4W2F Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4W2F_001 | 1/AA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_4W2F_004 | 1/AA/189C:189H | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_10278.1 | |
| HL_4W2F_005 | 1/AA/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_56691.2 | |
| HL_4W2F_006 | 1/AA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_4W2F_007 | 1/AA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_4W2F_008 | 1/AA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4W2F_010 | 1/AA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_4W2F_011 | 1/AA/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_4W2F_012 | 1/AA/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_4W2F_013 | 1/AA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_4W2F_014 | 1/AA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_4W2F_015 | 1/AA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_4W2F_016 | 1/AA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_4W2F_017 | 1/AA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_4W2F_018 | 1/AA/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_53837.1 | |
| HL_4W2F_019 | 1/AA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_4W2F_020 | 1/AA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_4W2F_021 | 1/AA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4W2F_022 | 1/AA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_4W2F_024 | 1/AA/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_4W2F_025 | 1/AA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4W2F_026 | 1/AA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_4W2F_027 | 1/AA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_4W2F_028 | 1/AA/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_4W2F_029 | 1/AA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_4W2F_030 | 1/AA/1356:1366 | No text annotation Not in a motif group | ||
| HL_4W2F_031 | 1/AA/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
| HL_4W2F_032 | 1/AA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4W2F_034 | 1/AW/30:40 | No text annotation Not in a motif group | homologous HL_1B23_002 NA | |
| HL_4W2F_035 | 1/AW/53:61 | No text annotation Not in a motif group | homologous HL_1B23_003 NA | |
| HL_4W2F_036 | 1/AX/13:22 | No text annotation Not in a motif group | homologous HL_6CFJ_106 HL_25462.2 | |
| HL_4W2F_037 | 1/AX/31:39 | No text annotation Not in a motif group | homologous HL_6CFJ_107 NA | |
| HL_4W2F_038 | 1/AX/53:61 | No text annotation Not in a motif group | homologous HL_5L4O_003 NA | |
| HL_4W2F_042 | 1/BA/58:67 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_4W2F_043 | 1/BA/86:94 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_4W2F_044 | 1/BA/121:126 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
| HL_4W2F_045 | 1/BA/136:141 | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_4W2F_046 | 1/BA/183:190 | No text annotation Not in a motif group | homologous HL_7RQB_006 HL_06192.2 | |
| HL_4W2F_047 | 1/BA/214:219 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_4W2F_048 | 1/BA/235:241 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_4W2F_049 | 1/BA/269:275 | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.2 | |
| HL_4W2F_050 | 1/BA/329:336 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_4W2F_051 | 1/BA/343:347 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_75407.1 | |
| HL_4W2F_052 | 1/BA/351:359 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
| HL_4W2F_053 | 1/BA/409:419 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_4W2F_054 | 1/BA/437:444 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_4W2F_055 | 1/BA/488:493 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_4W2F_056 | 1/BA/513:518 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_4W2F_058 | 1/BA/589:598 | No text annotation Not in a motif group | homologous HL_7RQB_018 HL_89380.2 | |
| HL_4W2F_059 | 1/BA/635:641 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
| HL_4W2F_060 | 1/BA/654:659 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_4W2F_061 | 1/BA/666:672 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.1 | |
| HL_4W2F_062 | 1/BA/759:766 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_4W2F_063 | 1/BA/791:800 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_4W2F_064 | 1/BA/826:832 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_74322.1 | |
| HL_4W2F_065 | 1/BA/873:878 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_4W2F_067 | 1/BA/1000:1007 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_4W2F_068 | 1/BA/1024:1031 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_4W2F_072 | 1/BA/1268:1273 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_4W2F_073 | 1/BA/1327:1335 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_4W2F_074 | 1/BA/1370:1376 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_4W2F_075 | 1/BA/1409:1414 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_4W2F_076 | 1/BA/1435:1444 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_4W2F_077 | 1/BA/1499:1506 | No text annotation Not in a motif group | homologous HL_7RQB_037 HL_32426.1 | |
| HL_4W2F_078 | 1/BA/1538:1544 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_4W2F_079 | 1/BA/1612:1615 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_4W2F_080 | 1/BA/1658:1665 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_4W2F_081 | 1/BA/1677:1682 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_4W2F_082 | 1/BA/1738:1743 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_03562.2 | |
| HL_4W2F_083 | 1/BA/1765:1771 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_4W2F_084 | 1/BA/1783:1787 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_4W2F_085 | 1/BA/1808:1818 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_4W2F_086 | 1/BA/1837:1842 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_4W2F_087 | 1/BA/1895:1900 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_4W2F_088 | 1/BA/1932:1942 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_4W2F_089 | 1/BA/1971:1979 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_4W2F_090 | 1/BA/2049:2058 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_4W2F_092 | 1/BA/2226:2231 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_98426.1 | |
