR_102 | 1/1/2823:2826, 1/1/2863:2867 | No text annotation Not in a motif group | homologous IL_8C3A_111 IL_58686.2 | |
| IL_6XIR_103 | 1/1/2826:2828, 1/1/2862:2863 | Major groove platform Not in a motif group | homologous IL_5TBW_104 IL_76223.2 | |
| IL_6XIR_104 | 1/1/2828:2831, 1/1/2857:2862 | No text annotation Not in a motif group | ||
| IL_6XIR_105 | 1/1/2835:2839, 1/1/2849:2853 | No text annotation Not in a motif group | ||
| IL_6XIR_106 | 1/1/2876:2877, 1/1/2949:2951 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_6XIR_107 | 1/1/2879:2881, 1/1/2943:2947 | No text annotation Not in a motif group | homologous IL_8C3A_116 IL_90933.2 | |
| IL_6XIR_108 | 1/1/2881:2882, 1/1/2940:2943 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_71530.2 | |
| IL_6XIR_109 | 1/1/2889:2891, 1/1/2912:2914 | No text annotation Not in a motif group | geometric IL_4WF9_020 IL_95997.1 | |
| IL_6XIR_110 | 1/1/2891:2892, 1/1/2909:2912 | Minor groove platform with intercalation Not in a motif group | geometric IL_5J7L_342 IL_95601.3 | |
| IL_6XIR_111 | 1/1/2918:2920, 1/1/2926:2928 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_95997.1 | |
| IL_6XIR_112 | 1/1/2960:2961, 1/1/2970:2972 | No text annotation Not in a motif group | ||
| IL_6XIR_113 | 1/1/3004:3007, 1/1/3139:3144 | No text annotation Not in a motif group | homologous IL_8C3A_123 IL_09705.9 | |
| IL_6XIR_114 | 1/1/3012:3014, 1/1/3040:3042 | No text annotation Not in a motif group | homologous IL_5TBW_115 IL_95997.1 | |
| IL_6XIR_115 | 1/1/3019:3025, 1/1/3030:3035 | No text annotation Not in a motif group | ||
| IL_6XIR_116 | 1/1/3047:3051, 1/1/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_37712.2 | |
| IL_6XIR_117 | 1/1/3054:3059, 1/1/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_6XIR_118 | 1/1/3063:3064, 1/1/3077:3080 | No text annotation Not in a motif group | homologous IL_8C3A_128 IL_71530.2 | |
| IL_6XIR_119 | 1/1/3103:3107, 1/1/3127:3131 | No text annotation Not in a motif group | ||
| IL_6XIR_120 | 1/1/3164:3166, 1/1/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
| IL_6XIR_121 | 1/1/3168:3170, 1/1/3280:3282 | No text annotation Not in a motif group | homologous IL_5TBW_122 IL_95997.1 | |
| IL_6XIR_122 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.2 | |
| IL_6XIR_123 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
| IL_6XIR_124 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_6XIR_125 | 1/1/3227:3230, 1/1/3257:3258 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_119 IL_71530.2 | |
| IL_6XIR_126 | 1/1/3231:3235, 1/1/3252:3256 | No text annotation Not in a motif group | ||
| IL_6XIR_127 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_128 IL_30621.2 | |
| IL_6XIR_128 | 1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_129 IL_30621.2 | |
| IL_6XIR_129 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U Not in a motif group | geometric IL_4V9F_029 IL_83039.13 | |
| IL_6XIR_130 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_6XIR_131 | 1/1/3328:3330, 1/1/3373:3378 | No text annotation Not in a motif group | homologous IL_8C3A_138 IL_90933.2 | |
| IL_6XIR_132 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation Not in a motif group | homologous IL_8C3A_139 IL_83162.5 | |
| IL_6XIR_133 | 1/1/3340:3342, 1/1/3363:3364 | No text annotation Not in a motif group | homologous IL_8C3A_140 IL_83039.13 | |
| IL_6XIR_134 | 1/1/3342:3345, 1/1/3360:3363 | No text annotation Not in a motif group | homologous IL_8C3A_141 IL_09705.9 | |
| IL_6XIR_135 | 1/1/3349:3350, 1/1/3353:3356 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1NBS_009 IL_69996.1 | |
| IL_6XIR_136 | 1/2/22:27, 1/2/599:603 | No text annotation Not in a motif group | ||
| IL_6XIR_137 | 1/2/42:48, 1/2/431:433 | No text annotation Not in a motif group | ||