| HL_4W2F_093 | 1/BA/2260:2268 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4W2F_094 | 1/BA/2276:2288 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_4W2F_095 | 1/BA/2315:2325 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_4W2F_096 | 1/BA/2336:2343 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_4W2F_097 | 1/BA/2367:2374 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_4W2F_098 | 1/BA/2386:2391 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
| HL_4W2F_099 | 1/BA/2416:2425 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_4W2F_100 | 1/BA/2483:2491 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_06192.2 | |
| HL_4W2F_101 | 1/BA/2540:2547 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_4W2F_102 | 1/BA/2563:2569 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_4W2F_103 | 1/BA/2606:2611 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_4W2F_104 | 1/BA/2670:2675 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_4W2F_105 | 1/BA/2713:2718 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_4W2F_106 | 1/BA/2758:2772 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_4W2F_108 | 1/BA/2829:2837 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_4W2F_109 | 1/BA/2866:2871 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_4W2F_110 | 1/BB/38:44 | No text annotation Not in a motif group | homologous HL_7RQB_070 HL_87939.1 | |
| HL_4W2F_111 | 1/BB/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_42097.1 | |
| HL_4W2F_112 | 1/CA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_4W2F_114 | 1/CA/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_4W2F_115 | 1/CA/189C:189H | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_4W2F_116 | 1/CA/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_56691.2 | |
| HL_4W2F_117 | 1/CA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_4W2F_118 | 1/CA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_4W2F_119 | 1/CA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4W2F_120 | 1/CA/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_4W2F_121 | 1/CA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_4W2F_122 | 1/CA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_4W2F_123 | 1/CA/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_4W2F_124 | 1/CA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_4W2F_125 | 1/CA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_4W2F_126 | 1/CA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_4W2F_127 | 1/CA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_4W2F_128 | 1/CA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_4W2F_129 | 1/CA/838:848 | No text annotation Not in a motif group | homologous HL_4LFB_018 HL_38927.2 | |
| HL_4W2F_130 | 1/CA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_4W2F_131 | 1/CA/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_42097.1 | |
| HL_4W2F_132 | 1/CA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4W2F_133 | 1/CA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_4W2F_134 | 1/CA/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_4W2F_135 | 1/CA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4W2F_136 | 1/CA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_4W2F_137 | 1/CA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_4W2F_138 | 1/CA/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_4W2F_139 | 1/CA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_4W2F_140 | 1/CA/1356:1366 | No text annotation Not in a motif group | ||
| HL_4W2F_141 | 1/CA/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
| HL_4W2F_142 | 1/CA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4W2F_144 | 1/CW/30:40 | No text annotation Not in a motif group | homologous HL_1B23_002 NA | |
| HL_4W2F_145 | 1/CW/53:61 | No text annotation Not in a motif group | homologous HL_1B23_003 NA | |
| HL_4W2F_146 | 1/CX/13:22 | No text annotation Not in a motif group | homologous HL_5E81_211 NA | |
| HL_4W2F_147 | 1/CX/31:39 | No text annotation Not in a motif group | homologous HL_6CFJ_107 NA | |
| HL_4W2F_148 | 1/CX/53:61 | No text annotation Not in a motif group | homologous HL_5L4O_003 NA | |
| HL_4W2F_152 | 1/DA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_4W2F_153 | 1/DA/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_4W2F_154 | 1/DA/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_4W2F_155 | 1/DA/139:142A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_4W2F_157 | 1/DA/194:201 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_06192.2 | |
| HL_4W2F_158 | 1/DA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_4W2F_159 | 1/DA/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_4W2F_160 | 1/DA/271I:271O | No text annotation Not in a motif group | ||
| HL_4W2F_161 | 1/DA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_4W2F_162 | 1/DA/319:323 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_75407.1 | |
| HL_4W2F_163 | 1/DA/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
| HL_4W2F_164 | 1/DA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_4W2F_165 | 1/DA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_4W2F_166 | 1/DA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_4W2F_167 | 1/DA/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_4W2F_169 | 1/DA/566:575 | No text annotation Not in a motif group | geometric HL_7RQB_018 HL_89380.2 | |
| HL_4W2F_170 | 1/DA/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
| HL_4W2F_171 | 1/DA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_4W2F_172 | 1/DA/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
| HL_4W2F_173 | 1/DA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_4W2F_174 | 1/DA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_4W2F_175 | 1/DA/779:785 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_74322.1 | |
| HL_4W2F_176 | 1/DA/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_4W2F_178 | 1/DA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_4W2F_179 | 1/DA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_4W2F_181 | 1/DA/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_4W2F_182 | 1/DA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_4W2F_183 | 1/DA/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_4W2F_184 | 1/DA/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_4W2F_185 | 1/DA/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_4W2F_186 | 1/DA/1451:1459 | No text annotation Not in a motif group | geometric HL_7RQB_037 HL_32426.1 | |
| HL_4W2F_187 | 1/DA/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_4W2F_189 | 1/DA/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_4W2F_190 | 1/DA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_4W2F_191 | 1/DA/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_4W2F_192 | 1/DA/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_03562.2 | |
| HL_4W2F_193 | 1/DA/1720:1742 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_4W2F_194 | 1/DA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_4W2F_195 | 1/DA/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_4W2F_196 | 1/DA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_4W2F_197 | 1/DA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_4W2F_198 | 1/DA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_4W2F_199 | 1/DA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_4W2F_200 | 1/DA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_4W2F_203 | 1/DA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4W2F_204 | 1/DA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_4W2F_205 | 1/DA/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_4W2F_206 | 1/DA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_4W2F_207 | 1/DA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_4W2F_208 | 1/DA/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
| HL_4W2F_209 | 1/DA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_4W2F_210 | 1/DA/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_06192.2 | |
| HL_4W2F_211 | 1/DA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_4W2F_212 | 1/DA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_4W2F_213 | 1/DA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_4W2F_214 | 1/DA/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_4W2F_215 | 1/DA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_4W2F_216 | 1/DA/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_4W2F_218 | 1/DA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_4W2F_219 | 1/DA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_4W2F_220 | 1/DB/38:44 | No text annotation Not in a motif group | geometric HL_5J7L_203 HL_87939.1 | |
| HL_4W2F_221 | 1/DB/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4W2F_002 | No text annotation | ||
| HL_4W2F_003 | GNRA | ||
| HL_4W2F_009 | No text annotation | ||
| HL_4W2F_023 | No text annotation | ||
| HL_4W2F_033 | No text annotation | ||
| HL_4W2F_039 | No text annotation | ||
| HL_4W2F_040 | No text annotation | ||
| HL_4W2F_041 | No text annotation | ||
| HL_4W2F_057 | No text annotation | ||
| HL_4W2F_066 | No text annotation | ||
| HL_4W2F_069 | No text annotation | ||
| HL_4W2F_070 | No text annotation | ||
| HL_4W2F_071 | No text annotation | ||
| HL_4W2F_091 | No text annotation | ||
| HL_4W2F_107 | No text annotation | ||
| HL_4W2F_113 | No text annotation | ||
| HL_4W2F_143 | No text annotation | ||
| HL_4W2F_149 | No text annotation | ||
| HL_4W2F_150 | No text annotation | ||
| HL_4W2F_151 | No text annotation | ||
| HL_4W2F_156 | No text annotation | ||
| HL_4W2F_168 | No text annotation | ||
| HL_4W2F_177 | No text annotation | ||
| HL_4W2F_180 | No text annotation | ||
| HL_4W2F_188 | No text annotation | ||
| HL_4W2F_201 | UNCG | ||
| HL_4W2F_202 | No text annotation | ||
| HL_4W2F_217 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4W2F_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_4W2F_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_4W2F_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_4W2F_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_4W2F_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_76389.1 | |
| IL_4W2F_006 | 1/AA/67:69, 1/AA/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_4W2F_007 | 1/AA/129:131, 1/AA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_4W2F_008 | 1/AA/132:136, 1/AA/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_4W2F_009 | 1/AA/148:153, 1/AA/168:174 | tWH-tWH-tHW-tHW Not in a motif group | geometric IL_4LFB_009 IL_39753.1 | |
| IL_4W2F_011 | 1/AA/186:188, 1/AA/189L:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_4W2F_012 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_4W2F_013 | 1/AA/249:252, 1/AA/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_4W2F_014 | 1/AA/292:293, 1/AA/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_4W2F_015 | 1/AA/367:369, 1/AA/392:393 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.13 | |
| IL_4W2F_016 | 1/AA/371:375, 1/AA/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_4W2F_017 | 1/AA/375:376, 1/AA/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.2 | |
| IL_4W2F_018 | 1/AA/409:416, 1/AA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_4W2F_019 | 1/AA/446:450, 1/AA/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4LFB_018 IL_88269.3 | |
| IL_4W2F_020 | 1/AA/450:455, 1/AA/476:483 | No text annotation Not in a motif group | homologous IL_4LFB_019 IL_11882.1 | |
| IL_4W2F_021 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_4W2F_022 | 1/AA/515:521, 1/AA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4W2F_023 | 1/AA/569:575, 1/AA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_4W2F_024 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_135 IL_17136.1 | |
| IL_4W2F_025 | 1/AA/594:596, 1/AA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_4W2F_026 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_4W2F_027 | 1/AA/605:612, 1/AA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_4W2F_028 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_4W2F_029 | 1/AA/657:658, 1/AA/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_4W2F_030 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_4W2F_031 | 1/AA/673:678, 1/AA/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_4W2F_032 | 1/AA/683:688, 1/AA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4W2F_033 | 1/AA/774:778, 1/AA/804:805 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
| IL_4W2F_034 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.1 | |
| IL_4W2F_035 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4W2F_036 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_4W2F_037 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_4W2F_038 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_4W2F_039 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_4W2F_040 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform Not in a motif group | geometric IL_6CZR_151 IL_47078.1 | |
| IL_4W2F_041 | 1/AA/1006:1010, 1/AA/1019:1023 | No text annotation Not in a motif group | ||
| IL_4W2F_042 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_4W2F_043 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_4W2F_044 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_4W2F_045 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.13 | |
| IL_4W2F_046 | 1/AA/1061:1063, 1/AA/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_4W2F_048 | 1/AA/1124:1127, 1/AA/1145:1149 | Minor groove platform Not in a motif group | geometric IL_6CZR_158 IL_58103.6 | |
| IL_4W2F_049 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_4W2F_050 | 1/AA/1158:1161, 1/AA/1175:1181 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
| IL_4W2F_051 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_4W2F_052 | 1/AA/1255:1258, 1/AA/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_4W2F_053 | 1/AA/1259:1260, 1/AA/1274:1276 | No text annotation Not in a motif group | ||
| IL_4W2F_054 | 1/AA/1260:1262, 1/AA/1273:1274 | No text annotation Not in a motif group | ||
| IL_4W2F_055 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_4W2F_056 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_4W2F_057 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4W2F_058 | 1/AA/1405:1407, 1/AA/1494:1496 | No text annotation Not in a motif group | geometric IL_5MWI_002 IL_95997.1 | |
| IL_4W2F_059 | 1/AA/1407:1409, 1/AA/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_4W2F_060 | 1/AA/1412:1414, 1/AA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_4W2F_061 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_4W2F_062 | 1/AA/1431:1435, 1/AA/1466:1469 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.1 | |
| IL_4W2F_063 | 1/AA/1435:1437, 1/AA/1464:1466 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_95997.1 | |
| IL_4W2F_064 | 1/AA/1440:1443, 1/AA/1459:1461 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.2 | |
| IL_4W2F_066 | 1/BA/24:30, 1/BA/535:541 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_4W2F_067 | 1/BA/36:37, 1/BA/468:470 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_4W2F_068 | 1/BA/42:43, 1/BA/461:463 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
| IL_4W2F_069 | 1/BA/80:84, 1/BA/96:103 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_4W2F_070 | 1/BA/172:173, 1/BA/201:203 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_4W2F_071 | 1/BA/177:183, 1/BA/190:197 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
| IL_4W2F_072 | 1/BA/228:234, 1/BA/242:247 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_4W2F_073 | 1/BA/291:292, 1/BA/392:394 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_27635.1 | |
| IL_4W2F_076 | 1/BA/304:308, 1/BA/381:384 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
| IL_4W2F_077 | 1/BA/312:314, 1/BA/374:377 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_4W2F_078 | 1/BA/317:319, 1/BA/367:371 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_4W2F_079 | 1/BA/507:510, 1/BA/521:534 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
| IL_4W2F_080 | 1/BA/587:589, 1/BA/598:600 | No text annotation Not in a motif group | geometric IL_7RQB_015 IL_95997.1 | |
| IL_4W2F_081 | 1/BA/629:633, 1/BA/643:647 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_4W2F_082 | 1/BA/719:721, 1/BA/853:855 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
| IL_4W2F_083 | 1/BA/721:725, 1/BA/846:853 | No text annotation Not in a motif group | geometric IL_7RQB_018 IL_17470.6 | |
| IL_4W2F_084 | 1/BA/744:745, 1/BA/810:812 | Single bulged A Not in a motif group | homologous IL_7RQB_019 IL_37497.2 | |
| IL_4W2F_085 | 1/BA/749:750, 1/BA/775:777 | Single bulged G Not in a motif group | homologous IL_7RQB_020 IL_00225.2 | |
| IL_4W2F_086 | 1/BA/750:754, 1/BA/771:775 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.8 | |
| IL_4W2F_087 | 1/BA/785:788, 1/BA/803:805 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_4W2F_088 | 1/BA/822:824, 1/BA/834:838 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 IL_90991.6 | |
| IL_4W2F_089 | 1/BA/884:885, 1/BA/985:987 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_4W2F_090 | 1/BA/891:893, 1/BA/976:979 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
| IL_4W2F_091 | 1/BA/893:897, 1/BA/973:976 | No text annotation Not in a motif group | homologous IL_7RQB_026 IL_94165.1 | |
| IL_4W2F_092 | 1/BA/904:909, 1/BA/961:966 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_4W2F_093 | 1/BA/909:910, 1/BA/959:961 | Minor groove platform Not in a motif group | homologous IL_7RQB_028 IL_42622.2 | |
| IL_4W2F_094 | 1/BA/911:915, 1/BA/955:958 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_4W2F_095 | 1/BA/917:919, 1/BA/951:953 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_034 IL_52767.2 | |
| IL_4W2F_096 | 1/BA/922:924, 1/BA/945:948 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
| IL_4W2F_098 | 1/BA/997:999, 1/BA/1008:1010 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_4W2F_099 | 1/BA/1040:1042, 1/BA/1205:1206 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_4W2F_100 | 1/BA/1044:1048, 1/BA/1199:1203 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_4W2F_101 | 1/BA/1050:1057, 1/BA/1196:1197 | SSU/LSU pseudoknot Not in a motif group | homologous IL_7RQB_037 IL_15861.7 | |
| IL_4W2F_102 | 1/BA/1057:1059, 1/BA/1195:1196 | Single bulged U Not in a motif group | geometric IL_7RQB_038 IL_83039.13 | |
| IL_4W2F_103 | 1/BA/1064:1070, 1/BA/1185:1190 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_4W2F_104 | 1/BA/1070:1076, 1/BA/1170:1185 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_4W2F_105 | 1/BA/1077:1080, 1/BA/1167:1169 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_4W2F_108 | 1/BA/1241:1243, 1/BA/1293:1296 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.2 | |
| IL_4W2F_109 | 1/BA/1247:1251, 1/BA/1286:1289 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_4W2F_110 | 1/BA/1253:1260, 1/BA/1280:1284 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_4W2F_111 | 1/BA/1264:1266, 1/BA/1275:1276 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_4W2F_112 | 1/BA/1308:1315, 1/BA/2033:2039 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_4W2F_113 | 1/BA/1356:1359, 1/BA/1649:1650 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_4W2F_114 | 1/BA/1365:1369, 1/BA/1377:1379 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_4W2F_115 | 1/BA/1397:1401, 1/BA/1422:1426 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_4W2F_116 | 1/BA/1403:1407, 1/BA/1416:1420 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_4W2F_117 | 1/BA/1461:1462, 1/BA/1629:1633 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_4W2F_118 | 1/BA/1463:1467, 1/BA/1624:1628 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
| IL_4W2F_119 | 1/BA/1479:1481, 1/BA/1604:1607 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_4W2F_120 | 1/BA/1483:1486, 1/BA/1598:1602 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_4W2F_121 | 1/BA/1495:1497, 1/BA/1509:1510 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
| IL_4W2F_122 | 1/BA/1498:1499, 1/BA/1506:1508 | Single bulged A Not in a motif group | geometric IL_7RQB_059 IL_37497.2 | |
| IL_4W2F_123 | 1/BA/1516:1520, 1/BA/1566:1569 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_4W2F_124 | 1/BA/1528:1529, 1/BA/1552:1558 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_4W2F_125 | 1/BA/1535:1537, 1/BA/1545:1546 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_4W2F_127 | 1/BA/1698:1703, 1/BA/2026:2028 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_4W2F_128 | 1/BA/1710:1712, 1/BA/2017:2019 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_4W2F_129 | 1/BA/1713:1716, 1/BA/2015:2016 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_4W2F_130 | 1/BA/1716:1721, 1/BA/2012:2015 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_82842.2 | |
| IL_4W2F_131 | 1/BA/1733:1738, 1/BA/1743:1749 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
| IL_4W2F_132 | 1/BA/1801:1802, 1/BA/2002:2004 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_4W2F_133 | 1/BA/1829:1835, 1/BA/1844:1852 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_4W2F_134 | 1/BA/1868:1871, 1/BA/1924:1925 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_4W2F_135 | 1/BA/1872:1873, 1/BA/1920:1923 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 IL_16396.2 | |
| IL_4W2F_136 | 1/BA/1877:1880, 1/BA/1915:1916 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_4W2F_137 | 1/BA/1882:1886, 1/BA/1909:1913 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_4W2F_138 | 1/BA/1887:1891, 1/BA/1904:1908 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_4W2F_139 | 1/BA/1955:1956, 1/BA/1986:1989 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
| IL_4W2F_140 | 1/BA/1956:1967, 1/BA/1983:1986 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_4W2F_141 | 1/BA/2072:2074, 1/BA/2629:2630 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_4W2F_142 | 1/BA/2076:2079, 1/BA/2623:2627 | No text annotation Not in a motif group | homologous IL_7RQB_079 IL_01206.1 | |
| IL_4W2F_143 | 1/BA/2089:2091, 1/BA/2454:2455 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_4W2F_144 | 1/BA/2092:2093, 1/BA/2450:2453 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_4W2F_145 | 1/BA/2103:2105, 1/BA/2248:2251 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_4W2F_146 | 1/BA/2107:2109, 1/BA/2244:2246 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_4W2F_151 | 1/BA/2309:2311, 1/BA/2329:2333 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 IL_38958.7 | |
| IL_4W2F_152 | 1/BA/2362:2365, 1/BA/2376:2379 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_4W2F_153 | 1/BA/2413:2415, 1/BA/2426:2427 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
| IL_4W2F_154 | 1/BA/2465:2466, 1/BA/2510:2512 | Single stack bend Not in a motif group | homologous IL_7RQB_091 IL_76488.2 | |
| IL_4W2F_155 | 1/BA/2466:2467, 1/BA/2508:2510 | Major groove platform Not in a motif group | geometric IL_7RQB_092 IL_27635.1 | |
| IL_4W2F_156 | 1/BA/2468:2471, 1/BA/2505:2507 | Major groove platform with extra pair Not in a motif group | homologous IL_7RQB_093 IL_63450.2 | |
| IL_4W2F_157 | 1/BA/2471:2473, 1/BA/2501:2505 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_92788.2 | |
| IL_4W2F_158 | 1/BA/2478:2482, 1/BA/2492:2496 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_4W2F_159 | 1/BA/2519:2520, 1/BA/2592:2594 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_4W2F_160 | 1/BA/2522:2524, 1/BA/2586:2590 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
| IL_4W2F_161 | 1/BA/2524:2525, 1/BA/2583:2586 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 IL_71530.2 | |
| IL_4W2F_162 | 1/BA/2534:2535, 1/BA/2552:2555 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
| IL_4W2F_164 | 1/BA/2603:2604, 1/BA/2613:2615 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_4W2F_165 | 1/BA/2648:2652, 1/BA/2787:2795 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_4W2F_166 | 1/BA/2664:2670, 1/BA/2675:2680 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 IL_16458.1 | |
| IL_4W2F_167 | 1/BA/2692:2696, 1/BA/2738:2740 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_4W2F_168 | 1/BA/2699:2703, 1/BA/2731:2735 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_4W2F_169 | 1/BA/2707:2708, 1/BA/2723:2727 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
| IL_4W2F_170 | 1/BA/2750:2755, 1/BA/2775:2780 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_4W2F_171 | 1/BA/2848:2849, 1/BA/2888:2890 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_4W2F_172 | 1/BA/2853:2856, 1/BA/2880:2884 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_4W2F_173 | 1/BA/2857:2862, 1/BA/2875:2879 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_4W2F_174 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_4W2F_175 | 1/BB/23:28, 1/BB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_4W2F_176 | 1/BB/30:31, 1/BB/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_4W2F_177 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_4W2F_178 | 1/BB/71:79, 1/BB/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_4W2F_179 | 1/CA/30:32, 1/CA/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_4W2F_180 | 1/CA/44:45, 1/CA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_4W2F_181 | 1/CA/47:52, 1/CA/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_4W2F_182 | 1/CA/54:56, 1/CA/356:357 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_93353.1 | |
| IL_4W2F_183 | 1/CA/63:66, 1/CA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_4W2F_184 | 1/CA/67:69, 1/CA/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_4W2F_185 | 1/CA/129:131, 1/CA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_4W2F_186 | 1/CA/132:136, 1/CA/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_4W2F_187 | 1/CA/148:153, 1/CA/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_4W2F_188 | 1/CA/186:188, 1/CA/189L:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_4W2F_189 | 1/CA/242:247, 1/CA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_4W2F_190 | 1/CA/249:252, 1/CA/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_4W2F_191 | 1/CA/292:293, 1/CA/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_4W2F_192 | 1/CA/367:369, 1/CA/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.13 | |
| IL_4W2F_193 | 1/CA/371:375, 1/CA/389:390 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_4W2F_194 | 1/CA/375:376, 1/CA/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_4W2F_195 | 1/CA/409:416, 1/CA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_4W2F_196 | 1/CA/446:450, 1/CA/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_4W2F_197 | 1/CA/450:455, 1/CA/476:483 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
| IL_4W2F_198 | 1/CA/504:511, 1/CA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_4W2F_199 | 1/CA/515:521, 1/CA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4W2F_200 | 1/CA/569:575, 1/CA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_4W2F_201 | 1/CA/580:584, 1/CA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_4W2F_202 | 1/CA/594:596, 1/CA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_4W2F_203 | 1/CA/597:598, 1/CA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_4W2F_204 | 1/CA/605:612, 1/CA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_4W2F_205 | 1/CA/654:655, 1/CA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_4W2F_206 | 1/CA/657:658, 1/CA/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_4W2F_207 | 1/CA/662:666, 1/CA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_4W2F_208 | 1/CA/673:678, 1/CA/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_4W2F_209 | 1/CA/683:688, 1/CA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4W2F_210 | 1/CA/774:778, 1/CA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_4W2F_211 | 1/CA/779:783, 1/CA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_4W2F_212 | 1/CA/887:894, 1/CA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4W2F_213 | 1/CA/922:923, 1/CA/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_4W2F_214 | 1/CA/925:927, 1/CA/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_4W2F_215 | 1/CA/933:935, 1/CA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_4W2F_216 | 1/CA/953:954, 1/CA/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_4W2F_217 | 1/CA/993:997, 1/CA/1044:1045 | Minor groove platform Not in a motif group | geometric IL_4LFB_039 IL_47078.1 | |
| IL_4W2F_218 | 1/CA/1002:1006, 1/CA/1023:1038 | No text annotation Not in a motif group | ||
| IL_4W2F_219 | 1/CA/1048:1050, 1/CA/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_4W2F_220 | 1/CA/1052:1056, 1/CA/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_4W2F_221 | 1/CA/1057:1058, 1/CA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_4W2F_222 | 1/CA/1060:1061, 1/CA/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.13 | |
| IL_4W2F_223 | 1/CA/1061:1063, 1/CA/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_4W2F_224 | 1/CA/1124:1127, 1/CA/1145:1149 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.6 | |
| IL_4W2F_225 | 1/CA/1129:1132, 1/CA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_4LFB_049 IL_15052.1 | |
| IL_4W2F_226 | 1/CA/1158:1161, 1/CA/1175:1181 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
| IL_4W2F_228 | 1/CA/1247:1253, 1/CA/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_4W2F_229 | 1/CA/1255:1258, 1/CA/1277:1282 | No text annotation Not in a motif group | ||
| IL_4W2F_230 | 1/CA/1259:1260, 1/CA/1274:1276 | Not an internal loop Not in a motif group | geometric IL_4LFB_053 IL_93353.1 | |
| IL_4W2F_231 | 1/CA/1260:1262, 1/CA/1273:1274 | Minor groove platform Not in a motif group | homologous IL_4LFB_054 IL_93353.1 | |
| IL_4W2F_232 | 1/CA/1303:1308, 1/CA/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_4W2F_233 | 1/CA/1399:1401, 1/CA/1501:1504 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
| IL_4W2F_234 | 1/CA/1401:1404, 1/CA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4W2F_235 | 1/CA/1405:1407, 1/CA/1494:1496 | No text annotation Not in a motif group | geometric IL_3GM7_005 IL_95997.1 | |
| IL_4W2F_236 | 1/CA/1407:1409, 1/CA/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_4W2F_237 | 1/CA/1412:1414, 1/CA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_4W2F_238 | 1/CA/1416:1419, 1/CA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_4W2F_239 | 1/CA/1431:1435, 1/CA/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.1 | |
| IL_4W2F_240 | 1/CA/1435:1437, 1/CA/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_4W2F_241 | 1/CA/1440:1443, 1/CA/1459:1461 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.2 | |
| IL_4W2F_244 | 1/DA/24:30, 1/DA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_4W2F_245 | 1/DA/36:37, 1/DA/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_4W2F_246 | 1/DA/42:44, 1/DA/433:436 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_18471.2 | |
| IL_4W2F_247 | 1/DA/81:85, 1/DA/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_4W2F_248 | 1/DA/183:184, 1/DA/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_4W2F_249 | 1/DA/188:194, 1/DA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_4W2F_250 | 1/DA/239:245, 1/DA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_4W2F_251 | 1/DA/272D:272F, 1/DA/363D:364 | Major groove platform with extra pair Not in a motif group | geometric IL_5FJC_003 IL_47263.2 | |
| IL_4W2F_253 | 1/DA/280:284, 1/DA/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
| IL_4W2F_254 | 1/DA/288:290, 1/DA/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_4W2F_255 | 1/DA/293:295, 1/DA/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_4W2F_256 | 1/DA/481:484, 1/DA/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
| IL_4W2F_257 | 1/DA/564:566, 1/DA/575:577 | No text annotation Not in a motif group | homologous IL_7RQB_015 IL_95997.1 | |
| IL_4W2F_258 | 1/DA/606:610, 1/DA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_4W2F_259 | 1/DA/672:674, 1/DA/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
| IL_4W2F_260 | 1/DA/674:678, 1/DA/799:806 | No text annotation Not in a motif group | geometric IL_7RQB_018 IL_17470.6 | |
| IL_4W2F_261 | 1/DA/697:698, 1/DA/763:765 | Single bulged A Not in a motif group | homologous IL_7RQB_019 IL_37497.2 | |
| IL_4W2F_262 | 1/DA/702:703, 1/DA/728:730 | Single bulged G Not in a motif group | homologous IL_7RQB_020 IL_00225.2 | |
| IL_4W2F_263 | 1/DA/703:707, 1/DA/724:728 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.8 | |
| IL_4W2F_264 | 1/DA/738:741, 1/DA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_4W2F_265 | 1/DA/775:777, 1/DA/787:791 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 IL_90991.6 | |
| IL_4W2F_266 | 1/DA/837:838, 1/DA/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_4W2F_267 | 1/DA/844:846, 1/DA/931:934 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 IL_52767.2 | |
| IL_4W2F_268 | 1/DA/846:850, 1/DA/927:931 | No text annotation Not in a motif group | geometric IL_7RQB_026 IL_94165.1 | |
| IL_4W2F_269 | 1/DA/857:862, 1/DA/915:920 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_4W2F_270 | 1/DA/862:863, 1/DA/913:915 | Minor groove platform Not in a motif group | homologous IL_7RQB_028 IL_42622.2 | |
| IL_4W2F_271 | 1/DA/864:868, 1/DA/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_4W2F_272 | 1/DA/870:872, 1/DA/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 IL_52767.2 | |
| IL_4W2F_275 | 1/DA/952:954, 1/DA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_4W2F_276 | 1/DA/994:996, 1/DA/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_4W2F_277 | 1/DA/998:1002, 1/DA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_4W2F_278 | 1/DA/1004:1011, 1/DA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.7 | |
| IL_4W2F_279 | 1/DA/1011:1013, 1/DA/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.13 | |
| IL_4W2F_280 | 1/DA/1018:1024, 1/DA/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_4W2F_281 | 1/DA/1024:1030, 1/DA/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_4W2F_282 | 1/DA/1031:1034, 1/DA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_4W2F_283 | 1/DA/1196:1198, 1/DA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.2 | |
| IL_4W2F_284 | 1/DA/1202:1206, 1/DA/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_4W2F_285 | 1/DA/1208:1215, 1/DA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_4W2F_286 | 1/DA/1219:1221, 1/DA/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_4W2F_287 | 1/DA/1262:1269, 1/DA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_4W2F_288 | 1/DA/1310:1313, 1/DA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_4W2F_289 | 1/DA/1319:1323, 1/DA/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_4W2F_290 | 1/DA/1351:1355, 1/DA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_4W2F_291 | 1/DA/1357:1361, 1/DA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_4W2F_292 | 1/DA/1415:1416, 1/DA/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_4W2F_293 | 1/DA/1417:1421, 1/DA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
| IL_4W2F_294 | 1/DA/1433:1435, 1/DA/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_4W2F_295 | 1/DA/1437:1440, 1/DA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_4W2F_296 | 1/DA/1448:1450, 1/DA/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
| IL_4W2F_297 | 1/DA/1450A:1451, 1/DA/1459:1461 | Single bulged A Not in a motif group | homologous IL_7RQB_059 IL_37497.2 | |
| IL_4W2F_298 | 1/DA/1469:1473, 1/DA/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_4W2F_299 | 1/DA/1481:1482, 1/DA/1506:1510 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_4W2F_300 | 1/DA/1489:1491, 1/DA/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_4W2F_302 | 1/DA/1651:1656, 1/DA/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_4W2F_303 | 1/DA/1663:1665, 1/DA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_4W2F_304 | 1/DA/1666:1669, 1/DA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_4W2F_305 | 1/DA/1669:1674, 1/DA/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_82842.2 | |
| IL_4W2F_306 | 1/DA/1686:1691, 1/DA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
| IL_4W2F_307 | 1/DA/1770:1771, 1/DA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_4W2F_308 | 1/DA/1798:1804, 1/DA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_4W2F_309 | 1/DA/1837:1840, 1/DA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_4W2F_310 | 1/DA/1841:1842, 1/DA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 IL_16396.2 | |
| IL_4W2F_311 | 1/DA/1846:1849, 1/DA/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_4W2F_312 | 1/DA/1851:1855, 1/DA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_4W2F_313 | 1/DA/1856:1860, 1/DA/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_4W2F_314 | 1/DA/1933:1934, 1/DA/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
| IL_4W2F_315 | 1/DA/1934:1945, 1/DA/1961:1964 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_4W2F_316 | 1/DA/2050:2052, 1/DA/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_4W2F_317 | 1/DA/2054:2057, 1/DA/2611:2615 | No text annotation Not in a motif group | homologous IL_7RQB_079 IL_01206.1 | |
| IL_4W2F_318 | 1/DA/2067:2069, 1/DA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_4W2F_319 | 1/DA/2070:2071, 1/DA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_4W2F_320 | 1/DA/2081:2083, 1/DA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_4W2F_321 | 1/DA/2085:2087, 1/DA/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_4W2F_327 | 1/DA/2350:2353, 1/DA/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_4W2F_328 | 1/DA/2401:2403, 1/DA/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
| IL_4W2F_329 | 1/DA/2453:2454, 1/DA/2498:2500 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.2 | |
| IL_4W2F_330 | 1/DA/2454:2455, 1/DA/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_4W2F_331 | 1/DA/2457:2459, 1/DA/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_4W2F_332 | 1/DA/2459:2461, 1/DA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_4W2F_333 | 1/DA/2466:2470, 1/DA/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_4W2F_334 | 1/DA/2507:2508, 1/DA/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_4W2F_335 | 1/DA/2510:2512, 1/DA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