| IL_6XIR_138 | 1/2/50:52, 1/2/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_6XIR_139 | 1/2/58:63, 1/2/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_6XIR_140 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_6XIR_141 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_6XIR_142 | 1/2/117:123, 1/2/294:299 | No text annotation Not in a motif group | ||
| IL_6XIR_143 | 1/2/143:149, 1/2/165:172 | No text annotation Not in a motif group | ||
| IL_6XIR_144 | 1/2/184:186, 1/2/199:201 | No text annotation Not in a motif group | ||
| IL_6XIR_145 | 1/2/186:190, 1/2/196:199 | No text annotation Not in a motif group | ||
| IL_6XIR_146 | 1/2/204:206, 1/2/259:263 | Major groove platform with extra cWW Not in a motif group | geometric IL_3PDR_004 IL_18471.2 | |
| IL_6XIR_147 | 1/2/206:208, 1/2/257:259 | No text annotation Not in a motif group | homologous IL_4V88_398 IL_95997.1 | |
| IL_6XIR_148 | 1/2/270:274, 1/2/282:285 | No text annotation Not in a motif group | ||
| IL_6XIR_149 | 1/2/275:276, 1/2/279:281 | No text annotation Not in a motif group | ||
| IL_6XIR_150 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6XIR_151 | 1/2/318:323, 1/2/345:346 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_6XIR_153 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_6XIR_154 | 1/2/439:441, 1/2/463:464 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_6XIR_155 | 1/2/443:447, 1/2/460:461 | C-loop Not in a motif group | geometric IL_4LFB_015 IL_75255.1 | |
| IL_6XIR_156 | 1/2/447:448, 1/2/458:460 | No text annotation Not in a motif group | homologous IL_8C3A_417 IL_00225.2 | |
| IL_6XIR_157 | 1/2/481:485, 1/2/502:507 | No text annotation Not in a motif group | ||
| IL_6XIR_160 | 1/2/514:516, 1/2/536:543 | No text annotation Not in a motif group | ||
| IL_6XIR_161 | 1/2/516:518, 1/2/533:536 | No text annotation Not in a motif group | ||
| IL_6XIR_162 | 1/2/518:520, 1/2/532:533 | No text annotation Not in a motif group | ||
| IL_6XIR_166 | 1/2/616:622, 1/2/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_6XIR_167 | 1/2/624:626, 1/2/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6XIR_168 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_6XIR_173 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.2 | |
| IL_6XIR_174 | 1/2/867:870, 1/2/957:961 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_30621.2 | |
| IL_6XIR_175 | 1/2/871:874, 1/2/953:956 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_430 IL_30621.2 | |
| IL_6XIR_176 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.2 | |
| IL_6XIR_177 | 1/2/885:888, 1/2/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_6XIR_181 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6XIR_182 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_6XIR_183 | 1/2/1051:1053, 1/2/1066:1067 | No text annotation Not in a motif group | ||
| IL_6XIR_187 | 1/2/1157:1161, 1/2/1616:1621 | No text annotation Not in a motif group | ||
| IL_6XIR_188 | 1/2/1172:1176, 1/2/1463:1467 | No text annotation Not in a motif group | ||
| IL_6XIR_189 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_6XIR_209 | 1/3/15:16, 1/3/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_6XIR_210 | 1/3/21:27, 1/3/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_6XIR_211 | 1/3/28:29, 1/3/49:52 | Minor groove platform Not in a motif group | homologous IL_5TBW_374 IL_63797.2 | |
| IL_6XIR_212 | 1/3/29:30, 1/3/47:49 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_6XIR_213 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_5TBW_376 IL_58103.6 | |
| IL_6XIR_214 | 1/3/72:80, 1/3/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_6XIR_215 | 1/3/84:87, 1/3/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_6XIR_216 | 1/4/43:64, 1/4/96:101 | No text annotation Not in a motif group | ||
| IL_6XIR_217 | 1/4/64:66, 1/4/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_145 IL_82068.2 | |
| IL_6XIR_218 | 1/4/68:69, 1/4/89:91 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6XIR_152 | No text annotation | ||