| IL_4W2F_336 | 1/DA/2512:2513, 1/DA/2571:2574 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 IL_71530.2 | |
| IL_4W2F_337 | 1/DA/2522:2523, 1/DA/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
| IL_4W2F_339 | 1/DA/2591:2592, 1/DA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_4W2F_340 | 1/DA/2636:2640, 1/DA/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_4W2F_341 | 1/DA/2652:2658, 1/DA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 IL_16458.1 | |
| IL_4W2F_342 | 1/DA/2680:2684, 1/DA/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_4W2F_343 | 1/DA/2687:2691, 1/DA/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_4W2F_344 | 1/DA/2695:2696, 1/DA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
| IL_4W2F_345 | 1/DA/2737:2742, 1/DA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_4W2F_346 | 1/DA/2838:2839, 1/DA/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_4W2F_347 | 1/DA/2843:2846, 1/DA/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_4W2F_348 | 1/DA/2847:2852, 1/DA/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_4W2F_349 | 1/DB/17:18, 1/DB/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_4W2F_350 | 1/DB/23:28, 1/DB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_4W2F_351 | 1/DB/30:32, 1/DB/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_4W2F_352 | 1/DB/34:38, 1/DB/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
| IL_4W2F_353 | 1/DB/71:79, 1/DB/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4W2F_010 | No text annotation | ||
| IL_4W2F_047 | No text annotation | ||
| IL_4W2F_065 | No text annotation | ||
| IL_4W2F_074 | No text annotation | ||
| IL_4W2F_075 | No text annotation | ||
| IL_4W2F_097 | No text annotation | ||
| IL_4W2F_106 | Kink-turn | ||
| IL_4W2F_107 | Major groove platform with extra cWW | ||
| IL_4W2F_126 | No text annotation | ||
| IL_4W2F_147 | UU cWW | ||
| IL_4W2F_148 | No text annotation | ||
| IL_4W2F_149 | No text annotation | ||
| IL_4W2F_150 | No text annotation | ||
| IL_4W2F_163 | No text annotation | ||
| IL_4W2F_227 | No text annotation | ||
| IL_4W2F_242 | No text annotation | ||
| IL_4W2F_243 | No text annotation | ||
| IL_4W2F_252 | No text annotation | ||
| IL_4W2F_273 | No text annotation | ||
| IL_4W2F_274 | No text annotation | ||
| IL_4W2F_301 | No text annotation | ||
| IL_4W2F_322 | No text annotation | ||
| IL_4W2F_323 | No text annotation | ||
| IL_4W2F_324 | No text annotation | ||
| IL_4W2F_325 | No text annotation | ||
| IL_4W2F_326 | No text annotation | ||
| IL_4W2F_338 | No text annotation | ||
| IL_4W2F_354 | Not an internal loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4W2F_001 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_4W2F_002 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_4W2F_003 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation Not in a motif group | ||
| J3_4W2F_004 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation Not in a motif group | ||
| J3_4W2F_005 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_4W2F_006 | 1/AA/1002:1006, 1/AA/1023:1028, 1/AA/1033:1038 | No text annotation Not in a motif group | homologous J3_6CZR_022 NA | |
| J3_4W2F_007 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation Not in a motif group | ||
| J3_4W2F_008 | 1/AA/1116:1118, 1/AA/1155:1158, 1/AA/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_4W2F_009 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA | |
| J3_4W2F_010 | 1/BA/730:736, 1/BA/820:822, 1/BA/838:841 | No text annotation Not in a motif group | ||
| J3_4W2F_011 | 1/BA/745:747, 1/BA/779:783, 1/BA/807:810 | No text annotation Not in a motif group | ||
| J3_4W2F_013 | 1/BA/1344:1349, 1/BA/1671:1673, 1/BA/1686:1689 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_4W2F_014 | 1/BA/1352:1355, 1/BA/1651:1657, 1/BA/1666:1668 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_4W2F_015 | 1/BA/2113:2115, 1/BA/2218:2222, 1/BA/2235:2240 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_4W2F_016 | 1/BA/2307:2309, 1/BA/2333:2335, 1/BA/2344:2349 | No text annotation Not in a motif group | ||
| J3_4W2F_017 | 1/BA/2529:2532, 1/BA/2557:2559, 1/BA/2573:2579 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_4W2F_018 | 1/BA/2802:2804, 1/BA/2816:2821, 1/BA/2899:2903 | No text annotation Not in a motif group | homologous J3_7RQB_013 NA | |
| J3_4W2F_019 | 1/BB/11:16, 1/BB/68:70, 1/BB/107:110 | No text annotation Not in a motif group | ||
| J3_4W2F_020 | 1/CA/826:829, 1/CA/857:861, 1/CA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_4W2F_021 | 1/CA/936:939, 1/CA/1344:1350, 1/CA/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_4W2F_022 | 1/CA/943:946, 1/CA/1235:1237, 1/CA/1337:1340 | No text annotation Not in a motif group | ||
| J3_4W2F_023 | 1/CA/955:962, 1/CA/973:984, 1/CA/1221:1225 | No text annotation Not in a motif group | ||
| J3_4W2F_024 | 1/CA/990:993, 1/CA/1045:1047, 1/CA/1210:1215 | No text annotation Not in a motif group | homologous J3_5J7L_007 NA | |
| J3_4W2F_025 | 1/CA/1063:1068, 1/CA/1107:1113, 1/CA/1187:1193 | No text annotation Not in a motif group | ||
| J3_4W2F_026 | 1/CA/1116:1118, 1/CA/1155:1158, 1/CA/1181:1184 | No text annotation Not in a motif group | homologous J3_4LFB_008 NA | |
| J3_4W2F_027 | 1/CA/1237:1241, 1/CA/1296:1303, 1/CA/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA | |
| J3_4W2F_028 | 1/DA/683:689, 1/DA/773:775, 1/DA/791:794 | No text annotation Not in a motif group | ||
| J3_4W2F_029 | 1/DA/698:700, 1/DA/732:736, 1/DA/760:763 | No text annotation Not in a motif group | ||
| J3_4W2F_030 | 1/DA/1298:1303, 1/DA/1625:1627, 1/DA/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_4W2F_031 | 1/DA/1306:1309, 1/DA/1605:1611, 1/DA/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_4W2F_032 | 1/DA/2091:2093, 1/DA/2196:2200, 1/DA/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_4W2F_033 | 1/DA/2295:2299, 1/DA/2317:2323, 1/DA/2332:2337 | No text annotation Not in a motif group | ||
| J3_4W2F_034 | 1/DA/2517:2520, 1/DA/2545:2547, 1/DA/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4W2F_012 | No text annotation |
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