| IL_6XIR_158 | No text annotation | ||
| IL_6XIR_159 | No text annotation | ||
| IL_6XIR_163 | SSU/LSU pseudoknot | ||
| IL_6XIR_164 | Single bulged U | ||
| IL_6XIR_165 | No text annotation | ||
| IL_6XIR_169 | No text annotation | ||
| IL_6XIR_170 | No text annotation | ||
| IL_6XIR_171 | Single stack bend | ||
| IL_6XIR_172 | No text annotation | ||
| IL_6XIR_178 | No text annotation | ||
| IL_6XIR_179 | Other IL | ||
| IL_6XIR_180 | tSH-tHW-tHS | ||
| IL_6XIR_184 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6XIR_185 | Single bulged A | ||
| IL_6XIR_186 | Single bulged G | ||
| IL_6XIR_190 | No text annotation | ||
| IL_6XIR_191 | No text annotation | ||
| IL_6XIR_192 | Single bulged A | ||
| IL_6XIR_193 | No text annotation | ||
| IL_6XIR_194 | No text annotation | ||
| IL_6XIR_195 | No text annotation | ||
| IL_6XIR_196 | No text annotation | ||
| IL_6XIR_197 | No text annotation | ||
| IL_6XIR_198 | No text annotation | ||
| IL_6XIR_199 | No text annotation | ||
| IL_6XIR_200 | No text annotation | ||
| IL_6XIR_201 | No text annotation | ||
| IL_6XIR_202 | No text annotation | ||
| IL_6XIR_203 | No text annotation | ||
| IL_6XIR_204 | No text annotation | ||
| IL_6XIR_205 | Double sheared | ||
| IL_6XIR_206 | No text annotation | ||
| IL_6XIR_207 | Double sheared | ||
| IL_6XIR_208 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6XIR_001 | 1/1/113:116, 1/1/153:158, 1/1/263:267 | No text annotation Not in a motif group | ||
| J3_6XIR_002 | 1/1/369:376, 1/1/403:404, 1/4/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_6XIR_003 | 1/1/436:443, 1/1/492:495, 1/1/618:623 | No text annotation Not in a motif group | ||
| J3_6XIR_004 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_6XIR_005 | 1/1/814:820, 1/1/905:907, 1/1/923:926 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_6XIR_006 | 1/1/829:831, 1/1/863:867, 1/1/892:895 | No text annotation Not in a motif group | homologous J3_8C3A_004 NA | |
| J3_6XIR_007 | 1/1/986:987, 1/1/1062:1066, 1/1/1092:1098 | No text annotation Not in a motif group | homologous J3_5TBW_006 NA | |
| J3_6XIR_008 | 1/1/1479:1485, 1/1/1857:1859, 1/1/1871:1874 | No text annotation Not in a motif group | homologous J3_8C3A_006 NA | |
| J3_6XIR_009 | 1/1/1488:1491, 1/1/1837:1843, 1/1/1852:1854 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_6XIR_010 | 1/1/1526:1531, 1/1/1591:1595, 1/1/1612:1613 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_6XIR_011 | 1/1/1631:1632, 1/1/1641:1645, 1/1/1810:1811 | No text annotation Not in a motif group | ||
| J3_6XIR_012 | 1/1/2432:2435, 1/1/2512:2517, 1/1/2590:2597 | No text annotation Not in a motif group | homologous J3_8C3A_008 NA | |
| J3_6XIR_013 | 1/1/2529:2532, 1/1/2547:2564, 1/1/2577:2581 | No text annotation Not in a motif group | ||
| J3_6XIR_014 | 1/1/2664:2666, 1/1/2690:2692, 1/1/2701:2706 | No text annotation Not in a motif group | homologous J3_8C3A_010 NA | |
| J3_6XIR_015 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_6XIR_016 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_6XIR_017 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation Not in a motif group | ||
| J3_6XIR_018 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation Not in a motif group | ||
| J3_6XIR_019 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_6XIR_020 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_6XIR_021 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation Not in a motif group | ||
| J3_6XIR_022 | 1/2/1168:1172, 1/2/1467:1470, 1/2/1574:1577 | No text annotation Not in a motif group | ||
| J3_6XIR_027 | 1/2/1470:1474, 1/2/1533:1541, 1/2/1571:1574 | No text annotation Not in a motif group | ||
| J3_6XIR_028 | 1/3/9:14, 1/3/66:67, 1/3/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6XIR_023 | No text annotation | ||
| J3_6XIR_024 | No text annotation | ||
| J3_6XIR_025 | No text annotation | ||
| J3_6XIR_026 | No text annotation |
Coloring options: